Query psy11160
Match_columns 598
No_of_seqs 481 out of 3881
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 19:33:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2666|consensus 100.0 3.2E-85 6.9E-90 651.0 39.2 441 5-527 1-469 (481)
2 COG1004 Ugd Predicted UDP-gluc 100.0 3.2E-84 6.9E-89 670.8 42.9 399 6-511 1-413 (414)
3 PLN02353 probable UDP-glucose 100.0 2E-81 4.4E-86 685.3 50.2 440 5-526 1-467 (473)
4 COG0677 WecC UDP-N-acetyl-D-ma 100.0 1.2E-78 2.6E-83 625.9 37.7 401 5-515 9-429 (436)
5 PRK15182 Vi polysaccharide bio 100.0 8.2E-71 1.8E-75 597.1 44.4 396 5-512 6-419 (425)
6 TIGR03026 NDP-sugDHase nucleot 100.0 6.5E-69 1.4E-73 582.9 45.6 396 6-507 1-411 (411)
7 PRK15057 UDP-glucose 6-dehydro 100.0 1.8E-68 3.9E-73 572.5 41.2 367 6-488 1-376 (388)
8 PRK11064 wecC UDP-N-acetyl-D-m 100.0 3.5E-66 7.6E-71 560.8 42.5 391 5-505 3-415 (415)
9 PF03721 UDPG_MGDP_dh_N: UDP-g 100.0 2E-35 4.4E-40 286.7 19.3 174 6-265 1-175 (185)
10 KOG2666|consensus 100.0 6.7E-32 1.5E-36 269.9 13.5 270 169-595 85-370 (481)
11 COG2084 MmsB 3-hydroxyisobutyr 100.0 9.7E-30 2.1E-34 259.7 27.2 241 6-375 1-254 (286)
12 PLN02353 probable UDP-glucose 100.0 1.1E-31 2.4E-36 294.0 13.4 280 171-594 87-369 (473)
13 PLN02858 fructose-bisphosphate 100.0 1.1E-27 2.3E-32 290.1 36.4 360 2-509 1-421 (1378)
14 COG1004 Ugd Predicted UDP-gluc 100.0 3.3E-30 7.2E-35 268.4 10.5 270 181-598 90-359 (414)
15 PRK15182 Vi polysaccharide bio 100.0 2.6E-29 5.6E-34 273.0 13.9 266 181-593 90-358 (425)
16 PRK11064 wecC UDP-N-acetyl-D-m 100.0 2.7E-28 5.8E-33 264.9 15.2 269 181-594 89-366 (415)
17 PRK15461 NADH-dependent gamma- 100.0 2.8E-26 6.1E-31 238.8 26.6 241 6-375 2-255 (296)
18 KOG0409|consensus 100.0 1.5E-26 3.2E-31 232.3 23.3 245 5-375 35-289 (327)
19 TIGR01505 tartro_sem_red 2-hyd 99.9 6.1E-26 1.3E-30 235.6 27.4 253 7-388 1-266 (291)
20 PRK11559 garR tartronate semia 99.9 1.4E-25 2.9E-30 233.4 28.6 242 5-375 2-255 (296)
21 PRK15059 tartronate semialdehy 99.9 2E-25 4.3E-30 231.9 27.4 240 6-375 1-252 (292)
22 TIGR01692 HIBADH 3-hydroxyisob 99.9 1.9E-25 4.1E-30 231.8 27.1 237 10-375 1-256 (288)
23 PRK15057 UDP-glucose 6-dehydro 99.9 6.8E-27 1.5E-31 251.3 15.1 251 182-594 89-341 (388)
24 COG0677 WecC UDP-N-acetyl-D-ma 99.9 1.8E-26 4E-31 239.3 11.0 214 245-594 150-367 (436)
25 PLN02858 fructose-bisphosphate 99.9 2.2E-23 4.7E-28 252.8 29.6 244 5-375 324-580 (1378)
26 TIGR03026 NDP-sugDHase nucleot 99.9 4.4E-25 9.6E-30 240.0 13.3 269 182-595 91-359 (411)
27 PLN02350 phosphogluconate dehy 99.9 1E-22 2.3E-27 223.6 25.9 250 4-375 5-282 (493)
28 PF03720 UDPG_MGDP_dh_C: UDP-g 99.9 4E-24 8.6E-29 189.3 10.5 106 398-511 1-106 (106)
29 PRK12490 6-phosphogluconate de 99.9 2.7E-22 5.8E-27 209.3 25.8 241 6-375 1-259 (299)
30 PRK09599 6-phosphogluconate de 99.9 4.4E-21 9.5E-26 200.3 26.0 241 6-375 1-260 (301)
31 PTZ00142 6-phosphogluconate de 99.8 1.1E-19 2.4E-24 199.4 24.0 208 6-337 2-219 (470)
32 TIGR00872 gnd_rel 6-phosphoglu 99.8 3.1E-19 6.7E-24 186.2 24.3 205 6-340 1-212 (298)
33 TIGR00873 gnd 6-phosphoglucona 99.8 1.7E-18 3.6E-23 190.2 22.8 207 7-337 1-216 (467)
34 PF00984 UDPG_MGDP_dh: UDP-glu 99.8 9.2E-20 2E-24 157.9 10.1 82 295-376 2-83 (96)
35 PRK00094 gpsA NAD(P)H-dependen 99.8 7E-18 1.5E-22 177.3 21.7 258 6-375 2-298 (325)
36 PF03446 NAD_binding_2: NAD bi 99.8 1.4E-18 3E-23 165.5 14.3 158 5-291 1-160 (163)
37 PRK09287 6-phosphogluconate de 99.7 1.1E-16 2.3E-21 175.3 22.5 197 16-337 1-208 (459)
38 PRK06129 3-hydroxyacyl-CoA deh 99.7 8.8E-15 1.9E-19 153.4 26.5 248 5-375 2-265 (308)
39 PRK14618 NAD(P)H-dependent gly 99.7 1.6E-15 3.5E-20 160.2 18.9 254 4-375 3-296 (328)
40 PRK12557 H(2)-dependent methyl 99.6 4E-14 8.6E-19 150.0 24.7 246 6-375 1-275 (342)
41 PRK14619 NAD(P)H-dependent gly 99.6 1E-13 2.2E-18 145.4 19.1 232 4-375 3-274 (308)
42 PRK07531 bifunctional 3-hydrox 99.5 3.9E-13 8.4E-18 149.7 22.6 210 3-341 2-222 (495)
43 PRK09260 3-hydroxybutyryl-CoA 99.5 1.3E-13 2.8E-18 143.2 17.5 212 5-338 1-219 (288)
44 PRK08229 2-dehydropantoate 2-r 99.5 5.1E-13 1.1E-17 141.7 22.2 269 5-388 2-316 (341)
45 COG1023 Gnd Predicted 6-phosph 99.5 1.4E-12 3.1E-17 127.6 20.3 208 6-342 1-215 (300)
46 COG0240 GpsA Glycerol-3-phosph 99.5 2E-12 4.3E-17 134.1 20.5 219 5-337 1-239 (329)
47 PRK08268 3-hydroxy-acyl-CoA de 99.5 5.3E-12 1.1E-16 140.8 22.7 205 3-338 5-224 (507)
48 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.5 1.6E-11 3.6E-16 136.5 26.5 213 4-339 4-223 (503)
49 PRK06130 3-hydroxybutyryl-CoA 99.4 8.6E-12 1.9E-16 130.9 20.1 212 2-339 1-219 (311)
50 PRK08293 3-hydroxybutyryl-CoA 99.4 6.2E-11 1.3E-15 123.1 25.8 118 5-162 3-127 (287)
51 PRK07819 3-hydroxybutyryl-CoA 99.4 3.4E-10 7.3E-15 117.6 29.0 117 1-163 1-128 (286)
52 PLN02545 3-hydroxybutyryl-CoA 99.4 6.6E-11 1.4E-15 123.3 22.2 210 3-338 2-221 (295)
53 PRK07417 arogenate dehydrogena 99.4 3.7E-11 8.1E-16 124.3 19.7 187 6-318 1-192 (279)
54 PRK07530 3-hydroxybutyryl-CoA 99.4 7.7E-11 1.7E-15 122.7 22.2 206 5-337 4-220 (292)
55 PRK08507 prephenate dehydrogen 99.3 2.1E-10 4.5E-15 118.4 22.8 203 6-341 1-211 (275)
56 PRK12439 NAD(P)H-dependent gly 99.3 1.3E-10 2.9E-15 123.6 21.1 218 4-336 6-244 (341)
57 PRK06035 3-hydroxyacyl-CoA deh 99.3 5.7E-10 1.2E-14 116.1 24.9 211 5-337 3-222 (291)
58 PRK12921 2-dehydropantoate 2-r 99.3 4.2E-10 9.1E-15 117.4 23.7 100 6-154 1-100 (305)
59 PRK08655 prephenate dehydrogen 99.3 4.2E-10 9E-15 123.6 24.1 205 6-341 1-207 (437)
60 PF01210 NAD_Gly3P_dh_N: NAD-d 99.3 1.2E-11 2.5E-16 117.2 10.2 102 7-156 1-103 (157)
61 PLN02688 pyrroline-5-carboxyla 99.3 3E-10 6.6E-15 116.4 20.7 96 6-162 1-102 (266)
62 PRK07066 3-hydroxybutyryl-CoA 99.3 7.1E-10 1.5E-14 116.7 23.5 210 5-340 7-224 (321)
63 PRK07679 pyrroline-5-carboxyla 99.3 4.2E-10 9.2E-15 116.4 21.5 102 5-166 3-110 (279)
64 PLN02712 arogenate dehydrogena 99.3 1.3E-08 2.9E-13 116.9 35.2 96 5-162 52-149 (667)
65 PF03720 UDPG_MGDP_dh_C: UDP-g 99.3 2.4E-12 5.2E-17 113.9 3.6 42 553-594 1-42 (106)
66 PRK14620 NAD(P)H-dependent gly 99.3 1.2E-09 2.6E-14 115.4 24.2 105 6-158 1-109 (326)
67 PTZ00345 glycerol-3-phosphate 99.3 1.7E-10 3.7E-15 123.3 17.7 227 5-337 11-266 (365)
68 TIGR03376 glycerol3P_DH glycer 99.2 2.2E-10 4.8E-15 121.6 17.7 101 7-155 1-115 (342)
69 PRK05808 3-hydroxybutyryl-CoA 99.2 1.6E-09 3.4E-14 112.3 22.3 110 5-160 3-121 (282)
70 COG0362 Gnd 6-phosphogluconate 99.2 4.3E-10 9.3E-15 117.5 17.8 207 6-337 4-220 (473)
71 PRK11199 tyrA bifunctional cho 99.2 6.6E-10 1.4E-14 119.7 19.8 182 4-334 97-279 (374)
72 TIGR01724 hmd_rel H2-forming N 99.2 6.3E-10 1.4E-14 114.8 15.5 103 6-168 1-128 (341)
73 PRK11880 pyrroline-5-carboxyla 99.1 4.2E-09 9.2E-14 108.0 21.1 94 5-159 2-98 (267)
74 PRK06522 2-dehydropantoate 2-r 99.1 2.1E-08 4.6E-13 104.4 24.6 98 6-154 1-98 (304)
75 PRK12491 pyrroline-5-carboxyla 99.1 1.5E-08 3.2E-13 104.6 20.2 88 6-153 3-94 (272)
76 PRK06476 pyrroline-5-carboxyla 99.0 1.3E-08 2.7E-13 104.2 17.9 98 6-166 1-101 (258)
77 COG1250 FadB 3-hydroxyacyl-CoA 99.0 1.9E-08 4.1E-13 104.6 17.3 213 4-339 2-221 (307)
78 PF03807 F420_oxidored: NADP o 99.0 3.5E-09 7.6E-14 91.4 10.0 87 7-154 1-92 (96)
79 PRK11730 fadB multifunctional 99.0 1.9E-07 4E-12 108.7 27.3 113 4-162 312-435 (715)
80 PRK07502 cyclohexadienyl dehyd 99.0 1.6E-07 3.6E-12 98.4 24.0 102 5-165 6-109 (307)
81 PRK07680 late competence prote 98.9 8.2E-08 1.8E-12 99.0 20.8 93 6-157 1-97 (273)
82 PF02737 3HCDH_N: 3-hydroxyacy 98.9 1.3E-08 2.8E-13 98.7 13.5 115 7-162 1-121 (180)
83 PRK07634 pyrroline-5-carboxyla 98.9 2.2E-07 4.9E-12 93.9 21.8 91 1-153 1-96 (245)
84 PRK06545 prephenate dehydrogen 98.9 5.3E-08 1.1E-12 104.5 18.0 105 6-167 1-106 (359)
85 TIGR01763 MalateDH_bact malate 98.9 5.9E-09 1.3E-13 109.3 8.6 122 6-164 2-125 (305)
86 PRK11154 fadJ multifunctional 98.8 2E-07 4.2E-12 108.5 21.2 118 4-162 308-432 (708)
87 TIGR02440 FadJ fatty oxidation 98.8 2.7E-07 5.8E-12 107.1 22.2 118 4-162 303-427 (699)
88 TIGR02437 FadB fatty oxidation 98.8 1.1E-06 2.3E-11 102.2 27.1 205 4-338 312-529 (714)
89 KOG2653|consensus 98.8 8.9E-08 1.9E-12 98.9 15.7 211 1-337 1-224 (487)
90 PRK06249 2-dehydropantoate 2-r 98.8 9.6E-07 2.1E-11 93.0 24.1 103 1-153 1-103 (313)
91 PF10727 Rossmann-like: Rossma 98.8 9.4E-09 2E-13 93.8 7.1 96 5-160 10-108 (127)
92 PRK08269 3-hydroxybutyryl-CoA 98.8 1.4E-07 3E-12 99.4 16.6 200 16-340 1-219 (314)
93 COG0287 TyrA Prephenate dehydr 98.8 7.2E-07 1.6E-11 92.2 20.3 100 5-163 3-105 (279)
94 TIGR02441 fa_ox_alpha_mit fatt 98.8 2.1E-07 4.5E-12 108.5 18.1 115 4-163 334-458 (737)
95 cd05294 LDH-like_MDH_nadp A la 98.7 5.6E-08 1.2E-12 102.1 10.3 125 6-163 1-129 (309)
96 PLN02256 arogenate dehydrogena 98.7 1.7E-06 3.7E-11 90.7 21.3 97 5-163 36-134 (304)
97 PF03721 UDPG_MGDP_dh_N: UDP-g 98.7 1.6E-08 3.5E-13 98.5 5.6 72 178-263 87-158 (185)
98 PTZ00431 pyrroline carboxylate 98.7 1.2E-06 2.6E-11 89.9 19.1 96 6-164 4-99 (260)
99 PLN02712 arogenate dehydrogena 98.7 1.7E-06 3.8E-11 99.6 21.9 93 5-159 369-463 (667)
100 PRK14806 bifunctional cyclohex 98.7 1.3E-06 2.9E-11 102.3 20.7 105 5-168 3-109 (735)
101 TIGR01915 npdG NADPH-dependent 98.7 2E-07 4.3E-12 93.1 12.0 97 6-154 1-99 (219)
102 PRK06223 malate dehydrogenase; 98.6 7.2E-08 1.6E-12 101.1 8.6 122 5-163 2-125 (307)
103 COG0345 ProC Pyrroline-5-carbo 98.6 3.5E-06 7.5E-11 86.2 20.0 88 5-153 1-92 (266)
104 PRK08818 prephenate dehydrogen 98.6 5E-06 1.1E-10 89.2 20.2 88 5-163 4-95 (370)
105 cd05292 LDH_2 A subgroup of L- 98.5 1.4E-06 3.1E-11 91.5 13.6 119 6-167 1-126 (308)
106 PRK06928 pyrroline-5-carboxyla 98.5 1E-06 2.3E-11 91.2 12.1 89 6-153 2-95 (277)
107 cd01339 LDH-like_MDH L-lactate 98.5 5.8E-07 1.3E-11 94.1 10.0 115 8-158 1-118 (300)
108 PF00056 Ldh_1_N: lactate/mala 98.5 9.4E-07 2E-11 82.3 10.1 123 6-164 1-125 (141)
109 PRK05479 ketol-acid reductoiso 98.4 9.5E-07 2.1E-11 93.1 10.8 98 5-163 17-115 (330)
110 COG2085 Predicted dinucleotide 98.4 1.4E-06 3E-11 85.4 10.0 94 5-159 1-95 (211)
111 cd00300 LDH_like L-lactate deh 98.4 1.3E-06 2.7E-11 91.6 9.6 121 8-166 1-124 (300)
112 PRK12480 D-lactate dehydrogena 98.3 4.2E-06 9E-11 88.8 12.3 92 6-160 147-238 (330)
113 PRK00066 ldh L-lactate dehydro 98.3 4E-06 8.7E-11 88.4 10.6 124 1-163 1-128 (315)
114 PF14833 NAD_binding_11: NAD-b 98.3 6.5E-06 1.4E-10 74.5 10.6 81 295-375 1-91 (122)
115 cd05291 HicDH_like L-2-hydroxy 98.3 4.8E-06 1E-10 87.5 11.1 124 6-167 1-127 (306)
116 PRK08605 D-lactate dehydrogena 98.2 5.8E-06 1.3E-10 87.8 10.7 105 5-170 146-250 (332)
117 PRK13403 ketol-acid reductoiso 98.2 8.3E-06 1.8E-10 85.2 10.9 91 6-158 17-108 (335)
118 PTZ00082 L-lactate dehydrogena 98.2 5.4E-06 1.2E-10 87.6 9.8 119 4-158 5-131 (321)
119 cd05293 LDH_1 A subgroup of L- 98.2 7.5E-06 1.6E-10 86.2 10.7 120 5-163 3-126 (312)
120 PF02153 PDH: Prephenate dehyd 98.2 8.1E-05 1.8E-09 76.3 18.0 78 55-166 11-89 (258)
121 PRK13243 glyoxylate reductase; 98.1 1.3E-05 2.9E-10 85.2 11.3 104 5-169 150-253 (333)
122 TIGR00465 ilvC ketol-acid redu 98.1 1.7E-05 3.6E-10 83.6 11.7 97 5-162 3-100 (314)
123 cd00650 LDH_MDH_like NAD-depen 98.1 1.3E-05 2.8E-10 82.3 10.6 124 8-168 1-130 (263)
124 cd01065 NAD_bind_Shikimate_DH 98.1 1.2E-05 2.5E-10 75.3 9.4 103 5-162 19-122 (155)
125 PRK07574 formate dehydrogenase 98.1 2.1E-05 4.5E-10 85.0 12.5 105 6-169 193-297 (385)
126 PLN03139 formate dehydrogenase 98.1 2.4E-05 5.1E-10 84.5 12.2 105 5-168 199-303 (386)
127 COG0039 Mdh Malate/lactate deh 98.1 3.2E-05 7E-10 80.8 12.3 128 6-169 1-130 (313)
128 PTZ00117 malate dehydrogenase; 98.1 1.5E-05 3.3E-10 84.2 10.1 119 4-158 4-125 (319)
129 PRK05708 2-dehydropantoate 2-r 98.1 1.1E-05 2.5E-10 84.6 8.7 99 5-153 2-101 (305)
130 PF02558 ApbA: Ketopantoate re 98.1 7E-06 1.5E-10 76.6 6.4 98 8-153 1-98 (151)
131 COG1893 ApbA Ketopantoate redu 98.0 2.2E-05 4.8E-10 82.5 9.8 98 6-153 1-98 (307)
132 PRK13302 putative L-aspartate 98.0 4.8E-05 1.1E-09 78.6 11.8 72 5-118 6-78 (271)
133 KOG2304|consensus 98.0 5.3E-06 1.2E-10 81.4 4.3 110 3-153 9-129 (298)
134 PLN02602 lactate dehydrogenase 98.0 3.5E-05 7.7E-10 82.3 11.0 125 6-166 38-163 (350)
135 TIGR00745 apbA_panE 2-dehydrop 98.0 0.00025 5.4E-09 73.3 17.1 90 16-154 2-91 (293)
136 PRK13304 L-aspartate dehydroge 98.0 6.2E-05 1.3E-09 77.5 11.9 69 6-117 2-71 (265)
137 COG4007 Predicted dehydrogenas 98.0 0.001 2.2E-08 66.7 19.6 104 5-163 1-124 (340)
138 cd05290 LDH_3 A subgroup of L- 98.0 3.8E-05 8.2E-10 80.7 10.1 123 7-168 1-130 (307)
139 cd05297 GH4_alpha_glucosidase_ 98.0 8.9E-05 1.9E-09 81.4 13.4 83 6-119 1-86 (423)
140 PF07991 IlvN: Acetohydroxy ac 97.9 5.8E-05 1.3E-09 71.3 9.8 92 5-158 4-97 (165)
141 TIGR02853 spore_dpaA dipicolin 97.9 3.5E-05 7.6E-10 80.2 9.2 95 6-163 152-247 (287)
142 PRK14194 bifunctional 5,10-met 97.9 3.3E-05 7.1E-10 80.4 8.0 75 5-159 159-234 (301)
143 PRK06436 glycerate dehydrogena 97.9 5.7E-05 1.2E-09 79.2 9.8 102 5-170 122-223 (303)
144 PRK05442 malate dehydrogenase; 97.9 0.0001 2.2E-09 78.0 11.8 136 2-167 1-140 (326)
145 PF01408 GFO_IDH_MocA: Oxidore 97.8 0.00029 6.3E-09 62.8 11.5 71 6-119 1-74 (120)
146 PRK15469 ghrA bifunctional gly 97.8 9.2E-05 2E-09 78.0 9.3 94 6-160 137-230 (312)
147 PRK15076 alpha-galactosidase; 97.8 0.00023 5E-09 78.3 12.8 82 6-118 2-86 (431)
148 PRK13581 D-3-phosphoglycerate 97.8 0.00013 2.9E-09 82.2 10.8 103 5-168 140-242 (526)
149 PF02826 2-Hacid_dh_C: D-isome 97.8 0.0003 6.5E-09 68.0 11.9 93 5-157 36-128 (178)
150 cd01337 MDH_glyoxysomal_mitoch 97.7 9.8E-05 2.1E-09 77.6 9.0 115 6-162 1-122 (310)
151 TIGR01759 MalateDH-SF1 malate 97.7 0.00038 8.3E-09 73.7 13.3 130 5-168 3-140 (323)
152 cd01338 MDH_choloroplast_like 97.7 0.00015 3.3E-09 76.7 10.0 129 6-168 3-139 (322)
153 PRK08306 dipicolinate synthase 97.7 0.00022 4.8E-09 74.6 11.0 96 5-162 152-247 (296)
154 TIGR01327 PGDH D-3-phosphoglyc 97.7 0.00017 3.6E-09 81.4 10.7 101 6-168 139-241 (525)
155 PLN00112 malate dehydrogenase 97.6 0.00026 5.7E-09 77.6 10.5 131 6-166 101-235 (444)
156 COG0569 TrkA K+ transport syst 97.6 0.00027 6E-09 71.0 8.7 41 6-73 1-41 (225)
157 TIGR01772 MDH_euk_gproteo mala 97.5 0.00033 7.1E-09 73.8 9.5 116 7-162 1-121 (312)
158 TIGR01757 Malate-DH_plant mala 97.5 0.0004 8.7E-09 75.0 10.3 124 6-163 45-176 (387)
159 PTZ00325 malate dehydrogenase; 97.5 0.00059 1.3E-08 72.1 11.2 122 4-167 7-135 (321)
160 PRK14188 bifunctional 5,10-met 97.5 0.00025 5.4E-09 73.9 8.0 74 5-159 158-233 (296)
161 PRK00257 erythronate-4-phospha 97.5 0.00033 7.2E-09 75.6 9.2 104 5-168 116-219 (381)
162 TIGR00112 proC pyrroline-5-car 97.5 0.0066 1.4E-07 61.7 18.2 67 54-153 8-74 (245)
163 KOG2711|consensus 97.5 0.00054 1.2E-08 71.4 10.0 108 6-154 22-137 (372)
164 PRK06141 ornithine cyclodeamin 97.5 0.00064 1.4E-08 71.8 10.8 75 5-117 125-199 (314)
165 cd05213 NAD_bind_Glutamyl_tRNA 97.5 0.00077 1.7E-08 71.1 11.0 100 5-163 178-279 (311)
166 cd00704 MDH Malate dehydrogena 97.5 0.00037 7.9E-09 73.9 8.4 130 7-166 2-135 (323)
167 TIGR02371 ala_DH_arch alanine 97.5 0.00093 2E-08 70.9 11.5 101 5-162 128-228 (325)
168 PRK14179 bifunctional 5,10-met 97.4 0.00035 7.6E-09 72.3 7.5 75 5-159 158-233 (284)
169 TIGR02853 spore_dpaA dipicolin 97.4 0.0023 5E-08 66.7 13.8 164 394-591 1-183 (287)
170 PLN00106 malate dehydrogenase 97.4 0.00071 1.5E-08 71.6 9.8 115 5-161 18-139 (323)
171 cd01336 MDH_cytoplasmic_cytoso 97.4 0.00062 1.3E-08 72.2 9.0 134 6-167 3-138 (325)
172 PRK11790 D-3-phosphoglycerate 97.4 0.00097 2.1E-08 72.9 10.7 100 6-168 152-251 (409)
173 COG1748 LYS9 Saccharopine dehy 97.3 0.0022 4.7E-08 69.2 12.8 133 5-222 1-134 (389)
174 COG0111 SerA Phosphoglycerate 97.3 0.00099 2.1E-08 70.6 9.6 95 5-160 142-237 (324)
175 PRK04148 hypothetical protein; 97.3 0.0018 3.9E-08 59.6 10.0 95 5-156 17-111 (134)
176 PF02056 Glyco_hydro_4: Family 97.3 0.0062 1.3E-07 59.2 13.9 145 7-216 1-148 (183)
177 PLN02928 oxidoreductase family 97.3 0.00091 2E-08 71.6 8.7 104 6-157 160-263 (347)
178 PRK15438 erythronate-4-phospha 97.3 0.00087 1.9E-08 72.3 8.6 103 5-167 116-218 (378)
179 PRK05086 malate dehydrogenase; 97.3 0.0012 2.7E-08 69.5 9.6 120 6-164 1-125 (312)
180 TIGR01771 L-LDH-NAD L-lactate 97.2 0.00058 1.2E-08 71.6 6.8 121 10-167 1-123 (299)
181 PF00670 AdoHcyase_NAD: S-aden 97.2 0.0041 8.9E-08 59.1 11.4 88 6-158 24-112 (162)
182 TIGR01758 MDH_euk_cyt malate d 97.2 0.0013 2.9E-08 69.6 9.0 132 7-168 1-136 (324)
183 TIGR00936 ahcY adenosylhomocys 97.2 0.0028 6.1E-08 68.9 11.3 90 5-158 195-284 (406)
184 PF01488 Shikimate_DH: Shikima 97.2 0.0019 4.2E-08 59.5 8.7 75 5-119 12-87 (135)
185 TIGR00507 aroE shikimate 5-deh 97.1 0.0012 2.7E-08 68.0 8.0 105 5-163 117-221 (270)
186 PTZ00075 Adenosylhomocysteinas 97.1 0.0021 4.6E-08 70.9 9.9 89 5-158 254-343 (476)
187 smart00859 Semialdhyde_dh Semi 97.1 0.0016 3.5E-08 58.6 7.5 99 7-159 1-102 (122)
188 PF13460 NAD_binding_10: NADH( 97.1 0.001 2.2E-08 63.6 6.5 100 8-159 1-101 (183)
189 TIGR01921 DAP-DH diaminopimela 97.1 0.0039 8.5E-08 65.7 11.0 87 5-156 3-91 (324)
190 cd01075 NAD_bind_Leu_Phe_Val_D 97.1 0.0018 4E-08 63.8 8.0 41 6-73 29-69 (200)
191 PRK05476 S-adenosyl-L-homocyst 97.1 0.0038 8.2E-08 68.4 11.0 89 5-158 212-301 (425)
192 cd00401 AdoHcyase S-adenosyl-L 97.1 0.0044 9.6E-08 67.6 11.5 88 5-156 202-289 (413)
193 KOG2305|consensus 97.0 0.0016 3.4E-08 64.4 7.0 112 5-161 3-126 (313)
194 PRK15409 bifunctional glyoxyla 97.0 0.003 6.5E-08 67.0 9.7 92 6-158 146-238 (323)
195 PRK00048 dihydrodipicolinate r 97.0 0.014 2.9E-07 60.0 14.2 155 6-227 2-167 (257)
196 PRK08410 2-hydroxyacid dehydro 97.0 0.003 6.5E-08 66.6 9.5 92 5-160 145-236 (311)
197 cd05298 GH4_GlvA_pagL_like Gly 97.0 0.022 4.7E-07 62.9 16.4 169 6-244 1-172 (437)
198 PRK09496 trkA potassium transp 97.0 0.0024 5.3E-08 70.3 9.1 73 6-117 1-75 (453)
199 PRK08306 dipicolinate synthase 96.9 0.012 2.6E-07 61.6 13.3 165 394-592 2-185 (296)
200 COG1712 Predicted dinucleotide 96.9 0.004 8.7E-08 61.7 9.0 68 6-115 1-68 (255)
201 KOG1495|consensus 96.9 0.0031 6.8E-08 63.9 8.3 79 5-121 20-102 (332)
202 KOG1502|consensus 96.9 0.0053 1.2E-07 64.5 10.4 122 1-160 1-133 (327)
203 PLN02819 lysine-ketoglutarate 96.9 0.0079 1.7E-07 72.4 13.1 89 4-119 568-660 (1042)
204 COG1052 LdhA Lactate dehydroge 96.9 0.0051 1.1E-07 65.2 10.2 95 5-160 146-240 (324)
205 TIGR00518 alaDH alanine dehydr 96.9 0.004 8.7E-08 67.3 9.6 106 6-163 168-274 (370)
206 PRK08618 ornithine cyclodeamin 96.9 0.0076 1.6E-07 64.0 11.4 101 5-162 127-227 (325)
207 PLN02494 adenosylhomocysteinas 96.9 0.0053 1.1E-07 67.7 10.3 88 5-157 254-342 (477)
208 PRK05225 ketol-acid reductoiso 96.8 0.0026 5.6E-08 69.4 7.3 91 5-157 36-132 (487)
209 TIGR01035 hemA glutamyl-tRNA r 96.8 0.0032 6.9E-08 69.2 7.9 72 5-119 180-252 (417)
210 PF01118 Semialdhyde_dh: Semia 96.8 0.0027 5.8E-08 57.4 5.9 20 7-26 1-21 (121)
211 COG2910 Putative NADH-flavin r 96.8 0.008 1.7E-07 57.9 9.2 72 6-118 1-73 (211)
212 PRK11579 putative oxidoreducta 96.8 0.0077 1.7E-07 64.3 10.3 71 3-119 2-76 (346)
213 PRK08291 ectoine utilization p 96.7 0.009 1.9E-07 63.5 10.7 77 5-118 132-208 (330)
214 cd05296 GH4_P_beta_glucosidase 96.7 0.014 3.1E-07 64.0 12.4 84 6-119 1-87 (419)
215 PF03446 NAD_binding_2: NAD bi 96.7 0.0036 7.9E-08 59.5 6.8 105 395-521 2-115 (163)
216 COG0673 MviM Predicted dehydro 96.7 0.039 8.4E-07 58.2 14.8 73 4-120 2-80 (342)
217 PRK07340 ornithine cyclodeamin 96.7 0.0062 1.3E-07 64.1 8.6 100 5-163 125-224 (304)
218 TIGR00036 dapB dihydrodipicoli 96.7 0.039 8.4E-07 56.9 14.2 162 6-227 2-177 (266)
219 PLN02306 hydroxypyruvate reduc 96.6 0.0067 1.4E-07 65.8 8.8 105 6-156 166-272 (386)
220 PRK06046 alanine dehydrogenase 96.6 0.014 3.1E-07 61.9 11.1 101 5-162 129-229 (326)
221 PRK00045 hemA glutamyl-tRNA re 96.6 0.005 1.1E-07 67.8 7.8 72 5-119 182-254 (423)
222 cd05197 GH4_glycoside_hydrolas 96.6 0.044 9.4E-07 60.3 15.1 82 6-117 1-84 (425)
223 PLN00203 glutamyl-tRNA reducta 96.6 0.0052 1.1E-07 69.1 7.8 74 5-118 266-340 (519)
224 PRK06932 glycerate dehydrogena 96.6 0.0067 1.5E-07 64.1 8.2 88 6-158 148-235 (314)
225 PRK13303 L-aspartate dehydroge 96.5 0.029 6.2E-07 57.8 12.4 21 6-26 2-22 (265)
226 PRK06823 ornithine cyclodeamin 96.5 0.025 5.4E-07 59.8 12.2 101 5-162 128-228 (315)
227 PRK06407 ornithine cyclodeamin 96.5 0.012 2.6E-07 61.8 9.7 76 5-117 117-192 (301)
228 PF02826 2-Hacid_dh_C: D-isome 96.5 0.011 2.4E-07 57.1 8.7 93 391-506 33-127 (178)
229 PRK06487 glycerate dehydrogena 96.5 0.0098 2.1E-07 62.9 8.9 89 6-160 149-237 (317)
230 PF02423 OCD_Mu_crystall: Orni 96.5 0.014 3E-07 61.7 9.9 76 5-118 128-203 (313)
231 PF02254 TrkA_N: TrkA-N domain 96.5 0.032 7E-07 49.3 10.9 70 8-117 1-72 (116)
232 CHL00194 ycf39 Ycf39; Provisio 96.5 0.016 3.4E-07 60.9 10.2 73 6-117 1-74 (317)
233 KOG2380|consensus 96.4 0.0098 2.1E-07 62.1 7.9 92 6-159 53-146 (480)
234 TIGR02992 ectoine_eutC ectoine 96.4 0.02 4.3E-07 60.8 10.5 76 5-118 129-205 (326)
235 PRK03659 glutathione-regulated 96.4 0.015 3.3E-07 66.9 10.2 74 5-118 400-475 (601)
236 PRK12549 shikimate 5-dehydroge 96.4 0.014 3.1E-07 60.7 9.0 75 6-118 128-203 (284)
237 PF01113 DapB_N: Dihydrodipico 96.4 0.02 4.3E-07 52.1 8.8 98 6-159 1-101 (124)
238 TIGR02354 thiF_fam2 thiamine b 96.3 0.028 6E-07 55.5 10.4 33 5-64 21-54 (200)
239 PRK09496 trkA potassium transp 96.3 0.034 7.3E-07 61.3 12.1 42 5-73 231-272 (453)
240 PRK02318 mannitol-1-phosphate 96.3 0.0047 1E-07 67.0 4.9 43 6-75 1-44 (381)
241 PRK04207 glyceraldehyde-3-phos 96.2 0.033 7.1E-07 59.6 10.8 85 5-117 1-88 (341)
242 PRK00436 argC N-acetyl-gamma-g 96.2 0.021 4.5E-07 61.1 9.2 22 5-26 2-24 (343)
243 PRK00258 aroE shikimate 5-dehy 96.1 0.015 3.2E-07 60.3 7.7 104 6-163 124-228 (278)
244 PRK07574 formate dehydrogenase 96.1 0.025 5.5E-07 61.3 9.6 101 392-514 190-294 (385)
245 PRK06444 prephenate dehydrogen 96.1 0.013 2.8E-07 57.8 6.7 21 6-26 1-22 (197)
246 PRK07589 ornithine cyclodeamin 96.1 0.027 5.9E-07 60.2 9.7 75 5-117 129-203 (346)
247 PRK10669 putative cation:proto 96.1 0.034 7.4E-07 63.4 11.2 73 6-118 418-492 (558)
248 COG0111 SerA Phosphoglycerate 96.1 0.026 5.7E-07 59.8 9.5 93 392-507 140-234 (324)
249 COG0059 IlvC Ketol-acid reduct 96.1 0.029 6.2E-07 58.1 9.3 91 6-158 19-111 (338)
250 TIGR00561 pntA NAD(P) transhyd 96.1 0.041 8.9E-07 61.6 11.2 117 6-162 165-290 (511)
251 cd01080 NAD_bind_m-THF_DH_Cycl 96.1 0.016 3.5E-07 55.6 7.0 54 5-118 44-98 (168)
252 PF01262 AlaDh_PNT_C: Alanine 96.1 0.018 4E-07 55.0 7.4 113 6-159 21-142 (168)
253 COG0686 Ald Alanine dehydrogen 96.0 0.016 3.4E-07 60.1 7.1 98 6-156 169-268 (371)
254 PRK13940 glutamyl-tRNA reducta 96.0 0.017 3.6E-07 63.4 7.8 73 5-119 181-254 (414)
255 TIGR01850 argC N-acetyl-gamma- 96.0 0.028 6E-07 60.3 9.2 21 6-26 1-22 (346)
256 cd01078 NAD_bind_H4MPT_DH NADP 96.0 0.046 9.9E-07 53.3 9.8 75 5-118 28-108 (194)
257 PRK03562 glutathione-regulated 95.9 0.041 8.9E-07 63.5 10.8 74 5-118 400-475 (621)
258 PRK09310 aroDE bifunctional 3- 95.9 0.022 4.8E-07 63.6 8.4 92 5-163 332-423 (477)
259 PLN03139 formate dehydrogenase 95.9 0.036 7.8E-07 60.2 9.6 102 391-514 196-301 (386)
260 PRK08300 acetaldehyde dehydrog 95.9 0.064 1.4E-06 56.2 10.9 96 1-159 1-104 (302)
261 PRK06199 ornithine cyclodeamin 95.9 0.04 8.6E-07 59.8 9.7 77 5-117 155-233 (379)
262 COG0373 HemA Glutamyl-tRNA red 95.9 0.024 5.2E-07 61.7 7.9 72 5-119 178-250 (414)
263 COG2423 Predicted ornithine cy 95.9 0.035 7.6E-07 58.9 9.0 103 5-163 130-232 (330)
264 PRK14189 bifunctional 5,10-met 95.9 0.028 6E-07 58.4 8.0 74 5-158 158-232 (285)
265 PRK15438 erythronate-4-phospha 95.8 0.095 2.1E-06 56.7 12.0 97 391-514 113-217 (378)
266 PRK09424 pntA NAD(P) transhydr 95.8 0.088 1.9E-06 59.1 12.1 112 5-158 165-287 (509)
267 KOG0069|consensus 95.7 0.069 1.5E-06 56.6 10.4 103 5-168 162-265 (336)
268 PRK14106 murD UDP-N-acetylmura 95.7 0.21 4.7E-06 55.0 14.9 116 5-169 5-128 (450)
269 TIGR03215 ac_ald_DH_ac acetald 95.7 0.058 1.2E-06 56.2 9.6 92 6-159 2-98 (285)
270 TIGR01327 PGDH D-3-phosphoglyc 95.7 0.054 1.2E-06 61.3 10.1 100 392-514 136-239 (525)
271 COG1486 CelF Alpha-galactosida 95.7 0.05 1.1E-06 59.4 9.3 82 5-116 3-86 (442)
272 PRK12475 thiamine/molybdopteri 95.6 0.089 1.9E-06 56.2 11.1 40 6-72 25-65 (338)
273 PRK14175 bifunctional 5,10-met 95.5 0.054 1.2E-06 56.3 8.7 74 5-158 158-232 (286)
274 PRK11908 NAD-dependent epimera 95.5 0.048 1E-06 57.9 8.7 40 6-72 2-43 (347)
275 PRK13301 putative L-aspartate 95.5 0.077 1.7E-06 54.4 9.6 67 5-115 2-70 (267)
276 TIGR01761 thiaz-red thiazoliny 95.5 0.12 2.6E-06 55.3 11.5 105 5-168 3-109 (343)
277 PF10100 DUF2338: Uncharacteri 95.5 0.57 1.2E-05 50.6 16.3 259 5-340 1-284 (429)
278 PLN02968 Probable N-acetyl-gam 95.5 0.048 1E-06 59.2 8.5 96 5-158 38-136 (381)
279 cd05295 MDH_like Malate dehydr 95.4 0.16 3.4E-06 56.2 12.2 134 6-168 124-261 (452)
280 PRK13243 glyoxylate reductase; 95.3 0.09 1.9E-06 56.1 9.7 99 392-514 148-250 (333)
281 PLN02695 GDP-D-mannose-3',5'-e 95.3 0.045 9.9E-07 59.0 7.5 38 1-65 17-55 (370)
282 PRK12480 D-lactate dehydrogena 95.2 0.088 1.9E-06 56.1 9.5 94 392-511 144-241 (330)
283 PF03059 NAS: Nicotianamine sy 95.2 0.13 2.7E-06 53.3 10.1 110 6-161 122-235 (276)
284 PRK00257 erythronate-4-phospha 95.2 0.19 4.1E-06 54.5 11.9 97 391-514 113-217 (381)
285 PRK05479 ketol-acid reductoiso 95.2 0.14 3.1E-06 54.3 10.6 156 391-569 14-195 (330)
286 PRK03369 murD UDP-N-acetylmura 95.1 0.33 7.1E-06 54.5 14.1 71 5-119 12-82 (488)
287 PRK15409 bifunctional glyoxyla 95.1 0.11 2.5E-06 55.0 9.9 99 392-514 143-246 (323)
288 PRK10792 bifunctional 5,10-met 95.1 0.079 1.7E-06 55.0 8.3 74 5-158 159-233 (285)
289 PF03435 Saccharop_dh: Sacchar 95.1 0.071 1.5E-06 57.7 8.4 73 8-118 1-78 (386)
290 PRK00683 murD UDP-N-acetylmura 95.1 0.048 1E-06 59.8 7.1 35 6-67 4-38 (418)
291 PRK03803 murD UDP-N-acetylmura 95.0 0.33 7.2E-06 53.7 13.5 118 1-169 2-128 (448)
292 PRK06270 homoserine dehydrogen 95.0 0.26 5.7E-06 52.7 12.2 22 5-26 2-23 (341)
293 PRK14191 bifunctional 5,10-met 95.0 0.093 2E-06 54.5 8.3 74 5-158 157-231 (285)
294 COG2084 MmsB 3-hydroxyisobutyr 95.0 0.087 1.9E-06 54.8 8.1 106 395-521 1-116 (286)
295 PRK13403 ketol-acid reductoiso 94.9 0.1 2.3E-06 55.0 8.7 89 391-501 13-101 (335)
296 PRK13581 D-3-phosphoglycerate 94.9 0.12 2.6E-06 58.6 9.9 98 392-513 138-239 (526)
297 PRK08410 2-hydroxyacid dehydro 94.9 0.11 2.4E-06 54.8 8.9 87 392-505 143-231 (311)
298 PRK10206 putative oxidoreducta 94.9 0.096 2.1E-06 56.0 8.5 71 6-119 2-76 (344)
299 PLN03075 nicotianamine synthas 94.8 0.18 3.8E-06 52.8 9.9 106 5-156 124-233 (296)
300 PLN02928 oxidoreductase family 94.8 0.13 2.7E-06 55.3 9.1 110 392-514 157-272 (347)
301 PRK01438 murD UDP-N-acetylmura 94.8 0.41 8.9E-06 53.4 13.6 34 5-65 16-49 (480)
302 PRK08040 putative semialdehyde 94.7 0.14 3.1E-06 54.6 9.1 34 4-37 3-38 (336)
303 PF02882 THF_DHG_CYH_C: Tetrah 94.7 0.17 3.6E-06 48.2 8.7 76 5-160 36-112 (160)
304 PRK01710 murD UDP-N-acetylmura 94.6 0.4 8.7E-06 53.2 13.1 111 6-170 15-138 (458)
305 PRK06718 precorrin-2 dehydroge 94.6 0.23 4.9E-06 49.1 9.8 33 5-64 10-42 (202)
306 PRK12409 D-amino acid dehydrog 94.6 0.043 9.2E-07 59.7 5.2 33 6-65 2-34 (410)
307 cd05191 NAD_bind_amino_acid_DH 94.6 0.18 3.8E-06 42.6 7.9 22 5-26 23-44 (86)
308 PRK06719 precorrin-2 dehydroge 94.6 0.16 3.4E-06 48.2 8.2 38 6-72 14-51 (157)
309 TIGR02356 adenyl_thiF thiazole 94.6 0.34 7.4E-06 47.8 11.0 40 6-72 22-62 (202)
310 PLN02214 cinnamoyl-CoA reducta 94.6 0.18 3.8E-06 53.7 9.6 76 4-116 9-90 (342)
311 PF00070 Pyr_redox: Pyridine n 94.5 0.061 1.3E-06 44.6 4.8 33 7-66 1-33 (80)
312 COG0451 WcaG Nucleoside-diphos 94.5 0.084 1.8E-06 54.5 6.9 37 7-70 2-39 (314)
313 PRK14194 bifunctional 5,10-met 94.5 0.23 5E-06 52.0 10.0 76 391-506 156-231 (301)
314 PLN02427 UDP-apiose/xylose syn 94.5 0.096 2.1E-06 56.5 7.5 80 5-116 14-95 (386)
315 cd01487 E1_ThiF_like E1_ThiF_l 94.5 0.091 2E-06 50.7 6.5 40 7-73 1-41 (174)
316 COG0002 ArgC Acetylglutamate s 94.4 0.13 2.9E-06 54.4 8.0 22 5-26 2-24 (349)
317 COG1063 Tdh Threonine dehydrog 94.4 0.28 6.2E-06 52.5 10.8 99 7-161 171-274 (350)
318 PRK00421 murC UDP-N-acetylmura 94.4 0.51 1.1E-05 52.4 13.1 110 5-168 7-126 (461)
319 PRK03806 murD UDP-N-acetylmura 94.3 0.69 1.5E-05 51.0 13.9 38 1-65 1-39 (438)
320 PRK06436 glycerate dehydrogena 94.3 0.18 3.9E-06 53.0 8.8 95 392-513 120-218 (303)
321 PRK11790 D-3-phosphoglycerate 94.3 0.19 4.2E-06 55.1 9.3 94 392-511 149-246 (409)
322 PRK01581 speE spermidine synth 94.2 0.84 1.8E-05 49.1 13.7 116 5-160 151-272 (374)
323 PRK00711 D-amino acid dehydrog 94.2 0.058 1.3E-06 58.6 5.1 34 6-66 1-34 (416)
324 PLN02989 cinnamyl-alcohol dehy 94.2 0.14 3.1E-06 53.5 7.9 41 1-68 1-42 (325)
325 PRK05671 aspartate-semialdehyd 94.2 0.18 3.8E-06 53.9 8.6 25 1-26 1-26 (336)
326 PLN00141 Tic62-NAD(P)-related 94.2 0.43 9.2E-06 48.2 11.1 40 5-71 17-57 (251)
327 PRK14192 bifunctional 5,10-met 94.2 0.16 3.5E-06 52.9 8.0 75 5-159 159-234 (283)
328 PRK14176 bifunctional 5,10-met 94.2 0.2 4.3E-06 52.1 8.6 74 5-158 164-238 (287)
329 PRK14874 aspartate-semialdehyd 94.2 0.15 3.2E-06 54.4 7.9 22 5-26 1-23 (334)
330 PRK08163 salicylate hydroxylas 94.2 0.056 1.2E-06 58.3 4.8 38 1-66 1-38 (396)
331 PLN02662 cinnamyl-alcohol dehy 94.1 0.14 3.1E-06 53.3 7.6 80 5-116 4-85 (322)
332 KOG1494|consensus 94.1 0.17 3.8E-06 51.8 7.7 117 4-155 27-145 (345)
333 TIGR03466 HpnA hopanoid-associ 94.1 0.071 1.5E-06 55.5 5.3 72 6-116 1-73 (328)
334 PRK08605 D-lactate dehydrogena 94.1 0.21 4.5E-06 53.3 8.8 91 392-507 144-237 (332)
335 PRK04308 murD UDP-N-acetylmura 94.1 0.78 1.7E-05 50.7 13.8 114 5-170 5-131 (445)
336 PRK02705 murD UDP-N-acetylmura 94.1 0.51 1.1E-05 52.3 12.3 32 7-65 2-33 (459)
337 PRK06349 homoserine dehydrogen 94.1 0.19 4.2E-06 55.4 8.8 77 5-117 3-82 (426)
338 PRK08664 aspartate-semialdehyd 94.0 0.3 6.4E-06 52.4 10.0 22 5-26 3-25 (349)
339 PF02629 CoA_binding: CoA bind 94.0 0.15 3.3E-06 44.0 6.4 69 4-118 2-73 (96)
