BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11160
(598 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EDF|A Chain A, Dimeric Hugdh, K94e
pdb|4EDF|B Chain B, Dimeric Hugdh, K94e
pdb|4EDF|C Chain C, Dimeric Hugdh, K94e
pdb|4EDF|D Chain D, Dimeric Hugdh, K94e
Length = 494
Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust.
Identities = 293/541 (54%), Positives = 350/541 (64%), Gaps = 103/541 (19%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP I+VTVVD +
Sbjct: 4 IKKICCIGAGYVGG-------------------------PTCSVIAHMCPEIRVTVVDVN 38
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++A L+FISVN T T
Sbjct: 39 ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVN--TPTETY 96
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
G G +GRA
Sbjct: 97 GMG-----------------------------------------------------KGRA 103
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 104 ADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 163
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNTWSSELSKLAA
Sbjct: 164 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAA 223
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 224 NAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLN 283
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 284 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 343
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVS----ILDDP 465
DTRES +I++ + L+ EGA L IYDPKV QI+ DL P + + + VS I DP
Sbjct: 344 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSH--PGVSEDDQVSRLVTISKDP 401
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHT 523
Y+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T
Sbjct: 402 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIET 461
Query: 524 V 524
+
Sbjct: 462 I 462
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 59/71 (83%)
Query: 522 HTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581
VID+N+YQ+ RF+ +II SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ E
Sbjct: 301 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE 360
Query: 582 GAKLKIYDPKL 592
GA L IYDPK+
Sbjct: 361 GAHLHIYDPKV 371
>pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|L Chain L, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|K Chain K, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|J Chain J, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|I Chain I, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Length = 487
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 287/541 (53%), Positives = 346/541 (63%), Gaps = 103/541 (19%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP I+VTVVD +
Sbjct: 4 IKKICCIGAGYVGG-------------------------PTCSVIAHMCPEIRVTVVDVN 38
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++
Sbjct: 39 ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE----------------- 81
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
ADL ++ + KT +GRA
Sbjct: 82 -----ADLVFIS---------------------------------VNTPTKTYGMGKGRA 103
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 104 ADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 163
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNTWSSELSKLAA
Sbjct: 164 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAA 223
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 224 NAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLN 283
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 284 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 343
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVS----ILDDP 465
DTRES +I++ + L+ EGA L IYDPKV QI+ DL P + + + VS I DP
Sbjct: 344 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSH--PGVSEDDQVSRLVTISKDP 401
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHT 523
Y+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T
Sbjct: 402 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIET 461
Query: 524 V 524
+
Sbjct: 462 I 462
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 59/71 (83%)
Query: 522 HTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581
VID+N+YQ+ RF+ +II SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ E
Sbjct: 301 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE 360
Query: 582 GAKLKIYDPKL 592
GA L IYDPK+
Sbjct: 361 GAHLHIYDPKV 371
>pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase
Length = 494
Score = 535 bits (1379), Expect = e-152, Method: Compositional matrix adjust.
Identities = 287/541 (53%), Positives = 346/541 (63%), Gaps = 103/541 (19%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP I+VTVVD +
Sbjct: 4 IKKICCIGAGYVGG-------------------------PTCSVIAHMCPEIRVTVVDVN 38
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++
Sbjct: 39 ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE----------------- 81
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
ADL ++ + KT +GRA
Sbjct: 82 -----ADLVFIS---------------------------------VNTPTKTYGMGKGRA 103
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 104 ADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 163
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNTWSSELSKLAA
Sbjct: 164 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAA 223
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 224 NAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLN 283
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 284 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 343
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVS----ILDDP 465
DTRES +I++ + L+ EGA L IYDPKV QI+ DL P + + + VS I DP
Sbjct: 344 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSH--PGVSEDDQVSRLVTISKDP 401
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHT 523
Y+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T
Sbjct: 402 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIET 461
Query: 524 V 524
+
Sbjct: 462 I 462
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 59/71 (83%)
Query: 522 HTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581
VID+N+YQ+ RF+ +II SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ E
Sbjct: 301 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE 360
Query: 582 GAKLKIYDPKL 592
GA L IYDPK+
Sbjct: 361 GAHLHIYDPKV 371
>pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|B Chain B, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|C Chain C, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|D Chain D, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|E Chain E, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|F Chain F, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|G Chain G, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|H Chain H, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|I Chain I, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|J Chain J, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|K Chain K, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|L Chain L, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2QG4|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
Length = 467
Score = 535 bits (1378), Expect = e-152, Method: Compositional matrix adjust.
Identities = 287/541 (53%), Positives = 346/541 (63%), Gaps = 103/541 (19%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP I+VTVVD +
Sbjct: 5 IKKICCIGAGYVGG-------------------------PTCSVIAHMCPEIRVTVVDVN 39
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++
Sbjct: 40 ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE----------------- 82
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
ADL ++ + KT +GRA
Sbjct: 83 -----ADLVFIS---------------------------------VNTPTKTYGMGKGRA 104
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 105 ADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 164
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNTWSSELSKLAA
Sbjct: 165 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAA 224
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 225 NAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLN 284
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 285 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 344
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVS----ILDDP 465
DTRES +I++ + L+ EGA L IYDPKV QI+ DL P + + + VS I DP
Sbjct: 345 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSH--PGVSEDDQVSRLVTISKDP 402
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHT 523
Y+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T
Sbjct: 403 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIET 462
Query: 524 V 524
+
Sbjct: 463 I 463
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 59/71 (83%)
Query: 522 HTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581
VID+N+YQ+ RF+ +II SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ E
Sbjct: 302 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE 361
Query: 582 GAKLKIYDPKL 592
GA L IYDPK+
Sbjct: 362 GAHLHIYDPKV 372
>pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
Length = 467
Score = 534 bits (1376), Expect = e-152, Method: Compositional matrix adjust.
Identities = 286/541 (52%), Positives = 346/541 (63%), Gaps = 103/541 (19%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP I+VTVVD +
Sbjct: 5 IKKICCIGAGYVGG-------------------------PTCSVIAHMCPEIRVTVVDVN 39
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++
Sbjct: 40 ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE----------------- 82
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
ADL ++ + KT +GRA
Sbjct: 83 -----ADLVFIS---------------------------------VNTPTKTYGMGKGRA 104
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q+LSNP+FL
Sbjct: 105 ADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPQFL 164
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNTWSSELSKLAA
Sbjct: 165 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAA 224
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 225 NAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLN 284
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 285 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 344
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVS----ILDDP 465
DTRES +I++ + L+ EGA L IYDPKV QI+ DL P + + + VS I DP
Sbjct: 345 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSH--PGVSEDDQVSRLVTISKDP 402
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHT 523
Y+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T
Sbjct: 403 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIET 462
Query: 524 V 524
+
Sbjct: 463 I 463
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 59/71 (83%)
Query: 522 HTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581
VID+N+YQ+ RF+ +II SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ E
Sbjct: 302 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE 361
Query: 582 GAKLKIYDPKL 592
GA L IYDPK+
Sbjct: 362 GAHLHIYDPKV 372
>pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form
Length = 467
Score = 533 bits (1374), Expect = e-152, Method: Compositional matrix adjust.
Identities = 286/541 (52%), Positives = 345/541 (63%), Gaps = 103/541 (19%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP I+VTVVD +
Sbjct: 5 IKKICCIGAGYVGG-------------------------PTCSVIAHMCPEIRVTVVDVN 39
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++
Sbjct: 40 ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE----------------- 82
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
ADL ++ + KT +GRA
Sbjct: 83 -----ADLVFIS---------------------------------VNTPTKTYGMGKGRA 104
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKS VPVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 105 ADLKYIEACARRIVQNSNGYKIVTEKSAVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 164
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNTWSSELSKLAA
Sbjct: 165 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAA 224
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 225 NAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLN 284
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 285 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 344
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVS----ILDDP 465
DTRES +I++ + L+ EGA L IYDPKV QI+ DL P + + + VS I DP
Sbjct: 345 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSH--PGVSEDDQVSRLVTISKDP 402
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHT 523
Y+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T
Sbjct: 403 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIET 462
Query: 524 V 524
+
Sbjct: 463 I 463
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 59/71 (83%)
Query: 522 HTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581
VID+N+YQ+ RF+ +II SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ E
Sbjct: 302 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE 361
Query: 582 GAKLKIYDPKL 592
GA L IYDPK+
Sbjct: 362 GAHLHIYDPKV 372
>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
Length = 493
Score = 529 bits (1363), Expect = e-150, Method: Compositional matrix adjust.
Identities = 286/541 (52%), Positives = 345/541 (63%), Gaps = 104/541 (19%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I ICCIGAGYVGG PTCSVIA CP I+VTVVD +
Sbjct: 4 IKKICCIGAGYVGG-------------------------PTCSVIAHMCPEIRVTVVDVN 38
Query: 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++
Sbjct: 39 ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE----------------- 81
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
ADL ++ + KT +GRA
Sbjct: 82 -----ADLVFIS---------------------------------VNTPTKTYGMGKGRA 103
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
ADLKY+EA AR I + + KIV EKST PVRAAESI + AN K N+ Q+LSNPEFL
Sbjct: 104 ADLKYIEACARRIVQNSNGYKIVTEKST-PVRAAESIRRIFDANTKPNLNLQVLSNPEFL 162
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNTWSSELSKLAA
Sbjct: 163 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAA 222
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
NAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFGGSCFQKD+LN
Sbjct: 223 NAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLN 282
Query: 365 LVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFKKNTG 409
LVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAILGFAFKK+TG
Sbjct: 283 LVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTG 342
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVS----ILDDP 465
DTRES +I++ + L+ EGA L IYDPKV QI+ DL P + + + VS I DP
Sbjct: 343 DTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSH--PGVSEDDQVSRLVTISKDP 400
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALLDIGFNVHT 523
Y+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L IGF + T
Sbjct: 401 YEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIET 460
Query: 524 V 524
+
Sbjct: 461 I 461
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 59/71 (83%)
Query: 522 HTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581
VID+N+YQ+ RF+ +II SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+ E
Sbjct: 300 QQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDE 359
Query: 582 GAKLKIYDPKL 592
GA L IYDPK+
Sbjct: 360 GAHLHIYDPKV 370
>pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|B Chain B, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|C Chain C, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
Length = 481
Score = 516 bits (1328), Expect = e-146, Method: Compositional matrix adjust.