340 PRK07494 2-octaprenyl-6-methox 94.0 0.059 1.3E-06 58.1 4.6 38 1-65 3-40 (388)
341 PRK02472 murD UDP-N-acetylmura 94.0 0.82 1.8E-05 50.4 13.7 115 4-170 4-129 (447)
342 PRK08644 thiamine biosynthesis 94.0 0.17 3.7E-06 50.4 7.4 41 6-73 29-70 (212)
343 PRK05472 redox-sensing transcr 94.0 0.078 1.7E-06 52.7 5.1 71 5-118 84-157 (213)
344 PRK14183 bifunctional 5,10-met 94.0 0.21 4.6E-06 51.8 8.3 73 6-158 158-231 (281)
345 PRK06487 glycerate dehydrogena 94.0 0.2 4.3E-06 53.0 8.3 91 392-511 146-240 (317)
346 PF05368 NmrA: NmrA-like famil 93.9 0.54 1.2E-05 46.8 11.0 72 8-118 1-75 (233)
347 PRK00141 murD UDP-N-acetylmura 93.9 0.52 1.1E-05 52.7 11.9 38 5-69 15-52 (473)
348 TIGR01809 Shik-DH-AROM shikima 93.9 0.18 3.8E-06 52.5 7.7 72 6-118 126-201 (282)
349 PRK01390 murD UDP-N-acetylmura 93.9 0.68 1.5E-05 51.4 12.9 39 6-71 10-48 (460)
350 PLN03209 translocon at the inn 93.9 0.21 4.6E-06 56.7 8.8 40 6-72 81-121 (576)
351 PRK12490 6-phosphogluconate de 93.8 0.3 6.5E-06 51.1 9.4 93 396-510 2-98 (299)
352 PRK14179 bifunctional 5,10-met 93.8 0.35 7.5E-06 50.3 9.6 76 391-506 155-230 (284)
353 PRK07045 putative monooxygenas 93.8 0.069 1.5E-06 57.6 4.7 39 1-66 1-39 (388)
354 PLN02650 dihydroflavonol-4-red 93.8 0.31 6.7E-06 51.8 9.7 84 1-116 1-86 (351)
355 COG0665 DadA Glycine/D-amino a 93.8 0.078 1.7E-06 56.7 5.1 36 3-65 2-37 (387)
356 PRK06847 hypothetical protein; 93.8 0.067 1.5E-06 57.2 4.6 38 2-66 1-38 (375)
357 PRK07236 hypothetical protein; 93.8 0.078 1.7E-06 57.3 5.0 34 5-65 6-39 (386)
358 PRK09599 6-phosphogluconate de 93.7 0.35 7.5E-06 50.7 9.6 104 396-521 2-115 (301)
359 PRK15469 ghrA bifunctional gly 93.7 0.25 5.4E-06 52.2 8.5 99 392-514 134-236 (312)
360 PRK14573 bifunctional D-alanyl 93.7 0.76 1.6E-05 54.9 13.5 113 3-169 2-124 (809)
361 PRK02006 murD UDP-N-acetylmura 93.7 0.69 1.5E-05 51.9 12.5 34 5-65 7-40 (498)
362 COG1064 AdhP Zn-dependent alco 93.6 0.58 1.3E-05 49.8 11.0 42 5-73 167-208 (339)
363 COG1052 LdhA Lactate dehydroge 93.6 0.42 9.1E-06 50.8 10.0 99 391-513 143-245 (324)
364 TIGR01470 cysG_Nterm siroheme 93.6 0.56 1.2E-05 46.5 10.3 34 5-65 9-42 (205)
365 TIGR03649 ergot_EASG ergot alk 93.6 0.21 4.5E-06 51.4 7.6 35 7-68 1-36 (285)
366 TIGR01087 murD UDP-N-acetylmur 93.5 0.83 1.8E-05 50.2 12.6 107 7-168 1-121 (433)
367 PF13241 NAD_binding_7: Putati 93.5 0.27 5.8E-06 43.1 7.0 89 5-160 7-95 (103)
368 COG4408 Uncharacterized protei 93.4 5.3 0.00011 42.2 17.1 265 2-340 1-286 (431)
369 PRK06728 aspartate-semialdehyd 93.4 0.25 5.4E-06 52.9 7.9 31 1-32 1-32 (347)
370 PRK06932 glycerate dehydrogena 93.3 0.29 6.3E-06 51.7 8.3 93 392-512 145-241 (314)
371 cd05212 NAD_bind_m-THF_DH_Cycl 93.3 0.8 1.7E-05 42.6 10.2 60 391-484 25-84 (140)
372 COG2344 AT-rich DNA-binding pr 93.3 0.12 2.6E-06 50.1 4.7 70 4-117 83-156 (211)
373 PLN02383 aspartate semialdehyd 93.3 0.28 6.1E-06 52.6 8.1 24 3-26 5-29 (344)
374 PRK04663 murD UDP-N-acetylmura 93.2 1.1 2.4E-05 49.5 13.0 113 5-169 7-128 (438)
375 TIGR01082 murC UDP-N-acetylmur 93.2 0.9 2E-05 50.3 12.4 108 7-168 1-118 (448)
376 PRK06753 hypothetical protein; 93.2 0.094 2E-06 56.1 4.4 34 6-66 1-34 (373)
377 PRK11559 garR tartronate semia 93.2 0.34 7.4E-06 50.4 8.5 95 395-510 3-100 (296)
378 cd01079 NAD_bind_m-THF_DH NAD 93.2 0.33 7.1E-06 47.6 7.6 90 5-158 62-158 (197)
379 PRK08773 2-octaprenyl-3-methyl 93.1 0.11 2.3E-06 56.2 4.7 23 4-26 5-27 (392)
380 PF01494 FAD_binding_3: FAD bi 93.0 0.099 2.1E-06 54.6 4.2 34 6-66 2-35 (356)
381 PRK15461 NADH-dependent gamma- 93.0 0.41 9E-06 50.0 8.8 95 395-510 2-99 (296)
382 PLN02306 hydroxypyruvate reduc 93.0 0.47 1E-05 51.6 9.4 111 392-514 163-282 (386)
383 PF00984 UDPG_MGDP_dh: UDP-glu 92.9 0.029 6.3E-07 48.8 -0.0 43 328-389 2-44 (96)
384 PRK05868 hypothetical protein; 92.9 0.1 2.2E-06 56.3 4.2 35 5-66 1-35 (372)
385 PRK14982 acyl-ACP reductase; P 92.9 0.26 5.7E-06 52.6 7.1 70 5-118 155-226 (340)
386 TIGR01505 tartro_sem_red 2-hyd 92.9 0.35 7.6E-06 50.2 8.0 93 396-509 1-96 (291)
387 PLN02657 3,8-divinyl protochlo 92.8 0.42 9E-06 52.0 8.8 38 4-68 59-97 (390)
388 PRK07688 thiamine/molybdopteri 92.8 0.2 4.4E-06 53.5 6.2 42 6-74 25-67 (339)
389 PRK11863 N-acetyl-gamma-glutam 92.7 0.41 8.9E-06 50.5 8.3 22 5-26 2-24 (313)
390 cd05212 NAD_bind_m-THF_DH_Cycl 92.7 0.75 1.6E-05 42.8 9.1 37 100-156 64-100 (140)
391 PF12847 Methyltransf_18: Meth 92.7 0.62 1.3E-05 40.4 8.2 106 5-156 2-111 (112)
392 COG0771 MurD UDP-N-acetylmuram 92.7 1.2 2.6E-05 49.2 12.1 36 5-67 7-42 (448)
393 TIGR01546 GAPDH-II_archae glyc 92.7 0.51 1.1E-05 50.2 8.9 85 8-119 1-87 (333)
394 PLN00198 anthocyanidin reducta 92.6 0.36 7.8E-06 50.9 7.8 36 5-67 9-45 (338)
395 PRK08850 2-octaprenyl-6-methox 92.6 0.15 3.2E-06 55.5 4.9 36 1-64 1-36 (405)
396 PF01266 DAO: FAD dependent ox 92.5 0.17 3.8E-06 52.8 5.3 31 7-64 1-31 (358)
397 PRK06185 hypothetical protein; 92.5 0.14 3E-06 55.6 4.6 35 4-65 5-39 (407)
398 PLN02986 cinnamyl-alcohol dehy 92.5 0.68 1.5E-05 48.4 9.7 84 1-116 1-86 (322)
399 TIGR01851 argC_other N-acetyl- 92.5 0.5 1.1E-05 49.8 8.4 21 6-26 2-23 (310)
400 COG0654 UbiH 2-polyprenyl-6-me 92.5 0.15 3.2E-06 55.3 4.7 33 5-64 2-34 (387)
401 PF01210 NAD_Gly3P_dh_N: NAD-d 92.4 0.69 1.5E-05 43.6 8.7 92 396-499 1-96 (157)
402 PLN02583 cinnamoyl-CoA reducta 92.4 0.57 1.2E-05 48.7 8.9 34 5-65 6-40 (297)
403 PLN02256 arogenate dehydrogena 92.4 4.9 0.00011 42.3 15.9 94 392-508 34-129 (304)
404 PRK12809 putative oxidoreducta 92.4 0.35 7.5E-06 56.2 7.9 35 5-66 310-344 (639)
405 PLN02896 cinnamyl-alcohol dehy 92.3 0.65 1.4E-05 49.4 9.3 40 5-71 10-50 (353)
406 PF02882 THF_DHG_CYH_C: Tetrah 92.3 1.4 3E-05 42.1 10.4 88 383-510 25-112 (160)
407 PRK14178 bifunctional 5,10-met 92.2 0.46 1E-05 49.3 7.7 73 6-158 153-226 (279)
408 KOG2741|consensus 92.2 1.3 2.9E-05 46.9 11.1 77 4-120 5-85 (351)
409 PRK14173 bifunctional 5,10-met 92.2 0.59 1.3E-05 48.7 8.4 73 6-158 156-229 (287)
410 PRK12769 putative oxidoreducta 92.2 0.55 1.2E-05 54.6 9.2 34 5-65 327-360 (654)
411 PRK07538 hypothetical protein; 92.1 0.15 3.3E-06 55.6 4.3 34 6-66 1-34 (413)
412 PRK08020 ubiF 2-octaprenyl-3-m 92.1 0.16 3.5E-06 54.7 4.5 26 1-26 1-26 (391)
413 PRK07588 hypothetical protein; 92.1 0.15 3.3E-06 54.9 4.3 34 6-66 1-34 (391)
414 TIGR01777 yfcH conserved hypot 92.1 0.32 6.8E-06 49.7 6.4 67 8-118 1-68 (292)
415 TIGR01318 gltD_gamma_fam gluta 92.1 0.57 1.2E-05 52.3 8.8 34 5-65 141-174 (467)
416 PRK14190 bifunctional 5,10-met 92.0 0.66 1.4E-05 48.3 8.6 74 5-158 158-232 (284)
417 PRK06126 hypothetical protein; 92.0 0.17 3.7E-06 57.3 4.7 34 5-65 7-40 (545)
418 PRK12771 putative glutamate sy 92.0 0.46 1E-05 54.2 8.2 33 5-64 137-169 (564)
419 PLN02686 cinnamoyl-CoA reducta 91.9 0.67 1.4E-05 49.9 9.0 41 4-71 52-93 (367)
420 PRK14188 bifunctional 5,10-met 91.9 0.95 2E-05 47.5 9.6 76 391-506 155-230 (296)
421 KOG0022|consensus 91.9 0.54 1.2E-05 49.2 7.6 44 3-73 191-235 (375)
422 PRK06182 short chain dehydroge 91.8 1.1 2.4E-05 45.6 10.1 42 5-73 3-45 (273)
423 PRK11728 hydroxyglutarate oxid 91.8 0.21 4.5E-06 54.1 4.9 21 6-26 3-23 (393)
424 PRK12814 putative NADPH-depend 91.8 0.34 7.3E-06 56.4 6.9 35 5-66 193-227 (652)
425 PRK12320 hypothetical protein; 91.8 1 2.2E-05 52.6 10.7 34 6-66 1-35 (699)
426 cd00757 ThiF_MoeB_HesA_family 91.8 0.35 7.6E-06 48.6 6.1 41 6-73 22-63 (228)
427 PLN00135 malate dehydrogenase 91.7 1.1 2.5E-05 47.2 10.2 112 46-168 5-119 (309)
428 PLN02350 phosphogluconate dehy 91.7 0.78 1.7E-05 51.5 9.3 115 394-523 6-130 (493)
429 PTZ00142 6-phosphogluconate de 91.6 0.9 1.9E-05 50.8 9.7 114 395-523 2-124 (470)
430 PRK08849 2-octaprenyl-3-methyl 91.6 0.2 4.4E-06 54.0 4.6 21 6-26 4-24 (384)
431 PTZ00245 ubiquitin activating 91.6 1.4 3.1E-05 45.0 10.1 115 6-164 27-149 (287)
432 PRK05335 tRNA (uracil-5-)-meth 91.5 0.21 4.6E-06 54.8 4.6 35 5-66 2-36 (436)
433 PRK15059 tartronate semialdehy 91.5 0.72 1.6E-05 48.2 8.4 93 396-510 2-97 (292)
434 PF13450 NAD_binding_8: NAD(P) 91.5 0.32 6.9E-06 39.3 4.5 29 10-65 1-29 (68)
435 PRK07364 2-octaprenyl-6-methox 91.5 0.2 4.4E-06 54.3 4.4 34 6-66 19-52 (415)
436 cd05211 NAD_bind_Glu_Leu_Phe_V 91.5 0.52 1.1E-05 47.2 6.9 22 5-26 23-44 (217)
437 PRK11259 solA N-methyltryptoph 91.5 0.23 5E-06 53.0 4.8 33 6-65 4-36 (376)
438 PRK14170 bifunctional 5,10-met 91.5 0.76 1.7E-05 47.8 8.3 72 6-157 158-230 (284)
439 PRK04690 murD UDP-N-acetylmura 91.4 2.7 5.9E-05 46.9 13.4 112 6-170 9-136 (468)
440 PRK12779 putative bifunctional 91.4 0.26 5.5E-06 59.7 5.5 34 5-65 306-339 (944)
441 KOG1399|consensus 91.4 0.22 4.8E-06 55.2 4.6 41 4-71 5-45 (448)
442 TIGR03219 salicylate_mono sali 91.3 0.2 4.4E-06 54.5 4.2 21 6-26 1-21 (414)
443 TIGR00978 asd_EA aspartate-sem 91.3 1 2.2E-05 48.1 9.5 21 6-26 1-22 (341)
444 PRK14180 bifunctional 5,10-met 91.3 0.82 1.8E-05 47.5 8.3 72 6-157 159-231 (282)
445 PRK14186 bifunctional 5,10-met 91.3 0.8 1.7E-05 48.0 8.3 72 6-157 159-231 (297)
446 PRK15181 Vi polysaccharide bio 91.3 0.35 7.6E-06 51.5 5.9 34 5-65 15-49 (348)
447 cd05311 NAD_bind_2_malic_enz N 91.2 1.4 3.1E-05 44.3 9.9 74 6-116 26-106 (226)
448 TIGR02360 pbenz_hydroxyl 4-hyd 91.2 0.24 5.2E-06 53.7 4.6 34 6-66 3-36 (390)
449 PRK09126 hypothetical protein; 91.2 0.22 4.8E-06 53.6 4.3 37 1-66 1-37 (392)
450 PRK14169 bifunctional 5,10-met 91.2 0.83 1.8E-05 47.5 8.3 72 6-157 157-229 (282)
451 PRK08013 oxidoreductase; Provi 91.1 0.24 5.2E-06 53.8 4.5 34 6-66 4-37 (400)
452 TIGR03736 PRTRC_ThiF PRTRC sys 91.0 0.54 1.2E-05 47.9 6.6 56 3-74 9-64 (244)
453 PRK06617 2-octaprenyl-6-methox 91.0 0.25 5.4E-06 53.1 4.5 21 6-26 2-22 (374)
454 PF00899 ThiF: ThiF family; I 91.0 0.28 6.1E-06 44.9 4.2 40 5-71 2-42 (135)
455 PRK12548 shikimate 5-dehydroge 91.0 1.1 2.4E-05 46.7 9.2 40 6-72 127-170 (289)
456 PRK05653 fabG 3-ketoacyl-(acyl 91.0 0.57 1.2E-05 46.2 6.8 45 1-72 1-46 (246)
457 cd01080 NAD_bind_m-THF_DH_Cycl 91.0 1.1 2.5E-05 42.9 8.5 90 382-511 32-121 (168)
458 PLN02516 methylenetetrahydrofo 90.9 0.92 2E-05 47.5 8.3 72 6-157 168-240 (299)
459 PRK14166 bifunctional 5,10-met 90.8 0.95 2.1E-05 47.1 8.3 72 6-157 158-230 (282)
460 PRK14177 bifunctional 5,10-met 90.8 0.98 2.1E-05 47.0 8.4 72 6-157 160-232 (284)
461 PRK12749 quinate/shikimate deh 90.8 1.4 3E-05 46.0 9.6 41 6-73 125-169 (288)
462 TIGR01377 soxA_mon sarcosine o 90.8 0.29 6.2E-06 52.4 4.7 20 7-26 2-21 (380)
463 PRK05732 2-octaprenyl-6-methox 90.8 0.31 6.7E-06 52.4 4.9 33 5-64 3-38 (395)
464 PF13380 CoA_binding_2: CoA bi 90.7 0.87 1.9E-05 40.9 6.9 84 6-156 1-88 (116)
465 PRK06475 salicylate hydroxylas 90.6 0.27 5.8E-06 53.4 4.3 34 6-66 3-36 (400)
466 PRK05714 2-octaprenyl-3-methyl 90.5 0.26 5.7E-06 53.4 4.2 33 6-65 3-35 (405)
467 PRK14187 bifunctional 5,10-met 90.5 1 2.2E-05 47.0 8.2 72 6-157 161-233 (294)
468 COG3349 Uncharacterized conser 90.3 0.19 4.1E-06 55.7 2.8 50 6-82 1-53 (485)
469 TIGR01373 soxB sarcosine oxida 90.3 0.38 8.2E-06 52.2 5.1 22 5-26 30-51 (407)
470 PTZ00188 adrenodoxin reductase 90.3 0.58 1.3E-05 52.3 6.6 86 6-118 40-137 (506)
471 COG1232 HemY Protoporphyrinoge 90.3 0.32 7E-06 53.7 4.5 40 6-45 1-41 (444)
472 PRK06598 aspartate-semialdehyd 90.2 1.7 3.6E-05 47.0 9.8 21 6-26 2-24 (369)
473 KOG2614|consensus 90.2 0.33 7.1E-06 52.5 4.4 34 5-65 2-35 (420)
474 TIGR00872 gnd_rel 6-phosphoglu 90.2 1.3 2.7E-05 46.4 8.8 92 396-509 2-96 (298)
475 TIGR03364 HpnW_proposed FAD de 90.1 0.36 7.9E-06 51.4 4.8 31 7-64 2-32 (365)
476 KOG3124|consensus 90.1 0.66 1.4E-05 47.2 6.2 37 102-153 56-92 (267)
477 TIGR02622 CDP_4_6_dhtase CDP-g 90.1 0.84 1.8E-05 48.4 7.5 36 5-67 4-40 (349)
478 PRK07608 ubiquinone biosynthes 90.1 0.33 7.1E-06 52.1 4.4 23 4-26 4-26 (388)
479 PLN02172 flavin-containing mon 90.1 0.33 7.3E-06 54.1 4.5 35 5-66 10-44 (461)
480 COG0460 ThrA Homoserine dehydr 90.0 1.5 3.2E-05 46.7 9.0 22 5-26 3-24 (333)
481 PRK13394 3-hydroxybutyrate deh 90.0 3.9 8.4E-05 40.9 11.9 40 6-72 8-48 (262)
482 PRK08243 4-hydroxybenzoate 3-m 90.0 0.36 7.8E-06 52.3 4.6 34 6-66 3-36 (392)
483 TIGR01988 Ubi-OHases Ubiquinon 90.0 0.31 6.7E-06 52.0 4.1 33 7-66 1-33 (385)
484 PRK11199 tyrA bifunctional cho 89.9 2.9 6.3E-05 45.3 11.6 79 394-508 98-177 (374)
485 cd01076 NAD_bind_1_Glu_DH NAD( 89.9 1.2 2.6E-05 44.9 8.0 22 5-26 31-52 (227)
486 PRK05993 short chain dehydroge 89.8 0.79 1.7E-05 46.9 6.8 43 4-73 3-46 (277)
487 TIGR01296 asd_B aspartate-semi 89.8 0.67 1.5E-05 49.6 6.4 20 7-26 1-21 (339)
488 PRK06153 hypothetical protein; 89.8 0.2 4.4E-06 54.1 2.4 41 6-73 177-218 (393)
489 COG1233 Phytoene dehydrogenase 89.8 0.38 8.2E-06 54.0 4.7 33 5-64 3-35 (487)
490 cd01483 E1_enzyme_family Super 89.8 0.37 8E-06 44.5 3.9 40 7-73 1-41 (143)
491 PRK05600 thiamine biosynthesis 89.8 1.3 2.7E-05 48.1 8.6 41 6-73 42-83 (370)
492 PRK14172 bifunctional 5,10-met 89.8 1.3 2.8E-05 45.9 8.2 72 6-157 159-231 (278)
493 PRK14027 quinate/shikimate deh 89.7 2 4.4E-05 44.7 9.7 41 6-73 128-169 (283)
494 PLN02897 tetrahydrofolate dehy 89.7 1.2 2.7E-05 47.4 8.1 72 6-157 215-287 (345)
495 cd05213 NAD_bind_Glutamyl_tRNA 89.6 6.4 0.00014 41.5 13.5 120 391-529 175-298 (311)
496 PRK14171 bifunctional 5,10-met 89.6 1.3 2.9E-05 46.1 8.1 72 6-157 160-232 (288)
497 COG0493 GltD NADPH-dependent g 89.5 1.2 2.5E-05 49.7 8.2 88 5-119 123-220 (457)
498 PRK14173 bifunctional 5,10-met 89.5 2.2 4.7E-05 44.5 9.7 77 391-507 152-228 (287)
499 PLN02927 antheraxanthin epoxid 89.5 0.41 9E-06 55.6 4.8 35 4-65 80-114 (668)
500 PRK01747 mnmC bifunctional tRN 89.5 0.39 8.5E-06 55.9 4.7 33 6-65 261-293 (662)
No 1
>KOG2666|consensus
Probab=100.00 E-value=3.2e-85 Score=650.98 Aligned_cols=441 Identities=70% Similarity=1.134 Sum_probs=405.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++|||+||+||||.|++.++|.+| +.++|+++|+|..++..||+..+|||||||+
T Consensus 1 ~~kiccigagyvggptcavia~kc-------------------------p~i~vtvvd~s~~ri~~wnsd~lpiyepgld 55 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKC-------------------------PDIEVTVVDISVPRINAWNSDKLPIYEPGLD 55 (481)
T ss_pred CceEEEecCcccCCcchheeeecC-------------------------CceEEEEEecCchHhhcccCCCCcccCCCHH
Confidence 479999999998766666666655 5558999999999999999999999999999
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++++++++.+++|++|.+.++++||+|||+|+||.+..|.++++.+|++|++++.++|+......+|||.+||||+.+++
T Consensus 56 evv~~crgknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aae 135 (481)
T KOG2666|consen 56 EVVKQCRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAE 135 (481)
T ss_pred HHHHHhcCCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
.+..+ |... +.|..|+++++|||+
T Consensus 136 si~~i-------------------------------------------------------l~~n-~~~i~fqilsnpefl 159 (481)
T KOG2666|consen 136 SIEKI-------------------------------------------------------LNHN-SKGIKFQILSNPEFL 159 (481)
T ss_pred HHHHH-------------------------------------------------------HhcC-CCCceeEeccChHHh
Confidence 77653 3221 246779999999999
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEA 324 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~ 324 (598)
.+|.++.++++|+||++||.+..++..|.+.++.+|+.+.+..+++.+...++|+.||+.|+|++.+|+.+|.++++|++
T Consensus 160 aegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salcea 239 (481)
T KOG2666|consen 160 AEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEA 239 (481)
T ss_pred cccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHH---------------HHHHh
Q psy11160 325 TGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQL---------------YESLF 389 (598)
Q Consensus 325 ~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~---------------i~~~~ 389 (598)
.|+|..||..+++.++|||+.||+.+.||||+||+||+-.|..+|+.+|+|++++||+++ |.+++
T Consensus 240 tgadv~eva~avg~d~rig~kfl~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyqkrrfa~rii~smF 319 (481)
T KOG2666|consen 240 TGADVSEVAYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQKRRFANRIISSMF 319 (481)
T ss_pred cCCCHHHHHHHhcccccccHHHhhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999764 66777
Q ss_pred cccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhccc-----ccc--------cCC
Q psy11160 390 NTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELD-----PEL--------LDH 456 (598)
Q Consensus 390 ~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~-----~~~--------~~~ 456 (598)
+.+.+|||+|||||||.+|+|+||||++.+++.|++.++++.+|||.+..+++..+|..+. |.+ ..
T Consensus 320 NTVsdKKIAIlGFAFKKdTgdtREt~AI~Vck~Lled~A~LsIYDPqV~~eQI~~DLs~~~~dwdhp~~l~~~s~~~V~- 398 (481)
T KOG2666|consen 320 NTVSDKKIAILGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEEQIQRDLSMPKFDWDHPLHLQPMSPTTVS- 398 (481)
T ss_pred hccccceEEEEEeEeecCCCCcccCcHHHHHHHHhhccceeeecCCCCCHHHHHHhcccccccccCcccccccChhhhh-
Confidence 8899999999999999999999999999999999999999999999999999998884320 000 11
Q ss_pred CceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccch
Q psy11160 457 NAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDL 527 (598)
Q Consensus 457 ~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~i 527 (598)
..+.+..|+|+|.++|.+++|+|.|++|+++|+++|.+.|.+|.+||||||++|.+++++.||..+++|..
T Consensus 399 k~VtV~sD~Y~A~k~AHai~ilTEWDeFk~Ldy~rI~~~MqkPAfiFDGR~ilD~~kLreIGF~v~sIGk~ 469 (481)
T KOG2666|consen 399 KQVTVTSDAYEATKDAHAICILTEWDEFKELDYQRIFDNMQKPAFIFDGRNILDHEKLREIGFIVYSIGKP 469 (481)
T ss_pred heeeeecchhhhhcccceEEEEechHhhhccCHHHHHHhccCCeEEecchhhccHHHHhhcceEEEEcCCC
Confidence 25678999999999999999999999999999999999999999999999999999999999999998854
No 2
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.2e-84 Score=670.81 Aligned_cols=399 Identities=40% Similarity=0.639 Sum_probs=353.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||.||||+..|.+||+ .||+|+++|++++|++.+|+|.+||+||||++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~---------------------------~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ 53 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE---------------------------LGHEVVCVDIDESKVELLNKGISPIYEPGLEE 53 (414)
T ss_pred CceEEECCchHHHHHHHHHHH---------------------------cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHH
Confidence 699999999999999999999 89999999999999999999999999999999
Q ss_pred HHhhhcC-CceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRD-VNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++++... ++++||+|++++++++|++|||||||.++++ ..|+++++++++.|++.++..++||++|||||||++
T Consensus 54 ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~ 128 (414)
T COG1004 54 LLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTE 128 (414)
T ss_pred HHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCCCC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchH
Confidence 9997664 5699999999999999999999999997654 799999999999999999888999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
.+... +.... .+.+|.++++|||+
T Consensus 129 ~v~~~-------------------------------------------------------i~~~~-~~~~f~v~~NPEFL 152 (414)
T COG1004 129 EVRAK-------------------------------------------------------IREEN-SGKDFEVASNPEFL 152 (414)
T ss_pred HHHHH-------------------------------------------------------HHhhc-ccCCceEecChHHh
Confidence 77652 22211 24589999999999
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhccc-CCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWI-PRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~-~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
++|.|++++++|+||++|..+. ++.+.+++||+++. ...++..++..+||++|+++|+|++++|+|+||+..+|+
T Consensus 153 REG~Av~D~~~PdRIViG~~~~----~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice 228 (414)
T COG1004 153 REGSAVYDFLYPDRIVIGVRSE----RAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICE 228 (414)
T ss_pred cCcchhhhccCCCeEEEccCCh----hHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764 46778899998763 235778899999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh-HHHHH-----------HHHHHHHhcc
Q psy11160 324 ATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE-VASYW-----------QQLYESLFNT 391 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~-~~~~~-----------~~~i~~~~~~ 391 (598)
+.|+|..++++.++.|+|||++|+++|+||||+|||||+++|...|+++|.+. +-+.+ -+.+.....
T Consensus 229 ~~g~D~~~V~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~~~~~~i~~~~~- 307 (414)
T COG1004 229 KVGADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRKDKLAEKILNHLG- 307 (414)
T ss_pred HhCCCHHHHHHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 99999999999999999999999999999999999999999999999999651 11111 112333333
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+++++|+||||+|||||||+|+||++.|++.|++.|++|++|||.+.+..... . +.+.++.++++++++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~---------~--~~~~~~~~~~~~~~~ 376 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRN---------F--PDVELESDAEEALKG 376 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhc---------C--CCceEeCCHHHHHhh
Confidence 78899999999999999999999999999999999999999999987665432 1 146889999999999
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH 511 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~ 511 (598)
+|++|+.|.|++|+++||+.+ .|+.| +|||+||+|++
T Consensus 377 aDaivi~tew~ef~~~d~~~~--~m~~~-~v~DgRni~~~ 413 (414)
T COG1004 377 ADAIVINTEWDEFRDLDFEKL--LMKTP-VVIDGRNIFDP 413 (414)
T ss_pred CCEEEEeccHHHHhccChhhh--hccCC-EEEecccccCC
Confidence 999999999999999999998 67777 89999999986
No 3
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=100.00 E-value=2e-81 Score=685.34 Aligned_cols=440 Identities=63% Similarity=1.038 Sum_probs=373.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|||+|||+||||+++|..||+ +++|++|+++|+++++++.+|+|..|++|++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~-------------------------~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ 55 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIAL-------------------------KCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLD 55 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-------------------------cCCCCeEEEEECCHHHHHHHHcCCCccCCCCHH
Confidence 4789999999999999999999 234689999999999999999999999999999
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
+++.+....++++|+++.+++++||++|||||||.+.++++.++.+|+++++++++.|+++++++++||.+|||||||++
T Consensus 56 ell~~~~~~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~ 135 (473)
T PLN02353 56 EVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (473)
T ss_pred HHHHHhhcCCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH
Confidence 99877544569999999889999999999999998765433345778888888888888888878888888888887776
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
.+.. .+.+. ..|.+|+++++|||+
T Consensus 136 ~~~~-------------------------------------------------------~l~~~-~~g~~f~v~~~PErl 159 (473)
T PLN02353 136 AIEK-------------------------------------------------------ILTHN-SKGINFQILSNPEFL 159 (473)
T ss_pred HHHH-------------------------------------------------------HHHhh-CCCCCeEEEECCCcc
Confidence 6653 23321 136789999999999
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEA 324 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~ 324 (598)
++|.+++++.+|+||++||.+.++++++.+.++.+|+.+.+..++.++++.+||++|+++|+|++++|+|+||++.+|++
T Consensus 160 ~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~ 239 (473)
T PLN02353 160 AEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (473)
T ss_pred CCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998655556688999999999985467788999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHH---------------HHHHHHHHh
Q psy11160 325 TGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASY---------------WQQLYESLF 389 (598)
Q Consensus 325 ~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~---------------~~~~i~~~~ 389 (598)
+|+|+.||+++++.++|||++|++||+||||||||||+++|.+.|++.|.++.... ++.+.+.+.
T Consensus 240 ~giD~~eV~~~~~~d~rig~~~l~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~~~vv~~~~~~l~ 319 (473)
T PLN02353 240 TGADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMF 319 (473)
T ss_pred hCCCHHHHHHHhCCCCcCCCCCCCCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999997521111 111222233
Q ss_pred cccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhc---cccccc--------CC-C
Q psy11160 390 NTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKE---LDPELL--------DH-N 457 (598)
Q Consensus 390 ~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~---~~~~~~--------~~-~ 457 (598)
+.++++||+|||+||||||+|+|+||+++|++.|+++|++|.+|||.+..++..+.+.. .|+ +. .. +
T Consensus 320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 398 (473)
T PLN02353 320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWD-HPRHLQPMSPTAVK 398 (473)
T ss_pred cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhccccccc-cccccccccccccc
Confidence 35789999999999999999999999999999999999999999999877655332200 000 00 00 1
Q ss_pred ceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccc
Q psy11160 458 AVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVID 526 (598)
Q Consensus 458 ~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~ 526 (598)
.+.+++++++++++||++|++|+|++|++++|+.+.+.|++|++|+|+||++|++.+++.||.|.++|+
T Consensus 399 ~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~~~G~~y~~~G~ 467 (473)
T PLN02353 399 QVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLREIGFIVYSIGK 467 (473)
T ss_pred ceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHHhCCcEEEEeCC
Confidence 357788889999999999999999999999999999889888799999999999999999999999886
No 4
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-78 Score=625.86 Aligned_cols=401 Identities=30% Similarity=0.439 Sum_probs=347.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+||||||||+|+|..+|+ +|++|+|+|+|+.+++.+|+|..++.||+++
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~---------------------------~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~ 61 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFAS---------------------------AGFKVIGVDINQKKVDKLNRGESYIEEPDLD 61 (436)
T ss_pred ceEEEEEccccccHHHHHHHHH---------------------------cCCceEeEeCCHHHHHHHhCCcceeecCcHH
Confidence 4799999999999999999999 8999999999999999999999999999999
Q ss_pred HHHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
++++..+ .+++++|+|+. .++.||+++||||||.+.
T Consensus 62 ~~v~~~v~~g~lraTtd~~-~l~~~dv~iI~VPTPl~~------------------------------------------ 98 (436)
T COG0677 62 EVVKEAVESGKLRATTDPE-ELKECDVFIICVPTPLKK------------------------------------------ 98 (436)
T ss_pred HHHHHHHhcCCceEecChh-hcccCCEEEEEecCCcCC------------------------------------------
Confidence 9888765 46799999997 577999999999999742
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHH-HHhh--cccCCceeeEEEC
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMN-VLKA--NHKTNVQFQILSN 240 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~-~L~~--~~~~g~~~~l~~~ 240 (598)
.++||||||++|+++|+++|++|++||+|||+|||||++++. +++. +|+.+.||.++||
T Consensus 99 ------------------~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lays 160 (436)
T COG0677 99 ------------------YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYS 160 (436)
T ss_pred ------------------CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeC
Confidence 257899999999999999999999999999999999998875 4553 3667789999999
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
|||..||+..+.+.+.+|| +||..+ ++.+....+|+.+.. ..+.+.+..+|||+|+.+|+||++||+++||++.
T Consensus 161 PERv~PG~~~~el~~~~kV-IgG~tp----~~~e~a~~lY~~iv~-~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElal 234 (436)
T COG0677 161 PERVLPGNVLKELVNNPKV-IGGVTP----KCAELAAALYKTIVE-GVIPVTSARTAEMVKLTENTFRDVNIALANELAL 234 (436)
T ss_pred ccccCCCchhhhhhcCCce-eecCCH----HHHHHHHHHHHHheE-EEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999999999999999998 688775 577778899999985 4777899999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh----HHH--------HHHHHHH--
Q psy11160 321 VCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE----VAS--------YWQQLYE-- 386 (598)
Q Consensus 321 la~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~----~~~--------~~~~~i~-- 386 (598)
+|+++|+|++|++++++++|| ++.++||||+||||+|.|+++|.+.|+++|.+. +++ ++.+.+.
T Consensus 235 i~~~~GIdvwevIeaAnt~P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~~rlI~tAreIN~~mP~~Vv~~~~~a 312 (436)
T COG0677 235 ICNAMGIDVWEVIEAANTKPR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLIRTAREINDSMPRHVVDRVKEA 312 (436)
T ss_pred HHHHhCCcHHHHHHHhccCCc--eeecCCCCCCCCcccccCchheeecccccCCchHHHHHHHHHhccCCHHHHHHHHHH
Confidence 999999999999999999998 578899999999999999999999999999862 222 2212222
Q ss_pred --HHhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCC
Q psy11160 387 --SLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDD 464 (598)
Q Consensus 387 --~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (598)
+..+.+++.+|+|||||||+|+||+||||+++|++.|.++|.+|.+|||++..-.... .+. .+. ..+
T Consensus 313 l~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~~~--------~~~--~~~-~~~ 381 (436)
T COG0677 313 LNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPTRE--------DGE--GVT-LAI 381 (436)
T ss_pred HHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchhhh--------hcc--ccc-hhh
Confidence 3334578899999999999999999999999999999999999999999997532111 111 111 367
Q ss_pred hhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhh
Q psy11160 465 PYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALL 515 (598)
Q Consensus 465 ~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~ 515 (598)
.+++++++|++|++|+|++|+.+|++.+.+. .++|+|+||++++....
T Consensus 382 ~e~al~~~D~vVi~tDH~~fk~id~~~i~~~---~~vivDtrnV~~~~~~~ 429 (436)
T COG0677 382 LEEALKDADAVVIATDHSEFKEIDYEAIGKE---AKVIVDTRNVWKREREA 429 (436)
T ss_pred HHHHhccCCEEEEEeccHHhhcCCHHHhccC---CcEEEECccccchhhhh
Confidence 8899999999999999999999999988753 45999999999986654
No 5
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=100.00 E-value=8.2e-71 Score=597.11 Aligned_cols=396 Identities=22% Similarity=0.289 Sum_probs=331.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.|||+|||+||||++||..|++ ||+|++||+++++++.+++|..|++|++++
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~----------------------------~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~ 57 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK----------------------------SRQVVGFDVNKKRILELKNGVDVNLETTEE 57 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc----------------------------CCEEEEEeCCHHHHHHHHCcCCCCCCCCHH
Confidence 4899999999999999999887 599999999999999999999999999999
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++... +++.++++.+ ++++||++|+|||||.+.+ +.+|++++.++.+.|++.++++++||++||++|||++
T Consensus 58 ~l~~~---g~l~~t~~~~-~~~~advvii~Vptp~~~~-----~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~ 128 (425)
T PRK15182 58 ELREA---RYLKFTSEIE-KIKECNFYIITVPTPINTY-----KQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTE 128 (425)
T ss_pred HHHhh---CCeeEEeCHH-HHcCCCEEEEEcCCCCCCC-----CCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchH
Confidence 98654 4688888875 7899999999999998643 4789999999999999999999999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhh--cccCCceeeEEECCc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA--NHKTNVQFQILSNPE 242 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~--~~~~g~~~~l~~~Pe 242 (598)
+++. +++++ ++..+.+|.++++||
T Consensus 129 ~~~~------------------------------------------------------~~l~~~~g~~~~~~~~~~~~PE 154 (425)
T PRK15182 129 EECV------------------------------------------------------PILARMSGMTFNQDFYVGYSPE 154 (425)
T ss_pred HHHH------------------------------------------------------HHHHhccCCCcCCCeeEeeCCC
Confidence 7754 22332 222356799999999
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
|+.+|.+.+++.+|+|++.|+++ ++.+.++++|+.+.....++++++++||++|+++|+|++++|+|+||++.+|
T Consensus 155 ~v~~G~a~~~~~~~~riv~G~~~-----~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~la 229 (425)
T PRK15182 155 RINPGDKKHRLTNIKKITSGSTA-----QIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIF 229 (425)
T ss_pred cCCCCcccccccCCCeEEECCCH-----HHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999776543 5778899999999743467889999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh-H-------HH----HHHHHHHHHh-
Q psy11160 323 EATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE-V-------AS----YWQQLYESLF- 389 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~-~-------~~----~~~~~i~~~~- 389 (598)
+++|+|+.++++++++++++ ..+.||+ |||||||||+++|.+.|++.|.+. + ++ ++.+.+...+
T Consensus 230 e~~GiD~~~v~~a~~~~~~~--~~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~~~~v~~~~~~~l~ 306 (425)
T PRK15182 230 NRLNIDTEAVLRAAGSKWNF--LPFRPGL-VGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNMGNYVSEQLIKAMI 306 (425)
T ss_pred HHhCcCHHHHHHHhcCCCCc--ccCCCCc-cccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988642 2235555 999999999999999999998751 1 11 1111122222
Q ss_pred ---cccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChh
Q psy11160 390 ---NTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPY 466 (598)
Q Consensus 390 ---~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (598)
+++++++|+|||+||||||+|+||||+++|++.|+++|++|.+|||++..+...+.+ +. .. .+ +
T Consensus 307 ~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~--------~~---~~-~~-~ 373 (425)
T PRK15182 307 KKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREY--------GI---IP-VS-E 373 (425)
T ss_pred hcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhc--------Cc---cc-ch-h
Confidence 246889999999999999999999999999999999999999999998765443311 00 00 01 2
Q ss_pred hhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChh
Q psy11160 467 DTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHD 512 (598)
Q Consensus 467 ~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~ 512 (598)
.++++||+|||+|+|++|+++||+.+.+.|+.|++|||+||+++.+
T Consensus 374 ~~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~~~~ 419 (425)
T PRK15182 374 VKSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVLPAE 419 (425)
T ss_pred hhhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCCChh
Confidence 3578899999999999999999999998777666999999999853
No 6
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=100.00 E-value=6.5e-69 Score=582.87 Aligned_cols=396 Identities=40% Similarity=0.582 Sum_probs=345.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|+||++||..|++ .||+|++||+++++++.+++|..|++||++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~---------------------------~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~ 53 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLAD---------------------------LGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDE 53 (411)
T ss_pred CEEEEECCCchhHHHHHHHHh---------------------------cCCeEEEEECCHHHHHHhhcCCCCCCCCCHHH
Confidence 589999999999999999999 89999999999999999999999999999999
Q ss_pred HHhhhcC-CceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRD-VNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++.+... +++++++++.+++++||+||+|||||...+ +.+|++++.++++.|.+.++++++|+++||++|||++
T Consensus 54 ~~~~~~~~g~l~~~~~~~~~~~~advvii~vpt~~~~~-----~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~ 128 (411)
T TIGR03026 54 LLAKALAAGRLRATTDYEDAIRDADVIIICVPTPLKED-----GSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTE 128 (411)
T ss_pred HHHHhhhcCCeEEECCHHHHHhhCCEEEEEeCCCCCCC-----CCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchH
Confidence 9876543 458899999888999999999999997643 4789999999999999999999999999999999998
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhh--cccCCceeeEEECCc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA--NHKTNVQFQILSNPE 242 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~--~~~~g~~~~l~~~Pe 242 (598)
++.. ++++. ++..+.+|.++++||
T Consensus 129 ~l~~------------------------------------------------------~~~~~~~g~~~~~d~~v~~~Pe 154 (411)
T TIGR03026 129 EVVK------------------------------------------------------PILERASGLKLGEDFYLAYNPE 154 (411)
T ss_pred HHHH------------------------------------------------------HHHHhhcCCCCCCCceEEECCC
Confidence 8764 22332 111256789999999
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
|+.+|.+.+++.+|+++++|+++ ++.+.++++|+.++...+++++++++||++|+++|+|++++++|+||++.+|
T Consensus 155 ~~~~G~~~~~~~~~~~iv~G~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 155 FLREGNAVHDLLNPDRIVGGETE-----EAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred cCCCCChhhhhcCCCEEEEeCCH-----HHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998643 6889999999999732577889999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh-H-------HH----HHHHHHHHHhc
Q psy11160 323 EATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE-V-------AS----YWQQLYESLFN 390 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~-~-------~~----~~~~~i~~~~~ 390 (598)
+++|+|+++++++++.++|++..++.||+||||+|++||++++.+.|++.|++. + ++ ++.+.+...++
T Consensus 230 ~~~GiD~~~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~~~~~~~~~~~~l~ 309 (411)
T TIGR03026 230 EALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQPDYVVEKILDLLG 309 (411)
T ss_pred HHhCCCHHHHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999761 1 11 11122333334
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+++++|+|||+||||||+|+||||++.|++.|+++|++|.+|||.+..+.... + ..+.+++++++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~-~-------------~~~~~~~~~~~ 375 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKG-L-------------PLIDDLEEALK 375 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhh-c-------------ccCCCHHHHHh
Confidence 578999999999999999999999999999999999999999999987664321 1 12478899999
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
++|+||++|+|++|+++||+.+.+.|+.| +|||+||
T Consensus 376 ~ad~~v~~t~~~~~~~~~~~~~~~~~~~~-~v~D~~~ 411 (411)
T TIGR03026 376 GADALVILTDHDEFKDLDLEKIKDLMKGK-VVVDTRN 411 (411)
T ss_pred CCCEEEEecCCHHHhccCHHHHHHhcCCC-EEEeCCC
Confidence 99999999999999999999999888766 9999997
No 7
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-68 Score=572.55 Aligned_cols=367 Identities=23% Similarity=0.358 Sum_probs=306.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+||||++||..|+. ||+|++||+|+++++.+++|..|++||++++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~----------------------------G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~ 52 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ----------------------------NHEVVALDILPSRVAMLNDRISPIVDKEIQQ 52 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh----------------------------CCcEEEEECCHHHHHHHHcCCCCCCCcCHHH
Confidence 589999999999999977765 7999999999999999999999999999999
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
++.+. ..++++++++.+++++||+||+|||||.+. +...+|++++++++++|.+ ++++++||++||+||||+++
T Consensus 53 ~l~~~-~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~----k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~ 126 (388)
T PRK15057 53 FLQSD-KIHFNATLDKNEAYRDADYVIIATPTDYDP----KTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAA 126 (388)
T ss_pred HHHhC-CCcEEEecchhhhhcCCCEEEEeCCCCCcc----CCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHH
Confidence 88653 345777777888899999999999999642 2346788888888888887 68888888888888888877
Q ss_pred HHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccC
Q psy11160 166 IMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245 (598)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~ 245 (598)
+.. .+.+ ++++++|||++
T Consensus 127 l~~-------------------------------------------------------~~~~-------~~v~~~PE~l~ 144 (388)
T PRK15057 127 MHK-------------------------------------------------------KYRT-------ENIIFSPEFLR 144 (388)
T ss_pred HHH-------------------------------------------------------Hhhc-------CcEEECccccc
Confidence 654 1221 35789999999
Q ss_pred cCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHH-hcccCCc-eEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 246 EGTAMTDLFNADRILIGGEETPEGYAAIESLSWVY-EHWIPRK-HILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 246 ~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly-~~~~~~~-~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
+|.+++++.+|+|||+|+.+ +..+++.++| ..+.... +++++++++||++|+++|+|++++|+|+||++.+|+
T Consensus 145 ~G~a~~d~~~p~rvv~G~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae 219 (388)
T PRK15057 145 EGKALYDNLHPSRIVIGERS-----ERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAE 219 (388)
T ss_pred CCcccccccCCCEEEEEcCc-----HHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 2445555565 4443322 335899999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhH------HHHHH-HHHHHHhcccCCCe
Q psy11160 324 ATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEV------ASYWQ-QLYESLFNTVSDKH 396 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~------~~~~~-~~i~~~~~~~~~~~ 396 (598)
++|+|++++++++++++|+|..|+.||+||||||||||+.+|.+.+...+.+.+ ++... .+++.+. ..++++
T Consensus 220 ~~GiD~~eV~~a~~~d~ri~~~~l~pG~G~GG~ClpkD~~~L~~~~~~~~~~l~~~~~~~N~~~~~~~~~~~~-~~~~~~ 298 (388)
T PRK15057 220 SLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAIVDANRTRKDFIADAIL-SRKPQV 298 (388)
T ss_pred HhCcCHHHHHHHhcCCCCCCCccCCCCCCCCCcChhhhHHHHHHhccCCCcHHHHHHHHHHHHhHHHHHHHHH-HhcCCE
Confidence 999999999999999999999999999999999999999999888765554321 11111 1233333 236899
Q ss_pred EEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEE
Q psy11160 397 IAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIV 476 (598)
Q Consensus 397 V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adali 476 (598)
|+|||+||||||+|+||||+++|++.|+++|++|.+|||.+..... + ++.+++|++++++++|++|
T Consensus 299 i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~ 364 (388)
T PRK15057 299 VGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSF---F-----------NSRLERDLATFKQQADVII 364 (388)
T ss_pred EEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhh---c-----------CCeeeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999765431 1 3578999999999999999
Q ss_pred EEeeccchhhcc
Q psy11160 477 VCTEWDEFVTLD 488 (598)
Q Consensus 477 i~t~~~~f~~ld 488 (598)
+.|.|+||+++.
T Consensus 365 ~~~~~~~~~~~~ 376 (388)
T PRK15057 365 SNRMAEELKDVA 376 (388)
T ss_pred EcCCcHHHHhhh
Confidence 999999998865
No 8
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-66 Score=560.77 Aligned_cols=391 Identities=28% Similarity=0.393 Sum_probs=320.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++||+|||+||||++||..|++ .||+|++||+|+++++.+++|..|++||+++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~---------------------------~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~ 55 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFAS---------------------------RQKQVIGVDINQHAVDTINRGEIHIVEPDLD 55 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHh---------------------------CCCEEEEEeCCHHHHHHHHCCCCCcCCCCHH
Confidence 5799999999999999999999 8999999999999999999999999999999
Q ss_pred HHHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+++.+.. .+.++++++. ++||+||+|||||.+.+ +.+|+++++++++.|+++++++++||++||++||++
T Consensus 56 ~~l~~~~~~g~l~~~~~~----~~aDvvii~vptp~~~~-----~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt 126 (415)
T PRK11064 56 MVVKTAVEGGYLRATTTP----EPADAFLIAVPTPFKGD-----HEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGAT 126 (415)
T ss_pred HHHHHHhhcCceeeeccc----ccCCEEEEEcCCCCCCC-----CCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHH
Confidence 9987543 3567777654 48999999999998654 478999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcc--cCCceeeEEECC
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANH--KTNVQFQILSNP 241 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~--~~g~~~~l~~~P 241 (598)
+++...+... . .-++.+. ..+.+|.++++|
T Consensus 127 ~~~~~~l~~~---------------------------~---------------------~~~~~~~~~g~~~~f~v~~~P 158 (415)
T PRK11064 127 EQMAEWLAEA---------------------------R---------------------PDLTFPQQAGEQADINIAYCP 158 (415)
T ss_pred HHHHHHHHHh---------------------------c---------------------cCCcccccccCCCCeEEEECC
Confidence 9887632100 0 0000000 013578999999
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
||+.+|.+.+++.+|+++ +||.++ +++++++++|+.+++ ..++++++++||++|+++|+|++++|+|+||++.+
T Consensus 159 E~~~~G~~~~~~~~~~~v-vgG~~~----~~~~~~~~ly~~~~~-~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 232 (415)
T PRK11064 159 ERVLPGQVMVELIKNDRV-IGGMTP----VCSARASELYKIFLE-GECVVTNSRTAEMCKLTENSFRDVNIAFANELSLI 232 (415)
T ss_pred CccCCCChhhhhcCCCEE-EEeCCH----HHHHHHHHHHHHhcC-CCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 588543 678999999999985 56678999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChh------HHH----HHHHHHHHH---
Q psy11160 322 CEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPE------VAS----YWQQLYESL--- 388 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~------~~~----~~~~~i~~~--- 388 (598)
|+++|+|++++++++++++|+ .+++||+||||||||||+.+|.+.+... .+. +++ ++.+.+...
T Consensus 233 ae~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~ClpkD~~~L~~~~~~~-~~l~~~a~~~N~~~~~~v~~~~~~~l~~ 309 (415)
T PRK11064 233 CADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVAQNPQQ-ARLIRTAREVNDGKPHWVIDQVKAAVAD 309 (415)
T ss_pred HHHhCCCHHHHHHHhccCCCc--ccCCCCCCCCCccccccHHHHHHhcCCc-cHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 999999999999999999997 5789999999999999999997644321 111 111 111122222
Q ss_pred -----hcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcC-CeEEEeCCCCChhhhhhhhhcccccccCCCceEec
Q psy11160 389 -----FNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEG-AKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSIL 462 (598)
Q Consensus 389 -----~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G-~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (598)
.+.+++++|+|||+||||||+|+||||+++|++.|+++| ++|.+|||.+...... ... .+. .
T Consensus 310 ~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~----------~~~-~~~-~ 377 (415)
T PRK11064 310 CLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKK----------LDG-LVT-L 377 (415)
T ss_pred hhhhhccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhh----------ccC-cee-e
Confidence 234678999999999999999999999999999999996 9999999997643210 111 122 3
Q ss_pred CChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEec
Q psy11160 463 DDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDG 505 (598)
Q Consensus 463 ~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~ 505 (598)
.+++++++++|++|++|+|++|+++||+++. .| +|||+
T Consensus 378 ~~~~~~~~~ad~vvi~t~~~~~~~~~~~~~~----~~-~v~D~ 415 (415)
T PRK11064 378 VSLDEALATADVLVMLVDHSQFKAINGDNVH----QQ-WVVDT 415 (415)
T ss_pred CCHHHHHhCCCEEEECCCCHHhccCCHHHhC----CC-EEEeC
Confidence 7889999999999999999999999998753 34 88885
No 9
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=100.00 E-value=2e-35 Score=286.68 Aligned_cols=174 Identities=38% Similarity=0.584 Sum_probs=138.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+||+|+++|..||+ .||+|+++|+|+++++.+|+|..|++||++++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~---------------------------~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ 53 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE---------------------------KGHQVIGVDIDEEKVEALNNGELPIYEPGLDE 53 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH---------------------------TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHH
T ss_pred CEEEEECCCcchHHHHHHHHh---------------------------CCCEEEEEeCChHHHHHHhhccccccccchhh
Confidence 799999999999999999999 89999999999999999999999999999999
Q ss_pred HHhhhc-CCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
++++.. .+++++++|..+++++||++|||||||.+.+ +.+|+++++++++.|++.++++++||++||+||||++
T Consensus 54 ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~~-----~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 54 LLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDED-----GSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp HHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBETT-----TSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred hhccccccccchhhhhhhhhhhccceEEEecCCCcccc-----CCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 999876 6899999999999999999999999998764 4788888888888888888888888888888888887
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~ 244 (598)
++.. ++|++....+.+|+++++|||+
T Consensus 129 ~~~~------------------------------------------------------~ile~~~~~~~~f~la~~PErl 154 (185)
T PF03721_consen 129 ELLK------------------------------------------------------PILEKRSGKKEDFHLAYSPERL 154 (185)
T ss_dssp HHHH------------------------------------------------------HHHHHHCCTTTCEEEEE-----
T ss_pred Hhhh------------------------------------------------------hhhhhhcccccCCeEEECCCcc
Confidence 6654 4566532223689999999999
Q ss_pred CcCchhhhcCCCCEEEEccCC
Q psy11160 245 SEGTAMTDLFNADRILIGGEE 265 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~ 265 (598)
.+|++++++.+|+||+.|..+
T Consensus 155 ~~G~a~~d~~~~~rvV~G~~~ 175 (185)
T PF03721_consen 155 REGRAIEDFRNPPRVVGGCDD 175 (185)
T ss_dssp -TTSHHHHHHSSSEEEEEESS
T ss_pred CCCCcchhccCCCEEEEeCCc
Confidence 999999999999999877655
No 10
>KOG2666|consensus
Probab=99.97 E-value=6.7e-32 Score=269.87 Aligned_cols=270 Identities=39% Similarity=0.537 Sum_probs=192.9
Q ss_pred HHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCc
Q psy11160 169 VLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGT 248 (598)
Q Consensus 169 ~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~ 248 (598)
+.++|+|+.+.++++.+||.|+|+|+|.|+......++|+++||||+.+.+. ++..+.. -.+|-
T Consensus 85 svntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaes----i~~il~~------------n~~~i 148 (481)
T KOG2666|consen 85 SVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAES----IEKILNH------------NSKGI 148 (481)
T ss_pred EecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHH----HHHHHhc------------CCCCc
Confidence 4578999999999999999999999999999999999999999999988763 4553311 24677
Q ss_pred hhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 249 AMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSE-------LSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 249 a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae-------~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
.+..+.+||++-.|. |+ +.||. .+++.+|+-.++| +..+++++....+|..+|-++.
T Consensus 149 ~fqilsnpeflaegt--------ai---kdl~n----pdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwss- 212 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGT--------AI---KDLFN----PDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSS- 212 (481)
T ss_pred eeEeccChHHhcccc--------hh---hhhcC----CceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHH-
Confidence 888899999775442 44 45553 4778777665554 4445566666667777777764
Q ss_pred HHHcCCCHHHHHHHHcC---CccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHh------ccc
Q psy11160 322 CEATGADVSEVAKAVGL---DSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLF------NTV 392 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~---~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~------~~~ 392 (598)
|+.+++.| .+||++ +|.++.+|+..|.+. .++-.... ..+
T Consensus 213 ---------elsklaanaflaqriss-----------------ins~salceatgadv-----~eva~avg~d~rig~kf 261 (481)
T KOG2666|consen 213 ---------ELSKLAANAFLAQRISS-----------------INSMSALCEATGADV-----SEVAYAVGTDSRIGSKF 261 (481)
T ss_pred ---------HHHHHHHHHHHHHHHhh-----------------hHHHHHHHHhcCCCH-----HHHHHHhcccccccHHH
Confidence 66666654 335543 899999999999872 23322211 001
Q ss_pred CCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 393 SDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 393 ~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
-+..||+-|- |+-.|...++.-+
T Consensus 262 l~asvgfggs---------------------------------------------------------cfqkdilnlvyic 284 (481)
T KOG2666|consen 262 LNASVGFGGS---------------------------------------------------------CFQKDILNLVYIC 284 (481)
T ss_pred hhcccCcCch---------------------------------------------------------hHHHHHHHHHHHH
Confidence 1222333332 3222221111100
Q ss_pred CEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEE
Q psy11160 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHI 552 (598)
Q Consensus 473 dalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i 552 (598)
+ .+++++.++ ...++..+|++|++|+++||++.|++++.++||
T Consensus 285 e------------~lnlpeva~-------------------------ywqqvi~~ndyqkrrfa~rii~smFNTVsdKKI 327 (481)
T KOG2666|consen 285 E------------CLNLPEVAE-------------------------YWQQVIKINDYQKRRFANRIISSMFNTVSDKKI 327 (481)
T ss_pred h------------cCCChHHHH-------------------------HHHHHhhhhHHHHHHHHHHHHHHHhhccccceE
Confidence 0 012222111 014577899999999999999999999999999
Q ss_pred EEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCCCCCc
Q psy11160 553 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMSR 595 (598)
Q Consensus 553 ~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~~~~ 595 (598)
+|||+|||.||.|+||||++.+++.|++.++.+.+|||.+.++
T Consensus 328 AIlGFAFKKdTgdtREt~AI~Vck~Lled~A~LsIYDPqV~~e 370 (481)
T KOG2666|consen 328 AILGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEE 370 (481)
T ss_pred EEEEeEeecCCCCcccCcHHHHHHHHhhccceeeecCCCCCHH
Confidence 9999999999999999999999999999999999999999755
No 11
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.97 E-value=9.7e-30 Score=259.71 Aligned_cols=241 Identities=22% Similarity=0.245 Sum_probs=208.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~~~~e~~~~ 84 (598)
+||+|||+|.||.|||.+|.+ +||+|++||+++++ .+.+..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~---------------------------aG~~v~v~~r~~~ka~~~~~~----------- 42 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLK---------------------------AGHEVTVYNRTPEKAAELLAA----------- 42 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHH---------------------------CCCEEEEEeCChhhhhHHHHH-----------
Confidence 589999999999999999999 89999999999999 554443
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.+.+...++.+++++||+||+|||.+. .+++++ ..+.+.+++++++|++||+.|.
T Consensus 43 --------~Ga~~a~s~~eaa~~aDvVitmv~~~~--------------~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~ 100 (286)
T COG2084 43 --------AGATVAASPAEAAAEADVVITMLPDDA--------------AVRAVLFGENGLLEGLKPGAIVIDMSTISPE 100 (286)
T ss_pred --------cCCcccCCHHHHHHhCCEEEEecCCHH--------------HHHHHHhCccchhhcCCCCCEEEECCCCCHH
Confidence 124566788889999999999997653 466666 6799999999999999999999
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
++++++. .+++ .| ..++++|
T Consensus 101 ~a~~~a~-------------------------------------------------------~~~~---~G--~~~lDAP 120 (286)
T COG2084 101 TARELAA-------------------------------------------------------ALAA---KG--LEFLDAP 120 (286)
T ss_pred HHHHHHH-------------------------------------------------------HHHh---cC--CcEEecC
Confidence 9988876 2333 23 5689999
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
+.+.+..+..+.+ .||+||+. +++++++|+++.++. .++++|+.++++.+|+++|++.+.++..+.|...+
T Consensus 121 VsGg~~~A~~GtL---timvGG~~-----~~f~r~~pvl~~~g~-~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~l 191 (286)
T COG2084 121 VSGGVPGAAAGTL---TIMVGGDA-----EAFERAKPVLEAMGK-NIVHVGPVGAGQAAKLANNILLAGNIAALAEALAL 191 (286)
T ss_pred ccCCchhhhhCce---EEEeCCCH-----HHHHHHHHHHHHhcC-ceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888 59999986 689999999999984 68889999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHcCCcccccc-------cc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 322 CEATGADVSEVAKAVGLDSRIGAK-------FL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~~~ri~~~-------~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+++.|+|++.+.+++.+..-.+|. ++ ++.|||....+.||+++..+.+++.|++
T Consensus 192 a~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~ 254 (286)
T COG2084 192 AEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAP 254 (286)
T ss_pred HHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999986533332 12 4788999999999999999999999986
No 12
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.97 E-value=1.1e-31 Score=294.01 Aligned_cols=280 Identities=34% Similarity=0.449 Sum_probs=197.8
Q ss_pred hhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchh
Q psy11160 171 KANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAM 250 (598)
Q Consensus 171 ~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~ 250 (598)
.||.+.++.+.++.+||+|+++|++.|+++++++.+||+|||||||||+ . +...+.. . ..|..+
T Consensus 87 ~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~---~-~~~~l~~-----------~-~~g~~f 150 (473)
T PLN02353 87 NTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE---A-IEKILTH-----------N-SKGINF 150 (473)
T ss_pred CCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH---H-HHHHHHh-----------h-CCCCCe
Confidence 3344334334456899999999999999999999999999999999997 3 4443321 0 236678
Q ss_pred hhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCc--hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy11160 251 TDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNT--WS-SELSKLAANAFLAQRISSINSLSAVCEATGA 327 (598)
Q Consensus 251 ~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~--~~-Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gi 327 (598)
+..++|||+..|.. ++ +++ ..+++++|+. .+ .+..+.+..+|.... .+ .....+++
T Consensus 151 ~v~~~PErl~~G~a--------~~---d~~----~p~riViG~~~~~~~~~a~~~~~~lY~~~~----~~--~~i~~~s~ 209 (473)
T PLN02353 151 QILSNPEFLAEGTA--------IE---DLF----KPDRVLIGGRETPEGQKAVQALKDVYAHWV----PE--ERIITTNL 209 (473)
T ss_pred EEEECCCccCCCCc--------cc---ccC----CCCEEEEccCCchhhHHHHHHHHHHHHHhh----cC--CCEEecCH
Confidence 89999999998852 22 222 1245555543 22 233444444444321 00 11234678
Q ss_pred CHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCC
Q psy11160 328 DVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKN 407 (598)
Q Consensus 328 d~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~ 407 (598)
..+||+|+++|.+| ..+++| +|+++.+|+++|++ +.++++.+. .++|| |.
T Consensus 210 ~~AE~~K~~eN~~r------a~~Iaf--------~NEla~lce~~giD-----~~eV~~~~~---~d~ri---g~----- 259 (473)
T PLN02353 210 WSAELSKLAANAFL------AQRISS--------VNAMSALCEATGAD-----VSQVSHAVG---KDSRI---GP----- 259 (473)
T ss_pred HHHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHhCCC-----HHHHHHHhC---CCCcC---CC-----
Confidence 88999999999876 567789 99999999999998 357776653 12222 11
Q ss_pred CCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhc
Q psy11160 408 TGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTL 487 (598)
Q Consensus 408 t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~l 487 (598)
..+.|+. ++||| |++.|++.+...+. ++
T Consensus 260 -----------------------~~l~PG~--------------G~GG~---ClpkD~~~L~~~a~------------~~ 287 (473)
T PLN02353 260 -----------------------KFLNASV--------------GFGGS---CFQKDILNLVYICE------------CN 287 (473)
T ss_pred -----------------------CCCCCCC--------------CCCCc---chhhhHHHHHHHHH------------Hc
Confidence 1223543 37888 99999987754331 00
Q ss_pred cHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcC
Q psy11160 488 DYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTR 567 (598)
Q Consensus 488 d~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R 567 (598)
..++- +. ..+.+.++|+.||+++++++.+.+.+++++++|+|||+||||||||+|
T Consensus 288 g~~~~------~~-------------------l~~~~~~iN~~~~~~vv~~~~~~l~~~~~~~~VavlGlafK~~tdD~R 342 (473)
T PLN02353 288 GLPEV------AE-------------------YWKQVIKMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTR 342 (473)
T ss_pred CCchH------HH-------------------HHHHHHHHHHhhHHHHHHHHHHHhhcccCCCEEEEEeeeecCCCCccc
Confidence 00000 00 024577899999999999999998777899999999999999999999
Q ss_pred CCchHHHHHHHHhCCCEEEEECCCCCC
Q psy11160 568 ESPAIHVCRTLLYEGAKLKIYDPKLMS 594 (598)
Q Consensus 568 ~sp~~~i~~~l~~~g~~v~~~DP~~~~ 594 (598)
+||++.|++.|.++|++|.+|||++..
T Consensus 343 ~Spa~~li~~L~~~G~~V~~~DP~v~~ 369 (473)
T PLN02353 343 ETPAIDVCKGLLGDKAKLSIYDPQVTE 369 (473)
T ss_pred cChHHHHHHHHHhCCCEEEEECCCCCh
Confidence 999999999999999999999999754
No 13
>PLN02858 fructose-bisphosphate aldolase
Probab=99.96 E-value=1.1e-27 Score=290.07 Aligned_cols=360 Identities=11% Similarity=0.072 Sum_probs=273.4
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+++..+|+|||+|.||.+||.+|.+ +||+|++||+++++.+.+.+.
T Consensus 1 ~~~~~~IGfIGLG~MG~~mA~~L~~---------------------------~G~~v~v~dr~~~~~~~l~~~------- 46 (1378)
T PLN02858 1 AQSAGVVGFVGLDSLSFELASSLLR---------------------------SGFKVQAFEISTPLMEKFCEL------- 46 (1378)
T ss_pred CCCCCeEEEEchhHHHHHHHHHHHH---------------------------CCCeEEEEcCCHHHHHHHHHc-------
Confidence 3556799999999999999999999 899999999999999988742
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv 158 (598)
+...+.++.+++++||+||+|+|++. .+++++ +.+.+.+++++++|++||+
T Consensus 47 ------------Ga~~~~s~~e~a~~advVi~~l~~~~--------------~v~~V~~g~~g~~~~l~~g~iivd~STi 100 (1378)
T PLN02858 47 ------------GGHRCDSPAEAAKDAAALVVVLSHPD--------------QVDDVFFGDEGAAKGLQKGAVILIRSTI 100 (1378)
T ss_pred ------------CCeecCCHHHHHhcCCEEEEEcCChH--------------HHHHHHhchhhHHhcCCCcCEEEECCCC
Confidence 23456789999999999999998763 456664 6788888999999999999
Q ss_pred chHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEE
Q psy11160 159 PVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQIL 238 (598)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~ 238 (598)
.|.++++++. .+.+ .|.++.++
T Consensus 101 ~p~~~~~la~-------------------------------------------------------~l~~---~g~~~~~l 122 (1378)
T PLN02858 101 LPLQLQKLEK-------------------------------------------------------KLTE---RKEQIFLV 122 (1378)
T ss_pred CHHHHHHHHH-------------------------------------------------------HHHh---cCCceEEE
Confidence 9999988875 2332 24335689
Q ss_pred ECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEe-cCchhHHHHHHHHHHHHHHHHHHHHH
Q psy11160 239 SNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILT-TNTWSSELSKLAANAFLAQRISSINS 317 (598)
Q Consensus 239 ~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~-~~~~~Ae~~Kl~~N~~~~~~ia~~nE 317 (598)
++|.++.+..+..+.+ .+|+||+. +++++++++++.|+. ..+++ |+.++|..+|+++|++.+..++.+.|
T Consensus 123 DaPVsGg~~~A~~G~L---~imvGG~~-----~~~~~~~p~l~~~g~-~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aE 193 (1378)
T PLN02858 123 DAYVSKGMSDLLNGKL---MIIASGRS-----DAITRAQPFLSAMCQ-KLYTFEGEIGAGSKVKMVNELLEGIHLVASAE 193 (1378)
T ss_pred EccCcCCHHHHhcCCe---EEEEcCCH-----HHHHHHHHHHHHhcC-ceEEecCCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999987766666666 48999976 589999999999984 45554 88999999999999999999999999
Q ss_pred HHHHHHHcCCCHHHHHHHHcCCcccccc-------cc--ccCccccccchhhhHHHHHHHHHHcCChh-HH----HHHH-
Q psy11160 318 LSAVCEATGADVSEVAKAVGLDSRIGAK-------FL--QASVGFGGSCFQKDILNLVYICECLNLPE-VA----SYWQ- 382 (598)
Q Consensus 318 ~~~la~~~gid~~ev~~~l~~~~ri~~~-------~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~~-~~----~~~~- 382 (598)
...++++.|+|++.++++++..+..++. ++ ++.++|....+.||+++..+.|++.|++. +. +.++
T Consensus 194 Al~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~lpl~~~a~~~~~~ 273 (1378)
T PLN02858 194 AMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFPLPLLAVAHQQLIS 273 (1378)
T ss_pred HHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 9999999999999999999976532221 12 46678999999999999999999999862 11 1111
Q ss_pred ---------------HHHHHHh---------ccc---------------CCCeEEEEeccccCCCCcccCChHHHHHHHH
Q psy11160 383 ---------------QLYESLF---------NTV---------------SDKHIAILGFAFKKNTGDTRESPAIHVCRTL 423 (598)
Q Consensus 383 ---------------~~i~~~~---------~~~---------------~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L 423 (598)
++++... .++ ..++|+++|+. .....+++.|
T Consensus 274 a~~~G~g~~D~sav~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IGfIGlG----------~MG~~mA~~L 343 (1378)
T PLN02858 274 GSSSMQGDDTATSLAKVWEKVFGVNILEAANRELYKPEDLAKQITMQAKPVKRIGFIGLG----------AMGFGMASHL 343 (1378)
T ss_pred HHhcCCCccChHHHHHHHHHHcCCCccccccccccChHHHHHHhhccccCCCeEEEECch----------HHHHHHHHHH
Confidence 1111110 000 13789999983 5778899999
Q ss_pred HHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccch-hhc--cHHHHHhccCCCc
Q psy11160 424 LYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEF-VTL--DYKRIYEGMMKPA 500 (598)
Q Consensus 424 ~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f-~~l--d~~~l~~~m~~~~ 500 (598)
.+.|++|.+||+.....+. +.. .| .....++.++++++|+|+++...++- ++. ....+...+.+..
T Consensus 344 ~~~G~~V~v~dr~~~~~~~---l~~----~G----a~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ 412 (1378)
T PLN02858 344 LKSNFSVCGYDVYKPTLVR---FEN----AG----GLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGA 412 (1378)
T ss_pred HHCCCEEEEEeCCHHHHHH---HHH----cC----CeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCC
Confidence 9999999999985432211 110 11 23467899999999999999986642 221 1123344455556
Q ss_pred EEEecCCCC
Q psy11160 501 YIFDGRKIL 509 (598)
Q Consensus 501 iI~D~r~i~ 509 (598)
+++|...+-
T Consensus 413 ivVd~STvs 421 (1378)
T PLN02858 413 SIVLSSTVS 421 (1378)
T ss_pred EEEECCCCC
Confidence 889987765
No 14
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=3.3e-30 Score=268.36 Aligned_cols=270 Identities=29% Similarity=0.419 Sum_probs=189.0
Q ss_pred cCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEE
Q psy11160 181 QGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRIL 260 (598)
Q Consensus 181 ~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~ 260 (598)
..+..||+|++++++.|+++++...+||.+|||||||+++ +....... .++..+...+|||++=
T Consensus 90 ~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~----v~~~i~~~------------~~~~~f~v~~NPEFLR 153 (414)
T COG1004 90 EDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEE----VRAKIREE------------NSGKDFEVASNPEFLR 153 (414)
T ss_pred CCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHH----HHHHHHhh------------cccCCceEecChHHhc
Confidence 3678899999999999999999999999999999999984 45433211 2344777889999765
Q ss_pred EccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 261 IGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 261 vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ 340 (598)
.|. | +|..+.| +++++|.... +..+.+..+|..... +... --.+++..+||+|.+.|.
T Consensus 154 EG~--------A------v~D~~~P-dRIViG~~~~-~a~~~~~ely~~~~~---~~~p--~l~t~~~~AE~IKyaaNa- 211 (414)
T COG1004 154 EGS--------A------VYDFLYP-DRIVIGVRSE-RAAAVLRELYAPFLR---QDVP--ILFTDLREAELIKYAANA- 211 (414)
T ss_pred Ccc--------h------hhhccCC-CeEEEccCCh-hHHHHHHHHHhhhhh---cCCC--EEEecchHHHHHHHHHHH-
Confidence 442 2 3444444 6777664321 123333333322100 0000 012588899999999875
Q ss_pred cccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHH
Q psy11160 341 RIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVC 420 (598)
Q Consensus 341 ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li 420 (598)
||...++| +|++..+|+..|++. .++++.+. .++||+
T Consensus 212 -----fLAtKIsF--------iNEia~ice~~g~D~-----~~V~~gIG---lD~RIG---------------------- 248 (414)
T COG1004 212 -----FLATKISF--------INEIANICEKVGADV-----KQVAEGIG---LDPRIG---------------------- 248 (414)
T ss_pred -----HHHHHHHH--------HHHHHHHHHHhCCCH-----HHHHHHcC---CCchhh----------------------
Confidence 44555788 999999999999983 45555432 223322
Q ss_pred HHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCc
Q psy11160 421 RTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPA 500 (598)
Q Consensus 421 ~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~ 500 (598)
. +...|+ .++||. |++.|...++..|. ++.+ .+.
T Consensus 249 ~---------~fl~aG--------------~GyGGs---CfPKD~~AL~~~a~------------~~~~--------~~~ 282 (414)
T COG1004 249 N---------HFLNAG--------------FGYGGS---CFPKDTKALIANAE------------ELGY--------DPN 282 (414)
T ss_pred H---------hhCCCC--------------CCCCCc---CCcHhHHHHHHHHH------------hcCC--------chH
Confidence 0 111222 236666 99988876665431 1110 011
Q ss_pred EEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHh
Q psy11160 501 YIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580 (598)
Q Consensus 501 iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~ 580 (598)
+ .+++.++|+.||.+++++|.+.++ ++|++|+||||+|||||||+|+||++.|++.|++
T Consensus 283 l-------------------l~avv~vN~~qk~~~~~~i~~~~~--l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~ 341 (414)
T COG1004 283 L-------------------LEAVVEVNERRKDKLAEKILNHLG--LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQE 341 (414)
T ss_pred H-------------------HHHHHHHHHHHHHHHHHHHHHhcC--CCCcEEEEEEEeecCCCccchhchHHHHHHHHHH
Confidence 1 156778899999999999999996 9999999999999999999999999999999999
Q ss_pred CCCEEEEECCCCCCccCC
Q psy11160 581 EGAKLKIYDPKLMSRIDH 598 (598)
Q Consensus 581 ~g~~v~~~DP~~~~~~~~ 598 (598)
.|++|++|||.++++.++
T Consensus 342 ~Ga~V~aYDP~a~~~~~~ 359 (414)
T COG1004 342 KGAEVIAYDPVAMENAFR 359 (414)
T ss_pred CCCEEEEECchhhHHHHh
Confidence 999999999999987653
No 15
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.96 E-value=2.6e-29 Score=273.02 Aligned_cols=266 Identities=21% Similarity=0.253 Sum_probs=189.3
Q ss_pred cCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEE
Q psy11160 181 QGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRIL 260 (598)
Q Consensus 181 ~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~ 260 (598)
..+.+|++|+.++.+.|++++++|.+||++||||||||+ +++.+.++... ....+.++...++|+|+.
T Consensus 90 ~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~---~~~~~~l~~~~---------g~~~~~~~~~~~~PE~v~ 157 (425)
T PRK15182 90 TYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTE---EECVPILARMS---------GMTFNQDFYVGYSPERIN 157 (425)
T ss_pred CCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchH---HHHHHHHHhcc---------CCCcCCCeeEeeCCCcCC
Confidence 456799999999999999999999999999999999998 46666443210 122356778899999987
Q ss_pred EccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 261 IGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 261 vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ 340 (598)
.|.. ...+. ...++..|.. .+..+.+..+|....-. + .....++..+|++|+++|..
T Consensus 158 ~G~a--------~~~~~-------~~~riv~G~~--~~~~~~~~~ly~~~~~~--~----~~~~~~~~~AE~~Kl~~N~~ 214 (425)
T PRK15182 158 PGDK--------KHRLT-------NIKKITSGST--AQIAELIDEVYQQIISA--G----TYKAESIKVAEAAKVIENTQ 214 (425)
T ss_pred CCcc--------ccccc-------CCCeEEECCC--HHHHHHHHHHHHHHhhc--C----cEEecCHHHHHHHHHHHHHH
Confidence 6532 21111 1234544432 34555555445432100 0 11234567899999999876
Q ss_pred cccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHH
Q psy11160 341 RIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVC 420 (598)
Q Consensus 341 ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li 420 (598)
+ ...++| +|+++.+|+++|++. .++++.+..+ +
T Consensus 215 ~------av~Ia~--------~NE~a~lae~~GiD~-----~~v~~a~~~~--------------~-------------- 247 (425)
T PRK15182 215 R------DLNIAL--------VNELAIIFNRLNIDT-----EAVLRAAGSK--------------W-------------- 247 (425)
T ss_pred H------HHHHHH--------HHHHHHHHHHhCcCH-----HHHHHHhcCC--------------C--------------
Confidence 5 456788 999999999999983 4555543210 0
Q ss_pred HHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCc
Q psy11160 421 RTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPA 500 (598)
Q Consensus 421 ~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~ 500 (598)
.+..+.| ++ +||| |++.|++.+++.+. +....+.
T Consensus 248 --------~~~~~~p--------------G~-vGG~---ClpkD~~~L~~~a~--------------------~~g~~~~ 281 (425)
T PRK15182 248 --------NFLPFRP--------------GL-VGGH---CIGVDPYYLTHKSQ--------------------GIGYYPE 281 (425)
T ss_pred --------CcccCCC--------------Cc-cccc---cccccHHHHHHHHH--------------------hcCCCcH
Confidence 0011223 23 7888 99999988765441 0000111
Q ss_pred EEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHh---cCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHH
Q psy11160 501 YIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSL---FNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRT 577 (598)
Q Consensus 501 iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~---~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~ 577 (598)
+ .++++++|+.||+++++++.+.+ ++++++++|+||||||||||||+||||++.|++.
T Consensus 282 l-------------------~~~a~~iN~~~~~~v~~~~~~~l~~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~ 342 (425)
T PRK15182 282 I-------------------ILAGRRLNDNMGNYVSEQLIKAMIKKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKE 342 (425)
T ss_pred H-------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHH
Confidence 1 25678999999999999999988 4568899999999999999999999999999999
Q ss_pred HHhCCCEEEEECCCCC
Q psy11160 578 LLYEGAKLKIYDPKLM 593 (598)
Q Consensus 578 l~~~g~~v~~~DP~~~ 593 (598)
|.++|++|.+|||++.