Identities = 269/508 (52%), Positives = 335/508 (65%), Gaps = 68/508 (13%)
Query: 32 QVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTR 91
+V V YVGGPTC++IA KCP+I VTVVD + +I +WNS+KLPIYEPGLDE+V R
Sbjct: 11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAAR 70
Query: 92 DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKI 151
NLFFS+DI AI +A LIFISVNTPTK +G GKG A DLKYVE+ +R IA+ A KI
Sbjct: 71 GRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKI 130
Query: 152 VVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKS 211
VVEKSTVPV+AAESI +L+ K N +LK+ ++ ++ + + E +
Sbjct: 131 VVEKSTVPVKAAESIGCILREAQKNN-------ENLKF---------QVLSNPEFLAEGT 174
Query: 212 TVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYA 271
+ + L+NP DR+LIGGE +PEG
Sbjct: 175 AM----------------------KDLANP---------------DRVLIGGESSPEGLQ 197
Query: 272 AIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSE 331
A+ L +YE+W+PR I+TTNTWSSELSKL ANAFLAQRISSINS+SAVCEATGA++SE
Sbjct: 198 AVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEATGAEISE 257
Query: 332 VAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQ--------- 382
VA AVG D+RIG+KFLQASVGFGGSCFQKD+L+LVY+CE LNLP+VA YWQ
Sbjct: 258 VAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQ 317
Query: 383 ------QLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPK 436
++ LFNTV+DK IAI GFAFKKNTGDTRES AIHV + L+ E AKL +YDPK
Sbjct: 318 RRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPK 377
Query: 437 VEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGM 496
V+ SQ++ DL + +++ DPY + HAIVV TEWDEFV L+Y +I+ M
Sbjct: 378 VQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDM 437
Query: 497 MKPAYIFDGRKILNHDALLDIGFNVHTV 524
PA IFDGR IL+ AL +IGF +
Sbjct: 438 QHPAAIFDGRLILDQKALREIGFRTFAI 465
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 58/69 (84%)
Query: 524 VIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGA 583
VI++N +Q+ RF++KII+ LFNTV+DK IAI GFAFKKNTGDTRES AIHV + L+ E A
Sbjct: 310 VININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHA 369
Query: 584 KLKIYDPKL 592
KL +YDPK+
Sbjct: 370 KLSVYDPKV 378
>pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|B Chain B, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|C Chain C, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|D Chain D, Bcec And The Final Step Of Ugds Reaction
Length = 478
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 161/514 (31%), Positives = 246/514 (47%), Gaps = 83/514 (16%)
Query: 30 NIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKK 89
++ +T++ YVG T + +A ++ VD++ +I N+ +PI+EPGL EV+ +
Sbjct: 8 SMNLTIIGSGYVGLVTGACLADIGHDVFCLDVDQA--KIDILNNGGVPIHEPGLKEVIAR 65
Query: 90 TRDVN-LFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATD 148
R L FSTDI++A+ + FI+V TP G+ ADL+YV AAAR I T
Sbjct: 66 NRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGS-----ADLQYVLAAARNIGRYMTG 120
Query: 149 NKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVV 208
K++V+KSTVPV AE + RAA
Sbjct: 121 FKVIVDKSTVPVGTAERV----------------RAA----------------------- 141
Query: 209 EKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPE 268
AE + A + F ++SNPEFL EG A+ D DRI+IG ++
Sbjct: 142 --------VAEEL-----AKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVIGCDDDVP 188
Query: 269 GYAAIESLSWVYEHWIPRKH--ILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATG 326
G A E + +Y + R H L + S+E +K AANA LA RIS +N L+ + + G
Sbjct: 189 GERARELMKKLYAPF-NRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLADRFG 247
Query: 327 ADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDI-------------LNLVYICECLN 373
AD+ V + +G D RIG FL A G+GGSCF KD+ L ++ +N
Sbjct: 248 ADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVN 307
Query: 374 LPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIY 433
+ ++ ++ + AI G AFK NT D RE+P+ + LL GA++ Y
Sbjct: 308 ATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAY 367
Query: 434 DP--KVEPSQIIQ-DLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYK 490
DP + E ++I DL + P L+ +S +DD ++ A+V+ TEW F + D+
Sbjct: 368 DPVAQEEARRVIALDLAD-HPSWLER--LSFVDDEAQAARDADALVIVTEWKIFKSPDFV 424
Query: 491 RIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTV 524
+ + K IFDGR + + + + G H +
Sbjct: 425 ALGR-LWKTPVIFDGRNLYEPETMSEQGIEYHPI 457
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ V +N QK ++KI++ ++ + AI G AFK NT D RE+P+ + LL
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLS 359
Query: 581 EGAKLKIYDP 590
GA++ YDP
Sbjct: 360 RGARIAAYDP 369
>pdb|2Y0C|A Chain A, Bcec Mutation Y10s
pdb|2Y0C|B Chain B, Bcec Mutation Y10s
pdb|2Y0C|C Chain C, Bcec Mutation Y10s
pdb|2Y0C|D Chain D, Bcec Mutation Y10s
Length = 478
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 155/486 (31%), Positives = 231/486 (47%), Gaps = 81/486 (16%)
Query: 58 VTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVN-LFFSTDIKSAIQKAQLIFISVN 116
V +D + +I N+ +PI+EPGL EV+ + R L FSTDI++A+ + FI+V
Sbjct: 34 VFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQFIAVG 93
Query: 117 TPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKT 176
TP G+ ADL+YV AAAR I T K++V+KSTVPV AE +
Sbjct: 94 TPPDEDGS-----ADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERV---------- 138