T Consensus 343 L~~~g~~V~~~DP~v~ 358 (425)
T PRK15182 343 LGKYSCKVDIFDPWVD 358 (425)
T ss_pred HHhCCCEEEEECCCCC
Confidence 9999999999999964
No 16
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.95 E-value=2.7e-28 Score=264.92 Aligned_cols=269 Identities=22% Similarity=0.331 Sum_probs=191.6
Q ss_pred cCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEE
Q psy11160 181 QGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRIL 260 (598)
Q Consensus 181 ~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~ 260 (598)
..+.+|+++++++++.|++++++|.+||++||+||||++++...+.+. +.++ ..|+....+.++...++|||+.
T Consensus 89 ~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~---~~~~---~~~~~~g~~~~f~v~~~PE~~~ 162 (415)
T PRK11064 89 GDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA---RPDL---TFPQQAGEQADINIAYCPERVL 162 (415)
T ss_pred CCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh---ccCC---cccccccCCCCeEEEECCCccC
Confidence 346899999999999999999999999999999999999887655541 2211 3455444556788899999986
Q ss_pred EccCCCchhHHHHHHHHHHHhcccCCceEEec-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCC
Q psy11160 261 IGGEETPEGYAAIESLSWVYEHWIPRKHILTT-NTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 261 vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~-~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~ 339 (598)
.|. +..... ...++..| +..+.+ .+...|.... . ......++..+|++|+++|.
T Consensus 163 ~G~--------~~~~~~-------~~~~vvgG~~~~~~~---~~~~ly~~~~----~---~~~~~~~~~~Ae~~Kl~~N~ 217 (415)
T PRK11064 163 PGQ--------VMVELI-------KNDRVIGGMTPVCSA---RASELYKIFL----E---GECVVTNSRTAEMCKLTENS 217 (415)
T ss_pred CCC--------hhhhhc-------CCCEEEEeCCHHHHH---HHHHHHHHhc----C---CCeeeCCHHHHHHHHHHHHH
Confidence 552 222111 12344333 333333 3333333211 0 01123466778999999987
Q ss_pred ccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHH
Q psy11160 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHV 419 (598)
Q Consensus 340 ~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~l 419 (598)
.+ ...++| +|++..+|+++|++. .++++.+. .+.+|
T Consensus 218 ~~------a~~ia~--------~nE~~~lae~~GiD~-----~~v~~~~~---~~~ri---------------------- 253 (415)
T PRK11064 218 FR------DVNIAF--------ANELSLICADQGINV-----WELIRLAN---RHPRV---------------------- 253 (415)
T ss_pred HH------HHHHHH--------HHHHHHHHHHhCCCH-----HHHHHHhc---cCCCc----------------------
Confidence 65 456788 999999999999983 46666542 12222
Q ss_pred HHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCC
Q psy11160 420 CRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKP 499 (598)
Q Consensus 420 i~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~ 499 (598)
..+.|++ ++||| |++.|++.+++.+. + + +
T Consensus 254 -----------~~l~pG~--------------G~GG~---ClpkD~~~L~~~~~---------~----~----------~ 282 (415)
T PRK11064 254 -----------NILQPGP--------------GVGGH---CIAVDPWFIVAQNP---------Q----Q----------A 282 (415)
T ss_pred -----------ccCCCCC--------------CCCCc---cccccHHHHHHhcC---------C----c----------c
Confidence 2234543 37888 99999987644321 0 0 1
Q ss_pred cEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHh-------cCCCCCCEEEEEeeecCCCCCCcCCCchH
Q psy11160 500 AYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSL-------FNTVSDKHIAILGFAFKKNTGDTRESPAI 572 (598)
Q Consensus 500 ~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~-------~~~~~~~~i~v~GlafK~~~~d~R~sp~~ 572 (598)
.+ .++++++|+.||+++++++.+.+ ++++++++|+|||+|||+||||+|+||++
T Consensus 283 ~l-------------------~~~a~~~N~~~~~~v~~~~~~~l~~~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~ 343 (415)
T PRK11064 283 RL-------------------IRTAREVNDGKPHWVIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAM 343 (415)
T ss_pred HH-------------------HHHHHHHHHHhHHHHHHHHHHHHhhhhhhhccCcCCCEEEEEeeEECCCCcchhhChHH
Confidence 01 15678999999999999999976 45688999999999999999999999999
Q ss_pred HHHHHHHhCC-CEEEEECCCCCC
Q psy11160 573 HVCRTLLYEG-AKLKIYDPKLMS 594 (598)
Q Consensus 573 ~i~~~l~~~g-~~v~~~DP~~~~ 594 (598)
.|++.|.++| ++|.+|||++..
T Consensus 344 ~l~~~L~~~gg~~v~~~DP~~~~ 366 (415)
T PRK11064 344 EIAELIAQWHSGETLVVEPNIHQ 366 (415)
T ss_pred HHHHHHHhcCCcEEEEECCCCCc
Confidence 9999999996 999999999753
No 17
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.95 E-value=2.8e-26 Score=238.81 Aligned_cols=241 Identities=18% Similarity=0.192 Sum_probs=197.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+||+|||+|.||.+||..|++ +|++|++||+++++++.+.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~---------------------------~G~~V~v~d~~~~~~~~~~~~----------- 43 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLK---------------------------QGHQLQVFDVNPQAVDALVDK----------- 43 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHH---------------------------CCCeEEEEcCCHHHHHHHHHc-----------
Confidence 589999999999999999999 899999999999999988742
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+...+.++.+++++||+||+|+|++. .++.++ +.+.+.+++++++|+.||++|.+
T Consensus 44 --------g~~~~~s~~~~~~~aDvVi~~vp~~~--------------~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~ 101 (296)
T PRK15461 44 --------GATPAASPAQAAAGAEFVITMLPNGD--------------LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQ 101 (296)
T ss_pred --------CCcccCCHHHHHhcCCEEEEecCCHH--------------HHHHHHcCcccHhhcCCCCCEEEECCCCCHHH
Confidence 12345677788999999999997652 234443 45777788999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+++++.. +.+ .| +.++++|.
T Consensus 102 ~~~l~~~-------------------------------------------------------l~~---~g--~~~ldapV 121 (296)
T PRK15461 102 TDKLIAD-------------------------------------------------------MQA---KG--FSMMDVPV 121 (296)
T ss_pred HHHHHHH-------------------------------------------------------HHH---cC--CcEEEccC
Confidence 9887752 222 12 45789999
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
...+..+..+.+ .+|+||++ +++++++++++.++. ..+++++.++|+.+|+++|++...+++.++|...+|
T Consensus 122 ~g~~~~a~~g~l---~~~~gg~~-----~~~~~~~p~l~~~g~-~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~ 192 (296)
T PRK15461 122 GRTSDNAITGTL---LLLAGGTA-----EQVERATPILMAMGN-ELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLC 192 (296)
T ss_pred CCCHHHHHhCcE---EEEECCCH-----HHHHHHHHHHHHHcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876655555555 47899975 589999999999984 677889999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccc--------ccc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 323 EATGADVSEVAKAVGLDSRIGA--------KFL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~--------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
++.|+|++.++++++.....++ .++ ++.++|....+.||+++..+.+++.|++
T Consensus 193 ~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~ 255 (296)
T PRK15461 193 EALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVP 255 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHHcCCC
Confidence 9999999999999986532111 111 3567898999999999999999999987
No 18
>KOG0409|consensus
Probab=99.95 E-value=1.5e-26 Score=232.34 Aligned_cols=245 Identities=18% Similarity=0.232 Sum_probs=203.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|++||+|.||.+|+.+|.+ +||.|++||++.++.+.+...
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik---------------------------~G~kVtV~dr~~~k~~~f~~~---------- 77 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIK---------------------------AGYKVTVYDRTKDKCKEFQEA---------- 77 (327)
T ss_pred cceeeEEeeccchHHHHHHHHH---------------------------cCCEEEEEeCcHHHHHHHHHh----------
Confidence 4789999999999999999999 999999999999999998852
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~STv~~~~~ 163 (598)
+.+...+|.|+++++|+||.+||+|.+ .+.+...-..+.+.++++... |++||+.|+++
T Consensus 78 ---------Ga~v~~sPaeVae~sDvvitmv~~~~~-----------v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s 137 (327)
T KOG0409|consen 78 ---------GARVANSPAEVAEDSDVVITMVPNPKD-----------VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTS 137 (327)
T ss_pred ---------chhhhCCHHHHHhhcCEEEEEcCChHh-----------hHHHhcCCCcceeeccCCCceEEeccccCHHHH
Confidence 245567899999999999999998853 222222234566777787766 89999999999
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
++|++. ++. .+..++++|+.
T Consensus 138 ~ei~~~-------------------------------------------------------i~~-----~~~~~vDAPVS 157 (327)
T KOG0409|consen 138 LEIAKA-------------------------------------------------------ISN-----KGGRFVDAPVS 157 (327)
T ss_pred HHHHHH-------------------------------------------------------HHh-----CCCeEEecccc
Confidence 988762 111 22457899998
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
+....+..+.+ .|++||++ +.++.+.++|+.+++ ..++.|..+.++.+|+++|+..+..+..+.|...+++
T Consensus 158 Gg~~~A~~G~L---timagGde-----~~~~~~~~~~~~mGk-~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~ 228 (327)
T KOG0409|consen 158 GGVKGAEEGTL---TIMAGGDE-----ALFEAASPVFKLMGK-NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALAD 228 (327)
T ss_pred CCchhhhcCeE---EEEecCcH-----HHHHHHHHHHHHhcc-eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87666777777 58999976 578999999999984 6778899999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHcCCcccccccc---------ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 324 ATGADVSEVAKAVGLDSRIGAKFL---------QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~~~l---------~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
++|+|...+++++++..-.++.+. ++.++|+...+.||++..+..|++.+.+
T Consensus 229 r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~ 289 (327)
T KOG0409|consen 229 RLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESVKVP 289 (327)
T ss_pred HcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhccCCC
Confidence 999999999999998543333322 4778999999999999999999999876
No 19
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.95 E-value=6.1e-26 Score=235.62 Aligned_cols=253 Identities=19% Similarity=0.243 Sum_probs=198.1
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
||+|||+|.||.+||..|++ .|++|++||+++++++.+.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~---------------------------~G~~V~~~dr~~~~~~~~~~~------------ 41 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAK---------------------------AGYQLHVTTIGPEVADELLAA------------ 41 (291)
T ss_pred CEEEEEecHHHHHHHHHHHH---------------------------CCCeEEEEcCCHHHHHHHHHC------------
Confidence 59999999999999999999 899999999999999887742
Q ss_pred HhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHHH
Q psy11160 87 VKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+...++++.+++++||+||+|+|++. .++.++ +.+.+.++++++|++.||+.|.++
T Consensus 42 -------g~~~~~~~~~~~~~aDivi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~ 100 (291)
T TIGR01505 42 -------GAVTAETARQVTEQADVIFTMVPDSP--------------QVEEVAFGENGIIEGAKPGKTLVDMSSISPIES 100 (291)
T ss_pred -------CCcccCCHHHHHhcCCEEEEecCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHH
Confidence 12234567788999999999998642 244443 456677889999999999999999
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+++... +.. .| ++++++|.+
T Consensus 101 ~~l~~~-------------------------------------------------------l~~---~g--~~~~~~pv~ 120 (291)
T TIGR01505 101 KRFAKA-------------------------------------------------------VKE---KG--IDYLDAPVS 120 (291)
T ss_pred HHHHHH-------------------------------------------------------HHH---cC--CCEEecCCC
Confidence 877652 222 12 457788988
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
+.+..+..+.. .+++||++ ++++.++++++.++. .++++++.+.|+.+|+++|++...++++++|+..+|+
T Consensus 121 g~~~~a~~g~l---~i~~gg~~-----~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~ 191 (291)
T TIGR01505 121 GGEIGAIEGTL---SIMVGGDQ-----AVFDRVKPLFEALGK-NIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFAS 191 (291)
T ss_pred CCHHHHhcCCE---EEEecCCH-----HHHHHHHHHHHHhcC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655555443 47889864 588999999999984 5677888899999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh-hHHHHHHHHHHHH
Q psy11160 324 ATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP-EVASYWQQLYESL 388 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~-~~~~~~~~~i~~~ 388 (598)
+.|+|+.++.+++..+...++ .+. ++.++|+..|+.||++.+.+.+++.|++ .+.+.+.++.+.+
T Consensus 192 ~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a 266 (291)
T TIGR01505 192 KAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGANLPNTATVQELFNTL 266 (291)
T ss_pred HcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 999999999999985432111 111 3458899999999999999999999986 2333333444433
No 20
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.95 E-value=1.4e-25 Score=233.45 Aligned_cols=242 Identities=18% Similarity=0.244 Sum_probs=196.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+|+|+|||+|.||.++|..|++ .|++|++||+++++++.+.+.
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~---------------------------~g~~v~~~d~~~~~~~~~~~~---------- 44 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLK---------------------------AGYSLVVYDRNPEAVAEVIAA---------- 44 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHH---------------------------CCCeEEEEcCCHHHHHHHHHC----------
Confidence 3689999999999999999999 899999999999998877642
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+...++++.+++++||+||+|+|++. .++.++ +++.+.++++++|++.||+.|.
T Consensus 45 ---------g~~~~~~~~e~~~~~d~vi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iiid~st~~~~ 101 (296)
T PRK11559 45 ---------GAETASTAKAVAEQCDVIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVVIDMSSIAPL 101 (296)
T ss_pred ---------CCeecCCHHHHHhcCCEEEEeCCCHH--------------HHHHHHcCcchHhhcCCCCcEEEECCCCCHH
Confidence 23456778888899999999997642 344444 5677888999999999999999
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
+++++... +.. .| ++++++|
T Consensus 102 ~~~~l~~~-------------------------------------------------------~~~---~g--~~~~d~p 121 (296)
T PRK11559 102 ASREIAAA-------------------------------------------------------LKA---KG--IEMLDAP 121 (296)
T ss_pred HHHHHHHH-------------------------------------------------------HHH---cC--CcEEEcC
Confidence 98877651 222 12 4578899
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAV 321 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~l 321 (598)
+++.++.+..+.. .+++||+. ++++.++++++.++. .++++++.++|+.+|+++|++.+.++++++|+..+
T Consensus 122 v~g~~~~a~~g~l---~i~~gg~~-----~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l 192 (296)
T PRK11559 122 VSGGEPKAIDGTL---SVMVGGDK-----AIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVL 192 (296)
T ss_pred CCCCHHHHhhCcE---EEEECCCH-----HHHHHHHHHHHHhcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9877665555544 37889864 578999999999974 56778888999999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHcCCcccc-------cccc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 322 CEATGADVSEVAKAVGLDSRIG-------AKFL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 322 a~~~gid~~ev~~~l~~~~ri~-------~~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
|++.|+|++++.+++.+..-.+ ..++ ++.++|...++.||++++.+.|++.|++
T Consensus 193 ~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~ 255 (296)
T PRK11559 193 ATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAP 255 (296)
T ss_pred HHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998643111 1111 4567899999999999999999999987
No 21
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.94 E-value=2e-25 Score=231.88 Aligned_cols=240 Identities=19% Similarity=0.208 Sum_probs=191.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.+||..|.+ .|++|++||+++. .+.+.+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~---------------------------~G~~v~v~~~~~~-~~~~~~------------ 40 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLAR---------------------------AGHQLHVTTIGPV-ADELLS------------ 40 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHH---------------------------CCCeEEEEeCCHh-HHHHHH------------
Confidence 489999999999999999999 8999999999874 344432
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+.....++.+++++||+||+|||++. .+++++ ..+.+.+.++++||++||+.|.+
T Consensus 41 -------~g~~~~~s~~~~~~~advVi~~v~~~~--------------~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~ 99 (292)
T PRK15059 41 -------LGAVSVETARQVTEASDIIFIMVPDTP--------------QVEEVLFGENGCTKASLKGKTIVDMSSISPIE 99 (292)
T ss_pred -------cCCeecCCHHHHHhcCCEEEEeCCChH--------------HHHHHHcCCcchhccCCCCCEEEECCCCCHHH
Confidence 123345677788899999999998652 455555 34667788999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+++++.. +.+ .| ..++++|.
T Consensus 100 ~~~~~~~-------------------------------------------------------~~~---~G--~~~vdaPV 119 (292)
T PRK15059 100 TKRFARQ-------------------------------------------------------VNE---LG--GDYLDAPV 119 (292)
T ss_pred HHHHHHH-------------------------------------------------------HHH---cC--CCEEEecC
Confidence 9888752 222 23 35688898
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
...+..+..+.+ .+++||+. +++++++++|+.++. ..+++|+.++|+.+|+++|++.+.++..++|...++
T Consensus 120 sGg~~~a~~g~l---~~~~gG~~-----~~~~~~~p~l~~~g~-~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la 190 (292)
T PRK15059 120 SGGEIGAREGTL---SIMVGGDE-----AVFERVKPLFELLGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFA 190 (292)
T ss_pred CCCHHHHhcCcE---EEEEcCCH-----HHHHHHHHHHHHHcC-CcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765544444443 47889975 689999999999984 677899999999999999999999999999999999
Q ss_pred HHcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 323 EATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 323 ~~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
++.|+|++++++++....--++ .++ ++.++|....+.||+++..+.|++.|++
T Consensus 191 ~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~ 252 (292)
T PRK15059 191 SKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALN 252 (292)
T ss_pred HHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999976532111 122 3567899999999999999999999987
No 22
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.94 E-value=1.9e-25 Score=231.77 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=195.4
Q ss_pred EECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh
Q psy11160 10 CIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKK 89 (598)
Q Consensus 10 viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~ 89 (598)
|||+|.||.+||..|++ .||+|++||+++++++.+.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~---------------------------~G~~V~v~dr~~~~~~~l~~~--------------- 38 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLK---------------------------AGHPVRVFDLFPDAVEEAVAA--------------- 38 (288)
T ss_pred CCcccHhHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHc---------------
Confidence 68999999999999999 899999999999999988742
Q ss_pred hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchHHHHHH
Q psy11160 90 TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVRAAESI 166 (598)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~~~~~~ 166 (598)
+...+.++.+++++||+||+|||++. .+++++ +++.+.++++++||+.||+.|.+++++
T Consensus 39 ----g~~~~~s~~~~~~~advVil~vp~~~--------------~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~ 100 (288)
T TIGR01692 39 ----GAQAAASPAEAAEGADRVITMLPAGQ--------------HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKL 100 (288)
T ss_pred ----CCeecCCHHHHHhcCCEEEEeCCChH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHH
Confidence 23456778889999999999998753 355555 678888899999999999999999877
Q ss_pred HHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCc
Q psy11160 167 MNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSE 246 (598)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~ 246 (598)
.. .+.+ .| ..++++|+++.+
T Consensus 101 ~~-------------------------------------------------------~~~~---~g--~~~vdaPv~Gg~ 120 (288)
T TIGR01692 101 AE-------------------------------------------------------LAAA---HG--AVFMDAPVSGGV 120 (288)
T ss_pred HH-------------------------------------------------------HHHH---cC--CcEEECCCCCCH
Confidence 65 2222 23 457999998876
Q ss_pred CchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy11160 247 GTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATG 326 (598)
Q Consensus 247 G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~g 326 (598)
..+..+.+ .+|+||+. +++++++++|+.++. ..+++|+.++++.+|+++|++.+.+++.++|...+|++.|
T Consensus 121 ~~a~~g~l---~~~~gg~~-----~~~~~~~~~l~~~g~-~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G 191 (288)
T TIGR01692 121 GGARAGTL---TFMVGGVA-----EEFAAAEPVLGPMGR-NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG 191 (288)
T ss_pred HHHhhCcE---EEEECCCH-----HHHHHHHHHHHHhcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66655555 47899975 578999999999974 5777888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHcCCcccccc--------------c--cccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 327 ADVSEVAKAVGLDSRIGAK--------------F--LQASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 327 id~~ev~~~l~~~~ri~~~--------------~--l~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+|++.+.+++++....++. . -++.++|....+.||++...+.|++.|++
T Consensus 192 ld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~ 256 (288)
T TIGR01692 192 LDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAP 256 (288)
T ss_pred CCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCC
Confidence 9999999999965321110 0 14556788889999999999999999987
No 23
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.94 E-value=6.8e-27 Score=251.34 Aligned_cols=251 Identities=18% Similarity=0.227 Sum_probs=172.5
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEE
Q psy11160 182 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILI 261 (598)
Q Consensus 182 ~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~v 261 (598)
...+||+|++++++.|++ ++++.+||++||||||||++ +... + ......++|||+..
T Consensus 89 ~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~----l~~~--------~----------~~~~v~~~PE~l~~ 145 (388)
T PRK15057 89 TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAA----MHKK--------Y----------RTENIIFSPEFLRE 145 (388)
T ss_pred CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHH----HHHH--------h----------hcCcEEECcccccC
Confidence 357899999999999998 79999999999999999972 3320 1 11234679999988
Q ss_pred ccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCC
Q psy11160 262 GGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSS-ELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 262 Gg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~A-e~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~ 339 (598)
|.. ++ +++ ..+++.+|. ...+ +.++++...+....+ .. ...+...+|++|+++|.
T Consensus 146 G~a--------~~---d~~----~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~------~~--~~~~~~~AE~~Kl~~N~ 202 (388)
T PRK15057 146 GKA--------LY---DNL----HPSRIVIGERSERAERFAALLQEGAIKQNI------PT--LFTDSTEAEAIKLFANT 202 (388)
T ss_pred Ccc--------cc---ccc----CCCEEEEEcCcHHHHHHHHHHHhhhhcCCC------ce--eeCCHHHHHHHHHHHHH
Confidence 742 22 121 124555543 2222 222222111111001 00 13566778999999987
Q ss_pred ccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHH
Q psy11160 340 SRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHV 419 (598)
Q Consensus 340 ~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~l 419 (598)
.+ ..+++| +|+++.+|+++|++. .++++.+. .+.||+ .
T Consensus 203 ~~------a~~Ia~--------~NE~a~lae~~GiD~-----~eV~~a~~---~d~ri~---~----------------- 240 (388)
T PRK15057 203 YL------AMRVAY--------FNELDSYAESLGLNT-----RQIIEGVC---LDPRIG---N----------------- 240 (388)
T ss_pred HH------HHHHHH--------HHHHHHHHHHhCcCH-----HHHHHHhc---CCCCCC---C-----------------
Confidence 65 556788 999999999999983 46666553 122221 0
Q ss_pred HHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCC
Q psy11160 420 CRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKP 499 (598)
Q Consensus 420 i~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~ 499 (598)
..+.|+ +++||| |++.|++.++..+. +.+.+
T Consensus 241 -----------~~l~pG--------------~G~GG~---ClpkD~~~L~~~~~------------~~~~~--------- 271 (388)
T PRK15057 241 -----------HYNNPS--------------FGYGGY---CLPKDTKQLLANYQ------------SVPNN--------- 271 (388)
T ss_pred -----------ccCCCC--------------CCCCCc---ChhhhHHHHHHhcc------------CCCcH---------
Confidence 111243 347888 99999987643320 00100
Q ss_pred cEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHH
Q psy11160 500 AYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLL 579 (598)
Q Consensus 500 ~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~ 579 (598)
+ .++++++|+.||+++++++.+. ++++|+||||||||||||+||||++.|++.|.
T Consensus 272 -l-------------------~~~~~~~N~~~~~~~~~~~~~~-----~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~ 326 (388)
T PRK15057 272 -L-------------------ISAIVDANRTRKDFIADAILSR-----KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIK 326 (388)
T ss_pred -H-------------------HHHHHHHHHHhHHHHHHHHHHh-----cCCEEEEEcceeCCCCCccccChHHHHHHHHH
Confidence 1 2567899999999999999863 57899999999999999999999999999999
Q ss_pred hCCCEEEEECCCCCC
Q psy11160 580 YEGAKLKIYDPKLMS 594 (598)
Q Consensus 580 ~~g~~v~~~DP~~~~ 594 (598)
++|++|.+|||++..
T Consensus 327 ~~G~~v~~~DP~~~~ 341 (388)
T PRK15057 327 AKGVEVIIYEPVMKE 341 (388)
T ss_pred hCCCEEEEECCCCCc
Confidence 999999999999754
No 24
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.8e-26 Score=239.32 Aligned_cols=214 Identities=22% Similarity=0.368 Sum_probs=165.9
Q ss_pred CcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEec-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTT-NTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 245 ~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~-~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
..|.++...++|||+++|... .++. ...+++.| ++.++|+++.+...+.. ..+-
T Consensus 150 ~~~~Df~laysPERv~PG~~~--------~el~-------~~~kVIgG~tp~~~e~a~~lY~~iv~----------~~~~ 204 (436)
T COG0677 150 KFGEDFYLAYSPERVLPGNVL--------KELV-------NNPKVIGGVTPKCAELAAALYKTIVE----------GVIP 204 (436)
T ss_pred cccceeeEeeCccccCCCchh--------hhhh-------cCCceeecCCHHHHHHHHHHHHHheE----------EEEE
Confidence 345678889999999999642 2222 13455443 56777776655444432 2445
Q ss_pred HcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEecc
Q psy11160 324 ATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFA 403 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGla 403 (598)
..+...+||.|+++|.+| +.++++ +|+|+-+|+++|++. | ++|+.++.
T Consensus 205 vts~~tAEm~Kl~EN~fR------dVNIAL--------aNElali~~~~GIdv----w-evIeaAnt------------- 252 (436)
T COG0677 205 VTSARTAEMVKLTENTFR------DVNIAL--------ANELALICNAMGIDV----W-EVIEAANT------------- 252 (436)
T ss_pred cCChHHHHHHHHHhhhhh------HHHHHH--------HHHHHHHHHHhCCcH----H-HHHHHhcc-------------
Confidence 677888999999999988 789999 999999999999993 4 88887631
Q ss_pred ccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccc
Q psy11160 404 FKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDE 483 (598)
Q Consensus 404 fK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~ 483 (598)
| ..+.+|.|+. ++||| |++.|||+.+..+ ++
T Consensus 253 -~----------------------P~~~~~~PGp--------------GvGGH---CIpvDP~fl~~ka---------~~ 283 (436)
T COG0677 253 -K----------------------PRVNIFYPGP--------------GVGGH---CIPVDPYFLTWKA---------PE 283 (436)
T ss_pred -C----------------------CceeecCCCC--------------CCCCc---ccccCchheeecc---------cc
Confidence 1 1256677753 48999 9999999987765 23
Q ss_pred hhhccHHHHHhccCCCcEEEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHh---cCCCCCCEEEEEeeecC
Q psy11160 484 FVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSL---FNTVSDKHIAILGFAFK 560 (598)
Q Consensus 484 f~~ld~~~l~~~m~~~~iI~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~---~~~~~~~~i~v~GlafK 560 (598)
|.. .+.+| +++|++|+.||.|+++++.+.| ++.+++.+|+|||||||
T Consensus 284 yg~-----------~~rlI-------------------~tAreIN~~mP~~Vv~~~~~al~~~~k~~~~skIlvlGlayK 333 (436)
T COG0677 284 YGL-----------PARLI-------------------RTAREINDSMPRHVVDRVKEALNKAGKPLSGSKILVLGLAYK 333 (436)
T ss_pred cCC-----------chHHH-------------------HHHHHHhccCCHHHHHHHHHHHHHcCCCCcCceEEEEEeeec
Confidence 221 11122 6789999999999999999866 67788999999999999
Q ss_pred CCCCCcCCCchHHHHHHHHhCCCEEEEECCCCCC
Q psy11160 561 KNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMS 594 (598)
Q Consensus 561 ~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~~~ 594 (598)
+|+||+||||+++|++.|.++|++|.+|||++.+
T Consensus 334 ~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~ 367 (436)
T COG0677 334 GDVDDLRESPALDIIELLEEWGGEVLVYDPYVKE 367 (436)
T ss_pred CCCcccccCchHHHHHHHHHhCCeEEEECCCCCc
Confidence 9999999999999999999999999999999974
No 25
>PLN02858 fructose-bisphosphate aldolase
Probab=99.92 E-value=2.2e-23 Score=252.79 Aligned_cols=244 Identities=14% Similarity=0.103 Sum_probs=199.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|+||.+||..|++ .||+|++||+++++.+.+...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~---------------------------~G~~V~v~dr~~~~~~~l~~~---------- 366 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLK---------------------------SNFSVCGYDVYKPTLVRFENA---------- 366 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHc----------
Confidence 3789999999999999999999 899999999999999887642
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH---HHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA---RMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.....++.+++++||+||+|||+|. .+++++ ..+.+.+++++++|++||+.|+
T Consensus 367 ---------Ga~~~~s~~e~~~~aDvVi~~V~~~~--------------~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~ 423 (1378)
T PLN02858 367 ---------GGLAGNSPAEVAKDVDVLVIMVANEV--------------QAENVLFGDLGAVSALPAGASIVLSSTVSPG 423 (1378)
T ss_pred ---------CCeecCCHHHHHhcCCEEEEecCChH--------------HHHHHHhchhhHHhcCCCCCEEEECCCCCHH
Confidence 12345678889999999999999874 344554 4577778899999999999999
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
++++++.. +.+ .|.++.++++|
T Consensus 424 ~~~~la~~-------------------------------------------------------l~~---~g~g~~~lDAP 445 (1378)
T PLN02858 424 FVIQLERR-------------------------------------------------------LEN---EGRDIKLVDAP 445 (1378)
T ss_pred HHHHHHHH-------------------------------------------------------HHh---hCCCcEEEEcc
Confidence 99888752 222 13456789999
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEE-ecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHIL-TTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~-~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
+.+.+..+..+.+ .+|+||++ +++++++++|+.++. ..++ .++.++|+.+|+++|++.+.+++.++|+..
T Consensus 446 VsGg~~~A~~G~L---~imvgG~~-----~~~~~~~plL~~lg~-~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~ 516 (1378)
T PLN02858 446 VSGGVKRAAMGTL---TIMASGTD-----EALKSAGSVLSALSE-KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMA 516 (1378)
T ss_pred CCCChhhhhcCCc---eEEEECCH-----HHHHHHHHHHHHHhC-cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9877665655555 48899975 589999999999984 4555 457999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHcCCccccc-------ccc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 321 VCEATGADVSEVAKAVGLDSRIGA-------KFL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 321 la~~~gid~~ev~~~l~~~~ri~~-------~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+|++.|+|++.++++++.....++ .++ ++.++|....+.||++++.+.+++.|++
T Consensus 517 la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~ 580 (1378)
T PLN02858 517 FGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIP 580 (1378)
T ss_pred HHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999986543222 122 3567899999999999999999999987
No 26
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.92 E-value=4.4e-25 Score=239.96 Aligned_cols=269 Identities=28% Similarity=0.369 Sum_probs=182.8
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEE
Q psy11160 182 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILI 261 (598)
Q Consensus 182 ~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~v 261 (598)
.+.+|+++++++++.|+++++++.+|+.+||+||||++ ++..+.++... ....+..+....+|++...
T Consensus 91 ~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~---~l~~~~~~~~~---------g~~~~~d~~v~~~Pe~~~~ 158 (411)
T TIGR03026 91 DGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTE---EVVKPILERAS---------GLKLGEDFYLAYNPEFLRE 158 (411)
T ss_pred CCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchH---HHHHHHHHhhc---------CCCCCCCceEEECCCcCCC
Confidence 46899999999999999999999999999999999997 34444322100 0112344556778887655
Q ss_pred ccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCcc
Q psy11160 262 GGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSR 341 (598)
Q Consensus 262 Gg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~r 341 (598)
|. +. ..++. ...+.+| +..+..+.+..+|....- + ......++..+|++|+++|..+
T Consensus 159 G~--------~~---~~~~~----~~~iv~G--~~~~~~~~~~~l~~~~~~---~---~~~~~~~~~~Ae~~Kl~~N~~~ 215 (411)
T TIGR03026 159 GN--------AV---HDLLN----PDRIVGG--ETEEAGEAVAELYAPIIE---D---GPVLVTSIETAEMIKLAENTFR 215 (411)
T ss_pred CC--------hh---hhhcC----CCEEEEe--CCHHHHHHHHHHHHHhcc---C---CCEEcCCHHHHHHHHHHHHHHH
Confidence 53 22 12221 2455555 234445555544443210 0 1112345667899999988654
Q ss_pred ccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHH
Q psy11160 342 IGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCR 421 (598)
Q Consensus 342 i~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~ 421 (598)
...++| +|++..+|+++|++. .++++.+.. +.+|+
T Consensus 216 ------a~~ia~--------~nE~~~la~~~GiD~-----~~v~~~~~~---~~~i~----------------------- 250 (411)
T TIGR03026 216 ------AVKIAF--------ANELARICEALGIDV-----YEVIEAAGT---DPRIG----------------------- 250 (411)
T ss_pred ------HHHHHH--------HHHHHHHHHHhCCCH-----HHHHHHhCC---CCCCC-----------------------
Confidence 345677 999999999999983 345544321 11110
Q ss_pred HHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcE
Q psy11160 422 TLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAY 501 (598)
Q Consensus 422 ~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~i 501 (598)
...|.|.++ +|++ |++.|+..+++.+. +......+
T Consensus 251 --------~~~~~pg~g--------------~gg~---c~~KD~~~l~~~a~--------------------~~g~~~~l 285 (411)
T TIGR03026 251 --------FNFLNPGPG--------------VGGH---CIPKDPLALIYKAK--------------------ELGYNPEL 285 (411)
T ss_pred --------CCcCCCCCC--------------CCCC---chhhhHHHHHHHHH--------------------hcCCCcHH
Confidence 123455542 4566 88888877654331 00000101
Q ss_pred EEecCCCCChhhhhhccceeeeccchhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhC
Q psy11160 502 IFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581 (598)
Q Consensus 502 I~D~r~i~d~~~~~~~G~~y~~v~~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~ 581 (598)
..++.++|+.||+++++++.+.+ +++.+++|+|||+||||||||+||||++.|++.|.++
T Consensus 286 -------------------~~~~~~~N~~~~~~~~~~~~~~l-~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~ 345 (411)
T TIGR03026 286 -------------------IEAAREINDSQPDYVVEKILDLL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEK 345 (411)
T ss_pred -------------------HHHHHHHHHHhHHHHHHHHHHHh-hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhC
Confidence 15678999999999999999999 5789999999999999999999999999999999999
Q ss_pred CCEEEEECCCCCCc
Q psy11160 582 GAKLKIYDPKLMSR 595 (598)
Q Consensus 582 g~~v~~~DP~~~~~ 595 (598)
|++|.+|||++..+
T Consensus 346 g~~v~~~DP~~~~~ 359 (411)
T TIGR03026 346 GAKVKAYDPLVPEE 359 (411)
T ss_pred CCEEEEECCCCChh
Confidence 99999999998654
No 27
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.91 E-value=1e-22 Score=223.56 Aligned_cols=250 Identities=13% Similarity=0.102 Sum_probs=198.5
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++|+|||||.||.+||.+|++ +||+|++||+++++++.+.+.... .|.
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~---------------------------~G~~V~V~NRt~~k~~~l~~~~~~---~Ga 54 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAE---------------------------KGFPISVYNRTTSKVDETVERAKK---EGN 54 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHh---------------------------CCCeEEEECCCHHHHHHHHHhhhh---cCC
Confidence 35789999999999999999999 899999999999999988752000 000
Q ss_pred HHHHhhhcCCceEEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
..+....+++++++. +|+||+|||.+. .++++++.+.+.+.++++||+.||+.|
T Consensus 55 ---------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~--------------aV~~Vi~gl~~~l~~G~iiID~sT~~~ 111 (493)
T PLN02350 55 ---------LPLYGFKDPEDFVLSIQKPRSVIILVKAGA--------------PVDQTIKALSEYMEPGDCIIDGGNEWY 111 (493)
T ss_pred ---------cccccCCCHHHHHhcCCCCCEEEEECCCcH--------------HHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 113355678887775 999999997753 578888899999999999999999999
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~ 240 (598)
.++++++. .+++ .+++++++
T Consensus 112 ~~t~~~~~-------------------------------------------------------~l~~-----~Gi~flda 131 (493)
T PLN02350 112 ENTERRIK-------------------------------------------------------EAAE-----KGLLYLGM 131 (493)
T ss_pred HHHHHHHH-------------------------------------------------------HHHH-----cCCeEEeC
Confidence 99977764 2333 23578999
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC-----ceEEecCchhHHHHHHHHHHHHHHHHHHH
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR-----KHILTTNTWSSELSKLAANAFLAQRISSI 315 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~-----~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~ 315 (598)
|+++.+-.+..+ | .+|+||+. +++++++++++.++.+ ..+++|+.++|..+|+++|.+....+..+
T Consensus 132 pVSGG~~gA~~G---~-~im~GG~~-----~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~i 202 (493)
T PLN02350 132 GVSGGEEGARNG---P-SLMPGGSF-----EAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLI 202 (493)
T ss_pred CCcCCHHHhcCC---C-eEEecCCH-----HHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 998766545444 3 58999976 6899999999999832 36788999999999999999999999999
Q ss_pred HHHHHHHHH-cCCCHHHHHHHH---cCCccccc------c-cc---ccCccccccchhhhHH------HHHHHHHHcCCh
Q psy11160 316 NSLSAVCEA-TGADVSEVAKAV---GLDSRIGA------K-FL---QASVGFGGSCFQKDIL------NLVYICECLNLP 375 (598)
Q Consensus 316 nE~~~la~~-~gid~~ev~~~l---~~~~ri~~------~-~l---~~~~gfgg~cl~KD~~------~L~~~a~~~G~~ 375 (598)
.|...++++ .|+|++++.+++ +.+.-.++ . +. +++++|-...+.||++ .....|.++|++
T Consensus 203 aEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~ 282 (493)
T PLN02350 203 SEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVA 282 (493)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCC
Confidence 999999998 699999999984 34321111 1 11 2556788899999999 899999999986
No 28
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=99.91 E-value=4e-24 Score=189.28 Aligned_cols=106 Identities=42% Similarity=0.655 Sum_probs=87.5
Q ss_pred EEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEEEE
Q psy11160 398 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVV 477 (598)
Q Consensus 398 ~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adalii 477 (598)
+|||+|||+||+|+||||++.|++.|.++|++|.+|||++..+....... ..++.++.+++++++++|++|+
T Consensus 1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~D~vvl 72 (106)
T PF03720_consen 1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGK--------LEGVEVCDDLEEALKGADAVVL 72 (106)
T ss_dssp EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH--------HHCEEEESSHHHHHTTESEEEE
T ss_pred CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCC--------ccceEEecCHHHHhcCCCEEEE
Confidence 68999999999999999999999999999999999999999887654210 0146778899999999999999
Q ss_pred EeeccchhhccHHHHHhccCCCcEEEecCCCCCh
Q psy11160 478 CTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH 511 (598)
Q Consensus 478 ~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~ 511 (598)
+|+|++|++++|+.+...|+++++|+|+||++|+
T Consensus 73 ~t~h~~f~~l~~~~~~~~~~~~~~iiD~~~~~d~ 106 (106)
T PF03720_consen 73 ATDHDEFRELDWEEIAKLMRKPPVIIDGRNILDP 106 (106)
T ss_dssp SS--GGGGCCGHHHHHHHSCSSEEEEESSSTSTH
T ss_pred EecCHHHhccCHHHHHHhcCCCCEEEECccccCc
Confidence 9999999999999999999888899999999985
No 29
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.91 E-value=2.7e-22 Score=209.30 Aligned_cols=241 Identities=14% Similarity=0.121 Sum_probs=190.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|+|+|||+|.||.+||..|++ +|++|++||+++++.+.+.+.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~---------------------------~g~~v~v~dr~~~~~~~~~~~----------- 42 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRE---------------------------DGHEVVGYDVNQEAVDVAGKL----------- 42 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHHC-----------
Confidence 489999999999999999999 899999999999999887642
Q ss_pred HHhhhcCCceEEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+...+.++++++++ +|+||+|+|++. .++++++.+.+.++++++||+.||+.|.+
T Consensus 43 --------g~~~~~s~~~~~~~~~~advVi~~vp~~~--------------~~~~v~~~i~~~l~~g~ivid~st~~~~~ 100 (299)
T PRK12490 43 --------GITARHSLEELVSKLEAPRTIWVMVPAGE--------------VTESVIKDLYPLLSPGDIVVDGGNSRYKD 100 (299)
T ss_pred --------CCeecCCHHHHHHhCCCCCEEEEEecCch--------------HHHHHHHHHhccCCCCCEEEECCCCCchh
Confidence 23456677777766 699999998652 46777788888899999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+++++. .+.+ .| +.++++|.
T Consensus 101 ~~~~~~-------------------------------------------------------~~~~---~g--~~~vdapV 120 (299)
T PRK12490 101 DLRRAE-------------------------------------------------------ELAE---RG--IHYVDCGT 120 (299)
T ss_pred HHHHHH-------------------------------------------------------HHHH---cC--CeEEeCCC
Confidence 987765 1222 23 45789998
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC--ceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR--KHILTTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~--~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
.+.+-.+..+. .+++||+. +++++++++++.++.. ..+++|+.++|..+|+++|++....+..+.|...
T Consensus 121 ~G~~~~a~~g~----~~~~gG~~-----~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~ 191 (299)
T PRK12490 121 SGGVWGLRNGY----CLMVGGDK-----EIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLE 191 (299)
T ss_pred CCCHHHHhcCC----eEEecCCH-----HHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87654444442 37899975 5899999999999841 4678899999999999999999999999999999
Q ss_pred HHHHcC--CCHHHHHHHHcCCcccccc--------ccccCccccccchhhhH---HHHHHHHHHcCCh
Q psy11160 321 VCEATG--ADVSEVAKAVGLDSRIGAK--------FLQASVGFGGSCFQKDI---LNLVYICECLNLP 375 (598)
Q Consensus 321 la~~~g--id~~ev~~~l~~~~ri~~~--------~l~~~~gfgg~cl~KD~---~~L~~~a~~~G~~ 375 (598)
++++.| +|+.+++++++......+. +..-...+....+.||+ ....+.|.+.|++
T Consensus 192 l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~l~~~~KD~~~~~l~~~~A~~~g~~ 259 (299)
T PRK12490 192 LLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGIKGYVNDSGEGRWTVEEAIELAVA 259 (299)
T ss_pred HHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChhhhhHHHHhcCcHHHHHHHHHHcCCC
Confidence 999999 9999999999864311111 11101123457788998 6888899999987
No 30
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.89 E-value=4.4e-21 Score=200.34 Aligned_cols=241 Identities=16% Similarity=0.169 Sum_probs=186.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|+|+|||+|.||.+||..|++ +|++|++||+++++.+.+.+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~---------------------------~g~~v~v~dr~~~~~~~~~~~----------- 42 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLR---------------------------GGHEVVGYDRNPEAVEALAEE----------- 42 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHH---------------------------CCCeEEEEECCHHHHHHHHHC-----------
Confidence 489999999999999999999 899999999999999887642
Q ss_pred HHhhhcCCceEEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+.+.+.++++.++. +|+||+|+|.+. .++++++.+.+.+++++++|+.||+.|.+
T Consensus 43 --------g~~~~~~~~e~~~~~~~~dvvi~~v~~~~--------------~~~~v~~~l~~~l~~g~ivid~st~~~~~ 100 (301)
T PRK09599 43 --------GATGADSLEELVAKLPAPRVVWLMVPAGE--------------ITDATIDELAPLLSPGDIVIDGGNSYYKD 100 (301)
T ss_pred --------CCeecCCHHHHHhhcCCCCEEEEEecCCc--------------HHHHHHHHHHhhCCCCCEEEeCCCCChhH
Confidence 23456677777665 699999997652 46777788888899999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+++++. .+++ .| +.++++|.
T Consensus 101 ~~~~~~-------------------------------------------------------~~~~---~g--~~~~dapv 120 (301)
T PRK09599 101 DIRRAE-------------------------------------------------------LLAE---KG--IHFVDVGT 120 (301)
T ss_pred HHHHHH-------------------------------------------------------HHHH---cC--CEEEeCCC
Confidence 877664 1222 23 45788998
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC---ceEEecCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR---KHILTTNTWSSELSKLAANAFLAQRISSINSLS 319 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~---~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~ 319 (598)
.+.+..+..+. .+|+||+. +++++++++++.+... ..+++|+.++|..+|+++|++....+....|..
T Consensus 121 sG~~~~a~~g~----~~~~gG~~-----~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~ 191 (301)
T PRK09599 121 SGGVWGLERGY----CLMIGGDK-----EAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGF 191 (301)
T ss_pred CcCHHHHhcCC----eEEecCCH-----HHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87654444442 48899975 6899999999999841 467889999999999999999999999999999
Q ss_pred HHHHH--cCCCHHHHHHHHcCCccccccc-------cccCcccc-ccchhhh---HHHHHHHHHHcCCh
Q psy11160 320 AVCEA--TGADVSEVAKAVGLDSRIGAKF-------LQASVGFG-GSCFQKD---ILNLVYICECLNLP 375 (598)
Q Consensus 320 ~la~~--~gid~~ev~~~l~~~~ri~~~~-------l~~~~gfg-g~cl~KD---~~~L~~~a~~~G~~ 375 (598)
.++++ .|+|+.+++++++...-+++.+ +.-++.|. ..-+.|| ++.....|.+.|++
T Consensus 192 ~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~A~~~~~~ 260 (301)
T PRK09599 192 ELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYVEDSGEGRWTVEEAIDLAVP 260 (301)
T ss_pred HHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCcHHHHHHHHHHcCCC
Confidence 99999 9999999999998654222211 11122221 1123455 47788888888876
No 31
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.85 E-value=1.1e-19 Score=199.40 Aligned_cols=208 Identities=13% Similarity=0.135 Sum_probs=170.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~e~~~~ 84 (598)
++|+|||+|.||.+||.+|++ +||+|++||+++++++.+++. ..+ +
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~---------------------------~G~~V~v~dr~~~~~~~l~~~~~~~----g-- 48 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIAS---------------------------RGFKISVYNRTYEKTEEFVKKAKEG----N-- 48 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHHhhhhc----C--
Confidence 589999999999999999999 899999999999999988752 110 0
Q ss_pred HHHhhhcCCceEEecCHHHHhc---cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQ---KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~---~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
..+..+.+++++++ ++|+||++|+.+ ..++++++++.+.+.++++||+.||..+.
T Consensus 49 --------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~--------------~~v~~vi~~l~~~L~~g~iIID~gn~~~~ 106 (470)
T PTZ00142 49 --------TRVKGYHTLEELVNSLKKPRKVILLIKAG--------------EAVDETIDNLLPLLEKGDIIIDGGNEWYL 106 (470)
T ss_pred --------CcceecCCHHHHHhcCCCCCEEEEEeCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCCHH
Confidence 12456778888876 589999998654 26888889999999999999999999998
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
.+++... .+.+ .+++++++|
T Consensus 107 dt~~r~~-------------------------------------------------------~l~~-----~Gi~fldap 126 (470)
T PTZ00142 107 NTERRIK-------------------------------------------------------RCEE-----KGILYLGMG 126 (470)
T ss_pred HHHHHHH-------------------------------------------------------HHHH-----cCCeEEcCC
Confidence 8866653 1222 235689999
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC-----ceEEecCchhHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR-----KHILTTNTWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~-----~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
..+.+..+.++ | .+|+||+. +++++++++++.+... ...++|+.++|..+|+++|.+....+..+.
T Consensus 127 VSGG~~gA~~G---~-~lm~GG~~-----~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~ia 197 (470)
T PTZ00142 127 VSGGEEGARYG---P-SLMPGGNK-----EAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLIS 197 (470)
T ss_pred CCCCHHHHhcC---C-EEEEeCCH-----HHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHH
Confidence 88765444443 2 59999976 6899999999999852 157789999999999999999999999999
Q ss_pred HHHHHHH-HcCCCHHHHHHHHc
Q psy11160 317 SLSAVCE-ATGADVSEVAKAVG 337 (598)
Q Consensus 317 E~~~la~-~~gid~~ev~~~l~ 337 (598)
|...+++ +.|+|..++.+++.
T Consensus 198 Ea~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 198 ESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHHhhcCCCHHHHHHHHH
Confidence 9999998 79999999999985
No 32
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.84 E-value=3.1e-19 Score=186.20 Aligned_cols=205 Identities=14% Similarity=0.179 Sum_probs=165.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|+|+|||+|.||.+||..|++ +|++|++||+++++++.+.+...
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~---------------------------~g~~V~~~dr~~~~~~~l~~~g~--------- 44 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAK---------------------------RGHDCVGYDHDQDAVKAMKEDRT--------- 44 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHcCC---------
Confidence 489999999999999999999 89999999999999998875211
Q ss_pred HHhhhcCCceEEecCHHH---HhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKS---AIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~---~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
....++.+ .+..+|+||+|||.+ .++++++++.+.++++++||+.||+.|.+
T Consensus 45 ----------~~~~s~~~~~~~~~~~dvIi~~vp~~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~ 99 (298)
T TIGR00872 45 ----------TGVANLRELSQRLSAPRVVWVMVPHG---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKD 99 (298)
T ss_pred ----------cccCCHHHHHhhcCCCCEEEEEcCch---------------HHHHHHHHHHhhCCCCCEEEECCCCCccc
Confidence 11223333 345789999998764 47888889999999999999999999888
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
++++.. .+++ .++.++++|.
T Consensus 100 t~~~~~-------------------------------------------------------~~~~-----~g~~~vda~v 119 (298)
T TIGR00872 100 SLRRYK-------------------------------------------------------LLKE-----KGIHLLDCGT 119 (298)
T ss_pred HHHHHH-------------------------------------------------------HHHh-----cCCeEEecCC
Confidence 866654 1222 1246788888
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC--ceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR--KHILTTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~--~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
.+.+..+..+. .+++||+. ++++.++++++.+... ..+++|+.+++..+|+++|.+....+....|...
T Consensus 120 sGg~~~a~~G~----~~~~gG~~-----~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~ 190 (298)
T TIGR00872 120 SGGVWGRERGY----CFMIGGDG-----EAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFE 190 (298)
T ss_pred CCCHHHHhcCC----eeeeCCCH-----HHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76554444442 47899975 6889999999999852 3678899999999999999999999999999999
Q ss_pred HHHHc--CCCHHHHHHHHcCCc
Q psy11160 321 VCEAT--GADVSEVAKAVGLDS 340 (598)
Q Consensus 321 la~~~--gid~~ev~~~l~~~~ 340 (598)
++++. |+|..++.++++...
T Consensus 191 l~~~~g~~ld~~~~~~i~~~g~ 212 (298)
T TIGR00872 191 ILRNSQFDFDIPEVARVWRRGS 212 (298)
T ss_pred HHHHcCCCcCHHHHHHHHcCCc
Confidence 99998 579999999998754
No 33
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.81 E-value=1.7e-18 Score=190.23 Aligned_cols=207 Identities=15% Similarity=0.181 Sum_probs=165.9
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
+|+|||+|.||.+||..|++ +||+|++||+++++++.+.+...+ +
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~---------------------------~G~~V~v~drt~~~~~~l~~~~~~----g---- 45 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMAD---------------------------HGFTVSVYNRTPEKTDEFLAEHAK----G---- 45 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHh---------------------------cCCeEEEEeCCHHHHHHHHhhccC----C----
Confidence 48999999999999999999 899999999999999988742000 0
Q ss_pred HhhhcCCceEEecCHHHHh---ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 87 VKKTRDVNLFFSTDIKSAI---QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~---~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
..+....++++.+ +.+|+||+|||.+. .+.++++.+.+.++++++||+.||+.+..+
T Consensus 46 ------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~--------------~v~~Vi~~l~~~L~~g~iIID~gns~~~~t 105 (467)
T TIGR00873 46 ------KKIVGAYSIEEFVQSLERPRKIMLMVKAGA--------------PVDAVINQLLPLLEKGDIIIDGGNSHYPDT 105 (467)
T ss_pred ------CCceecCCHHHHHhhcCCCCEEEEECCCcH--------------HHHHHHHHHHhhCCCCCEEEECCCcCHHHH
Confidence 1133445566544 46899999997642 578888899999999999999999988887
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
++.+. .+.+ .+++++++|..
T Consensus 106 ~~~~~-------------------------------------------------------~l~~-----~gi~fvdapVs 125 (467)
T TIGR00873 106 ERRYK-------------------------------------------------------ELKA-----KGILFVGSGVS 125 (467)
T ss_pred HHHHH-------------------------------------------------------HHHh-----cCCEEEcCCCC
Confidence 65543 1222 23568999988
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCc-----eEEecCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRK-----HILTTNTWSSELSKLAANAFLAQRISSINSL 318 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~-----~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~ 318 (598)
+.+..+.++. .+|+||+. +++++++|+++.+..+. ..++|+.++|..+|+++|.+....+..+.|.
T Consensus 126 GG~~gA~~G~----~im~GG~~-----~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa 196 (467)
T TIGR00873 126 GGEEGARKGP----SIMPGGSA-----EAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEA 196 (467)
T ss_pred CCHHHHhcCC----cCCCCCCH-----HHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655454443 48899976 68999999999998521 3678999999999999999999999999999
Q ss_pred HHHHH-HcCCCHHHHHHHHc
Q psy11160 319 SAVCE-ATGADVSEVAKAVG 337 (598)
Q Consensus 319 ~~la~-~~gid~~ev~~~l~ 337 (598)
..+++ +.|+|..++.+++.
T Consensus 197 ~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 197 YDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred HHHHHHhcCCCHHHHHHHHH
Confidence 99985 79999999999994
No 34
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=99.81 E-value=9.2e-20 Score=157.94 Aligned_cols=82 Identities=44% Similarity=0.718 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCC
Q psy11160 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNL 374 (598)
Q Consensus 295 ~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~ 374 (598)
++||++|+++|+|++++|+|+||++.+|+++|+|+.+|+++++.++|++..++.||+||||+|||||+.+|.+.+++.|.
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~~~~~pg~g~GG~ClpkD~~~L~~~~~~~g~ 81 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGPHYLRPGPGFGGSCLPKDPYALIYLAKELGY 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTSSS-S-SSS--SSCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccccccCCCCCCCCCcchhhhHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred hh
Q psy11160 375 PE 376 (598)
Q Consensus 375 ~~ 376 (598)
+.
T Consensus 82 ~~ 83 (96)
T PF00984_consen 82 PP 83 (96)
T ss_dssp HH
T ss_pred CH
Confidence 73
No 35
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.79 E-value=7e-18 Score=177.35 Aligned_cols=258 Identities=18% Similarity=0.208 Sum_probs=173.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~e~~~~ 84 (598)
|||+|||+|.||.++|..|++ .|++|++||+++++++.+++. ....+.++..
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~ 54 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLAR---------------------------NGHDVTLWARDPEQAAEINADRENPRYLPGIK 54 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHHcCcccccCCCCc
Confidence 689999999999999999999 899999999999999988863 2222222211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec-CCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS-TVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S-Tv~~~~~ 163 (598)
...+...++++++++++||+||+|||++ .++++++.+.+.+.++++|+..+ |+.+.+.
T Consensus 55 ------~~~~~~~~~~~~~~~~~~D~vi~~v~~~---------------~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~ 113 (325)
T PRK00094 55 ------LPDNLRATTDLAEALADADLILVAVPSQ---------------ALREVLKQLKPLLPPDAPIVWATKGIEPGTG 113 (325)
T ss_pred ------CCCCeEEeCCHHHHHhCCCEEEEeCCHH---------------HHHHHHHHHHhhcCCCCEEEEEeecccCCCC
Confidence 1234677788888889999999998753 47788889999888899888776 8888766
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+.+... +++.........++..|..
T Consensus 114 ~~~~~~-------------------------------------------------------l~~~~~~~~~~~~~~~P~~ 138 (325)
T PRK00094 114 KLLSEV-------------------------------------------------------LEEELPDLAPIAVLSGPSF 138 (325)
T ss_pred CcHHHH-------------------------------------------------------HHHHcCCCCceEEEECccH
Confidence 444331 1110000011234556654
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-----------------chhHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-----------------TWSSELSKLAANA 306 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-----------------~~~Ae~~Kl~~N~ 306 (598)
..+.. ...+..++.++.+. ++++.+.++|+..+- ......+ .+.++.+|+.+|.
T Consensus 139 ~~~~~----~g~~~~~~~~~~~~----~~~~~~~~~l~~~~~-~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~ 209 (325)
T PRK00094 139 AKEVA----RGLPTAVVIASTDE----ELAERVQELFHSPYF-RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNA 209 (325)
T ss_pred HHHHH----cCCCcEEEEEeCCH----HHHHHHHHHhCCCCE-EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccH
Confidence 33211 12223344444332 578889999986542 2222222 2667778999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc----ccc--ccccccCcccc--------------ccchhhhHHHHH
Q psy11160 307 FLAQRISSINSLSAVCEATGADVSEVAKAVGLDS----RIG--AKFLQASVGFG--------------GSCFQKDILNLV 366 (598)
Q Consensus 307 ~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~----ri~--~~~l~~~~gfg--------------g~cl~KD~~~L~ 366 (598)
+.+.....++|+..+|+++|+|+..+.+.+.... -.+ ++...++.-++ .....||+..+.
T Consensus 210 ~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~ 289 (325)
T PRK00094 210 RAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAVY 289 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHHH
Confidence 9999999999999999999999999988754320 001 11111111121 234469999999
Q ss_pred HHHHHcCCh
Q psy11160 367 YICECLNLP 375 (598)
Q Consensus 367 ~~a~~~G~~ 375 (598)
++++++|++
T Consensus 290 ~~a~~~~~~ 298 (325)
T PRK00094 290 ELAKKLGVE 298 (325)
T ss_pred HHHHHhCCC
Confidence 999999986
No 36
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.79 E-value=1.4e-18 Score=165.53 Aligned_cols=158 Identities=22% Similarity=0.241 Sum_probs=122.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|+||+|||+|.||.+||.+|++ +||+|++||+++++.+.+.+.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~---------------------------~g~~v~~~d~~~~~~~~~~~~---------- 43 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAK---------------------------AGYEVTVYDRSPEKAEALAEA---------- 43 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHH---------------------------TTTEEEEEESSHHHHHHHHHT----------
T ss_pred CCEEEEEchHHHHHHHHHHHHh---------------------------cCCeEEeeccchhhhhhhHHh----------
Confidence 4799999999999999999999 899999999999999988752
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHH--HHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARM--IAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~ivv~~STv~~~~ 162 (598)
+.+...++.+++++||+||+|||.+ ..+++++.+ +.+.+++++++|+.||+.|.+
T Consensus 44 ---------g~~~~~s~~e~~~~~dvvi~~v~~~--------------~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~ 100 (163)
T PF03446_consen 44 ---------GAEVADSPAEAAEQADVVILCVPDD--------------DAVEAVLFGENILAGLRPGKIIIDMSTISPET 100 (163)
T ss_dssp ---------TEEEESSHHHHHHHBSEEEE-SSSH--------------HHHHHHHHCTTHGGGS-TTEEEEE-SS--HHH
T ss_pred ---------hhhhhhhhhhHhhcccceEeecccc--------------hhhhhhhhhhHHhhccccceEEEecCCcchhh
Confidence 3678899999999999999998754 368888888 999999999999999999999
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
++++++ .+++ .++.++++|.
T Consensus 101 ~~~~~~-------------------------------------------------------~~~~-----~g~~~vdapV 120 (163)
T PF03446_consen 101 SRELAE-------------------------------------------------------RLAA-----KGVRYVDAPV 120 (163)
T ss_dssp HHHHHH-------------------------------------------------------HHHH-----TTEEEEEEEE
T ss_pred hhhhhh-------------------------------------------------------hhhh-----ccceeeeeee
Confidence 988775 2333 2367889998
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEe
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILT 291 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~ 291 (598)
.+.+..+.++.+ .+++||++ +++++++++++.++. .++++
T Consensus 121 ~Gg~~~a~~g~l---~~~~gG~~-----~~~~~~~~~l~~~~~-~v~~~ 160 (163)
T PF03446_consen 121 SGGPPGAEEGTL---TIMVGGDE-----EAFERVRPLLEAMGK-NVYHY 160 (163)
T ss_dssp ESHHHHHHHTTE---EEEEES-H-----HHHHHHHHHHHHHEE-EEEEE
T ss_pred ecccccccccce---EEEccCCH-----HHHHHHHHHHHHHhC-Cceee
Confidence 876555555554 48899975 689999999999983 34434
No 37
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.75 E-value=1.1e-16 Score=175.30 Aligned_cols=197 Identities=14% Similarity=0.160 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCce
Q psy11160 16 VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNL 95 (598)
Q Consensus 16 vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 95 (598)
||.+||.+|++ +||+|++||+++++.+.+.+...+ ..+.
T Consensus 1 MG~~mA~nL~~---------------------------~G~~V~v~nrt~~~~~~l~~~~g~--------------~~g~ 39 (459)
T PRK09287 1 MGKNLALNIAS---------------------------HGYTVAVYNRTPEKTDEFLAEEGK--------------GKKI 39 (459)
T ss_pred CcHHHHHHHHh---------------------------CCCeEEEECCCHHHHHHHHHhhCC--------------CCCe
Confidence 89999999999 899999999999999988752000 0236
Q ss_pred EEecCHHHHhcc---CcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHHHHHHHhh
Q psy11160 96 FFSTDIKSAIQK---AQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKA 172 (598)
Q Consensus 96 ~~~~~~~~~~~~---adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~~~~l~~ 172 (598)
+...+++++++. +|+||+|||.+. .+.++++++.+.+.++++||+.||+.|..+++.+.
T Consensus 40 ~~~~s~~e~v~~l~~~~~Ii~mv~~g~--------------~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~---- 101 (459)
T PRK09287 40 VPAYTLEEFVASLEKPRKILLMVKAGA--------------PVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREK---- 101 (459)
T ss_pred EeeCCHHHHHhhCCCCCEEEEECCCch--------------HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH----
Confidence 677889888774 899999998763 67888899999999999999999999999876654
Q ss_pred ccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhh
Q psy11160 173 NHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTD 252 (598)
Q Consensus 173 ~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~ 252 (598)
.+.+ .+++++++|..+.+..+.++
T Consensus 102 ---------------------------------------------------~l~~-----~Gi~fvdapVSGG~~gA~~G 125 (459)
T PRK09287 102 ---------------------------------------------------ELAE-----KGIHFIGMGVSGGEEGALHG 125 (459)
T ss_pred ---------------------------------------------------HHHh-----cCCeEEecCCCCCHHHHhcC
Confidence 2333 23578999988765545444
Q ss_pred cCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCce-------EEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy11160 253 LFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH-------ILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE-A 324 (598)
Q Consensus 253 ~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~-------v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~-~ 324 (598)
| .+|+||+. ++++.++|+++.+.. .. .++|+.++|..+|+++|.+....+..+.|...+++ +
T Consensus 126 ---~-siM~GG~~-----~a~~~~~piL~~ia~-~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~ 195 (459)
T PRK09287 126 ---P-SIMPGGQK-----EAYELVAPILEKIAA-KVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDG 195 (459)
T ss_pred ---C-EEEEeCCH-----HHHHHHHHHHHHHhh-hhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 58999976 689999999999984 33 67899999999999999999999999999999999 5
Q ss_pred cCCCHHHHHHHHc
Q psy11160 325 TGADVSEVAKAVG 337 (598)
Q Consensus 325 ~gid~~ev~~~l~ 337 (598)
.|+|..++.+++.
T Consensus 196 ~Gl~~~~l~~v~~ 208 (459)
T PRK09287 196 LGLSAEEIADVFA 208 (459)
T ss_pred cCCCHHHHHHHHH
Confidence 9999999999994
No 38
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.69 E-value=8.8e-15 Score=153.40 Aligned_cols=248 Identities=12% Similarity=0.058 Sum_probs=161.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+++|+|||+|.||.+||..|+. +|++|++||++++..+...+.. +..++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~---------------------------~G~~V~v~d~~~~~~~~~~~~~----~~~l~ 50 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFAR---------------------------AGHEVRLWDADPAAAAAAPAYI----AGRLE 50 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHH---------------------------CCCeeEEEeCCHHHHHHHHHHH----HHHHH
Confidence 4689999999999999999999 8999999999998887654210 00011
Q ss_pred HHHh---------hhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 85 EVVK---------KTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 85 ~~~~---------~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
.+.. .....++++++++.+++++||+|+.|+|.+. ......++.+.+..+++. ++.+
T Consensus 51 ~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~-ii~s 116 (308)
T PRK06129 51 DLAAFDLLDGEAPDAVLARIRVTDSLADAVADADYVQESAPENL-------------ELKRALFAELDALAPPHA-ILAS 116 (308)
T ss_pred HHHHcCCCchhhHHHHhcCeEEECcHHHhhCCCCEEEECCcCCH-------------HHHHHHHHHHHHhCCCcc-eEEE
Confidence 1100 0011357889999889999999999987642 123445566666555554 4455
Q ss_pred cCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCcee
Q psy11160 156 STVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 235 (598)
Q Consensus 156 STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~ 235 (598)
||.+. ...+++. .+.. .+.
T Consensus 117 sts~~-~~~~la~-------------------------------------------------------~~~~-----~~~ 135 (308)
T PRK06129 117 STSAL-LASAFTE-------------------------------------------------------HLAG-----RER 135 (308)
T ss_pred eCCCC-CHHHHHH-------------------------------------------------------hcCC-----ccc
Confidence 66544 3333432 1111 112
Q ss_pred eEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHH
Q psy11160 236 QILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSI 315 (598)
Q Consensus 236 ~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~ 315 (598)
.++..|.. +.... |-..++++... .+++++.++++++.++. .+++++..+.+. +++|+ ..+++
T Consensus 136 ~~~~hp~~--p~~~~-----~lveiv~~~~t--~~~~~~~~~~~~~~lG~-~~v~v~~~~~G~---i~nrl----~~a~~ 198 (308)
T PRK06129 136 CLVAHPIN--PPYLI-----PVVEVVPAPWT--APATLARAEALYRAAGQ-SPVRLRREIDGF---VLNRL----QGALL 198 (308)
T ss_pred EEEEecCC--CcccC-----ceEEEeCCCCC--CHHHHHHHHHHHHHcCC-EEEEecCCCccH---HHHHH----HHHHH
Confidence 34444432 11111 11235664332 24688999999999984 567776555553 45554 44788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHcCCccc-----ccccc--ccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 316 NSLSAVCEATGADVSEVAKAVGLDSRI-----GAKFL--QASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 316 nE~~~la~~~gid~~ev~~~l~~~~ri-----~~~~l--~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+|+..++++.++|++++.+++...... |+..+ .+++||-...+.||.+...+.+++.+.+
T Consensus 199 ~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~ 265 (308)
T PRK06129 199 REAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP 265 (308)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC
Confidence 999999999999999999999765432 22111 2346677788899999999999988864
No 39
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.67 E-value=1.6e-15 Score=160.24 Aligned_cols=254 Identities=14% Similarity=0.084 Sum_probs=168.5
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~e~~ 82 (598)
.+|||+|||+|.||.++|..|++ +||+|++|++++++.+.+++. ....+.++
T Consensus 3 ~~m~I~iIG~G~mG~~ia~~L~~---------------------------~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g 55 (328)
T PRK14618 3 HGMRVAVLGAGAWGTALAVLAAS---------------------------KGVPVRLWARRPEFAAALAAERENREYLPG 55 (328)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHHhCcccccCCC
Confidence 35799999999999999999999 899999999999999888852 22222222
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC-CchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST-VPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST-v~~~ 161 (598)
. ....++..++++.++++++|+||+|||.. .++++ .+.++++.+++..|| +.+.
T Consensus 56 ~------~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~---------------~~~~v----~~~l~~~~~vi~~~~Gi~~~ 110 (328)
T PRK14618 56 V------ALPAELYPTADPEEALAGADFAVVAVPSK---------------ALRET----LAGLPRALGYVSCAKGLAPD 110 (328)
T ss_pred C------cCCCCeEEeCCHHHHHcCCCEEEEECchH---------------HHHHH----HHhcCcCCEEEEEeeccccC
Confidence 1 01123667788888899999999998764 23333 355677888888888 5655
Q ss_pred H--HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEE
Q psy11160 162 A--AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILS 239 (598)
Q Consensus 162 ~--~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~ 239 (598)
+ .+.+.. .+.+.. ...+.+..
T Consensus 111 ~~~~~~l~~-------------------------------------------------------~l~~~~--~~~~~~~~ 133 (328)
T PRK14618 111 GGRLSELAR-------------------------------------------------------VLEFLT--QARVAVLS 133 (328)
T ss_pred CCccchHHH-------------------------------------------------------HHHHhc--CCCeEEEE
Confidence 3 333332 111100 00122333
Q ss_pred CCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceE--------EecC---------chhHHHHHH
Q psy11160 240 NPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHI--------LTTN---------TWSSELSKL 302 (598)
Q Consensus 240 ~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v--------~~~~---------~~~Ae~~Kl 302 (598)
.|............. .++.|++. +.++.++++|+..+- ... .++. .+.+..+|+
T Consensus 134 gP~~a~~~~~~~~~~---~~~~~~~~-----~~~~~v~~ll~~~~~-~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~ 204 (328)
T PRK14618 134 GPNHAEEIARFLPAA---TVVASPEP-----GLARRVQAAFSGPSF-RVYTSRDRVGVELGGALKNVIALAAGMVDGLKL 204 (328)
T ss_pred CccHHHHHHcCCCeE---EEEEeCCH-----HHHHHHHHHhCCCcE-EEEecCCccchhhhHHHHHHHHHHHHHHHHhCC
Confidence 443322111100111 25566653 578889999987652 222 1333 477889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCC-------cccccc------ccc------cCccccccchhhhHH
Q psy11160 303 AANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLD-------SRIGAK------FLQ------ASVGFGGSCFQKDIL 363 (598)
Q Consensus 303 ~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~-------~ri~~~------~l~------~~~gfgg~cl~KD~~ 363 (598)
.+|+..+.....++|+..++++.|+|++.+.++++.. ++.+.+ +.. ..++|......||+.
T Consensus 205 ~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~ 284 (328)
T PRK14618 205 GDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK 284 (328)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH
Confidence 9999999999999999999999999999999987741 111111 111 123455667889999
Q ss_pred HHHHHHHHcCCh
Q psy11160 364 NLVYICECLNLP 375 (598)
Q Consensus 364 ~L~~~a~~~G~~ 375 (598)
.+.+++++.|++
T Consensus 285 ~~~~la~~~~~~ 296 (328)
T PRK14618 285 ALDAWAKAHGHD 296 (328)
T ss_pred HHHHHHHHhCCC
Confidence 999999999986
No 40
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.64 E-value=4e-14 Score=150.03 Aligned_cols=246 Identities=14% Similarity=0.080 Sum_probs=162.2
Q ss_pred ceEEEECCC--------------------hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAG--------------------YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G--------------------~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|||.|.|+| |-|.+||..|++ +||+|++||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~---------------------------aG~~V~v~Dr~~ 53 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAE---------------------------AGHDVVLAEPNR 53 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHh---------------------------CCCeEEEEECCH
Confidence 589999998 468999999999 899999999998
Q ss_pred HHHH-----HHHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH
Q psy11160 66 ERIR-----QWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR 140 (598)
Q Consensus 66 ~~~~-----~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~ 140 (598)
++.+ .+.+ .+++.++++.+++++||+||+|+|.+. .++++++
T Consensus 54 ~~l~~~~~~~l~~-------------------~Gi~~asd~~eaa~~ADvVIlaVP~~~--------------~v~~Vl~ 100 (342)
T PRK12557 54 SILSEELWKKVED-------------------AGVKVVSDDAEAAKHGEIHILFTPFGK--------------KTVEIAK 100 (342)
T ss_pred HHhhHHHHHHHHH-------------------CCCEEeCCHHHHHhCCCEEEEECCCcH--------------HHHHHHH
Confidence 8543 2221 246677888888999999999987542 3678888
Q ss_pred HHHHHcCCCcEEEEecCCchHHH-HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhh
Q psy11160 141 MIAEIATDNKIVVEKSTVPVRAA-ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 219 (598)
Q Consensus 141 ~i~~~~~~~~ivv~~STv~~~~~-~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~ 219 (598)
.+.+.++++++|++.||+++... +.+.+.++.. .+.
T Consensus 101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~---------------------------~~~---------------- 137 (342)
T PRK12557 101 NILPHLPENAVICNTCTVSPVVLYYSLEGELRTK---------------------------RKD---------------- 137 (342)
T ss_pred HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhccc---------------------------ccc----------------
Confidence 99999999999999999999877 4444321000 000
Q ss_pred hHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCC---CchhHHHHHHHHHHHhcccCCceEEecCchh
Q psy11160 220 SIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEE---TPEGYAAIESLSWVYEHWIPRKHILTTNTWS 296 (598)
Q Consensus 220 ~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~---~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~ 296 (598)
.| +...+ |-.. .|..-... .++.|+.. ....++++++++++++.++. +++.++.+.
T Consensus 138 -----------~g--i~~~~-p~~v-~Gae~g~l----~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~--~v~~~~~g~ 196 (342)
T PRK12557 138 -----------VG--ISSMH-PAAV-PGTPQHGH----YVIAGKTTNGTELATEEQIEKCVELAESIGK--EPYVVPADV 196 (342)
T ss_pred -----------cC--eeecC-Cccc-cccccchh----eEEeCCCcccccCCCHHHHHHHHHHHHHcCC--EEEEeCHHH
Confidence 00 10000 1110 11100011 24444411 01123678999999999973 445566799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCCh
Q psy11160 297 SELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLP 375 (598)
Q Consensus 297 Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~ 375 (598)
+..+|+++|++.++.++...|...++++.+.++.++++-+-...-.+..-+--.-|+.|-.=.-|+..|...|+.+.+.
T Consensus 197 ~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (342)
T PRK12557 197 VSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASLVETSGVDGLLKALNPELLLRSASSMHLL 275 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcc
Confidence 9999999999999999999999999999999999998866532211110010011222222223566777777776654
No 41
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.57 E-value=1e-13 Score=145.44 Aligned_cols=232 Identities=16% Similarity=0.172 Sum_probs=148.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..|||+|||+|.||.+||..|++ +||+|++|++++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~---------------------------~G~~V~~~~r~~~----------------- 38 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASA---------------------------NGHRVRVWSRRSG----------------- 38 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHH---------------------------CCCEEEEEeCCCC-----------------
Confidence 35799999999999999999999 8999999999742
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-cCCCcEEEEecC-CchH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI-ATDNKIVVEKST-VPVR 161 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ivv~~ST-v~~~ 161 (598)
.++.++++++|+||+|+|++ .++++++.+.+. ++++++|+..|+ +.|.
T Consensus 39 ---------------~~~~~~~~~advvi~~vp~~---------------~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~ 88 (308)
T PRK14619 39 ---------------LSLAAVLADADVIVSAVSMK---------------GVRPVAEQVQALNLPPETIIVTATKGLDPE 88 (308)
T ss_pred ---------------CCHHHHHhcCCEEEEECChH---------------HHHHHHHHHHHhcCCCCcEEEEeCCcccCC
Confidence 24566788999999999753 467777888764 677888888776 6665
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
+.+.+.. .+..+.. +..+..+..|
T Consensus 89 ~~~~~s~---------------------------~~~~~~~-----------------------------~~~v~~i~gp 112 (308)
T PRK14619 89 TTRTPSQ---------------------------IWQAAFP-----------------------------NHPVVVLSGP 112 (308)
T ss_pred CCcCHHH---------------------------HHHHHcC-----------------------------CCceEEEECC
Confidence 5433322 1111110 0111223344
Q ss_pred cccCcCchhhhcCCCC-EEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-----------------chhHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNAD-RILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-----------------TWSSELSKLA 303 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~-rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-----------------~~~Ae~~Kl~ 303 (598)
....+ +.. ..|. .++.|++. ++.+.++++|+.+.- ..+..++ .+.++.+|+.
T Consensus 113 ~~a~e---i~~-~~~~~~~~ag~~~-----~~~~~v~~ll~~~~~-~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~ 182 (308)
T PRK14619 113 NLSKE---IQQ-GLPAATVVASRDL-----AAAETVQQIFSSERF-RVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLG 182 (308)
T ss_pred CcHHH---Hhc-CCCeEEEEEeCCH-----HHHHHHHHHhCCCcE-EEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 32110 000 0011 35556543 578889999987641 2222222 2224445588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc-cc-ccccc--ccCccccccch----------------hhhHH
Q psy11160 304 ANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDS-RI-GAKFL--QASVGFGGSCF----------------QKDIL 363 (598)
Q Consensus 304 ~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~-ri-~~~~l--~~~~gfgg~cl----------------~KD~~ 363 (598)
+|...+.....++|+..+++++|+|+..+.++..... .. ....+ ++.+||-..-. .||+.
T Consensus 183 ~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~ 262 (308)
T PRK14619 183 TNAKAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTAN 262 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHH
Confidence 9999999999999999999999999998877432110 00 00010 12234333333 78999
Q ss_pred HHHHHHHHcCCh
Q psy11160 364 NLVYICECLNLP 375 (598)
Q Consensus 364 ~L~~~a~~~G~~ 375 (598)
.+.+++++.|++
T Consensus 263 ~~~~~~~~~~~~ 274 (308)
T PRK14619 263 VLVQLAQQQNIA 274 (308)
T ss_pred HHHHHHHHcCCC
Confidence 999999999876
No 42
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.55 E-value=3.9e-13 Score=149.73 Aligned_cols=210 Identities=19% Similarity=0.173 Sum_probs=139.6
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-------C
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-------K 75 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-------~ 75 (598)
.+++||+|||+|.||.+||..|+. +|++|++||+++++.+.+.+. .
T Consensus 2 ~~i~kIavIG~G~MG~~iA~~la~---------------------------~G~~V~v~D~~~~~~~~~~~~~~~~~~~~ 54 (495)
T PRK07531 2 TMIMKAACIGGGVIGGGWAARFLL---------------------------AGIDVAVFDPHPEAERIIGEVLANAERAY 54 (495)
T ss_pred CCcCEEEEECcCHHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 446799999999999999999999 899999999999998765421 0
Q ss_pred CCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 76 LPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 76 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
..+....+ . ..+++++++++.+++++||+||.|+|... + ....++..+.+.++++. ++.+
T Consensus 55 ~~l~~~~~---~---~~g~i~~~~~~~ea~~~aD~Vieavpe~~-----------~--vk~~l~~~l~~~~~~~~-iI~S 114 (495)
T PRK07531 55 AMLTDAPL---P---PEGRLTFCASLAEAVAGADWIQESVPERL-----------D--LKRRVLAEIDAAARPDA-LIGS 114 (495)
T ss_pred hhhccchh---h---hhhceEeeCCHHHHhcCCCEEEEcCcCCH-----------H--HHHHHHHHHHhhCCCCc-EEEE
Confidence 00000000 0 01347888999889999999999997653 1 22345567777777765 5677
Q ss_pred cCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCcee
Q psy11160 156 STVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 235 (598)
Q Consensus 156 STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~ 235 (598)
||..+..+ .++. .+.. ++ -
T Consensus 115 sTsgi~~s-~l~~-------------------------------~~~~---------------------------~~--r 133 (495)
T PRK07531 115 STSGFLPS-DLQE-------------------------------GMTH---------------------------PE--R 133 (495)
T ss_pred cCCCCCHH-HHHh-------------------------------hcCC---------------------------cc--e
Confidence 77766544 2222 1111 11 1
Q ss_pred eEEECC---cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHH
Q psy11160 236 QILSNP---EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRI 312 (598)
Q Consensus 236 ~l~~~P---e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~i 312 (598)
.++..| .... |-..++||... .+++++.++++|+.++. .+++++ |.+.|.+....+
T Consensus 134 ~~~~hP~nP~~~~----------~Lvevv~g~~t--~~e~~~~~~~~~~~lG~-~~v~~~--------k~~~gfi~nrl~ 192 (495)
T PRK07531 134 LFVAHPYNPVYLL----------PLVELVGGGKT--SPETIRRAKEILREIGM-KPVHIA--------KEIDAFVGDRLL 192 (495)
T ss_pred EEEEecCCCcccC----------ceEEEcCCCCC--CHHHHHHHHHHHHHcCC-EEEeec--------CCCcchhHHHHH
Confidence 122233 3221 11356677642 24688999999999984 555554 455555544444
Q ss_pred HH-HHHHHHHHHHcCCCHHHHHHHHcCCcc
Q psy11160 313 SS-INSLSAVCEATGADVSEVAKAVGLDSR 341 (598)
Q Consensus 313 a~-~nE~~~la~~~gid~~ev~~~l~~~~r 341 (598)
.. ++|+..++++.|++++++-+++.....
T Consensus 193 ~a~~~EA~~L~~~g~~s~~~id~~~~~g~g 222 (495)
T PRK07531 193 EALWREALWLVKDGIATTEEIDDVIRYSFG 222 (495)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHhhccC
Confidence 44 599999999999999999999987653
No 43
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.55 E-value=1.3e-13 Score=143.15 Aligned_cols=212 Identities=20% Similarity=0.234 Sum_probs=139.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+++|+|||+|.||.++|..|++ +|++|++||+++++++.+++...++.+++.+
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~---------------------------~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~ 53 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAV---------------------------SGFQTTLVDIKQEQLESAQQEIASIFEQGVA 53 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHh---------------------------CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999 8999999999999999876542222211110
Q ss_pred -----HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecCC
Q psy11160 85 -----EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKSTV 158 (598)
Q Consensus 85 -----~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~STv 158 (598)
+.-......+++.++++.+++++||+||+|+|++. ..-..++.++.+.+++++++ +++||+
T Consensus 54 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~il~~~tSt~ 120 (288)
T PRK09260 54 RGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVPEKL-------------ELKKAVFETADAHAPAECYIATNTSTM 120 (288)
T ss_pred cCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 00000112457888999889999999999998653 12345667788889999866 789999
Q ss_pred chHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEE
Q psy11160 159 PVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQIL 238 (598)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~ 238 (598)
+|....+... ... .-...++.
T Consensus 121 ~~~~l~~~~~----------------------------------------------------------~~~-r~~g~h~~ 141 (288)
T PRK09260 121 SPTEIASFTK----------------------------------------------------------RPE-RVIAMHFF 141 (288)
T ss_pred CHHHHHhhcC----------------------------------------------------------Ccc-cEEEEecC
Confidence 9966432211 000 00123444
Q ss_pred ECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHHHHHHHHH
Q psy11160 239 SNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQRISSINS 317 (598)
Q Consensus 239 ~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~~ia~~nE 317 (598)
+|.... |-..|+||... .+++++.++++++.++. .++++++ ++- +.| .+...+.||
T Consensus 142 -~Pv~~~----------~Lve~v~g~~t--~~~~~~~~~~~l~~lg~-~~v~v~d~~Gf------~~n---Rl~~~~~~e 198 (288)
T PRK09260 142 -NPVHKM----------KLVELIRGLET--SDETVQVAKEVAEQMGK-ETVVVNEFPGF------VTS---RISALVGNE 198 (288)
T ss_pred -CCcccC----------ceEEEeCCCCC--CHHHHHHHHHHHHHcCC-eEEEecCcccH------HHH---HHHHHHHHH
Confidence 676432 11356777432 23689999999999984 5666654 332 223 233457789
Q ss_pred HHHHHHHcCCCHHHHHHHHcC
Q psy11160 318 LSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 318 ~~~la~~~gid~~ev~~~l~~ 338 (598)
...+.+.--.+++++=.++..
T Consensus 199 a~~~~~~gv~~~~~iD~~~~~ 219 (288)
T PRK09260 199 AFYMLQEGVATAEDIDKAIRL 219 (288)
T ss_pred HHHHHHcCCCCHHHHHHHHHh
Confidence 988887654677776666643
No 44
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.55 E-value=5.1e-13 Score=141.71 Aligned_cols=269 Identities=18% Similarity=0.197 Sum_probs=159.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCC-CCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPI-YEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~-~e~~~ 83 (598)
+|||+|||+|.||.++|..|++ +|++|++||+++. .+.+++....+ .+++.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~---------------------------~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~ 53 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAA---------------------------AGADVTLIGRARI-GDELRAHGLTLTDYRGR 53 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHh---------------------------cCCcEEEEecHHH-HHHHHhcCceeecCCCc
Confidence 3789999999999999999999 8999999999764 46666533222 22221
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+.. ....++++++++ +++.++|+||+||+++. +.++++.+.+.++++++|+.. +...+..
T Consensus 54 ~~~---~~~~~~~~~~~~-~~~~~~D~vil~vk~~~---------------~~~~~~~l~~~~~~~~iii~~-~nG~~~~ 113 (341)
T PRK08229 54 DVR---VPPSAIAFSTDP-AALATADLVLVTVKSAA---------------TADAAAALAGHARPGAVVVSF-QNGVRNA 113 (341)
T ss_pred cee---cccceeEeccCh-hhccCCCEEEEEecCcc---------------hHHHHHHHHhhCCCCCEEEEe-CCCCCcH
Confidence 110 011345667777 47889999999997652 456778888888888876654 3445554
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF 243 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~ 243 (598)
+.+.. .+....+ +...+|.+. ..
T Consensus 114 ~~l~~-------------------------------~~~~~~~--~~g~~~~~~------------------------~~ 136 (341)
T PRK08229 114 DVLRA-------------------------------ALPGATV--LAGMVPFNV------------------------IS 136 (341)
T ss_pred HHHHH-------------------------------hCCCCcE--EEEEEEEEE------------------------Ee
Confidence 44433 1111111 111111110 01
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHH------------
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQR------------ 311 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~------------ 311 (598)
..+|...+.... ++.+|.. ..++.+.++|+..+. .....++...++..|++.|++..+.