Query: 177 NVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQ 236
RAA AE + A + F
Sbjct: 139 ------RAA-------------------------------VAEEL-----AKRGGDQMFS 156
Query: 237 ILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH--ILTTNT 294
++SNPEFL EG A+ D DRI+IG ++ G A E + +Y + R H L +
Sbjct: 157 VVSNPEFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPF-NRNHERTLYMDV 215
Query: 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFG 354
S+E +K AANA LA RIS +N L+ + + GAD+ V + +G D RIG FL A G+G
Sbjct: 216 RSAEFTKYAANAMLATRISFMNELANLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYG 275
Query: 355 GSCFQKDI-------------LNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILG 401
GSCF KD+ L ++ +N + ++ ++ + AI G
Sbjct: 276 GSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWG 335
Query: 402 FAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDP--KVEPSQIIQ-DLKELDPELLDHNA 458
AFK NT D RE+P+ + LL GA++ YDP + E ++I DL + P L+
Sbjct: 336 LAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLAD-HPSWLER-- 392
Query: 459 VSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIG 518
+S +DD ++ A+V+ TEW F + D+ + + K IFDGR + + + + G
Sbjct: 393 LSFVDDEAQAARDADALVIVTEWKIFKSPDFVALGR-LWKTPVIFDGRNLYEPETMSEQG 451
Query: 519 FNVHTV 524
H +
Sbjct: 452 IEYHPI 457
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ V +N QK ++KI++ ++ + AI G AFK NT D RE+P+ + LL
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLS 359
Query: 581 EGAKLKIYDP 590
GA++ YDP
Sbjct: 360 RGARIAAYDP 369
>pdb|2Y0D|A Chain A, Bcec Mutation Y10k
pdb|2Y0D|B Chain B, Bcec Mutation Y10k
pdb|2Y0D|C Chain C, Bcec Mutation Y10k
pdb|2Y0D|D Chain D, Bcec Mutation Y10k
Length = 478
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 155/486 (31%), Positives = 231/486 (47%), Gaps = 81/486 (16%)
Query: 58 VTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVN-LFFSTDIKSAIQKAQLIFISVN 116
V +D + +I N+ +PI+EPGL EV+ + R L FSTDI++A+ + FI+V
Sbjct: 34 VFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQFIAVG 93
Query: 117 TPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKT 176
TP G+ ADL+YV AAAR I T K++V+KSTVPV AE +
Sbjct: 94 TPPDEDGS-----ADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERV---------- 138
Query: 177 NVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQ 236
RAA AE + A + F
Sbjct: 139 ------RAA-------------------------------VAEEL-----AKRGGDQMFS 156
Query: 237 ILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH--ILTTNT 294
++SNPEFL EG A+ D DRI+IG ++ G A E + +Y + R H L +
Sbjct: 157 VVSNPEFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPF-NRNHERTLYMDV 215
Query: 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFG 354
S+E +K AANA LA RIS +N L+ + + GAD+ V + +G D RIG FL A G+G
Sbjct: 216 RSAEFTKYAANAMLATRISFMNELANLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYG 275
Query: 355 GSCFQKDI-------------LNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILG 401
GSCF KD+ L ++ +N + ++ ++ + AI G
Sbjct: 276 GSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWG 335
Query: 402 FAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDP--KVEPSQIIQ-DLKELDPELLDHNA 458
AFK NT D RE+P+ + LL GA++ YDP + E ++I DL + P L+
Sbjct: 336 LAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLAD-HPSWLER-- 392
Query: 459 VSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIG 518
+S +DD ++ A+V+ TEW F + D+ + + K IFDGR + + + + G
Sbjct: 393 LSFVDDEAQAARDADALVIVTEWKIFKSPDFVALGR-LWKTPVIFDGRNLYEPETMSEQG 451
Query: 519 FNVHTV 524
H +
Sbjct: 452 IEYHPI 457
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ V +N QK ++KI++ ++ + AI G AFK NT D RE+P+ + LL
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLS 359
Query: 581 EGAKLKIYDP 590
GA++ YDP
Sbjct: 360 RGARIAAYDP 369
>pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
pdb|4A7P|B Chain B, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
Length = 446
Score = 198 bits (504), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 147/461 (31%), Positives = 211/461 (45%), Gaps = 89/461 (19%)
Query: 57 QVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116
+V VDK +I + N PIYEPGLD +V S ++ +L F +
Sbjct: 33 EVVCVDKDARKIELLHQNVXPIYEPGLDALVA--------------SNVKAGRLSFTT-- 76
Query: 117 TPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKT 176
DL AE D V P R + H
Sbjct: 77 --------------DL----------AEGVKDADAVFIAVGTPSRRGD--------GH-- 102
Query: 177 NVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQ 236
ADL YV AAAR IAE T ++V KSTVPV + + ++ A N +
Sbjct: 103 --------ADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERII-AEVAPNSGAK 153
Query: 237 ILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH--ILTTNT 294
++SNPEFL EG A+ D DR+++G E+ A + +Y + +L T
Sbjct: 154 VVSNPEFLREGAAIEDFKRPDRVVVGTEDE----FARQVXREIYRPLSLNQSAPVLFTGR 209
Query: 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFG 354
+SEL K AANAFLA +I+ IN ++ +CE GADV EV++ +G D+RIG KFL A G+G
Sbjct: 210 RTSELIKYAANAFLAVKITFINEIADLCEQVGADVQEVSRGIGXDNRIGGKFLHAGPGYG 269
Query: 355 GSCFQKDILNL----------VYICEC---LNLPEVASYWQQLYESLFNTVSDKHIAILG 401
GSCF KD L L + I E +N + +++ ++ V K + ILG
Sbjct: 270 GSCFPKDTLALXKTAADNETPLRIVEATVQVNDARKRAXGRKVIKAXGGDVRGKTVGILG 329