T Consensus 137 ~~pg~~~~~~~g--~l~~~~~------~~~~~~~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~ 207 (341)
T PRK08229 137 RGPGAFHQGTSG--ALAIEAS------PALRPFAAAFARAGL-PLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELA 207 (341)
T ss_pred cCCceEEecCCC--ceEecCC------chHHHHHHHHHhcCC-CceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhc
Confidence 111221111111 2334422 245778888887652 4556788999999999999754444
Q ss_pred --------HHHHHHHHHHHHHcCCCHHHHHHHHcCCc--------c----ccccccccCccccccchhhhHH--------
Q psy11160 312 --------ISSINSLSAVCEATGADVSEVAKAVGLDS--------R----IGAKFLQASVGFGGSCFQKDIL-------- 363 (598)
Q Consensus 312 --------ia~~nE~~~la~~~gid~~ev~~~l~~~~--------r----i~~~~l~~~~gfgg~cl~KD~~-------- 363 (598)
...+.|...++++.|+++..+.++..... . +.......... ....+.+|+.
T Consensus 208 ~~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sm~~D~~~~r~tEi~ 286 (341)
T PRK08229 208 QRSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL-ARSSMSDDLAAGRATEID 286 (341)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc-cCchHHHHHHcCCcchHH
Confidence 37789999999999998655432222110 0 00001111111 1357999999
Q ss_pred ----HHHHHHHHcCChh-HHHHHHHHHHHH
Q psy11160 364 ----NLVYICECLNLPE-VASYWQQLYESL 388 (598)
Q Consensus 364 ----~L~~~a~~~G~~~-~~~~~~~~i~~~ 388 (598)
++.+.|+++|++. ..+.+.++++..
T Consensus 287 ~i~G~i~~~a~~~gv~~P~~~~~~~~~~~~ 316 (341)
T PRK08229 287 WINGEIVRLAGRLGAPAPVNARLCALVHEA 316 (341)
T ss_pred HHhhHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 7999999999862 333333444443
No 45
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.4e-12 Score=127.64 Aligned_cols=208 Identities=15% Similarity=0.191 Sum_probs=153.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|+|+.||||.||..|+..|.+ .||+|++||+|++.++.+..-.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~---------------------------~ghdvV~yD~n~~av~~~~~~g---------- 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLD---------------------------GGHDVVGYDVNQTAVEELKDEG---------- 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHh---------------------------CCCeEEEEcCCHHHHHHHHhcC----------
Confidence 689999999999999999999 8999999999999999988421
Q ss_pred HHhhhcCCceEEecCHHH---HhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 86 VVKKTRDVNLFFSTDIKS---AIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~---~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+..+++.+ -+...-.|-++||.-. .+.++++++++.+..+.+||+-.......
T Consensus 44 ---------a~~a~sl~el~~~L~~pr~vWlMvPag~--------------it~~vi~~la~~L~~GDivIDGGNS~y~D 100 (300)
T COG1023 44 ---------ATGAASLDELVAKLSAPRIVWLMVPAGD--------------ITDAVIDDLAPLLSAGDIVIDGGNSNYKD 100 (300)
T ss_pred ---------CccccCHHHHHHhcCCCcEEEEEccCCC--------------chHHHHHHHHhhcCCCCEEEECCccchHH
Confidence 112222222 2345578999997642 46788999999999999999876665554
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
+.+-.+ .+.+ .+++++++--
T Consensus 101 s~rr~~-------------------------------------------------------~l~~-----kgi~flD~GT 120 (300)
T COG1023 101 SLRRAK-------------------------------------------------------LLAE-----KGIHFLDVGT 120 (300)
T ss_pred HHHHHH-------------------------------------------------------HHHh-----cCCeEEeccC
Confidence 432221 2333 2345565422
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCC--ceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPR--KHILTTNTWSSELSKLAANAFLAQRISSINSLSA 320 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~--~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~ 320 (598)
....-.+..+ + -+|+||++ ++++++.|+|..+.+. .-.++|+.+++..+|.++|-.-...++..+|-..
T Consensus 121 SGG~~G~~~G-~---~lMiGG~~-----~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfe 191 (300)
T COG1023 121 SGGVWGAERG-Y---CLMIGGDE-----EAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFE 191 (300)
T ss_pred CCCchhhhcC-c---eEEecCcH-----HHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHH
Confidence 2111112222 3 37899976 6899999999998752 3456889999999999999999999999999998
Q ss_pred HHHHc--CCCHHHHHHHHcCCccc
Q psy11160 321 VCEAT--GADVSEVAKAVGLDSRI 342 (598)
Q Consensus 321 la~~~--gid~~ev~~~l~~~~ri 342 (598)
+.+.. ++|..+|.++-++.+-|
T Consensus 192 lL~~s~fD~D~~~VA~vW~hGSVI 215 (300)
T COG1023 192 LLKNSPFDYDLEAVAEVWNHGSVI 215 (300)
T ss_pred HHHhCCCCCCHHHHHHHHhCcchH
Confidence 88774 78899999999887754
No 46
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.49 E-value=2e-12 Score=134.13 Aligned_cols=219 Identities=21% Similarity=0.300 Sum_probs=156.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~e~~~ 83 (598)
++||+|||.|.||+++|..|++ +||+|.+|.++++.+++++.. .++-|.|+.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~---------------------------ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i 53 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLAR---------------------------NGHEVRLWGRDEEIVAEINETRENPKYLPGI 53 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHh---------------------------cCCeeEEEecCHHHHHHHHhcCcCccccCCc
Confidence 3799999999999999999999 899999999999999999975 466666654
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC-CchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST-VPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST-v~~~~ 162 (598)
. .+.++++++|+.+++++||+|++.||+. .++++++++.+++++++++|..|- +.+++
T Consensus 54 ~------lp~~l~at~Dl~~a~~~ad~iv~avPs~---------------~~r~v~~~l~~~l~~~~~iv~~sKGie~~t 112 (329)
T COG0240 54 L------LPPNLKATTDLAEALDGADIIVIAVPSQ---------------ALREVLRQLKPLLLKDAIIVSATKGLEPET 112 (329)
T ss_pred c------CCcccccccCHHHHHhcCCEEEEECChH---------------HHHHHHHHHhhhccCCCeEEEEeccccCCC
Confidence 2 3467999999999999999999999764 688999999888999988887665 34444
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
.+. +.+++++.+. +..+.+++.|.
T Consensus 113 ~~l-------------------------------------------------------~seii~e~l~-~~~~~vLSGPs 136 (329)
T COG0240 113 GRL-------------------------------------------------------LSEIIEEELP-DNPIAVLSGPS 136 (329)
T ss_pred cch-------------------------------------------------------HHHHHHHHcC-CCeEEEEECcc
Confidence 322 2234444331 22367888887
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEe-cCch-----------------hHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILT-TNTW-----------------SSELSKLAA 304 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~-~~~~-----------------~Ae~~Kl~~ 304 (598)
+..+ -....|.-+++++.+. +..+.++.+|.. +.=+++. .+.. .++-+.+-+
T Consensus 137 ~A~E----Va~g~pta~~vas~d~----~~a~~v~~~f~~--~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~ 206 (329)
T COG0240 137 FAKE----VAQGLPTAVVVASNDQ----EAAEKVQALFSS--PYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGD 206 (329)
T ss_pred HHHH----HhcCCCcEEEEecCCH----HHHHHHHHHhCC--CcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 7532 1123466777877664 455666666653 0012222 1221 234455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHc
Q psy11160 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVG 337 (598)
Q Consensus 305 N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~ 337 (598)
|+-.+..--..+|+.++...+|.++..+.-+.+
T Consensus 207 NakaalitrGL~Em~rlg~~lG~~~~T~~gLsG 239 (329)
T COG0240 207 NAKAALITRGLAEMTRLGVALGAKPETFMGLSG 239 (329)
T ss_pred hHHHHHHHhHHHHHHHHHHHhCCCcchhccccc
Confidence 777788888899999999999999775554443
No 47
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.46 E-value=5.3e-12 Score=140.77 Aligned_cols=205 Identities=18% Similarity=0.167 Sum_probs=138.7
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH----------
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN---------- 72 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~---------- 72 (598)
..+++|+|||+|.||..||.+|+. +|++|++||++++.++...
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~---------------------------aG~~V~l~D~~~e~l~~~~~~i~~~l~~~ 57 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQ---------------------------AGHTVLLYDARAGAAAAARDGIAARLAKL 57 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999 8999999999999988742
Q ss_pred --cCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHH-HHHHHHHHHcCCC
Q psy11160 73 --SNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVE-AAARMIAEIATDN 149 (598)
Q Consensus 73 --~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 149 (598)
+|.. .+...+.. -.+++.+++++ ++++||+||.||+.+. .++ .++..+.+..+++
T Consensus 58 ~~~G~~--~~~~~~~~-----~~~i~~~~~~~-~~~~aDlViEav~E~~--------------~vK~~vf~~l~~~~~~~ 115 (507)
T PRK08268 58 VEKGKL--TAEQADAA-----LARLRPVEALA-DLADCDLVVEAIVERL--------------DVKQALFAQLEAIVSPD 115 (507)
T ss_pred HHcCCC--CHHHHHHH-----HhCeEEeCCHH-HhCCCCEEEEcCcccH--------------HHHHHHHHHHHhhCCCC
Confidence 2211 11111111 14588899996 5789999999997653 233 3456777778889
Q ss_pred cEE-EEecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhc
Q psy11160 150 KIV-VEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKAN 228 (598)
Q Consensus 150 ~iv-v~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~ 228 (598)
+++ .++||+++.. ++.. +..+
T Consensus 116 ailasntStl~i~~---la~~-------------------------------------------------------~~~p 137 (507)
T PRK08268 116 CILATNTSSLSITA---IAAA-------------------------------------------------------LKHP 137 (507)
T ss_pred cEEEECCCCCCHHH---HHhh-------------------------------------------------------cCCc
Confidence 888 5899999953 3321 0000
Q ss_pred ccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHH
Q psy11160 229 HKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAF 307 (598)
Q Consensus 229 ~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~ 307 (598)
- .-.+.++.. |.-.. +-..+++|... .+++++.+.++++.+++ .++++++ ++ ++.|-+
T Consensus 138 ~-r~~G~hff~-Pa~v~----------~LvEvv~g~~T--s~~~~~~~~~l~~~lgk-~pv~v~d~pG------fi~Nrl 196 (507)
T PRK08268 138 E-RVAGLHFFN-PVPLM----------KLVEVVSGLAT--DPAVADALYALARAWGK-TPVRAKDTPG------FIVNRA 196 (507)
T ss_pred c-cEEEEeecC-CcccC----------eeEEEeCCCCC--CHHHHHHHHHHHHHcCC-ceEEecCCCC------hHHHHH
Confidence 0 001123322 22111 11355666432 24788999999999984 5677764 45 344444
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHcC
Q psy11160 308 LAQRISSINSLSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 308 ~~~~ia~~nE~~~la~~~gid~~ev~~~l~~ 338 (598)
.. .+.+|...++++.+++++++-+++..
T Consensus 197 l~---~~~~Ea~~l~~~g~~~~~~iD~al~~ 224 (507)
T PRK08268 197 AR---PYYTEALRVLEEGVADPATIDAILRE 224 (507)
T ss_pred HH---HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 43 48899999999999999999999965
No 48
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.46 E-value=1.6e-11 Score=136.53 Aligned_cols=213 Identities=17% Similarity=0.156 Sum_probs=137.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC----CCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK----LPIY 79 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~----~~~~ 79 (598)
.++||+|||+|.||..||.+|+. +||+|++||++++.++...+.. ....
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~---------------------------aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~ 56 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAAS---------------------------AGHQVLLYDIRAEALARAIAGIEARLNSLV 56 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999 8999999999999987642210 0000
Q ss_pred CCC-hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE-EecC
Q psy11160 80 EPG-LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV-EKST 157 (598)
Q Consensus 80 e~~-~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv-~~ST 157 (598)
+.| +.+.-......+++.+++++ ++++||+||.|||.+. ..-+.++..+.+.+++++|+. ++||
T Consensus 57 ~~G~~~~~~~~~~~~~i~~~~~~~-~l~~aDlVIEav~E~~-------------~vK~~vf~~l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 57 TKGKLTAEECERTLKRLIPVTDLH-ALADAGLVIEAIVENL-------------EVKKALFAQLEELCPADTIIASNTSS 122 (503)
T ss_pred hcCCCCHHHHHHHHhccEEeCCHH-HhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 111 00000001124578899996 5789999999997653 122345677888888888765 6777
Q ss_pred CchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeE
Q psy11160 158 VPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQI 237 (598)
Q Consensus 158 v~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l 237 (598)
+++.. ++.. +..+.+ -...++
T Consensus 123 l~i~~---iA~~-------------------------------------------------------~~~p~r-~~G~HF 143 (503)
T TIGR02279 123 LSITA---IAAG-------------------------------------------------------LARPER-VAGLHF 143 (503)
T ss_pred CCHHH---HHHh-------------------------------------------------------cCcccc-eEEEec
Confidence 77742 2220 100000 011222
Q ss_pred EECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHHHHHHHH
Q psy11160 238 LSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 238 ~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
. +|.-.. +-..+++|... .+++++.+.++++.+++ .++++++ ++. +.|+++. .+.+
T Consensus 144 f-~Papv~----------~LvEvv~g~~T--s~e~~~~~~~l~~~lgk-~pv~v~d~pGf-----i~Nrl~~----~~~~ 200 (503)
T TIGR02279 144 F-NPAPVM----------ALVEVVSGLAT--AAEVAEQLYETALAWGK-QPVHCHSTPGF-----IVNRVAR----PYYA 200 (503)
T ss_pred c-CccccC----------ceEEEeCCCCC--CHHHHHHHHHHHHHcCC-eeeEeCCCCCc-----HHHHHHH----HHHH
Confidence 2 221111 11345677443 34789999999999984 5676764 442 4454443 5889
Q ss_pred HHHHHHHHcCCCHHHHHHHHcCC
Q psy11160 317 SLSAVCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 317 E~~~la~~~gid~~ev~~~l~~~ 339 (598)
|...+.++.+++++++-+++...
T Consensus 201 EA~~l~e~g~a~~~~ID~al~~~ 223 (503)
T TIGR02279 201 EALRALEEQVAAPAVLDAALRDG 223 (503)
T ss_pred HHHHHHHcCCCCHHHHHHHHHhc
Confidence 99999999999999999999753
No 49
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.43 E-value=8.6e-12 Score=130.86 Aligned_cols=212 Identities=15% Similarity=0.195 Sum_probs=134.1
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC---CCC
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK---LPI 78 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~---~~~ 78 (598)
|+.+++|+|||+|.||.++|..|+. .|++|++||+++++++.+++.. ...
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~---------------------------~g~~V~~~d~~~~~~~~~~~~~~~~~~~ 53 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFAR---------------------------KGLQVVLIDVMEGALERARGVIERALGV 53 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999 8999999999999988876421 000
Q ss_pred -CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 -YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 -~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.+.+..+ ....++++++++.+++++||+||+|||.+. .....++..+.+.++++++|+ ++|
T Consensus 54 ~~~~~~~~----~~~~~i~~~~~~~~~~~~aDlVi~av~~~~-------------~~~~~v~~~l~~~~~~~~ii~-s~t 115 (311)
T PRK06130 54 YAPLGIAS----AGMGRIRMEAGLAAAVSGADLVIEAVPEKL-------------ELKRDVFARLDGLCDPDTIFA-TNT 115 (311)
T ss_pred hhhcccHH----HHhhceEEeCCHHHHhccCCEEEEeccCcH-------------HHHHHHHHHHHHhCCCCcEEE-ECC
Confidence 0001100 011346788888888999999999997642 134556777777777776654 444
Q ss_pred CchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcC-CceEEEeccccchhhhhHHHHHhhcccCCceee
Q psy11160 158 VPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATD-NKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQ 236 (598)
Q Consensus 158 v~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~-~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~ 236 (598)
.... ..+++. .+.. ..++ + .+
T Consensus 116 sg~~-~~~l~~-------------------------------~~~~~~~~i------------------------g--~h 137 (311)
T PRK06130 116 SGLP-ITAIAQ-------------------------------AVTRPERFV------------------------G--TH 137 (311)
T ss_pred CCCC-HHHHHh-------------------------------hcCCcccEE------------------------E--Ec
Confidence 3332 223322 1100 0000 0 11
Q ss_pred EEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC--chhHHHHHHHHHHHHHHHHHH
Q psy11160 237 ILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN--TWSSELSKLAANAFLAQRISS 314 (598)
Q Consensus 237 l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~--~~~Ae~~Kl~~N~~~~~~ia~ 314 (598)
.. .|....+ + ..++.+... .+++++.+.++++.++. .++.++. ++. +++|++. .+
T Consensus 138 ~~-~p~~~~~------l----~~i~~g~~t--~~~~~~~v~~l~~~~G~-~~v~~~~d~~G~-----i~nr~~~----~~ 194 (311)
T PRK06130 138 FF-TPADVIP------L----VEVVRGDKT--SPQTVATTMALLRSIGK-RPVLVKKDIPGF-----IANRIQH----AL 194 (311)
T ss_pred cC-CCCccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-EEEEEcCCCCCc-----HHHHHHH----HH
Confidence 11 1211110 1 123344321 23688999999999973 4555543 333 6777644 67
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHcCC
Q psy11160 315 INSLSAVCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 315 ~nE~~~la~~~gid~~ev~~~l~~~ 339 (598)
++|...++++.++|++++-+++...
T Consensus 195 ~~Ea~~l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 195 AREAISLLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 8999999999999999999999643
No 50
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.42 E-value=6.2e-11 Score=123.11 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=86.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC---CCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK---LPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~---~~~~e~ 81 (598)
++||+|||+|.||.++|..|+. +|++|++||++++.++.+++.. .+.+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~---------------------------~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~ 55 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAF---------------------------HGFDVTIYDISDEALEKAKERIAKLADRYVR 55 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHh---------------------------cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999 8999999999999888765421 010000
Q ss_pred C--hHHHH-hhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecC
Q psy11160 82 G--LDEVV-KKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKST 157 (598)
Q Consensus 82 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~ST 157 (598)
. +..-- ......+++.++|+++++++||+||+|+|++. ....++++++.+.+++++++ ...||
T Consensus 56 ~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~sntSt 122 (287)
T PRK08293 56 DLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVPEDP-------------EIKGDFYEELAKVAPEKTIFATNSST 122 (287)
T ss_pred cCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCCEEEECccc
Confidence 0 00000 00012468889999989999999999998642 34567788899999988888 57777
Q ss_pred CchHH
Q psy11160 158 VPVRA 162 (598)
Q Consensus 158 v~~~~ 162 (598)
.++..
T Consensus 123 ~~~~~ 127 (287)
T PRK08293 123 LLPSQ 127 (287)
T ss_pred CCHHH
Confidence 76643
No 51
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.39 E-value=3.4e-10 Score=117.65 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=84.7
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC------
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN------ 74 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~------ 74 (598)
|++.+.||+|||+|.||..+|..|+. +|++|++||++++.++...+.
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~---------------------------~G~~V~l~d~~~~~~~~~~~~i~~~~~ 53 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCAR---------------------------AGVDVLVFETTEELATAGRNRIEKSLE 53 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHh---------------------------CCCEEEEEECCHHHHHHHHHHHHHHHH
Confidence 67778899999999999999999999 899999999999998862211
Q ss_pred ----CCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHc-CCC
Q psy11160 75 ----KLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIA-TDN 149 (598)
Q Consensus 75 ----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 149 (598)
...+.+...+.. ..+++.++|+ +++++||+||.|||... +.=...+..+.+.. +++
T Consensus 54 ~~~~~g~~~~~~~~~~-----~~~l~~~~~~-~~~~~~d~ViEav~E~~-------------~~K~~l~~~l~~~~~~~~ 114 (286)
T PRK07819 54 RAVSRGKLTERERDAA-----LARLRFTTDL-GDFADRQLVIEAVVEDE-------------AVKTEIFAELDKVVTDPD 114 (286)
T ss_pred HHHhcccCChhhHHHH-----HhCeEeeCCH-HHhCCCCEEEEecccCH-------------HHHHHHHHHHHHhhCCCC
Confidence 001111111111 2468889999 47899999999997643 22234567777777 789
Q ss_pred cEEEEecCCchHHH
Q psy11160 150 KIVVEKSTVPVRAA 163 (598)
Q Consensus 150 ~ivv~~STv~~~~~ 163 (598)
++++..||..|-+.
T Consensus 115 ~il~snTS~~~~~~ 128 (286)
T PRK07819 115 AVLASNTSSIPIMK 128 (286)
T ss_pred cEEEECCCCCCHHH
Confidence 98887766655443
No 52
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.37 E-value=6.6e-11 Score=123.35 Aligned_cols=210 Identities=14% Similarity=0.208 Sum_probs=130.4
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
..++||+|||+|.||.++|..|+. .|++|++||+++++++...+... ..
T Consensus 2 ~~~~~V~vIG~G~mG~~iA~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~~~~----~~ 50 (295)
T PLN02545 2 AEIKKVGVVGAGQMGSGIAQLAAA---------------------------AGMDVWLLDSDPAALSRGLDSIS----SS 50 (295)
T ss_pred CCcCEEEEECCCHHHHHHHHHHHh---------------------------cCCeEEEEeCCHHHHHHHHHHHH----HH
Confidence 346789999999999999999999 89999999999998764321100 00
Q ss_pred hHHHHhh---------hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 83 LDEVVKK---------TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 83 ~~~~~~~---------~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
++.+.+. .....+.++++++ ++++||+||+||+.+. .....++.++.+.++++++|+
T Consensus 51 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~aD~Vieav~e~~-------------~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 51 LARLVKKGKMSQEEADATLGRIRCTTNLE-ELRDADFIIEAIVESE-------------DLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred HHHHHHcCCCCHHHHHHHHhceEeeCCHH-HhCCCCEEEEcCccCH-------------HHHHHHHHHHHhhCCCCcEEE
Confidence 0011100 0013466777775 7899999999997643 234456777888899998875
Q ss_pred -EecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCC
Q psy11160 154 -EKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTN 232 (598)
Q Consensus 154 -~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g 232 (598)
+.||+++.+..+... ... .-
T Consensus 117 s~tS~i~~~~l~~~~~----------------------------------------------------------~~~-r~ 137 (295)
T PLN02545 117 SNTSSISITRLASATQ----------------------------------------------------------RPQ-QV 137 (295)
T ss_pred ECCCCCCHHHHHhhcC----------------------------------------------------------CCc-ce
Confidence 788887765432211 000 00
Q ss_pred ceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHH
Q psy11160 233 VQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRI 312 (598)
Q Consensus 233 ~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~i 312 (598)
...++...|... + + ..++++... .+++++.++++++.++. .++++++.. + .++++++.
T Consensus 138 ~g~h~~~pp~~~-~------l----veiv~g~~t--~~e~~~~~~~ll~~lG~-~~~~~~d~~-g---~i~nri~~---- 195 (295)
T PLN02545 138 IGMHFMNPPPIM-K------L----VEIIRGADT--SDEVFDATKALAERFGK-TVVCSQDYP-G---FIVNRILM---- 195 (295)
T ss_pred EEEeccCCcccC-c------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eeEEecCcc-c---HHHHHHHH----
Confidence 112233333221 1 1 123444321 24678999999999874 455554421 1 34444433
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHcC
Q psy11160 313 SSINSLSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 313 a~~nE~~~la~~~gid~~ev~~~l~~ 338 (598)
.++||...+.+.--.+++++=.++..
T Consensus 196 ~~~~ea~~~~~~gv~~~~~iD~~~~~ 221 (295)
T PLN02545 196 PMINEAFYALYTGVASKEDIDTGMKL 221 (295)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 46789999888877888777776643
No 53
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.36 E-value=3.7e-11 Score=124.29 Aligned_cols=187 Identities=15% Similarity=0.116 Sum_probs=123.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.++|..|++ +|++|++||++++..+.+.+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~---------------------------~g~~V~~~d~~~~~~~~a~~~g~--------- 44 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRS---------------------------LGHTVYGVSRRESTCERAIERGL--------- 44 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHCCC---------
Confidence 489999999999999999999 89999999999999887764210
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
....+++. +++++||+||+|+|.+ .+.++++.+.+.++++++|++.+++.+...+.
T Consensus 45 --------~~~~~~~~-~~~~~aDlVilavp~~---------------~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~ 100 (279)
T PRK07417 45 --------VDEASTDL-SLLKDCDLVILALPIG---------------LLLPPSEQLIPALPPEAIVTDVGSVKAPIVEA 100 (279)
T ss_pred --------cccccCCH-hHhcCCCEEEEcCCHH---------------HHHHHHHHHHHhCCCCcEEEeCcchHHHHHHH
Confidence 01233444 4688999999998753 45667888999999999999999988766543
Q ss_pred HHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccC
Q psy11160 166 IMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245 (598)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~ 245 (598)
+... .. .| +..-|-++.
T Consensus 101 ~~~~-------------------------------~~-------------------------------~~-v~~HPm~G~ 117 (279)
T PRK07417 101 WEKL-------------------------------HP-------------------------------RF-VGSHPMAGT 117 (279)
T ss_pred HHHh-------------------------------hC-------------------------------Cc-eeeCCcCCC
Confidence 3220 00 00 111122221
Q ss_pred c----Cchhhh-cCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 246 E----GTAMTD-LFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSL 318 (598)
Q Consensus 246 ~----G~a~~~-~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~ 318 (598)
+ ..+..+ +.....+++-+.. ..+++++.++++++.++. .++.++..+..+.++++++....+..++++.+
T Consensus 118 ~~~g~~~a~~~lf~g~~~~l~p~~~--~~~~~~~~v~~l~~~lG~-~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~ 192 (279)
T PRK07417 118 AESGVEAGQRGLFKNRPWVLTPTEN--TDLNALAIVEELAVSLGS-KIYTADPEEHDRAVALISHLPVMVSAALIQTC 192 (279)
T ss_pred CcchHHHhhHHHhCCCcEEEccCCC--CCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 1 111111 2222333332221 123678889999999873 45567778899999999988776665554433
No 54
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.36 E-value=7.7e-11 Score=122.68 Aligned_cols=206 Identities=14% Similarity=0.150 Sum_probs=130.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC---------
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK--------- 75 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~--------- 75 (598)
++||+|||+|.||.++|..|+. +|++|++||+++++++.+.+..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~---------------------------~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~ 56 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCAL---------------------------AGYDVLLNDVSADRLEAGLATINGNLARQVA 56 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999 8999999999999887643210
Q ss_pred -CCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE-
Q psy11160 76 -LPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV- 153 (598)
Q Consensus 76 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv- 153 (598)
..+.+...+.. ..+++.+++++ ++++||+||+|||.+. .....++++|.+.++++++++
T Consensus 57 ~g~~~~~~~~~~-----~~~i~~~~~~~-~~~~aD~Vieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 57 KGKISEEARAAA-----LARISTATDLE-DLADCDLVIEAATEDE-------------TVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred cCCCCHHHHHHH-----HhCeEeeCCHH-HhcCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEE
Confidence 01111111111 13578888885 6899999999997643 133456778889999999886
Q ss_pred EecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCc
Q psy11160 154 EKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNV 233 (598)
Q Consensus 154 ~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~ 233 (598)
.+||+++. .++.. +.... .=.
T Consensus 118 ~ts~~~~s---~la~~-------------------------------------------------------~~~~~-r~~ 138 (292)
T PRK07530 118 NTSSISIT---RLASA-------------------------------------------------------TDRPE-RFI 138 (292)
T ss_pred cCCCCCHH---HHHhh-------------------------------------------------------cCCcc-cEE
Confidence 67777653 23320 10000 000
Q ss_pred eeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHH
Q psy11160 234 QFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRIS 313 (598)
Q Consensus 234 ~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia 313 (598)
..++.. |....++. + ++.|... .+++++.+.++++.++. .++++.+.. .+++++++. .
T Consensus 139 g~h~~~-p~~~~~~v--------e-i~~g~~t---~~~~~~~~~~~~~~~gk-~~v~~~d~p----g~i~nRl~~----~ 196 (292)
T PRK07530 139 GIHFMN-PVPVMKLV--------E-LIRGIAT---DEATFEAAKEFVTKLGK-TITVAEDFP----AFIVNRILL----P 196 (292)
T ss_pred EeeccC-CcccCceE--------E-EeCCCCC---CHHHHHHHHHHHHHcCC-eEEEecCcC----ChHHHHHHH----H
Confidence 122222 32222211 1 3333221 23688999999999874 556565433 677777665 4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHc
Q psy11160 314 SINSLSAVCEATGADVSEVAKAVG 337 (598)
Q Consensus 314 ~~nE~~~la~~~gid~~ev~~~l~ 337 (598)
+.||...+.+.--.++.++=+++.
T Consensus 197 ~~~ea~~~~~~g~~~~~~iD~~~~ 220 (292)
T PRK07530 197 MINEAIYTLYEGVGSVEAIDTAMK 220 (292)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Confidence 678888877774456777766664
No 55
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.33 E-value=2.1e-10 Score=118.44 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=128.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|.||.++|..|.+ .|+ +|++||+++++.+.+.+...
T Consensus 1 m~I~iIG~G~mG~sla~~l~~---------------------------~g~~~~v~~~d~~~~~~~~~~~~g~------- 46 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKE---------------------------KGLISKVYGYDHNELHLKKALELGL------- 46 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHh---------------------------cCCCCEEEEEcCCHHHHHHHHHCCC-------
Confidence 489999999999999999998 564 89999999999887653210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
...++++.++. +||+||+|||.. .+.++++++.+ ++++++|+..+|+.....
T Consensus 47 -----------~~~~~~~~~~~-~aD~Vilavp~~---------------~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~ 98 (275)
T PRK08507 47 -----------VDEIVSFEELK-KCDVIFLAIPVD---------------AIIEILPKLLD-IKENTTIIDLGSTKAKII 98 (275)
T ss_pred -----------CcccCCHHHHh-cCCEEEEeCcHH---------------HHHHHHHHHhc-cCCCCEEEECccchHHHH
Confidence 11233555544 599999998754 36667788888 889999998777655444
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC-Cc
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN-PE 242 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~-Pe 242 (598)
+.+.. .. .. .++.+ |.
T Consensus 99 ~~~~~-------------------------------~~-~~-------------------------------~~v~~hPm 115 (275)
T PRK08507 99 ESVPK-------------------------------HI-RK-------------------------------NFIAAHPM 115 (275)
T ss_pred HHHHH-------------------------------hc-CC-------------------------------CEEecCCc
Confidence 33221 00 00 01111 32
Q ss_pred ccC----cCchhhhcCC-CCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLS----EGTAMTDLFN-ADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINS 317 (598)
Q Consensus 243 ~~~----~G~a~~~~~~-p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE 317 (598)
.++ +..+..+++. -..+++++... .++.++.++++++.++. .++.++..+..+.+++++++-..+..++++-
T Consensus 116 aG~e~~Gp~~a~~~l~~g~~~il~~~~~~--~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~ 192 (275)
T PRK08507 116 AGTENSGPKAAIKGLYEGKVVVLCDVEKS--GEKHQERAKEIFSGLGM-RIVYMDAKEHDLHAAYISHLPHIISFALANT 192 (275)
T ss_pred CcCchhhHHhccHHHhCCCeEEEecCCCC--CHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 211 1122111111 11244443221 23578889999999973 5666777888999999999877544444332
Q ss_pred HHHHHHHcCCCHHHHHHHHcCCcc
Q psy11160 318 LSAVCEATGADVSEVAKAVGLDSR 341 (598)
Q Consensus 318 ~~~la~~~gid~~ev~~~l~~~~r 341 (598)
+ . .+.+..++.++....+|
T Consensus 193 ~---~--~~~~~~~~~~~~~~gfr 211 (275)
T PRK08507 193 V---L--KEEDERNIFDLAGGGFR 211 (275)
T ss_pred H---H--hcCChHHHHhhcccchh
Confidence 2 1 26677777777766554
No 56
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.32 E-value=1.3e-10 Score=123.57 Aligned_cols=218 Identities=15% Similarity=0.112 Sum_probs=139.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC-CCCC-
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP-IYEP- 81 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~-~~e~- 81 (598)
.+|||+|||+|.||+.+|..|++ +| +|++|.++++.++.+++...+ .+.+
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~---------------------------~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~ 57 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICAR---------------------------RG-PTLQWVRSAETADDINDNHRNSRYLGN 57 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH---------------------------CC-CEEEEeCCHHHHHHHHhcCCCcccCCC
Confidence 46899999999999999999999 77 689999999999999975432 2222
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE-EecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV-EKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv-~~STv~~ 160 (598)
+. ....++.+++|+.++++++|+||++||+. .++++++.|.+.++++++++ ..-.+..
T Consensus 58 ~~------~l~~~i~~t~d~~~a~~~aDlVilavps~---------------~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 58 DV------VLSDTLRATTDFAEAANCADVVVMGVPSH---------------GFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred Cc------ccCCCeEEECCHHHHHhcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 11 01245788999988899999999998753 58889999999998876544 3345555
Q ss_pred HHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC
Q psy11160 161 RAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240 (598)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~ 240 (598)
++.+.+.. .+++.+ .+..+.++..
T Consensus 117 ~t~~~~se-------------------------------------------------------~i~~~l-~~~~~~~l~G 140 (341)
T PRK12439 117 GTNMRMSQ-------------------------------------------------------IIEEVL-PGHPAGILAG 140 (341)
T ss_pred CCCCcHHH-------------------------------------------------------HHHHHc-CCCCeEEEEC
Confidence 44322221 222211 1122345666
Q ss_pred CcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEE-ecCchhHHHHHHHHHHHH-----------
Q psy11160 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHIL-TTNTWSSELSKLAANAFL----------- 308 (598)
Q Consensus 241 Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~-~~~~~~Ae~~Kl~~N~~~----------- 308 (598)
|.+..+. ....|..+++|+.+. +..+.++.+|..-. =++. ..+....|..|.+-|.+.
T Consensus 141 P~~a~ev----~~g~~t~~via~~~~----~~~~~v~~lf~~~~--~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~ 210 (341)
T PRK12439 141 PNIAREV----AEGYAAAAVLAMPDQ----HLATRLSPLFRTRR--FRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGI 210 (341)
T ss_pred CCHHHHH----HcCCCeEEEEEeCCH----HHHHHHHHHhCCCC--EEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6554321 112344456666542 45567777776421 1233 345666777777776554
Q ss_pred ------HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy11160 309 ------AQRISSINSLSAVCEATGADVSEVAKAV 336 (598)
Q Consensus 309 ------~~~ia~~nE~~~la~~~gid~~ev~~~l 336 (598)
+.....++|+..+++.+|.++..+..+.
T Consensus 211 g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~ 244 (341)
T PRK12439 211 GENTRAMVIARALREMTKLGVAMGGNPETFAGLA 244 (341)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCcccccccc
Confidence 3334556777777777777666665543
No 57
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.31 E-value=5.7e-10 Score=116.14 Aligned_cols=211 Identities=15% Similarity=0.121 Sum_probs=125.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++||+|||+|.||.++|..|+. .|++|++||+++++++...+....- .-+++
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~---------------------------~G~~V~l~d~~~~~l~~~~~~i~~~-~~~l~ 54 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFAR---------------------------TGYDVTIVDVSEEILKNAMELIESG-PYGLR 54 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHh---------------------------cCCeEEEEeCCHHHHHHHHHHHHhh-hhhHH
Confidence 5789999999999999999999 8999999999999987543210000 00111
Q ss_pred HHHhh---------hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 85 EVVKK---------TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 85 ~~~~~---------~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
.++.+ ....++.+++++ +++++||+||+|+|.+. ....++++++.+.++++++++ +
T Consensus 55 ~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~-------------~~k~~~~~~l~~~~~~~~il~-S 119 (291)
T PRK06035 55 NLVEKGKMSEDEAKAIMARIRTSTSY-ESLSDADFIVEAVPEKL-------------DLKRKVFAELERNVSPETIIA-S 119 (291)
T ss_pred HHHHcCCCCHHHHHHHHhCcEeeCCH-HHhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEE-E
Confidence 11110 011346778887 57899999999997653 234567778888888888765 3
Q ss_pred cCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCcee
Q psy11160 156 STVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 235 (598)
Q Consensus 156 STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~ 235 (598)
+|... ...+++. . +....+ =...
T Consensus 120 ~tsg~-~~~~la~-------------------------------~------------------------~~~~~r-~ig~ 142 (291)
T PRK06035 120 NTSGI-MIAEIAT-------------------------------A------------------------LERKDR-FIGM 142 (291)
T ss_pred cCCCC-CHHHHHh-------------------------------h------------------------cCCccc-EEEE
Confidence 33322 2222322 1 100000 0001
Q ss_pred eEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHH
Q psy11160 236 QILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSI 315 (598)
Q Consensus 236 ~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~ 315 (598)
+. +.|....++ .| ++.|... .+++++.+.++++.++. .++++++....-..|+..| ++
T Consensus 143 hf-~~P~~~~~~--------vE-v~~g~~T---~~e~~~~~~~~~~~lgk-~~v~v~d~pgfv~nRl~~~--------~~ 200 (291)
T PRK06035 143 HW-FNPAPVMKL--------IE-VVRAALT---SEETFNTTVELSKKIGK-IPIEVADVPGFFTTRFIEG--------WL 200 (291)
T ss_pred ec-CCCcccCcc--------EE-EeCCCCC---CHHHHHHHHHHHHHcCC-eEEEeCCCCCeeHHHHHHH--------HH
Confidence 11 122222211 12 3334332 34788999999999874 5666776655556666665 44
Q ss_pred HHHHHHHHHcCCCHHHHHHHHc
Q psy11160 316 NSLSAVCEATGADVSEVAKAVG 337 (598)
Q Consensus 316 nE~~~la~~~gid~~ev~~~l~ 337 (598)
||+..+.+.--++++++=+++.
T Consensus 201 ~ea~~~~~~g~a~~~~iD~~~~ 222 (291)
T PRK06035 201 LEAIRSFEIGIATIKDIDEMCK 222 (291)
T ss_pred HHHHHHHHcCCCCHHHHHHHHh
Confidence 6777777664467777766664
No 58
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.31 E-value=4.2e-10 Score=117.38 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=74.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||..+|..|++ +|++|+++++ +++++.+++....+.+++.+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~---------------------------~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~ 52 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLE---------------------------AGRDVTFLVR-PKRAKALRERGLVIRSDHGDA 52 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHH---------------------------CCCceEEEec-HHHHHHHHhCCeEEEeCCCeE
Confidence 589999999999999999999 8999999999 888888886433332222110
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
. .....+++..++...+|+||+|++++ .++++++.+.+.+.++++|+.
T Consensus 53 ~------~~~~~~~~~~~~~~~~d~vilavk~~---------------~~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 53 V------VPGPVITDPEELTGPFDLVILAVKAY---------------QLDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred E------ecceeecCHHHccCCCCEEEEEeccc---------------CHHHHHHHHHhhcCCCCEEEE
Confidence 0 01234566666668999999999875 267788888888888876664
No 59
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.30 E-value=4.2e-10 Score=123.56 Aligned_cols=205 Identities=17% Similarity=0.203 Sum_probs=132.4
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|+|+||| +|.||.++|..|.. .|++|++||+++++...+...
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~---------------------------~G~~V~v~~r~~~~~~~~a~~---------- 43 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKE---------------------------KGFEVIVTGRDPKKGKEVAKE---------- 43 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHH---------------------------CCCEEEEEECChHHHHHHHHH----------
Confidence 5899997 89999999999999 899999999998886554421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.+...+++..+++.+||+||+|+|.. .+.++++++.+.++++++|++.|++.+...+
T Consensus 44 --------~gv~~~~~~~e~~~~aDvVIlavp~~---------------~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~ 100 (437)
T PRK08655 44 --------LGVEYANDNIDAAKDADIVIISVPIN---------------VTEDVIKEVAPHVKEGSLLMDVTSVKERPVE 100 (437)
T ss_pred --------cCCeeccCHHHHhccCCEEEEecCHH---------------HHHHHHHHHHhhCCCCCEEEEcccccHHHHH
Confidence 12345677778899999999998653 4567788999999999999999988776665
Q ss_pred HHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEEC-Ccc
Q psy11160 165 SIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN-PEF 243 (598)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~-Pe~ 243 (598)
.+.. .+. .+ ..++.+ |.+
T Consensus 101 ~l~~-------------------------------------------------------~~~----~~--~~~V~~HPma 119 (437)
T PRK08655 101 AMEE-------------------------------------------------------YAP----EG--VEILPTHPMF 119 (437)
T ss_pred HHHH-------------------------------------------------------hcC----CC--CEEEEcCCCC
Confidence 4432 110 11 122332 544
Q ss_pred cCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 244 LSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCE 323 (598)
Q Consensus 244 ~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~ 323 (598)
+.....+. ....++..+.. ..+++++.++++++.++ .++...++. +.-+++.+......+.+...+.. ..
T Consensus 120 Gp~~~~~~---g~~~il~p~~~--~~~~~~~~v~~ll~~~G--~~v~~~~~e--~HD~~~a~vs~lph~~a~al~~~-l~ 189 (437)
T PRK08655 120 GPRTPSLK---GQVVILTPTEK--RSNPWFDKVKNFLEKEG--ARVIVTSPE--EHDRIMSVVQGLTHFAYISIAST-LK 189 (437)
T ss_pred CCCCcccC---CCEEEEecCCC--CCHHHHHHHHHHHHHcC--CEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 32111121 11234443331 12357788999999886 344444432 44555555555555555554444 36
Q ss_pred HcCCCHHHHHHHHcCCcc
Q psy11160 324 ATGADVSEVAKAVGLDSR 341 (598)
Q Consensus 324 ~~gid~~ev~~~l~~~~r 341 (598)
++|.+..+..++....+|
T Consensus 190 ~~g~~~~~~~~~a~~~fr 207 (437)
T PRK08655 190 RLGVDIKESRKFASPIYE 207 (437)
T ss_pred HcCCCHHHHHhhcChhhH
Confidence 679998887766654443
No 60
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.29 E-value=1.2e-11 Score=117.25 Aligned_cols=102 Identities=26% Similarity=0.421 Sum_probs=82.9
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCChHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGLDE 85 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~~~ 85 (598)
||+|||+|.+|.++|..|++ +|++|++|.++++.++.+++ +..+.+.|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~---------------------------~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~-- 51 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD---------------------------NGHEVTLWGRDEEQIEEINETRQNPKYLPGI-- 51 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH---------------------------CTEEEEEETSCHHHHHHHHHHTSETTTSTTS--
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------cCCEEEEEeccHHHHHHHHHhCCCCCCCCCc--
Confidence 79999999999999999999 89999999999999999996 3444444442
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
..+.++.+++|+++++++||+||++||+. .+++++++|.++++++++++..+
T Consensus 52 ----~l~~~i~~t~dl~~a~~~ad~IiiavPs~---------------~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 52 ----KLPENIKATTDLEEALEDADIIIIAVPSQ---------------AHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp ----BEETTEEEESSHHHHHTT-SEEEE-S-GG---------------GHHHHHHHHTTTSHTT-EEEETS
T ss_pred ----ccCcccccccCHHHHhCcccEEEecccHH---------------HHHHHHHHHhhccCCCCEEEEec
Confidence 12357899999999999999999998765 47889999999999999888644
No 61
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.28 E-value=3e-10 Score=116.41 Aligned_cols=96 Identities=14% Similarity=0.285 Sum_probs=75.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc----eEEEE-eCCHHHHHHHHcCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI----QVTVV-DKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~v~~~-d~~~~~~~~~~~~~~~~~e 80 (598)
|||+|||+|.||.+||..|.+ .|+ +|++| |+++++.+.+.+.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~---------------------------~g~~~~~~i~v~~~r~~~~~~~~~~~------ 47 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVA---------------------------SGVVPPSRISTADDSNPARRDVFQSL------ 47 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHH---------------------------CCCCCcceEEEEeCCCHHHHHHHHHc------
Confidence 689999999999999999999 677 89999 9999998876531
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe-cCCc
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK-STVP 159 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~-STv~ 159 (598)
++..++++.+++++||+||+|++ |. .++++++.+.+.++++++||.. ++++
T Consensus 48 -------------g~~~~~~~~e~~~~aDvVil~v~-~~--------------~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 48 -------------GVKTAASNTEVVKSSDVIILAVK-PQ--------------VVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred -------------CCEEeCChHHHHhcCCEEEEEEC-cH--------------HHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 24556777788899999999994 42 4777888888888888876632 4444
Q ss_pred hHH
Q psy11160 160 VRA 162 (598)
Q Consensus 160 ~~~ 162 (598)
..+
T Consensus 100 ~~~ 102 (266)
T PLN02688 100 LAD 102 (266)
T ss_pred HHH
Confidence 433
No 62
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.28 E-value=7.1e-10 Score=116.66 Aligned_cols=210 Identities=16% Similarity=0.164 Sum_probs=133.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+++|+|||+|.||..+|..|+. .|++|++||++++..+.+.+... ..++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~---------------------------aG~~V~l~D~~~~~~~~~~~~i~----~~~~ 55 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA---------------------------HGLDVVAWDPAPGAEAALRANVA----NAWP 55 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHH----HHHH
Confidence 5789999999999999999999 89999999999988765432100 0011
Q ss_pred HHHh-----hhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 85 EVVK-----KTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 85 ~~~~-----~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.+.+ .....++++++++++++++||+|+.|||... ++ =...+++|.+.+++++ |+.+||.+
T Consensus 56 ~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l-----------~v--K~~lf~~l~~~~~~~a-IlaSnTS~ 121 (321)
T PRK07066 56 ALERQGLAPGASPARLRFVATIEACVADADFIQESAPERE-----------AL--KLELHERISRAAKPDA-IIASSTSG 121 (321)
T ss_pred HHHHcCCChhhHHhhceecCCHHHHhcCCCEEEECCcCCH-----------HH--HHHHHHHHHHhCCCCe-EEEECCCc
Confidence 1110 0112467888999889999999999997643 22 2456688999999888 55566664
Q ss_pred hHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhc-CCceEEEeccccchhhhhHHHHHhhcccCCceeeEE
Q psy11160 160 VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIAT-DNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQIL 238 (598)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~-~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~ 238 (598)
.-.+ +++. .++ +..++ |. + -
T Consensus 122 l~~s-~la~-------------------------------~~~~p~R~~------------------------g~--H-f 142 (321)
T PRK07066 122 LLPT-DFYA-------------------------------RATHPERCV------------------------VG--H-P 142 (321)
T ss_pred cCHH-HHHH-------------------------------hcCCcccEE------------------------EE--e-c
Confidence 3222 2221 110 00000 00 1 1
Q ss_pred ECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEec--CchhHHHHHHHHHHHHHHHHHHHH
Q psy11160 239 SNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTT--NTWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 239 ~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~--~~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
++|....+ +. | |+.|... .+++++.+..+++.++. .++.+. .++ ++.| .+..+++|
T Consensus 143 fnP~~~~p------LV--E-Vv~g~~T---~~e~~~~~~~f~~~lGk-~pV~v~kd~pG------Fi~N---Rl~~a~~~ 200 (321)
T PRK07066 143 FNPVYLLP------LV--E-VLGGERT---APEAVDAAMGIYRALGM-RPLHVRKEVPG------FIAD---RLLEALWR 200 (321)
T ss_pred CCccccCc------eE--E-EeCCCCC---CHHHHHHHHHHHHHcCC-EeEecCCCCcc------HHHH---HHHHHHHH
Confidence 24433222 11 1 4444333 35788999999999874 455552 233 2333 34456889
Q ss_pred HHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 317 SLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 317 E~~~la~~~gid~~ev~~~l~~~~ 340 (598)
|+..+.+...++++++=+++....
T Consensus 201 EA~~lv~eGvas~edID~a~~~g~ 224 (321)
T PRK07066 201 EALHLVNEGVATTGEIDDAIRFGA 224 (321)
T ss_pred HHHHHHHhCCCCHHHHHHHHHhCC
Confidence 999999998899999888876554
No 63
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.28 E-value=4.2e-10 Score=116.42 Aligned_cols=102 Identities=19% Similarity=0.326 Sum_probs=79.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCH-HHHHHHHcCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSE-ERIRQWNSNKLPIY 79 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~-~~~~~~~~~~~~~~ 79 (598)
.|||+|||+|.||.+|+..|.+ +| ++|+++|+++ ++.+.+...
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~---------------------------~g~~~~~~v~v~~r~~~~~~~~l~~~----- 50 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLH---------------------------ANVVKGEQITVSNRSNETRLQELHQK----- 50 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHH---------------------------CCCCCcceEEEECCCCHHHHHHHHHh-----
Confidence 3699999999999999999998 44 8999999975 466766531
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe-cCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK-STV 158 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~-STv 158 (598)
.+.+.+.++.+++++||+||+||+.. .+.++++.+.+.++++++||.. +++
T Consensus 51 -------------~g~~~~~~~~e~~~~aDvVilav~p~---------------~~~~vl~~l~~~~~~~~liIs~~aGi 102 (279)
T PRK07679 51 -------------YGVKGTHNKKELLTDANILFLAMKPK---------------DVAEALIPFKEYIHNNQLIISLLAGV 102 (279)
T ss_pred -------------cCceEeCCHHHHHhcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 12345677777889999999999743 3566778888888888888875 999
Q ss_pred chHHHHHH
Q psy11160 159 PVRAAESI 166 (598)
Q Consensus 159 ~~~~~~~~ 166 (598)
++.+.+++
T Consensus 103 ~~~~l~~~ 110 (279)
T PRK07679 103 STHSIRNL 110 (279)
T ss_pred CHHHHHHH
Confidence 88876543
No 64
>PLN02712 arogenate dehydrogenase
Probab=99.27 E-value=1.3e-08 Score=116.87 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=72.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..|.+ .|++|++||++.... ...+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~---------------------------~G~~V~~~dr~~~~~-~A~~----------- 92 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLIS---------------------------QGHTVLAHSRSDHSL-AARS----------- 92 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHH-HHHH-----------
Confidence 4799999999999999999999 789999999986542 2221
Q ss_pred HHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHH-HHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIA-EIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~ivv~~STv~~~~ 162 (598)
-++..++++.+.+ .+||+||+|||.. .+.++++++. +.++++++|++.+++-...
T Consensus 93 --------~Gv~~~~d~~e~~~~~aDvViLavP~~---------------~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~ 149 (667)
T PLN02712 93 --------LGVSFFLDPHDLCERHPDVILLCTSII---------------STENVLKSLPLQRLKRNTLFVDVLSVKEFA 149 (667)
T ss_pred --------cCCEEeCCHHHHhhcCCCEEEEcCCHH---------------HHHHHHHhhhhhcCCCCeEEEECCCCcHHH
Confidence 1234466777644 5699999998632 4677777775 5688899999988776533
No 65
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=99.27 E-value=2.4e-12 Score=113.95 Aligned_cols=42 Identities=48% Similarity=0.771 Sum_probs=34.5
Q ss_pred EEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCCCCC
Q psy11160 553 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMS 594 (598)
Q Consensus 553 ~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~~~ 594 (598)
+|||+|||+||+|+|+||++.|++.|.++|++|.+|||++..
T Consensus 1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~ 42 (106)
T PF03720_consen 1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVSVYDPYVDE 42 (106)
T ss_dssp EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHH
T ss_pred CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEEEECCccCh
Confidence 699999999999999999999999999999999999999864
No 66
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.26 E-value=1.2e-09 Score=115.41 Aligned_cols=105 Identities=16% Similarity=0.258 Sum_probs=79.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-CCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-LPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-~~~~e~~~~ 84 (598)
|||+|||+|.||..+|..|++ +|++|++|+++++.++.+++.. ...+.++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~---------------------------~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~- 52 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSS---------------------------KKISVNLWGRNHTTFESINTKRKNLKYLPTC- 52 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHH---------------------------CCCeEEEEecCHHHHHHHHHcCCCcccCCCC-
Confidence 589999999999999999999 8999999999999999998642 22222221
Q ss_pred HHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH-HcCCCcEE-EEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAE-IATDNKIV-VEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~iv-v~~STv 158 (598)
....++++++++.+++ .++|+||++||.. .+.++++.+.+ .+.+++.| .....+
T Consensus 53 -----~~~~~i~~~~~~~~~~~~~~Dliiiavks~---------------~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 53 -----HLPDNISVKSAIDEVLSDNATCIILAVPTQ---------------QLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred -----cCCCCeEEeCCHHHHHhCCCCEEEEEeCHH---------------HHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 0123577888888776 5899999998754 57888899988 87777644 443334
No 67
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.26 E-value=1.7e-10 Score=123.27 Aligned_cols=227 Identities=14% Similarity=0.125 Sum_probs=142.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-----HHHHHHc-CCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-----RIRQWNS-NKLPI 78 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-----~~~~~~~-~~~~~ 78 (598)
.+||+|||.|.||+++|..|+++.- +..+ -||+|.+|.++++ .++.+|+ +.++.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~-------~~~~-------------~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ 70 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQ-------RNYI-------------FHNEVRMWVLEEIVEGEKLSDIINTKHENVK 70 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCC-------cccC-------------CCCeEEEEEecccccchHHHHHHHhcCCCcc
Confidence 4799999999999999999999100 0000 1489999999987 4888885 45666
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH--HcCCCcEEEEec
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAE--IATDNKIVVEKS 156 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~ivv~~S 156 (598)
|.|++. .+.++.+++|+.+++++||+||++||+. .++++++++.+ .++++.++|..+
T Consensus 71 ylp~~~------Lp~ni~~tsdl~eav~~aDiIvlAVPsq---------------~l~~vl~~l~~~~~l~~~~~iIS~a 129 (365)
T PTZ00345 71 YLPGIK------LPDNIVAVSDLKEAVEDADLLIFVIPHQ---------------FLESVLSQIKENNNLKKHARAISLT 129 (365)
T ss_pred cCCCCc------CCCceEEecCHHHHHhcCCEEEEEcChH---------------HHHHHHHHhccccccCCCCEEEEEe
Confidence 777763 2467999999999999999999999764 57888899888 777776666433
Q ss_pred C-CchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCcee
Q psy11160 157 T-VPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 235 (598)
Q Consensus 157 T-v~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~ 235 (598)
- +.+.+-+ ...+.+++++.+ +..+
T Consensus 130 KGIe~~t~~-----------------------------------------------------~~~~sevi~e~l--~~~~ 154 (365)
T PTZ00345 130 KGIIVENGK-----------------------------------------------------PVLCSDVIEEEL--GIPC 154 (365)
T ss_pred CCcccCCCC-----------------------------------------------------cccHHHHHHHHh--CCCe
Confidence 2 2211110 000112233222 1235
Q ss_pred eEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEec-Cch-----------------hH
Q psy11160 236 QILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTT-NTW-----------------SS 297 (598)
Q Consensus 236 ~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~-~~~-----------------~A 297 (598)
.+++.|-+..+ - ....|..+++++.+. +..+.++.+|..= .=+++.. +.. .+
T Consensus 155 ~~LsGPs~A~E--v--a~~~pt~~vias~~~----~~a~~~~~lf~~~--~frvy~s~Dv~GvEl~galKNviAIa~Gi~ 224 (365)
T PTZ00345 155 CALSGANVAND--V--AREEFSEATIGCEDK----DDALIWQRLFDRP--YFKINCVPDVIGVEVCGALKNIIALAAGFC 224 (365)
T ss_pred EEEECCCHHHH--H--HcCCCcEEEEEeCCH----HHHHHHHHHhCCC--cEEEEEcCCcccchhhHHHHHHHHHHHHHH
Confidence 66778866432 1 123466677777653 4556667776521 0122221 221 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHc
Q psy11160 298 ELSKLAANAFLAQRISSINSLSAVCEATGA--DVSEVAKAVG 337 (598)
Q Consensus 298 e~~Kl~~N~~~~~~ia~~nE~~~la~~~gi--d~~ev~~~l~ 337 (598)
+-+++-.|+-.+..-..++|+..+++.+|. +...+..+.+
T Consensus 225 dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG 266 (365)
T PTZ00345 225 DGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCG 266 (365)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccch
Confidence 334455677777777788899999998864 6666665443
No 68
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.24 E-value=2.2e-10 Score=121.55 Aligned_cols=101 Identities=16% Similarity=0.241 Sum_probs=83.4
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--------ceEEEEeC-----CHHHHHHHHc
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--------IQVTVVDK-----SEERIRQWNS 73 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~v~~~d~-----~~~~~~~~~~ 73 (598)
||+|||+|.||.++|..|++ +| ++|++|.+ +++..+.+++
T Consensus 1 kI~VIGaG~wGtALA~~la~---------------------------ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~ 53 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE---------------------------NARALPELFEESVRMWVFEEEIEGRNLTEIINT 53 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------cCCcccccCCceEEEEEeccccCCHHHHHHHHh
Confidence 69999999999999999999 67 99999999 7788888886
Q ss_pred CC-CCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE
Q psy11160 74 NK-LPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV 152 (598)
Q Consensus 74 ~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv 152 (598)
.. .+.|.|++. .+.++++++|+++++++||+||++||+. .++++++.+.+++++++++
T Consensus 54 ~~~n~~ylpgi~------Lp~~i~at~dl~eal~~ADiIIlAVPs~---------------~i~~vl~~l~~~l~~~~~i 112 (342)
T TIGR03376 54 THENVKYLPGIK------LPANLVAVPDLVEAAKGADILVFVIPHQ---------------FLEGICKQLKGHVKPNARA 112 (342)
T ss_pred cCCCccccCCCc------CCCCeEEECCHHHHHhcCCEEEEECChH---------------HHHHHHHHHHhhcCCCCEE
Confidence 43 455556642 2357899999999999999999998764 5888899999999888877
Q ss_pred EEe
Q psy11160 153 VEK 155 (598)
Q Consensus 153 v~~ 155 (598)
|..
T Consensus 113 Vs~ 115 (342)
T TIGR03376 113 ISC 115 (342)
T ss_pred EEE
Confidence 653
No 69
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.22 E-value=1.6e-09 Score=112.32 Aligned_cols=110 Identities=25% Similarity=0.324 Sum_probs=77.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++||+|||+|+||.++|..|+. .|++|+++|+++++++...+.. +..++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~---------------------------~g~~V~~~d~~~~~~~~~~~~i----~~~l~ 51 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAV---------------------------AGYDVVMVDISDAAVDRGLATI----TKSLD 51 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHH---------------------------CCCceEEEeCCHHHHHHHHHHH----HHHHH
Confidence 4689999999999999999999 8999999999999986422100 00111
Q ss_pred HHHhh---------hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 85 EVVKK---------TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 85 ~~~~~---------~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
.+.+. ....+++++++++ .+++||+||+|+|... ..-.++++.|.+.++++++| .+
T Consensus 52 ~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~aDlVi~av~e~~-------------~~k~~~~~~l~~~~~~~~il-~s 116 (282)
T PRK05808 52 RLVKKGKMTEADKEAALARITGTTDLD-DLKDADLVIEAATENM-------------DLKKKIFAQLDEIAKPEAIL-AT 116 (282)
T ss_pred HHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeeeecccccH-------------HHHHHHHHHHHhhCCCCcEE-EE
Confidence 11110 0113678888986 5899999999986432 23357888899999999887 33
Q ss_pred cCCch
Q psy11160 156 STVPV 160 (598)
Q Consensus 156 STv~~ 160 (598)
+|...
T Consensus 117 ~ts~~ 121 (282)
T PRK05808 117 NTSSL 121 (282)
T ss_pred CCCCC
Confidence 44433
No 70
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=4.3e-10 Score=117.51 Aligned_cols=207 Identities=15% Similarity=0.176 Sum_probs=149.2
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+.|++||||.||..+|.++++ +|+.|.+|+|+.++.+.+-++...
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~---------------------------~G~~VavyNRt~~ktd~f~~~~~~-------- 48 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIAD---------------------------HGYTVAVYNRTTEKTDEFLAERAK-------- 48 (473)
T ss_pred cceeeEehhhhhHHHHHHHHh---------------------------cCceEEEEeCCHHHHHHHHHhCcc--------
Confidence 689999999999999999999 899999999999999987643210
Q ss_pred HHhhhcCCceEEecCHHH---HhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC-chH
Q psy11160 86 VVKKTRDVNLFFSTDIKS---AIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV-PVR 161 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~---~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv-~~~ 161 (598)
.+++..+.++++ .++..--|+++|.... .|...++++.+++.++.|+++-.-. .+.
T Consensus 49 ------~k~i~~~~sieefV~~Le~PRkI~lMVkAG~--------------~VD~~I~~L~p~Le~gDIiIDGGNs~y~D 108 (473)
T COG0362 49 ------GKNIVPAYSIEEFVASLEKPRKILLMVKAGT--------------PVDAVIEQLLPLLEKGDIIIDGGNSHYKD 108 (473)
T ss_pred ------CCCccccCcHHHHHHHhcCCceEEEEEecCC--------------cHHHHHHHHHhhcCCCCEEEeCCCcCCch
Confidence 012333333332 4566778889885431 4677889999999999999987544 344
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
|.|+.. .|.+ .|. .++..-
T Consensus 109 T~RR~~--------------------------------------------------------eL~~---~Gi--~FvG~G 127 (473)
T COG0362 109 TIRRNK--------------------------------------------------------ELSE---KGI--LFVGMG 127 (473)
T ss_pred HHHHHH--------------------------------------------------------HHHh---cCC--eEEecc
Confidence 433221 2333 232 223322
Q ss_pred cccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccC-----CceEEecCchhHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIP-----RKHILTTNTWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~-----~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
+.+ | .+++++=|.+|+||.. ++.+.+.|+|+.+.. +...++|..+++..+|.++|-.-..-+..+.
T Consensus 128 VSG--G--EeGA~~GPSiMpGG~~-----eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIa 198 (473)
T COG0362 128 VSG--G--EEGARHGPSIMPGGQK-----EAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIA 198 (473)
T ss_pred ccc--c--ccccccCCCcCCCCCH-----HHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHH
Confidence 221 2 1334443459999976 688999999988752 1234578889999999999999999999999
Q ss_pred HHHHHHHH-cCCCHHHHHHHHc
Q psy11160 317 SLSAVCEA-TGADVSEVAKAVG 337 (598)
Q Consensus 317 E~~~la~~-~gid~~ev~~~l~ 337 (598)
|...+.+. +|+...|+.++..
T Consensus 199 E~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 199 EAYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred HHHHHHHHhcCCCHHHHHHHHH
Confidence 99998877 8999999988886
No 71
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.21 E-value=6.6e-10 Score=119.69 Aligned_cols=182 Identities=11% Similarity=0.194 Sum_probs=123.6
Q ss_pred CCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.+++|+||| +|.||.++|..|.. .|++|++||++..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~---------------------------~G~~V~~~d~~~~---------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTL---------------------------SGYQVRILEQDDW---------------- 133 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHH---------------------------CCCeEEEeCCCcc----------------
Confidence 357899998 99999999999999 8999999998521
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+++.+++++||+||+|+|.. ...++++.+.+ ++++++|++.|++.+..
T Consensus 134 ----------------~~~~~~~~~aDlVilavP~~---------------~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~ 181 (374)
T PRK11199 134 ----------------DRAEDILADAGMVIVSVPIH---------------LTEEVIARLPP-LPEDCILVDLTSVKNAP 181 (374)
T ss_pred ----------------hhHHHHHhcCCEEEEeCcHH---------------HHHHHHHHHhC-CCCCcEEEECCCccHHH
Confidence 12345678999999998654 34666778888 89999999999987766
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
.+.+... + .+ . .+..-|-
T Consensus 182 ~~~~~~~-------------------------------------------------------~-----~~-~-fvg~HPm 199 (374)
T PRK11199 182 LQAMLAA-------------------------------------------------------H-----SG-P-VLGLHPM 199 (374)
T ss_pred HHHHHHh-------------------------------------------------------C-----CC-C-EEeeCCC
Confidence 5444320 0 00 0 1223444
Q ss_pred ccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11160 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVC 322 (598)
Q Consensus 243 ~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~nE~~~la 322 (598)
++.+-..+.+ ...++.++.+. ++++.++++++.++. .++.++..+..+++++++.+ ..+....++..++
T Consensus 200 ~G~~~~~~~~---~~vv~~~~~~~----~~~~~~~~l~~~lG~-~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~ 268 (374)
T PRK11199 200 FGPDVGSLAK---QVVVVCDGRQP----EAYQWLLEQIQVWGA-RLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLA 268 (374)
T ss_pred CCCCCcccCC---CEEEEcCCCCc----hHHHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4332212221 11243344332 577888999999873 45556667889999999844 4555556666666
Q ss_pred HHcCCCHHHHHH
Q psy11160 323 EATGADVSEVAK 334 (598)
Q Consensus 323 ~~~gid~~ev~~ 334 (598)
+ .+.|..++.+
T Consensus 269 ~-~~~~~~~~~~ 279 (374)
T PRK11199 269 K-ENVDLEQLLA 279 (374)
T ss_pred H-cCCCHHHHHH
Confidence 6 7888877755
No 72
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.16 E-value=6.3e-10 Score=114.84 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=84.7
Q ss_pred ceEEEECCC--------------------hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAG--------------------YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G--------------------~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|||.|.|+| |-|.+||..|++ +||+|++||+++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlk---------------------------AGheV~V~Drnr 53 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAM---------------------------AGHDVVLAEPNR 53 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHH---------------------------CCCEEEEEeCCh
Confidence 689999998 458999999999 899999999998
Q ss_pred HHHH-----HHHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH
Q psy11160 66 ERIR-----QWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR 140 (598)
Q Consensus 66 ~~~~-----~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~ 140 (598)
++.+ .+.+ .+...++++.+++++||+||+|+|++. .++++++
T Consensus 54 sa~e~e~~e~Lae-------------------aGA~~AaS~aEAAa~ADVVIL~LPd~a--------------aV~eVl~ 100 (341)
T TIGR01724 54 EFMSDDLWKKVED-------------------AGVKVVSDDKEAAKHGEIHVLFTPFGK--------------GTFSIAR 100 (341)
T ss_pred hhhhhhhhHHHHH-------------------CCCeecCCHHHHHhCCCEEEEecCCHH--------------HHHHHHH
Confidence 7653 2332 234567788899999999999998653 4667778
Q ss_pred HHHHHcCCCcEEEEecCCchHHHHHHHH
Q psy11160 141 MIAEIATDNKIVVEKSTVPVRAAESIMN 168 (598)
Q Consensus 141 ~i~~~~~~~~ivv~~STv~~~~~~~~~~ 168 (598)
.+.+.++++++||++||++|.+...+..
T Consensus 101 GLaa~L~~GaIVID~STIsP~t~~~~~e 128 (341)
T TIGR01724 101 TIIEHVPENAVICNTCTVSPVVLYYSLE 128 (341)
T ss_pred HHHhcCCCCCEEEECCCCCHHHHHHHHH
Confidence 8999999999999999999999876654
No 73
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.15 E-value=4.2e-09 Score=108.00 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=70.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC---ceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN---IQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+|+|+|||+|.||..++..|.+ .| ++|.+||+++++.+.+....
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~---------------------------~g~~~~~v~v~~r~~~~~~~~~~~~------ 48 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLA---------------------------SGVPAKDIIVSDPSPEKRAALAEEY------ 48 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHh---------------------------CCCCcceEEEEcCCHHHHHHHHHhc------
Confidence 4689999999999999999998 66 78999999999988776421
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
++..+.+..+.+.++|+||+|+|.. .+.++++.+.+.+ +..+|-..+.++
T Consensus 49 ------------g~~~~~~~~~~~~~advVil~v~~~---------------~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 49 ------------GVRAATDNQEAAQEADVVVLAVKPQ---------------VMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ------------CCeecCChHHHHhcCCEEEEEcCHH---------------HHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 1334567777788999999998643 4777888888776 333444444443
No 74
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.11 E-value=2.1e-08 Score=104.38 Aligned_cols=98 Identities=24% Similarity=0.341 Sum_probs=73.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||+.+|..|++ .|++|+++++++++.+.+++....+ +.+ +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~g~~~-~~~--~ 50 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQ---------------------------AGHDVTLVARRGAHLDALNENGLRL-EDG--E 50 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEECChHHHHHHHHcCCcc-cCC--c
Confidence 589999999999999999999 8999999999999998888643322 100 0
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
.......+++..+ ++.+|+||+|++++ .++++++.+.+.+.++++||.
T Consensus 51 -----~~~~~~~~~~~~~-~~~~d~vila~k~~---------------~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 51 -----ITVPVLAADDPAE-LGPQDLVILAVKAY---------------QLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred -----eeecccCCCChhH-cCCCCEEEEecccc---------------cHHHHHHHHhhhcCCCCEEEE
Confidence 0012234556654 48999999998754 267788889988888766653
No 75
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.05 E-value=1.5e-08 Score=104.62 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=70.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
+||+|||+|.||.+|+..|.+ .| .+|+++|+++++.+.+.+.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~---------------------------~g~~~~~~I~v~~r~~~~~~~l~~~------- 48 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN---------------------------KNIVSPDQIICSDLNVSNLKNASDK------- 48 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH---------------------------CCCCCCceEEEECCCHHHHHHHHHh-------
Confidence 589999999999999999998 34 4899999999998876531
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
.+...+++..+.+++||+||+||+ |. .++++++.+.+.++++++||
T Consensus 49 -----------~g~~~~~~~~e~~~~aDiIiLavk-P~--------------~~~~vl~~l~~~~~~~~lvI 94 (272)
T PRK12491 49 -----------YGITITTNNNEVANSADILILSIK-PD--------------LYSSVINQIKDQIKNDVIVV 94 (272)
T ss_pred -----------cCcEEeCCcHHHHhhCCEEEEEeC-hH--------------HHHHHHHHHHHhhcCCcEEE
Confidence 013456677778899999999997 42 47888888888888887665
No 76
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.02 E-value=1.3e-08 Score=104.17 Aligned_cols=98 Identities=12% Similarity=0.269 Sum_probs=69.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc---eEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI---QVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
|+|+|||+|.||.+++..|.+ .|+ ++.++++++++.+.+.+..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~---------------------------~g~~~~~i~v~~r~~~~~~~l~~~~------- 46 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLT---------------------------SPADVSEIIVSPRNAQIAARLAERF------- 46 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHh---------------------------CCCChheEEEECCCHHHHHHHHHHc-------
Confidence 489999999999999999998 443 5689999999988776421
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+...+.++.+++++||+||+|+| |. .+.++++.+. +.++++||. ++..-+
T Consensus 47 ----------~~~~~~~~~~~~~~~aDvVilav~-p~--------------~~~~vl~~l~--~~~~~~vis--~~ag~~ 97 (258)
T PRK06476 47 ----------PKVRIAKDNQAVVDRSDVVFLAVR-PQ--------------IAEEVLRALR--FRPGQTVIS--VIAATD 97 (258)
T ss_pred ----------CCceEeCCHHHHHHhCCEEEEEeC-HH--------------HHHHHHHHhc--cCCCCEEEE--ECCCCC
Confidence 123456778878899999999987 42 3566666552 456777764 444444
Q ss_pred HHHH
Q psy11160 163 AESI 166 (598)
Q Consensus 163 ~~~~ 166 (598)
.+.+
T Consensus 98 ~~~l 101 (258)
T PRK06476 98 RAAL 101 (258)
T ss_pred HHHH
Confidence 4333
No 77
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.97 E-value=1.9e-08 Score=104.58 Aligned_cols=213 Identities=19% Similarity=0.230 Sum_probs=133.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC----CCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK----LPIY 79 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~----~~~~ 79 (598)
.++||+|||+|.||..+|..+|. .|++|+++|++++.++...... ....
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~---------------------------~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~ 54 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFAL---------------------------AGYDVVLKDISPEALERALAYIEKNLEKLV 54 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhh---------------------------cCCceEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999 8899999999988776544211 0001
Q ss_pred CCC-hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecC
Q psy11160 80 EPG-LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKST 157 (598)
Q Consensus 80 e~~-~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~ST 157 (598)
+.| +.+.-....-.+++.++++. ++++||+||-+|+.. ++.=+++++++-+++++++|+ -+.||
T Consensus 55 ~~g~l~~~~~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~-------------levK~~vf~~l~~~~~~~aIlASNTSs 120 (307)
T COG1250 55 EKGKLTEEEADAALARITPTTDLA-ALKDADLVIEAVVED-------------LELKKQVFAELEALAKPDAILASNTSS 120 (307)
T ss_pred hcCCCChhhHHHHHhhccccCchh-HhccCCEEEEecccc-------------HHHHHHHHHHHHhhcCCCcEEeeccCC
Confidence 111 11111111124678888887 899999999999653 333467889999999999988 66677
Q ss_pred CchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeE
Q psy11160 158 VPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQI 237 (598)
Q Consensus 158 v~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l 237 (598)
+++....+-.. +| + ++ .|. |
T Consensus 121 l~it~ia~~~~---------------------------------rp---------------e---r~------iG~--H- 140 (307)
T COG1250 121 LSITELAEALK---------------------------------RP---------------E---RF------IGL--H- 140 (307)
T ss_pred CCHHHHHHHhC---------------------------------Cc---------------h---hE------EEE--e-
Confidence 77744311100 00 0 00 011 1
Q ss_pred EECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHHHHHHHH
Q psy11160 238 LSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 238 ~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
-+||....+ +. -|+.|-.. .+++++.+..+...+++ .++...+ ++ ++.| .+...+.+
T Consensus 141 FfNP~~~m~------LV---EvI~g~~T---~~e~~~~~~~~~~~igK-~~vv~~D~pG------Fi~N---Ril~~~~~ 198 (307)
T COG1250 141 FFNPVPLMP------LV---EVIRGEKT---SDETVERVVEFAKKIGK-TPVVVKDVPG------FIVN---RLLAALLN 198 (307)
T ss_pred ccCCCCcce------eE---EEecCCCC---CHHHHHHHHHHHHHcCC-CCEeecCCCc------eehH---hHHHHHHH
Confidence 124433221 11 14344333 35788999999999874 3343332 33 2333 33446778
Q ss_pred HHHHHHHHcCCCHHHHHHHHcCC
Q psy11160 317 SLSAVCEATGADVSEVAKAVGLD 339 (598)
Q Consensus 317 E~~~la~~~gid~~ev~~~l~~~ 339 (598)
|+..+.+.-.++++++=+++...
T Consensus 199 eA~~l~~eGva~~e~ID~~~~~~ 221 (307)
T COG1250 199 EAIRLLEEGVATPEEIDAAMRQG 221 (307)
T ss_pred HHHHHHHhCCCCHHHHHHHHHhc
Confidence 99988888889999888888653
No 78
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.97 E-value=3.5e-09 Score=91.37 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=69.6
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC---ceEEEE-eCCHHHHHHHHcCCCCCCCCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN---IQVTVV-DKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~v~~~-d~~~~~~~~~~~~~~~~~e~~ 82 (598)
||+|||+|.||..++..|.. .| ++|+++ ++++++.+.+.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~---------------------------~g~~~~~v~~~~~r~~~~~~~~~~~~------- 46 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLA---------------------------SGIKPHEVIIVSSRSPEKAAELAKEY------- 46 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHH---------------------------TTS-GGEEEEEEESSHHHHHHHHHHC-------
T ss_pred CEEEECCCHHHHHHHHHHHH---------------------------CCCCceeEEeeccCcHHHHHHHHHhh-------
Confidence 79999999999999999999 77 899955 99999999987421
Q ss_pred hHHHHhhhcCCceEEec-CHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 83 LDEVVKKTRDVNLFFST-DIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
...++. +..+++++||+||+|||.. .+.++++++ +...+++++|.
T Consensus 47 -----------~~~~~~~~~~~~~~~advvilav~p~---------------~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 47 -----------GVQATADDNEEAAQEADVVILAVKPQ---------------QLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp -----------TTEEESEEHHHHHHHTSEEEE-S-GG---------------GHHHHHHHH-HHHHTTSEEEE
T ss_pred -----------ccccccCChHHhhccCCEEEEEECHH---------------HHHHHHHHH-hhccCCCEEEE
Confidence 123444 7888999999999999643 367788888 77888898884
No 79
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.97 E-value=1.9e-07 Score=108.69 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=83.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC---------
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN--------- 74 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~--------- 74 (598)
.+.+|+|||+|.||..+|..++. +|++|+++|++++.++.....
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~---------------------------~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~ 364 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSAS---------------------------KGVPVIMKDINQKALDLGMTEAAKLLNKQV 364 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999 899999999999987642211
Q ss_pred -CCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-
Q psy11160 75 -KLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV- 152 (598)
Q Consensus 75 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv- 152 (598)
...+.+...+.. ..+++.++|+. ++++||+||-+||.. ++.=.+++.++.+.+++++|+
T Consensus 365 ~~g~~~~~~~~~~-----~~~i~~~~~~~-~~~~aDlViEav~E~-------------l~~K~~vf~~l~~~~~~~~ila 425 (715)
T PRK11730 365 ERGKIDGAKMAGV-----LSSIRPTLDYA-GFERVDVVVEAVVEN-------------PKVKAAVLAEVEQKVREDTILA 425 (715)
T ss_pred HcCCCChhhHHHH-----HhCeEEeCCHH-HhcCCCEEEecccCc-------------HHHHHHHHHHHHhhCCCCcEEE
Confidence 001111112222 25689999995 789999999999653 333467889999999999887
Q ss_pred EEecCCchHH
Q psy11160 153 VEKSTVPVRA 162 (598)
Q Consensus 153 v~~STv~~~~ 162 (598)
.++||.++..
T Consensus 426 sNTSsl~i~~ 435 (715)
T PRK11730 426 SNTSTISISL 435 (715)
T ss_pred EcCCCCCHHH
Confidence 5566666644
No 80
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.96 E-value=1.6e-07 Score=98.44 Aligned_cols=102 Identities=21% Similarity=0.219 Sum_probs=78.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+++|+|||+|.||.++|..|++ .| ++|++||+++++.+.+.+-..
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~---------------------------~g~~~~V~~~dr~~~~~~~a~~~g~------ 52 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRR---------------------------LGLAGEIVGADRSAETRARARELGL------ 52 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHh---------------------------cCCCcEEEEEECCHHHHHHHHhCCC------
Confidence 4799999999999999999998 56 489999999998887664210
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
....+.++.+++++||+||+|+|.+ ...++++.+.+.++++.+|++.+++....
T Consensus 53 -----------~~~~~~~~~~~~~~aDvViiavp~~---------------~~~~v~~~l~~~l~~~~iv~dvgs~k~~~ 106 (307)
T PRK07502 53 -----------GDRVTTSAAEAVKGADLVILCVPVG---------------ASGAVAAEIAPHLKPGAIVTDVGSVKASV 106 (307)
T ss_pred -----------CceecCCHHHHhcCCCEEEECCCHH---------------HHHHHHHHHHhhCCCCCEEEeCccchHHH
Confidence 1123456667889999999998754 34666778888889999998887776555
Q ss_pred HHH
Q psy11160 163 AES 165 (598)
Q Consensus 163 ~~~ 165 (598)
.+.
T Consensus 107 ~~~ 109 (307)
T PRK07502 107 IAA 109 (307)
T ss_pred HHH
Confidence 443
No 81
>PRK07680 late competence protein ComER; Validated
Probab=98.94 E-value=8.2e-08 Score=99.04 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=73.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
|+|+|||+|.||..++..|.+ .| .+|++||+++++.+.+.+..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~---------------------------~g~~~~~~v~v~~r~~~~~~~~~~~~------ 47 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLE---------------------------SGAVKPSQLTITNRTPAKAYHIKERY------ 47 (273)
T ss_pred CEEEEECccHHHHHHHHHHHH---------------------------CCCCCcceEEEECCCHHHHHHHHHHc------
Confidence 489999999999999999998 55 48999999999887765310
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.+...+.+..+++.++|+||+|||.. .+.++++.+.+.++++++|+..+.
T Consensus 48 -----------~g~~~~~~~~~~~~~aDiVilav~p~---------------~~~~vl~~l~~~l~~~~~iis~~a 97 (273)
T PRK07680 48 -----------PGIHVAKTIEEVISQSDLIFICVKPL---------------DIYPLLQKLAPHLTDEHCLVSITS 97 (273)
T ss_pred -----------CCeEEECCHHHHHHhCCEEEEecCHH---------------HHHHHHHHHHhhcCCCCEEEEECC
Confidence 12456677877889999999998532 467788889888888887775543
No 82
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.94 E-value=1.3e-08 Score=98.73 Aligned_cols=115 Identities=20% Similarity=0.319 Sum_probs=75.0
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC----C-CCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP----I-YEP 81 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~----~-~e~ 81 (598)
||+|||+|.||..+|..++. .|++|++||+|++.++...+.... . ...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~---------------------------~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~ 53 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR---------------------------AGYEVTLYDRSPEALERARKRIERLLDRLVRKG 53 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH---------------------------TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCHHHHHHHHHHHh---------------------------CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhc
Confidence 69999999999999999999 899999999999987654321100 0 000
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~STv~~ 160 (598)
.+.+........++++++|++++. +||+||-|+|.. ++.=++.++.+.+.+++++++ ...|+.++
T Consensus 54 ~~~~~~~~~~~~~i~~~~dl~~~~-~adlViEai~E~-------------l~~K~~~~~~l~~~~~~~~ilasnTSsl~i 119 (180)
T PF02737_consen 54 RLSQEEADAALARISFTTDLEEAV-DADLVIEAIPED-------------LELKQELFAELDEICPPDTILASNTSSLSI 119 (180)
T ss_dssp TTTHHHHHHHHHTEEEESSGGGGC-TESEEEE-S-SS-------------HHHHHHHHHHHHCCS-TTSEEEE--SSS-H
T ss_pred cchhhhhhhhhhhcccccCHHHHh-hhheehhhcccc-------------HHHHHHHHHHHHHHhCCCceEEecCCCCCH
Confidence 111000011124689999998766 999999998653 334467889999999999987 55566666
Q ss_pred HH
Q psy11160 161 RA 162 (598)
Q Consensus 161 ~~ 162 (598)
..
T Consensus 120 ~~ 121 (180)
T PF02737_consen 120 SE 121 (180)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 83
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.90 E-value=2.2e-07 Score=93.91 Aligned_cols=91 Identities=22% Similarity=0.329 Sum_probs=67.3
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC---c-eEEEEeC-CHHHHHHHHcCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN---I-QVTVVDK-SEERIRQWNSNK 75 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~-~v~~~d~-~~~~~~~~~~~~ 75 (598)
||. .+||+|||+|.||.+++..|.+ .| . +++++++ ++++.+.+.+.
T Consensus 1 ~m~-~~kI~iIG~G~mg~ala~~l~~---------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~- 51 (245)
T PRK07634 1 MLK-KHRILFIGAGRMAEAIFSGLLK---------------------------TSKEYIEEIIVSNRSNVEKLDQLQAR- 51 (245)
T ss_pred CCC-CCeEEEECcCHHHHHHHHHHHh---------------------------CCCCCcCeEEEECCCCHHHHHHHHHH-
Confidence 564 4799999999999999999988 33 3 3778887 57787776532
Q ss_pred CCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 76 LPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 76 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
.+...++++.++++++|+||+|+|.. .++++++++.+.++ +++||
T Consensus 52 -----------------~~~~~~~~~~~~~~~~DiViiavp~~---------------~~~~v~~~l~~~~~-~~~vi 96 (245)
T PRK07634 52 -----------------YNVSTTTDWKQHVTSVDTIVLAMPPS---------------AHEELLAELSPLLS-NQLVV 96 (245)
T ss_pred -----------------cCcEEeCChHHHHhcCCEEEEecCHH---------------HHHHHHHHHHhhcc-CCEEE
Confidence 12345677888899999999998753 35777788877776 45544
No 84
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.90 E-value=5.3e-08 Score=104.49 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=78.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.||.++|..|.+ .|++|.+|+++++..+........+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~---------------------------~G~~v~i~~~~~~~~~~~~a~~~~~------- 46 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKA---------------------------AGPDVFIIGYDPSAAQLARALGFGV------- 46 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHh---------------------------cCCCeEEEEeCCCHHHHHHHhcCCC-------
Confidence 479999999999999999999 8899999998877655443211100
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH-HcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAE-IATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~ivv~~STv~~~~~~ 164 (598)
.-..++++.+++++||+||+|||.. .+.++++++.+ .++++++|++.+++.....+
T Consensus 47 --------~~~~~~~~~~~~~~aDlVilavP~~---------------~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~ 103 (359)
T PRK06545 47 --------IDELAADLQRAAAEADLIVLAVPVD---------------ATAALLAELADLELKPGVIVTDVGSVKGAILA 103 (359)
T ss_pred --------CcccccCHHHHhcCCCEEEEeCCHH---------------HHHHHHHHHhhcCCCCCcEEEeCccccHHHHH
Confidence 0123567777889999999998753 46777888887 47889999998888876664
Q ss_pred HHH
Q psy11160 165 SIM 167 (598)
Q Consensus 165 ~~~ 167 (598)
.+.