Query: 402 FAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSI 461
FK NT D R++P++ + L GA +K YDP + +++ L D V
Sbjct: 330 LTFKPNTDDXRDAPSLSIIAALQDAGATVKAYDP--------EGVEQASKXLTD---VEF 378
Query: 462 LDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYI 502
+++PY A+V+ TEWD F LD RI + P +
Sbjct: 379 VENPYAAADGADALVIVTEWDAFRALDLTRIKNSLKSPVLV 419
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
V + +N+ +K K+I + V K + ILG FK NT D R++P++ + L
Sbjct: 294 VEATVQVNDARKRAXGRKVIKAXGGDVRGKTVGILGLTFKPNTDDXRDAPSLSIIAALQD 353
Query: 581 EGAKLKIYDPK 591
GA +K YDP+
Sbjct: 354 AGATVKAYDPE 364
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 165/324 (50%), Gaps = 35/324 (10%)
Query: 184 AADLKYVEAAARMIAE-IATDNK--IVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240
+ADL+YVEAAAR + I + +VV KSTVP E ++ A V+F + SN
Sbjct: 114 SADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASN 173
Query: 241 PEFLSEGTAMTDLFNADRILIG-GEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSEL 299
PEFL EG+A+ D F DRI+IG G+E A L VY+ K L +EL
Sbjct: 174 PEFLREGSALEDFFKPDRIVIGAGDER-----AASFLLDVYKAVDAPK--LVMKPREAEL 226
Query: 300 SKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQ 359
K A+N FLA +IS N + + + G D V +AVGLD RIG + A +GFGGSCF
Sbjct: 227 VKYASNVFLALKISFANEVGLLAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFP 286
Query: 360 KDILNLVYICECLNLPEVAS------------YWQQLYESLFNTVSDKHIAILGFAFKKN 407
KD L + E L L S Y QL E + +H+ +LG AFK N
Sbjct: 287 KDTLAFIRFGESLGLEMAISKAVLRVNEYMPRYAVQLLEERLGGLRGRHVGVLGLAFKPN 346
Query: 408 TGDTRESPAIHVCRTLLYEGAKLKIYDP-KVEPSQIIQDLKELDPELLDHNAVSILDDPY 466
T D RES + V R LL GA++ ++DP +E ++ + ++V+ ++DP
Sbjct: 347 TDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLG-----------DSVTYVEDPQ 395
Query: 467 DTVKNTHAIVVCTEWDEFVTLDYK 490
+ +++ T W ++ LDY+
Sbjct: 396 ALLDQVEGVIIATAWPQYEGLDYR 419
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 523 TVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEG 582
V+ +NEY R++ +++ + +H+ +LG AFK NT D RES + V R LL G
Sbjct: 308 AVLRVNEYM-PRYAVQLLEERLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERG 366
Query: 583 AKLKIYDPKLMSR 595
A++ ++DP M +
Sbjct: 367 ARVYVHDPMAMEK 379
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 184/358 (51%), Gaps = 39/358 (10%)
Query: 184 AADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKAN---HKTNVQFQILSN 240
+AD+ YV AAR I + ++V KSTVPV + I ++ + + F I SN
Sbjct: 95 SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASN 154
Query: 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRK-HILTTNTWSSEL 299
PEFL EG A+ D DR+++G + A E ++ +Y+ + +L + S+E+
Sbjct: 155 PEFLKEGNAIDDFMKPDRVVVGVDSD----RARELITSLYKPMLLNNFRVLFMDIASAEM 210
Query: 300 SKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQ 359
+K AANA LA RIS +N ++ +CE GADVS V +G DSRIG+KFL G+GGSCF
Sbjct: 211 TKYAANAMLATRISFMNDVANLCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFP 270
Query: 360 KDILNLV-------YICECLNLPEVASYWQQ--LYESLFNT-----VSDKHIAILGFAFK 405
KD+ L+ Y E L E + Q+ L++ F+T V + +AI G +FK
Sbjct: 271 KDVKALIRTAEDNGYRMEVLEAVERVNEKQKSILFDK-FSTYYKGNVQGRCVAIWGLSFK 329
Query: 406 KNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDP 465
T D RE+P++ + LL G ++++YDP +KE L D V D
Sbjct: 330 PGTDDMREAPSLVLIEKLLEVGCRVRVYDPVA--------MKEAQKRLGDK--VEYTTDM 379
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDA-----LLDIG 518
YD V+ A+ TEW EF D+ + + M + + DGR + A LL+IG
Sbjct: 380 YDAVRGAEALFHVTEWKEFRMPDWSALSQA-MAASLVIDGRNVYELPADSDFTLLNIG 436
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Query: 30 NIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVV-K 88
++ + VV YVG + + A N++ +D +I Q NS +PIYEPGL++++ +
Sbjct: 2 SLDIAVVGIGYVGLVSATCFAELGANVRC--IDTDRNKIEQLNSGTIPIYEPGLEKMIAR 59
Query: 89 KTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATD 148
+ L F T+I+ A+ +A +IFI+V TP G+ +AD+ YV AAR I +
Sbjct: 60 NVKAGRLRFGTEIEQAVPEADIIFIAVGTPA-----GEDGSADMSYVLDAARSIGRAMSR 114
Query: 149 NKIVVEKSTVPV 160
++V KSTVPV
Sbjct: 115 YILIVTKSTVPV 126
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ V +NE QK+ +K + V + +AI G +FK T D RE+P++ + LL
Sbjct: 290 LEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLE 349
Query: 581 EGAKLKIYDPKLM 593
G ++++YDP M
Sbjct: 350 VGCRVRVYDPVAM 362
>pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|B Chain B, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|C Chain C, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|D Chain D, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
Length = 436
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 148/318 (46%), Gaps = 22/318 (6%)
Query: 186 DLKYVEAAARMIA----EIATDNKIVVEKSTVPVRAAESIMNVLK--ANHKTNVQFQILS 239
DL Y+E R I E + + +VV + +P ++ +++ + K V F + +
Sbjct: 95 DLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGT 154
Query: 240 NPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSEL 299
NPEFL E TA+ D ++ + + GE + +E + + I RK + +E+
Sbjct: 155 NPEFLRESTAIKD-YDFPPMTVIGELDKQTGDLLEEIYRELDAPIIRKTVEV-----AEM 208
Query: 300 SKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAK--FLQASVGFGGSC 357
K N + A +++ N + + +A G D EV + D ++ +++ FGGSC
Sbjct: 209 IKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSC 268
Query: 358 FQKDILNLVYICECLNL--PEVASYWQ------QLYESLFNTVSDKHIAILGFAFKKNTG 409
KD+ L Y L++ P + S + Q L + + + +LG +FK T
Sbjct: 269 LPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTD 328
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469
D RESP + + L+ +G +L+I+D VE +++ KE + H + ++ D + V
Sbjct: 329 DLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVV 388
Query: 470 KNTHAIVVCTEWDEFVTL 487
++ +V+ + FV L
Sbjct: 389 ASSDVLVLGNGDELFVDL 406
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 31 IQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKT 90
+++++ YVG ++ + +V VD S +I N K PI EPGL+ ++++
Sbjct: 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG 58
Query: 91 RDVN-LFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIA----EI 145
R L +TD K A+ + + FI V TP+K G+ DL Y+E R I E
Sbjct: 59 RQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGD-----LDLGYIETVCREIGFAIREK 113
Query: 146 ATDNKIVVEKSTVP 159
+ + +VV + +P
Sbjct: 114 SERHTVVVRSTVLP 127
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 487 LDYKRIYEGMMKPAYIFDG-------RKILNHDALLDIGFNVHTVI---DLNEYQKTRFS 536
L+ R Y M+P + F G R + + LD+ + + + N+ QK
Sbjct: 251 LNLSRYY---MRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQVQKA--- 304
Query: 537 EKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYD 589
L + + + +LG +FK T D RESP + + L+ +G +L+I+D
Sbjct: 305 ----FDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFD 353
>pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|B Chain B, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|C Chain C, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|D Chain D, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MUU|A Chain A, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|B Chain B, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|C Chain C, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|D Chain D, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
Length = 436
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 142/318 (44%), Gaps = 22/318 (6%)
Query: 186 DLKYVEAAARMIA----EIATDNKIVVEKSTVPVRAAESIMNVLK--ANHKTNVQFQILS 239
DL Y+E R I E + + +VV + +P ++ +++ + K V F + +
Sbjct: 95 DLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGT 154
Query: 240 NPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSEL 299
NPEFL E TA+ D +IG + G + L +Y I+ +E
Sbjct: 155 NPEFLRESTAIKDYDFPPXTVIGELDKQTG----DLLEEIYREL--DAPIIRKTVEVAEX 208
Query: 300 SKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAK--FLQASVGFGGSC 357
K N + A +++ N + + +A G D EV + D ++ + + FGGSC
Sbjct: 209 IKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVXDVICQDHKLNLSRYYXRPGFAFGGSC 268
Query: 358 FQKDILNLVYICECLNL--PEVASYWQ------QLYESLFNTVSDKHIAILGFAFKKNTG 409
KD+ L Y L++ P + S + Q L + + + +LG +FK T
Sbjct: 269 LPKDVRALTYRASQLDVEHPXLGSLXRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTD 328
Query: 410 DTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469
D RESP + + L+ +G +L+I+D VE +++ KE + H + ++ D + V
Sbjct: 329 DLRESPLVELAEXLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVV 388
Query: 470 KNTHAIVVCTEWDEFVTL 487
++ +V+ + FV L
Sbjct: 389 ASSDVLVLGNGDELFVDL 406
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 32 QVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTR 91
++++ YVG ++ + +V VD S +I N K PI EPGL+ ++++ R
Sbjct: 2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59
Query: 92 DVN-LFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIA----EIA 146
L +TD K A+ + + FI V TP+K G+ DL Y+E R I E +
Sbjct: 60 QTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGD-----LDLGYIETVCREIGFAIREKS 114
Query: 147 TDNKIVVEKSTVP 159
+ +VV + +P
Sbjct: 115 ERHTVVVRSTVLP 127
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 543 LFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYD 589
L + + + +LG +FK T D RESP + + L+ +G +L+I+D
Sbjct: 307 LITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEXLIGKGYELRIFD 353
>pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
pdb|3G79|B Chain B, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
Length = 478
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 120/529 (22%), Positives = 200/529 (37%), Gaps = 116/529 (21%)
Query: 27 KCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-----VDKSEERIRQWNSNKLPIY-- 79
+ P ++ V+ YVG P + A P + + S +I N + P+
Sbjct: 15 RGPIKKIGVLGMGYVGIPAAVLFA-DAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGE 73
Query: 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA 139
EPGL+E++ K F T S I + + +++ TP F N K D +
Sbjct: 74 EPGLEELIGKVVKAGKFECTPDFSRISELDAVTLAIQTP---FANPKDLEPDFSALIDGI 130
Query: 140 RMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAE 199
R + + +VV +ST+ E +
Sbjct: 131 RNVGKYLKPGMLVVLESTITPGTTEGMAK------------------------------- 159
Query: 200 IATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRI 259
+I+ E+S + K F + PE + G + ++ DRI
Sbjct: 160 -----QILEEESGL----------------KAGEDFALAHAPERVMVGRLLKNIREHDRI 198
Query: 260 LIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLS 319
+GG + A+E +Y + ++ + ++E++K A N F +I++IN L+
Sbjct: 199 -VGGIDEASTKRAVE----LYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQLA 253
Query: 320 AVCEATGADVSEVAKAVGLDSRIGAKFLQA----SVGFGGSCFQKDILNL---VYICEC- 371
CEA G +V +V G+DS G +A G GG C KD +L V I
Sbjct: 254 LYCEAMGINVYDV--RTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGE 311
Query: 372 LNLPEVASYWQQL-------------------YESLFNTVSDKHIAILGFAFKKNTGDTR 412
L+ PE A L E L + +A+LG+AF K++ D R
Sbjct: 312 LDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDDAR 371
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472
+P+ L GA + ++DP V +++ V I D+ + V+N
Sbjct: 372 NTPSEPYRDLCLKAGASVMVHDPYV----------------VNYPGVEISDNLEEVVRNA 415
Query: 473 HAIVVCTEWDEFVTL--DYKRIYEGMMKPAYIFDGRKILNHDALLDIGF 519
AIVV + +L D+ + P I DGR ++ D + GF
Sbjct: 416 DAIVVLAGHSAYSSLKADWAKKVSAKANPV-IIDGRNVIEPDEFIGKGF 463
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 540 ISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDP 590
+ L + +A+LG+AF K++ D R +P+ L GA + ++DP
Sbjct: 344 LERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDP 394
>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase
pdb|3PJG|A Chain A, Crystal Structure Of Udp-Glucose Dehydrogenase From
Klebsiella Pneumoniae Complexed With Product
Udp-Glucuronic Acid
pdb|3PLN|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Udp-Glucose
pdb|3PLR|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Nadh And Udp-Glucose
Length = 424
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 26/276 (9%)
Query: 190 VEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTA 249
VEA R + EI N +++ KST+PV I L ++ ++ +PEFL EG A
Sbjct: 133 VEAVIRDVTEI-NPNAVMIIKSTIPVGFTRDIKERLGIDN-------VIFSPEFLREGRA 184
Query: 250 MTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHI--LTTNTWSSELSKLAANAF 307
+ D + RI+IG E A E + + + ++ I L T++ +E KL AN +
Sbjct: 185 LYDNLHPSRIVIG-----ERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTY 239
Query: 308 LAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVY 367
LA R++ N L + E+ G + ++ + V LD RIG + S G+GG C KD L+
Sbjct: 240 LALRVAYFNELDSYAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLA 299
Query: 368 ICECLN---LPEVASYWQQLYESLFNTVSDKHIAILG---FAFKKNTGDTRESPAIHVCR 421
E + + + + + + +++ + ++G K + + R S + +
Sbjct: 300 NYESVPNNIIAAIVDANRTRKDFIADSILARKPKVVGVYRLIMKSGSDNFRASSIQGIMK 359
Query: 422 TLLYEGAKLKIYDPKVEP-----SQIIQDLKELDPE 452
+ +G + IY+P ++ S++++DL E
Sbjct: 360 RIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQE 395
>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal
Six- Histidine Tag
Length = 432
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 130/276 (47%), Gaps = 26/276 (9%)
Query: 190 VEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTA 249
VEA R + EI N +++ KST+PV I L ++ ++ +PEFL EG A
Sbjct: 133 VEAVIRDVTEI-NPNAVMIIKSTIPVGFTRDIKERLGIDN-------VIFSPEFLREGRA 184
Query: 250 MTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHI--LTTNTWSSELSKLAANAF 307
+ D + RI+IG E A E + + + ++ I L T++ +E KL AN +
Sbjct: 185 LYDNLHPSRIVIG-----ERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTY 239
Query: 308 LAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVY 367
LA R++ N L + E+ G + ++ + V LD RIG + S G+GG C KD L+
Sbjct: 240 LALRVAYFNELDSYAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLA 299
Query: 368 ICECLN---LPEVASYWQQLYESLFNTVSDKHIAILG---FAFKKNTGDTRESPAIHVCR 421
E + + + + + + +++ + ++G K + + R S + +
Sbjct: 300 NYESVPNNIIAAIVDANRTRKDFIADSILARKPKVVGVYRLIMKSGSDNFRASSIQGIMK 359
Query: 422 TLLYEGAKLKIYDPKVEP-----SQIIQDLKELDPE 452
+ +G + IY+P ++ S++++DL E
Sbjct: 360 RIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQE 395
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 130/304 (42%), Gaps = 44/304 (14%)
Query: 156 STVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 215
S + AE ++ N+ + + + D ++VE + + + + +++ KST+P+
Sbjct: 67 SKAAYKEAELVIIATPTNYNSRINY----FDTQHVETVIKEVLSVNSHATLII-KSTIPI 121
Query: 216 RAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEE--TPEGYAAI 273
+ ++ +T+ +I+ +PEFL E A+ D RI++ EE +P+ A
Sbjct: 122 ----GFITEMRQKFQTD---RIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADA 174
Query: 274 ESLSWVYEHWIPRKHI--LTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSE 331
E + + + + ++ L +E KL AN +LA R++ N L E+ +
Sbjct: 175 EKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHM 234
Query: 332 VAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLF-- 389
+ + + D RIG + S G+GG C KD L + N+P Q L E++
Sbjct: 235 IIQGISYDDRIGMHYNNPSFGYGGYCLPKDTKQL--LANYNNIP------QTLIEAIVSS 286
Query: 390 NTVSDKHIA------------------ILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLK 431
N V +IA + K N+ + RES V L + K+
Sbjct: 287 NNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKII 346
Query: 432 IYDP 435
IY+P
Sbjct: 347 IYEP 350
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFN------VHTV 524
N+H I+ +D+ + + Y P++ + G + L +N + +
Sbjct: 231 NSHMIIQGISYDDRIGMHYNN-------PSFGYGGYCLPKDTKQLLANYNNIPQTLIEAI 283
Query: 525 IDLNEYQKTRFSEKIISSLFNTVSD-KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGA 583
+ N +K+ +++II+ L S K + + K N+ + RES V L +
Sbjct: 284 VSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDI 343
Query: 584 KLKIYDPKL 592
K+ IY+P L
Sbjct: 344 KIIIYEPML 352
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 129/304 (42%), Gaps = 44/304 (14%)
Query: 156 STVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 215
S + AE ++ N+ + + + D ++VE + + + + +++ KST+P+
Sbjct: 67 SKAAYKEAELVIIATPTNYNSRINY----FDTQHVETVIKEVLSVNSHATLII-KSTIPI 121
Query: 216 RAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEE--TPEGYAAI 273
+ ++ +T+ +I+ +PEFL E A+ D RI++ EE +P+ A
Sbjct: 122 ----GFITEMRQKFQTD---RIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADA 174
Query: 274 ESLSWVYEHWIPRKHI--LTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSE 331
E + + + + ++ L +E KL AN +LA R++ N L E+ +
Sbjct: 175 EKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHM 234
Query: 332 VAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLF-- 389
+ + + D RIG + S G+GG KD L + N+P Q L E++
Sbjct: 235 IIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQL--LANYNNIP------QTLIEAIVSS 286
Query: 390 NTVSDKHIA------------------ILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLK 431
N V +IA + K N+ + RES V L + K+
Sbjct: 287 NNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKII 346
Query: 432 IYDP 435
IY+P
Sbjct: 347 IYEP 350
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 14/129 (10%)
Query: 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFN------VHTV 524
N+H I+ +D+ + + Y P++ + G + L +N + +
Sbjct: 231 NSHMIIQGISYDDRIGMHYNN-------PSFGYGGYSLPKDTKQLLANYNNIPQTLIEAI 283
Query: 525 IDLNEYQKTRFSEKIISSLFNTVSD-KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGA 583
+ N +K+ +++II+ L S K + + K N+ + RES V L +
Sbjct: 284 VSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDI 343
Query: 584 KLKIYDPKL 592
K+ IY+P L
Sbjct: 344 KIIIYEPML 352
>pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJL|B Chain B, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJO|A Chain A, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
pdb|3OJO|B Chain B, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
Length = 431
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/495 (21%), Positives = 190/495 (38%), Gaps = 114/495 (23%)
Query: 32 QVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTR 91
++TVV Y+G PT + A + V VD +++ I + + ++ I EPGL EV ++
Sbjct: 13 KLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL 70
Query: 92 DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKI 151
+ + + + + I+V TP + + R+ D+ V
Sbjct: 71 SSG---KLKVSTTPEASDVFIIAVPTPNN---DDQYRSCDISLV---------------- 108
Query: 152 VVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKS 211
+RA +SI+ LK N I+VE +
Sbjct: 109 --------MRALDSILPFLKKG------------------------------NTIIVEST 130
Query: 212 TVPVRAAESIMNVLKANHKTNVQFQILSN------PEFLSEGTAMTDLFNADRILIGGEE 265
P + + V++ N+ F I + PE + G + +L + +RI IGG
Sbjct: 131 IAPKTMDDFVKPVIE-----NLGFTIGEDIYLVHCPERVLPGKILEELVHNNRI-IGGVT 184
Query: 266 TPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEAT 325
A IE+ VY ++ + ++ T+ ++E+SKL N + I+ N L+ +C
Sbjct: 185 K----ACIEAGKRVYRTFV-QGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNL 239
Query: 326 GADVSEVAKAVGLDSRIGAKFLQASVGFGGSCF--------QKDILN--LVYICECLNLP 375
+V +V + R+ Q G GG C KD N L+ +N
Sbjct: 240 NINVLDVIEMANKHPRVNIH--QPGPGVGGHCLAVDPYFIIAKDPENAKLIQTGREIN-N 296
Query: 376 EVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE-GAKLKIYD 434
+ +Y + + +S + + G +K + D RESPA + L E ++ YD
Sbjct: 297 SMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYD 356
Query: 435 PKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYE 494
P VE + D+ VK+ +++ ++ EF L +
Sbjct: 357 PHVELDFVEHDMSH-------------------AVKDASLVLILSDHSEFKNLSDSHFDK 397
Query: 495 GMMKPAYIFDGRKIL 509
MK IFD + ++
Sbjct: 398 --MKHKVIFDTKNVV 410
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose
Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV 60
M Q + I GAG++G + P++ VTV+DK G ++ A+ +++ V
Sbjct: 1 MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVV 60
Query: 61 VD 62
D
Sbjct: 61 GD 62
>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 220
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 116 NTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIM 167
+ P F +LK+V ++ R + + D K V ++ + P R SI+
Sbjct: 23 DLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSIL 74
>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
Length = 226
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 116 NTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIM 167
+ P F +LK+V ++ R + + D K V ++ + P R SI+
Sbjct: 23 DLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSIL 74
>pdb|4F8Q|A Chain A, Crystal Structure Of The Human Btn3a2 Ectodomain
Length = 219
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 116 NTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIM 167
+ P F +LK+V ++ R + + D K V ++ + P R SI+
Sbjct: 23 DLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSIL 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,135,208
Number of Sequences: 62578
Number of extensions: 699424
Number of successful extensions: 1961
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1809
Number of HSP's gapped (non-prelim): 77
length of query: 598
length of database: 14,973,337
effective HSP length: 104
effective length of query: 494
effective length of database: 8,465,225
effective search space: 4181821150
effective search space used: 4181821150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)