T Consensus 104 ~~~ 106 (359)
T PRK06545 104 EAE 106 (359)
T ss_pred HHH
Confidence 443
No 85
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.86 E-value=5.9e-09 Score=109.32 Aligned_cols=122 Identities=21% Similarity=0.260 Sum_probs=85.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+|+||..+|..++. .|+ +|+++|++++..+... .++++++..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~---------------------------~g~~~VvlvDi~~~l~~g~a---~d~~~~~~~ 51 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE---------------------------KELADLVLLDVVEGIPQGKA---LDMYEASPV 51 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH---------------------------cCCCeEEEEeCCCChhHHHH---Hhhhhhhhc
Confidence 699999999999999999999 565 8999999766433111 123333321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+. ...++++++|+++ +++||+||+++++|.++++++.+ -..|++.++++.+.|.++.++..+|+. |-|.+..
T Consensus 52 ~~----~~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~--tNP~di~ 124 (305)
T TIGR01763 52 GG----FDTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVV--SNPLDAM 124 (305)
T ss_pred cC----CCcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHHH
Confidence 11 1246888899975 89999999999999876432111 135788999999999999765555554 4444444
Q ss_pred H
Q psy11160 164 E 164 (598)
Q Consensus 164 ~ 164 (598)
-
T Consensus 125 t 125 (305)
T TIGR01763 125 T 125 (305)
T ss_pred H
Confidence 3
No 86
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.84 E-value=2e-07 Score=108.45 Aligned_cols=118 Identities=15% Similarity=0.227 Sum_probs=82.6
Q ss_pred CCceEEEECCChhHHHHHHHHH-HhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC----C
Q psy11160 4 TISHICCIGAGYVGGPTCSVIA-LKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP----I 78 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~----~ 78 (598)
.++||+|||+|.||..+|..++ . .|++|+++|++++.++...+.... .
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~---------------------------~G~~V~l~d~~~~~l~~~~~~~~~~l~~~ 360 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATK---------------------------AGLPVRIKDINPQGINHALKYSWDLLDKK 360 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHH---------------------------cCCeEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999 6 899999999999877654321000 0
Q ss_pred CCCC-hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEec
Q psy11160 79 YEPG-LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKS 156 (598)
Q Consensus 79 ~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~S 156 (598)
.+.+ +.+.-......+++.++|++ ++++||+||-+|+.. ++.=++++.++.+.+++++|+ .++|
T Consensus 361 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEav~E~-------------~~~K~~v~~~le~~~~~~~ilasnTS 426 (708)
T PRK11154 361 VKRRHLKPSERDKQMALISGTTDYR-GFKHADVVIEAVFED-------------LALKQQMVAEVEQNCAPHTIFASNTS 426 (708)
T ss_pred HHcCCCCHHHHHHHHhcEEEeCChH-HhccCCEEeeccccc-------------HHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 0000 00000011125789999994 789999999998653 334467889999999999987 4455
Q ss_pred CCchHH
Q psy11160 157 TVPVRA 162 (598)
Q Consensus 157 Tv~~~~ 162 (598)
+.++..
T Consensus 427 ~l~i~~ 432 (708)
T PRK11154 427 SLPIGQ 432 (708)
T ss_pred CCCHHH
Confidence 566644
No 87
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.84 E-value=2.7e-07 Score=107.12 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=82.2
Q ss_pred CCceEEEECCChhHHHHHHHHH-HhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCC----CC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIA-LKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKL----PI 78 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~----~~ 78 (598)
.++||+|||+|.||..+|..++ . .|++|+++|++++.++....... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~---------------------------~G~~V~l~d~~~~~l~~~~~~~~~~l~~~ 355 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATK---------------------------AGIPVRIKDINPQGINNALKYAWKLLDKG 355 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHH---------------------------cCCeEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998 5 79999999999987765432100 00
Q ss_pred CC-CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEec
Q psy11160 79 YE-PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKS 156 (598)
Q Consensus 79 ~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~S 156 (598)
.+ ..+.+--......+++.++|++ ++++||+||-+||.. ++.=.+++.++.+.+++++|+ .++|
T Consensus 356 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~adlViEav~E~-------------l~~K~~v~~~l~~~~~~~~ilasnTS 421 (699)
T TIGR02440 356 VKRRHMTPAERDNQMALITGTTDYR-GFKDVDIVIEAVFED-------------LALKHQMVKDIEQECAAHTIFASNTS 421 (699)
T ss_pred HHcCCCCHHHHHHHHcCeEEeCChH-HhccCCEEEEecccc-------------HHHHHHHHHHHHhhCCCCcEEEeCCC
Confidence 00 0000100011125788999995 789999999998653 333467889999999999887 4456
Q ss_pred CCchHH
Q psy11160 157 TVPVRA 162 (598)
Q Consensus 157 Tv~~~~ 162 (598)
|.++..
T Consensus 422 ~l~i~~ 427 (699)
T TIGR02440 422 SLPIGQ 427 (699)
T ss_pred CCCHHH
Confidence 666644
No 88
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.83 E-value=1.1e-06 Score=102.24 Aligned_cols=205 Identities=13% Similarity=0.155 Sum_probs=130.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC--------
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-------- 75 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-------- 75 (598)
.+++|+|||+|.||..+|..++. +|++|+++|++++.+++..+..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~---------------------------~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~ 364 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSAS---------------------------KGTPIVMKDINQHSLDLGLTEAAKLLNKQV 364 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHh---------------------------CCCeEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999 8999999999999877533210
Q ss_pred --CCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-
Q psy11160 76 --LPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV- 152 (598)
Q Consensus 76 --~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv- 152 (598)
..+.+...+.. ..+++.++++. ++++||+||-+|+.. ++.=++++.++.+.+++++|+
T Consensus 365 ~~g~~~~~~~~~~-----~~~i~~~~~~~-~~~~aDlViEav~E~-------------l~~K~~vf~~l~~~~~~~~ila 425 (714)
T TIGR02437 365 ERGRITPAKMAGV-----LNGITPTLSYA-GFDNVDIVVEAVVEN-------------PKVKAAVLAEVEQHVREDAILA 425 (714)
T ss_pred HcCCCChhhHHHH-----HhCeEEeCCHH-HhcCCCEEEEcCccc-------------HHHHHHHHHHHHhhCCCCcEEE
Confidence 00111111111 24688999995 789999999999653 333467889999999999987
Q ss_pred EEecCCchHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhc-CCceEEEeccccchhhhhHHHHHhhcccC
Q psy11160 153 VEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIAT-DNKIVVEKSTVPVRAAESIMNVLKANHKT 231 (598)
Q Consensus 153 v~~STv~~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~-~~~lvv~eSTvP~gtt~~~~~~L~~~~~~ 231 (598)
.++||.++... +. .++ |..+ .
T Consensus 426 snTS~l~i~~i---a~-------------------------------~~~~p~r~------------------------i 447 (714)
T TIGR02437 426 SNTSTISISLL---AK-------------------------------ALKRPENF------------------------C 447 (714)
T ss_pred ECCCCCCHHHH---Hh-------------------------------hcCCcccE------------------------E
Confidence 45566666443 11 000 1000 0
Q ss_pred CceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEecC-chhHHHHHHHHHHHHHH
Q psy11160 232 NVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTN-TWSSELSKLAANAFLAQ 310 (598)
Q Consensus 232 g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~-~~~Ae~~Kl~~N~~~~~ 310 (598)
| .|+ ++|....+ +. | |+.|... .+++++.+..++..+++ .++.+.+ ++ ++.|- +
T Consensus 448 g--~Hf-f~P~~~~~------lv--E-vv~g~~T---s~~~~~~~~~~~~~lgk-~pv~v~d~pG------fi~NR---l 502 (714)
T TIGR02437 448 G--MHF-FNPVHRMP------LV--E-VIRGEKS---SDETIATVVAYASKMGK-TPIVVNDCPG------FFVNR---V 502 (714)
T ss_pred E--Eec-CCCcccCc------eE--e-ecCCCCC---CHHHHHHHHHHHHHcCC-EEEEeCCccc------chHHH---H
Confidence 1 111 24433221 11 2 4455433 34788889999998874 5665543 22 23333 3
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHcC
Q psy11160 311 RISSINSLSAVCEATGADVSEVAKAVGL 338 (598)
Q Consensus 311 ~ia~~nE~~~la~~~gid~~ev~~~l~~ 338 (598)
...+.+|...+.+. |++++++=+++..
T Consensus 503 ~~~~~~ea~~l~~e-G~~~~~ID~a~~~ 529 (714)
T TIGR02437 503 LFPYFGGFSKLLRD-GADFVRIDKVMEK 529 (714)
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHh
Confidence 34567898888764 5899888777754
No 89
>KOG2653|consensus
Probab=98.83 E-value=8.9e-08 Score=98.87 Aligned_cols=211 Identities=15% Similarity=0.175 Sum_probs=145.5
Q ss_pred CCCC-CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC---C
Q psy11160 1 MVQT-ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK---L 76 (598)
Q Consensus 1 m~~~-~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~---~ 76 (598)
|.|. .+.|+.|||+.||..++.+.++ +|+.|.+|+|...+++.+.++. .
T Consensus 1 m~q~~~~digLiGLaVMGqnLiLN~~d---------------------------~Gf~v~~yNRT~skvD~flaneak~~ 53 (487)
T KOG2653|consen 1 MSQTPKADIGLIGLAVMGQNLILNIAD---------------------------KGFTVCAYNRTTSKVDEFLANEAKGT 53 (487)
T ss_pred CCCccccchhhhhHhhhhhhhhhcccc---------------------------cCceEEEeccchHhHHHHHHHhhcCC
Confidence 5553 4789999999999999999999 8999999999999999876431 2
Q ss_pred CCC-CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 77 PIY-EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 77 ~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
++. ...+++++ .-++..-+|++.|.... .|...++++.+++.++.+||+-
T Consensus 54 ~i~ga~S~ed~v---------------~klk~PR~iillvkAG~--------------pVD~~I~~L~p~LekgDiIIDG 104 (487)
T KOG2653|consen 54 KIIGAYSLEDFV---------------SKLKKPRVIILLVKAGA--------------PVDQFIEELVPYLEKGDIIIDG 104 (487)
T ss_pred cccCCCCHHHHH---------------HhcCCCcEEEEEeeCCC--------------cHHHHHHHHHhhcCCCCEEEeC
Confidence 221 22333333 23456677777774321 3666788999999999999986
Q ss_pred cCCc-hHHHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCce
Q psy11160 156 STVP-VRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQ 234 (598)
Q Consensus 156 STv~-~~~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~ 234 (598)
.... +.|.|+-- .|.+ .|
T Consensus 105 GNs~y~dT~RR~~--------------------------------------------------------el~k---~G-- 123 (487)
T KOG2653|consen 105 GNSEYQDTERRCR--------------------------------------------------------ELAK---KG-- 123 (487)
T ss_pred CcccCcchHHHHH--------------------------------------------------------HHHh---cC--
Confidence 5543 33332211 1222 12
Q ss_pred eeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccC------CceEEecCchhHHHHHHHHHHHH
Q psy11160 235 FQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIP------RKHILTTNTWSSELSKLAANAFL 308 (598)
Q Consensus 235 ~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~------~~~v~~~~~~~Ae~~Kl~~N~~~ 308 (598)
+-++.+-+.+ | .+++..=|.+|+||.. ++-..++++|+.+.. +....+|..+++..+|+++|-.-
T Consensus 124 ilfvG~GVSG--G--EEGAR~GPSlMpGg~~-----~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIE 194 (487)
T KOG2653|consen 124 ILFVGSGVSG--G--EEGARYGPSLMPGGSK-----EAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIE 194 (487)
T ss_pred cEEEecCccC--c--ccccccCCccCCCCCh-----HHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcc
Confidence 1122221111 1 1223333448999976 578888888887641 11345788999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHc
Q psy11160 309 AQRISSINSLSAVCEA-TGADVSEVAKAVG 337 (598)
Q Consensus 309 ~~~ia~~nE~~~la~~-~gid~~ev~~~l~ 337 (598)
..-+..+.|...+.+. .|+.-.|+.+++.
T Consensus 195 YGDMqLI~EaY~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 195 YGDMQLICEAYDVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred cchHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999888 8999999988886
No 90
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.83 E-value=9.6e-07 Score=92.97 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
|-...|||+|||+|.||+.+|..|++ +|++|+++.+++. +.++.....+..
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~---------------------------~g~~V~~~~r~~~--~~~~~~g~~~~~ 51 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLAR---------------------------AGFDVHFLLRSDY--EAVRENGLQVDS 51 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEEeCCH--HHHHhCCeEEEe
Confidence 43456899999999999999999999 8999999999863 344432222211
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
..-+. ......++++.+ ....+|+||+||+... +.++++.+.+.+.++.+|+
T Consensus 52 ~~~~~-----~~~~~~~~~~~~-~~~~~D~vilavK~~~---------------~~~~~~~l~~~~~~~~~iv 103 (313)
T PRK06249 52 VHGDF-----HLPPVQAYRSAE-DMPPCDWVLVGLKTTA---------------NALLAPLIPQVAAPDAKVL 103 (313)
T ss_pred CCCCe-----eecCceEEcchh-hcCCCCEEEEEecCCC---------------hHhHHHHHhhhcCCCCEEE
Confidence 00000 001133444544 4678999999987652 4567778888888777655
No 91
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.81 E-value=9.4e-09 Score=93.81 Aligned_cols=96 Identities=24% Similarity=0.220 Sum_probs=66.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEE-eCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVV-DKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+||+|||+|.||..++..|.+ .||+|.++ .++.+..+.+.....
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~---------------------------ag~~v~~v~srs~~sa~~a~~~~~------- 55 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALAR---------------------------AGHEVVGVYSRSPASAERAAAFIG------- 55 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHH---------------------------TTSEEEEESSCHH-HHHHHHC--T-------
T ss_pred ccEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEEeCCcccccccccccc-------
Confidence 4799999999999999999999 89999886 677777777664211
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH--cCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI--ATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~ivv~~STv~~ 160 (598)
. ....++.+.+.+||++||+||.. .+.++.++|... .+++++|+.+|-.-.
T Consensus 56 ----------~-~~~~~~~~~~~~aDlv~iavpDd---------------aI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 56 ----------A-GAILDLEEILRDADLVFIAVPDD---------------AIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp ----------T------TTGGGCC-SEEEE-S-CC---------------HHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred ----------c-ccccccccccccCCEEEEEechH---------------HHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 1 12334566889999999998754 688899999887 789999999886543
No 92
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.80 E-value=1.4e-07 Score=99.41 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=122.9
Q ss_pred hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-------HHHHHcCC----CCCCCCC-h
Q psy11160 16 VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-------IRQWNSNK----LPIYEPG-L 83 (598)
Q Consensus 16 vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-------~~~~~~~~----~~~~e~~-~ 83 (598)
||..+|..++. +|++|+++|++++. ++...+.. ....+.+ +
T Consensus 1 MG~giA~~~a~---------------------------~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 53 (314)
T PRK08269 1 MGQGIALAFAF---------------------------AGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRI 53 (314)
T ss_pred CcHHHHHHHHh---------------------------CCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 79999999999 89999999999953 22211100 0000001 0
Q ss_pred HHHHhhhcCCceEEecC--HHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 84 DEVVKKTRDVNLFFSTD--IKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~--~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.+--......+++++++ +.+++++||+||.|||.+. ..=..++.+|.+.+++++|+ .||.+.-
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~~~a~~~aD~ViEav~E~~-------------~~K~~~f~~l~~~~~~~~il--aSntS~~ 118 (314)
T PRK08269 54 DAAQADAVLARIAVVARDGAADALADADLVFEAVPEVL-------------DAKREALRWLGRHVDADAII--ASTTSTF 118 (314)
T ss_pred ChhhHHHHHhCeEeecCcchHHHhccCCEEEECCcCCH-------------HHHHHHHHHHHhhCCCCcEE--EEccccC
Confidence 00000011246777765 6678999999999997653 22345677888999999888 3555444
Q ss_pred HHHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECC
Q psy11160 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~P 241 (598)
...+++..++ ++... .| .+
T Consensus 119 ~~~~la~~~~------------------------------~p~r~------------------------~g--~H----- 137 (314)
T PRK08269 119 LVTDLQRHVA------------------------------HPERF------------------------LN--AH----- 137 (314)
T ss_pred CHHHHHhhcC------------------------------CcccE------------------------EE--Ee-----
Confidence 4444443100 00000 01 11
Q ss_pred cccCcCchhhhcCCCCE-----EEEccCCCchhHHHHHHHHHHHhcccCCceEEecCchhHHHHHHHHHHHHHHHHHHHH
Q psy11160 242 EFLSEGTAMTDLFNADR-----ILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSIN 316 (598)
Q Consensus 242 e~~~~G~a~~~~~~p~r-----v~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~~~~~~Ae~~Kl~~N~~~~~~ia~~n 316 (598)
+++|+. =+++|... .+++++.+.++++.+++ .++++++.. + +++......+++
T Consensus 138 -----------f~~Pp~~~~lvEVv~g~~t--~~e~~~~~~~ll~~lGk-~~v~v~d~~-G-------fi~nri~~~~l~ 195 (314)
T PRK08269 138 -----------WLNPAYLMPLVEVSPSDAT--DPAVVDRLAALLERIGK-VPVVCGPSP-G-------YIVPRIQALAMN 195 (314)
T ss_pred -----------cCCccccCceEEEeCCCCC--CHHHHHHHHHHHHHcCC-cEEEecCCC-C-------cchHHHHHHHHH
Confidence 222221 13455432 34789999999999874 567776543 2 234566778889
Q ss_pred HHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 317 SLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 317 E~~~la~~~gid~~ev~~~l~~~~ 340 (598)
|...++++.+++++++-+++....
T Consensus 196 EAl~l~e~g~~~~e~iD~a~~~g~ 219 (314)
T PRK08269 196 EAARMVEEGVASAEDIDKAIRTGF 219 (314)
T ss_pred HHHHHHHhCCCCHHHHHHHHHhCC
Confidence 999999999999999999987543
No 93
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.76 E-value=7.2e-07 Score=92.21 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=72.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEE--eCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVV--DKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~--d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.++|+|+|+|.||.++|..|.. .|+.|.++ |++.+..+.-....
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~---------------------------~g~~v~i~g~d~~~~~~~~a~~lg------- 48 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKE---------------------------AGLVVRIIGRDRSAATLKAALELG------- 48 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHH---------------------------cCCeEEEEeecCcHHHHHHHhhcC-------
Confidence 5799999999999999999999 78877555 55554444433210
Q ss_pred hHHHHhhhcCCceEEecCH-HHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDI-KSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.....+.+. .+++.+||+||+|||-. .+.++++.+.+.++++++|++-+++--.
T Consensus 49 ----------v~d~~~~~~~~~~~~~aD~VivavPi~---------------~~~~~l~~l~~~l~~g~iv~Dv~S~K~~ 103 (279)
T COG0287 49 ----------VIDELTVAGLAEAAAEADLVIVAVPIE---------------ATEEVLKELAPHLKKGAIVTDVGSVKSS 103 (279)
T ss_pred ----------cccccccchhhhhcccCCEEEEeccHH---------------HHHHHHHHhcccCCCCCEEEecccccHH
Confidence 011222333 45788899999998754 5788889999999999999987777544
Q ss_pred HH
Q psy11160 162 AA 163 (598)
Q Consensus 162 ~~ 163 (598)
-.
T Consensus 104 v~ 105 (279)
T COG0287 104 VV 105 (279)
T ss_pred HH
Confidence 44
No 94
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.76 E-value=2.1e-07 Score=108.46 Aligned_cols=115 Identities=17% Similarity=0.295 Sum_probs=84.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+.+|+|||+|.||..+|..++. .|++|+++|++++.++...+... ..+
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~---------------------------~G~~V~l~d~~~~~l~~~~~~i~----~~l 382 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVD---------------------------KGLKTVLKDATPAGLDRGQQQVF----KGL 382 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHh---------------------------CCCcEEEecCCHHHHHHHHHHHH----HHH
Confidence 35789999999999999999999 89999999999998776432110 001
Q ss_pred HHHHh---------hhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-E
Q psy11160 84 DEVVK---------KTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-V 153 (598)
Q Consensus 84 ~~~~~---------~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v 153 (598)
+..++ .....+++.++|++ ++++||+||-+|+.. ++.=.++++++.+.+++++|+ .
T Consensus 383 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEAv~E~-------------l~~K~~vf~~l~~~~~~~~ilas 448 (737)
T TIGR02441 383 NKKVKRKKITSLERDSILSNLTPTLDYS-GFKNADMVIEAVFED-------------LSLKHKVIKEVEAVVPPHCIIAS 448 (737)
T ss_pred HHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeehhhcccc-------------HHHHHHHHHHHHhhCCCCcEEEE
Confidence 11111 11125789999996 789999999999653 333467889999999999887 5
Q ss_pred EecCCchHHH
Q psy11160 154 EKSTVPVRAA 163 (598)
Q Consensus 154 ~~STv~~~~~ 163 (598)
++||.++...
T Consensus 449 NTSsl~i~~l 458 (737)
T TIGR02441 449 NTSALPIKDI 458 (737)
T ss_pred cCCCCCHHHH
Confidence 5677776543
No 95
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.71 E-value=5.6e-08 Score=102.15 Aligned_cols=125 Identities=24% Similarity=0.402 Sum_probs=88.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
|||+|||+ |++|..+|..|+. .|+ +|+++|+++ +.+.++....++.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~---------------------------~g~~~~v~lvd~~~-~~~~l~~~~~dl~d-- 50 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK---------------------------EDVVKEINLISRPK-SLEKLKGLRLDIYD-- 50 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHh---------------------------CCCCCEEEEEECcc-cccccccccchhhh--
Confidence 69999998 9999999999999 454 699999954 44444444444331
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.+.......+++++++++ ++++||+||+++++|..+++++.+ ...+.+.++++.+.|.+..+...++|..+++++.
T Consensus 51 --~~~~~~~~~~i~~~~d~~-~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~ 127 (309)
T cd05294 51 --ALAAAGIDAEIKISSDLS-DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVM 127 (309)
T ss_pred --chhccCCCcEEEECCCHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHH
Confidence 111111112466677765 699999999999998765432111 1223388999999999998888889999999998
Q ss_pred HH
Q psy11160 162 AA 163 (598)
Q Consensus 162 ~~ 163 (598)
+.
T Consensus 128 t~ 129 (309)
T cd05294 128 TY 129 (309)
T ss_pred HH
Confidence 85
No 96
>PLN02256 arogenate dehydrogenase
Probab=98.71 E-value=1.7e-06 Score=90.69 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=71.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..|.+ .|++|++||+++.. +....
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~---------------------------~G~~V~~~d~~~~~-~~a~~----------- 76 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVK---------------------------QGHTVLATSRSDYS-DIAAE----------- 76 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHh---------------------------CCCEEEEEECccHH-HHHHH-----------
Confidence 4799999999999999999998 78999999998643 22221
Q ss_pred HHHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHH-HHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMI-AEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ivv~~STv~~~~ 162 (598)
.+....++.++++ .++|+||+|||.. .+.++++.+ .+.++++++|++-+++-...
T Consensus 77 --------~gv~~~~~~~e~~~~~aDvVilavp~~---------------~~~~vl~~l~~~~l~~~~iviDv~SvK~~~ 133 (304)
T PLN02256 77 --------LGVSFFRDPDDFCEEHPDVVLLCTSIL---------------STEAVLRSLPLQRLKRSTLFVDVLSVKEFP 133 (304)
T ss_pred --------cCCeeeCCHHHHhhCCCCEEEEecCHH---------------HHHHHHHhhhhhccCCCCEEEecCCchHHH
Confidence 0123456676665 4799999998643 467777777 56788999998877764434
Q ss_pred H
Q psy11160 163 A 163 (598)
Q Consensus 163 ~ 163 (598)
.
T Consensus 134 ~ 134 (304)
T PLN02256 134 K 134 (304)
T ss_pred H
Confidence 3
No 97
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.70 E-value=1.6e-08 Score=98.47 Aligned_cols=72 Identities=26% Similarity=0.341 Sum_probs=52.6
Q ss_pred ccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCcccCcCchhhhcCCCC
Q psy11160 178 VQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNAD 257 (598)
Q Consensus 178 ~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~ 257 (598)
|...++.+|++||++|++.|+++++++.+||+|||||||||+ +++.+.++.. ...+..++..++||
T Consensus 87 P~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~---~~~~~ile~~-----------~~~~~~f~la~~PE 152 (185)
T PF03721_consen 87 PSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE---ELLKPILEKR-----------SGKKEDFHLAYSPE 152 (185)
T ss_dssp EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH---HHHHHHHHHH-----------CCTTTCEEEEE---
T ss_pred CccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh---Hhhhhhhhhh-----------cccccCCeEEECCC
Confidence 344578999999999999999999999999999999999998 5776655321 11125678899999
Q ss_pred EEEEcc
Q psy11160 258 RILIGG 263 (598)
Q Consensus 258 rv~vGg 263 (598)
|+..|.
T Consensus 153 rl~~G~ 158 (185)
T PF03721_consen 153 RLREGR 158 (185)
T ss_dssp ---TTS
T ss_pred ccCCCC
Confidence 998874
No 98
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.69 E-value=1.2e-06 Score=89.89 Aligned_cols=96 Identities=10% Similarity=0.140 Sum_probs=71.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|||+|.||.+++..|.++ . . + ...+++++|+++++. +
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~-~------------------~--~--~~~~i~~~~~~~~~~-----~----------- 44 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS-N------------------I--I--GKENIYYHTPSKKNT-----P----------- 44 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC-C------------------C--C--CcceEEEECCChhcC-----C-----------
Confidence 6899999999999999999981 0 0 0 124699999876542 1
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
...+.+..++++++|+||+|||.. .+.++++.+.+.+.++.+|.+.+.+...+.+
T Consensus 45 ---------~~~~~~~~~~~~~~D~Vilavkp~---------------~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~ 99 (260)
T PTZ00431 45 ---------FVYLQSNEELAKTCDIIVLAVKPD---------------LAGKVLLEIKPYLGSKLLISICGGLNLKTLE 99 (260)
T ss_pred ---------eEEeCChHHHHHhCCEEEEEeCHH---------------HHHHHHHHHHhhccCCEEEEEeCCccHHHHH
Confidence 123456667788999999998532 5788888998888777778888888766654
No 99
>PLN02712 arogenate dehydrogenase
Probab=98.67 E-value=1.7e-06 Score=99.61 Aligned_cols=93 Identities=12% Similarity=0.163 Sum_probs=71.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..|.. .|++|++||++.+. +...+
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~---------------------------~G~~V~~~dr~~~~-~~a~~----------- 409 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVK---------------------------QGHTVLAYSRSDYS-DEAQK----------- 409 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHH---------------------------CcCEEEEEECChHH-HHHHH-----------
Confidence 4799999999999999999999 78999999998653 22221
Q ss_pred HHHhhhcCCceEEecCHHHHhc-cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH-HcCCCcEEEEecCCc
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQ-KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAE-IATDNKIVVEKSTVP 159 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~ivv~~STv~ 159 (598)
.+....++.++++. .+|+||+|||.. .+.++++.+.. .++++++|++.+++-
T Consensus 410 --------~Gv~~~~~~~el~~~~aDvVILavP~~---------------~~~~vi~~l~~~~lk~g~ivvDv~SvK 463 (667)
T PLN02712 410 --------LGVSYFSDADDLCEEHPEVILLCTSIL---------------STEKVLKSLPFQRLKRSTLFVDVLSVK 463 (667)
T ss_pred --------cCCeEeCCHHHHHhcCCCEEEECCChH---------------HHHHHHHHHHHhcCCCCcEEEECCCcc
Confidence 01234567776665 599999998743 35666777765 578899999998886
No 100
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.66 E-value=1.3e-06 Score=102.28 Aligned_cols=105 Identities=16% Similarity=0.223 Sum_probs=83.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
..+|+|||+|.||.++|..|.. .| ++|++||+++++.+.+.+...
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~---------------------------~G~~~~V~~~d~~~~~~~~a~~~g~------ 49 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRE---------------------------RGLAREVVAVDRRAKSLELAVSLGV------ 49 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHh---------------------------cCCCCEEEEEECChhHHHHHHHCCC------
Confidence 4789999999999999999998 66 589999999999877653210
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
....+++..++++++|+||+|||.. .+.++++.+.+.++++++|++.+++....
T Consensus 50 -----------~~~~~~~~~~~~~~aDvVilavp~~---------------~~~~vl~~l~~~~~~~~ii~d~~svk~~~ 103 (735)
T PRK14806 50 -----------IDRGEEDLAEAVSGADVIVLAVPVL---------------AMEKVLADLKPLLSEHAIVTDVGSTKGNV 103 (735)
T ss_pred -----------CCcccCCHHHHhcCCCEEEECCCHH---------------HHHHHHHHHHHhcCCCcEEEEcCCCchHH
Confidence 0113456677889999999998742 47788889999999999999999998777
Q ss_pred HHHHHH
Q psy11160 163 AESIMN 168 (598)
Q Consensus 163 ~~~~~~ 168 (598)
.+.+..
T Consensus 104 ~~~l~~ 109 (735)
T PRK14806 104 VDAARA 109 (735)
T ss_pred HHHHHH
Confidence 665543
No 101
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.66 E-value=2e-07 Score=93.11 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=68.5
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC-CCCCCh
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP-IYEPGL 83 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~-~~e~~~ 83 (598)
|||+||| +|.||.++|..|++ .|++|+++++++++.+.+++.... +...+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~---------------------------~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~ 53 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAK---------------------------AGNKIIIGSRDLEKAEEAAAKALEELGHGGS 53 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHh---------------------------CCCEEEEEEcCHHHHHHHHHHHHhhccccCC
Confidence 5899997 89999999999999 899999999999998887642110 000000
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
..+... ++..++++++|+||+|||.+ .+.++++.+.+.+.. ++|+.
T Consensus 54 --------~~~~~~-~~~~ea~~~aDvVilavp~~---------------~~~~~l~~l~~~l~~-~vvI~ 99 (219)
T TIGR01915 54 --------DIKVTG-ADNAEAAKRADVVILAVPWD---------------HVLKTLESLRDELSG-KLVIS 99 (219)
T ss_pred --------CceEEE-eChHHHHhcCCEEEEECCHH---------------HHHHHHHHHHHhccC-CEEEE
Confidence 011233 35567899999999998754 466677777776654 65553
No 102
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.64 E-value=7.2e-08 Score=101.13 Aligned_cols=122 Identities=25% Similarity=0.277 Sum_probs=82.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|+||+|||+|+||..+|..++. .|+ +|+++|+++++.+.... .+.+..
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~---------------------------~~~~ev~L~D~~~~~~~~~~~---dl~~~~- 50 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLAL---------------------------KELGDVVLFDIVEGVPQGKAL---DIAEAA- 50 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEEECCCchhHHHHH---HHHhhh-
Confidence 4799999999999999999998 554 99999999887654321 011100
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.......++++++|++ ++++||+||++++.|.+++.++.+ -..++..++++++.|.+..++..+++. |-|...
T Consensus 51 ---~~~~~~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~d~ 124 (307)
T PRK06223 51 ---PVEGFDTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV--TNPVDA 124 (307)
T ss_pred ---hhcCCCcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 0001123567778885 789999999999888765321100 124567788888999988866656665 444444
Q ss_pred H
Q psy11160 163 A 163 (598)
Q Consensus 163 ~ 163 (598)
.
T Consensus 125 ~ 125 (307)
T PRK06223 125 M 125 (307)
T ss_pred H
Confidence 3
No 103
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.62 E-value=3.5e-06 Score=86.24 Aligned_cols=88 Identities=25% Similarity=0.413 Sum_probs=69.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCHHHHHHHHcCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~~~~~~~~~~~~~~~e 80 (598)
++||+|||+|.||..|+..|.+ .| .+|++.++++++.+.+....
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~---------------------------~g~~~~~~I~v~~~~~e~~~~l~~~~----- 48 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLK---------------------------SGALPPEEIIVTNRSEEKRAALAAEY----- 48 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHh---------------------------cCCCCcceEEEeCCCHHHHHHHHHHc-----
Confidence 3789999999999999999998 44 79999999999998555321
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
+...+++..+++.++|+||+||. |. .+++++..+.+ ..++++||
T Consensus 49 -------------g~~~~~~~~~~~~~advv~LavK-Pq--------------~~~~vl~~l~~-~~~~~lvI 92 (266)
T COG0345 49 -------------GVVTTTDNQEAVEEADVVFLAVK-PQ--------------DLEEVLSKLKP-LTKDKLVI 92 (266)
T ss_pred -------------CCcccCcHHHHHhhCCEEEEEeC-hH--------------hHHHHHHHhhc-ccCCCEEE
Confidence 11126777788999999999994 43 46778888877 67777776
No 104
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.57 E-value=5e-06 Score=89.20 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=69.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||+ |.||.++|..|.+ . .|++|+++|++. +
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~-------------------------~-~~~~V~g~D~~d-------~---------- 40 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRT-------------------------R-MQLEVIGHDPAD-------P---------- 40 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh-------------------------c-CCCEEEEEcCCc-------c----------
Confidence 479999999 9999999999997 1 478999999840 0
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH---cCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI---ATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~ivv~~STv~~ 160 (598)
.+.++.+++++||+||+|||.. .+.++++++++. ++++++|++-+++-.
T Consensus 41 -------------~~~~~~~~v~~aDlVilavPv~---------------~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~ 92 (370)
T PRK08818 41 -------------GSLDPATLLQRADVLIFSAPIR---------------HTAALIEEYVALAGGRAAGQLWLDVTSIKQ 92 (370)
T ss_pred -------------ccCCHHHHhcCCCEEEEeCCHH---------------HHHHHHHHHhhhhcCCCCCeEEEECCCCcH
Confidence 1235667889999999998643 567788888876 789999999888764
Q ss_pred HHH
Q psy11160 161 RAA 163 (598)
Q Consensus 161 ~~~ 163 (598)
.-.
T Consensus 93 ~i~ 95 (370)
T PRK08818 93 APV 95 (370)
T ss_pred HHH
Confidence 433
No 105
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.50 E-value=1.4e-06 Score=91.54 Aligned_cols=119 Identities=18% Similarity=0.298 Sum_probs=80.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHH----HHcCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQ----WNSNKLPIY 79 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~----~~~~~~~~~ 79 (598)
|||+|||+|+||.++|..|+. .| .+|+++|+++++.+. ++.. .++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~---------------------------~g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~ 52 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLL---------------------------RGLASEIVLVDINKAKAEGEAMDLAHG-TPFV 52 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------cCCCCEEEEEECCchhhhhHHHHHHcc-cccc
Confidence 589999999999999999999 56 699999999987764 4432 2222
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
++ ....+++++ ++++||++|++++.|.++..++.+ ...+.+.+++..+.|.++.+++.+++. |-
T Consensus 53 ~~------------~~i~~~d~~-~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~--tN 117 (308)
T cd05292 53 KP------------VRIYAGDYA-DCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV--TN 117 (308)
T ss_pred CC------------eEEeeCCHH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cC
Confidence 21 122356764 799999999999998765332100 122455677777778777756555554 45
Q ss_pred chHHHHHHH
Q psy11160 159 PVRAAESIM 167 (598)
Q Consensus 159 ~~~~~~~~~ 167 (598)
|....-.++
T Consensus 118 P~d~~~~~~ 126 (308)
T cd05292 118 PVDVLTYVA 126 (308)
T ss_pred cHHHHHHHH
Confidence 655554444
No 106
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.48 E-value=1e-06 Score=91.15 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=67.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCH-HHHHHHHcCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSE-ERIRQWNSNKLPIYE 80 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~-~~~~~~~~~~~~~~e 80 (598)
++|+|||+|.||.+++..|.+ .| ++|++|++++ ++.+.+....
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~---------------------------~g~~~~~~V~~~~r~~~~~~~~l~~~~----- 49 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLE---------------------------TEVATPEEIILYSSSKNEHFNQLYDKY----- 49 (277)
T ss_pred CEEEEECccHHHHHHHHHHHH---------------------------CCCCCcccEEEEeCCcHHHHHHHHHHc-----
Confidence 689999999999999999998 55 7899999864 4455544210
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
.....+.+..++++++|+||+|||.. .+.++++++.+.++++++||
T Consensus 50 ------------~~~~~~~~~~e~~~~aDvVilavpp~---------------~~~~vl~~l~~~l~~~~~iv 95 (277)
T PRK06928 50 ------------PTVELADNEAEIFTKCDHSFICVPPL---------------AVLPLLKDCAPVLTPDRHVV 95 (277)
T ss_pred ------------CCeEEeCCHHHHHhhCCEEEEecCHH---------------HHHHHHHHHHhhcCCCCEEE
Confidence 12345677777889999999998732 47788888988888777655
No 107
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.47 E-value=5.8e-07 Score=94.10 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=79.3
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
|+|||+|+||..+|..++. .|+ +|+++|+++++.+.... .+.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~---------------------------~~l~eV~L~Di~e~~~~g~~~--------dl~~~ 45 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL---------------------------KELGDVVLLDIVEGLPQGKAL--------DISQA 45 (300)
T ss_pred CEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEEeCCCcHHHHHHH--------HHHHh
Confidence 6899999999999999998 555 99999999876543221 11111
Q ss_pred Hhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 87 VKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.... ...+++.++|++ ++++||+||+++++|.++++.+.+ -..++..++++++.|.+..+++.+++...++
T Consensus 46 ~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~ 118 (300)
T cd01339 46 APILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL 118 (300)
T ss_pred hhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 1111 123577777875 699999999999998765432111 1236777888889999988777666665444
No 108
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.47 E-value=9.4e-07 Score=82.32 Aligned_cols=123 Identities=22% Similarity=0.272 Sum_probs=80.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+ |.||..+|..|.. ++.+.++.++|+++++.+.... ++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~-------------------------~~l~~ei~L~D~~~~~~~g~a~--------Dl~ 47 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQ-------------------------QGLADEIVLIDINEDKAEGEAL--------DLS 47 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHH-------------------------TTTSSEEEEEESSHHHHHHHHH--------HHH
T ss_pred CEEEEECCCChHHHHHHHHHHh-------------------------CCCCCceEEeccCcccceeeeh--------hhh
Confidence 69999999 9999999999998 2245689999999887765431 111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
...... ....+...+..+++++||+||++...|..+..++.+ -..+.+.+++..+.|.++.+++.+++. |-|....
T Consensus 48 ~~~~~~-~~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivv--tNPvd~~ 124 (141)
T PF00056_consen 48 HASAPL-PSPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVV--TNPVDVM 124 (141)
T ss_dssp HHHHGS-TEEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHHH
T ss_pred hhhhhc-ccccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEe--CCcHHHH
Confidence 111111 122334445556899999999999888765432111 133456677777888888866655554 5555544
Q ss_pred H
Q psy11160 164 E 164 (598)
Q Consensus 164 ~ 164 (598)
-
T Consensus 125 t 125 (141)
T PF00056_consen 125 T 125 (141)
T ss_dssp H
T ss_pred H
Confidence 3
No 109
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.45 E-value=9.5e-07 Score=93.13 Aligned_cols=98 Identities=11% Similarity=0.057 Sum_probs=73.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||.++|..|.+ .|++|++++++..+.......
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~---------------------------sG~~Vvv~~r~~~~s~~~A~~---------- 59 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRD---------------------------SGVDVVVGLREGSKSWKKAEA---------- 59 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHH---------------------------CCCEEEEEECCchhhHHHHHH----------
Confidence 3689999999999999999999 899999988875443322211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.+... .+..+++++||+|+++||.. ....++ +.|.+.++++++|+..+-++....
T Consensus 60 --------~G~~~-~s~~eaa~~ADVVvLaVPd~---------------~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~ 115 (330)
T PRK05479 60 --------DGFEV-LTVAEAAKWADVIMILLPDE---------------VQAEVYEEEIEPNLKEGAALAFAHGFNIHFG 115 (330)
T ss_pred --------CCCee-CCHHHHHhcCCEEEEcCCHH---------------HHHHHHHHHHHhcCCCCCEEEECCCCChhhc
Confidence 12233 37788999999999999743 235566 778899999999988777666554
No 110
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.41 E-value=1.4e-06 Score=85.44 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=69.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC-CHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK-SEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~-~~~~~~~~~~~~~~~~e~~~ 83 (598)
||+|+|+|.|.+|..+|..|++ .||+|+.-.+ .+++.+...+...+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~---------------------------ag~eV~igs~r~~~~~~a~a~~l~~------ 47 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAK---------------------------AGHEVIIGSSRGPKALAAAAAALGP------ 47 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHh---------------------------CCCeEEEecCCChhHHHHHHHhhcc------
Confidence 4789999999999999999999 8999999854 55556655543221
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.++. .+.++|++.||+||++||.+ ++..+++++...+. ++|||+ .|+|
T Consensus 48 ----------~i~~-~~~~dA~~~aDVVvLAVP~~---------------a~~~v~~~l~~~~~-~KIvID-~tnp 95 (211)
T COG2085 48 ----------LITG-GSNEDAAALADVVVLAVPFE---------------AIPDVLAELRDALG-GKIVID-ATNP 95 (211)
T ss_pred ----------cccc-CChHHHHhcCCEEEEeccHH---------------HHHhHHHHHHHHhC-CeEEEe-cCCC
Confidence 1232 34567899999999999764 46677777777665 777765 6666
No 111
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.38 E-value=1.3e-06 Score=91.60 Aligned_cols=121 Identities=19% Similarity=0.225 Sum_probs=79.2
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|+|||+|+||.++|..++. .| .+++++|+++++++.+... +++
T Consensus 1 i~iiGaG~VG~~~a~~l~~---------------------------~~~~~el~l~D~~~~~~~g~~~D--------L~~ 45 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA---------------------------KGLASELVLVDVNEEKAKGDALD--------LSH 45 (300)
T ss_pred CEEECCCHHHHHHHHHHHh---------------------------cCCCCEEEEEeCCccHHHHHHHh--------HHH
Confidence 6899999999999999998 55 6899999999988876642 222
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
........+++.+++++ ++++||+||+++++|..+..++.+ -..+...+++..+.|.++.+++.+++. | -|....-
T Consensus 46 ~~~~~~~~~i~~~~~~~-~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~-s-NP~d~~~ 122 (300)
T cd00300 46 ASAFLATGTIVRGGDYA-DAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVV-S-NPVDILT 122 (300)
T ss_pred hccccCCCeEEECCCHH-HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc-c-ChHHHHH
Confidence 22111112455566765 899999999999998765432211 122345566667777777744444443 3 4444443
Q ss_pred HH
Q psy11160 165 SI 166 (598)
Q Consensus 165 ~~ 166 (598)
.+
T Consensus 123 ~~ 124 (300)
T cd00300 123 YV 124 (300)
T ss_pred HH
Confidence 33
No 112
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.33 E-value=4.2e-06 Score=88.83 Aligned_cols=92 Identities=20% Similarity=0.285 Sum_probs=69.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.||.++|..|+. .|++|++||+++......
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~---------------------------~G~~V~~~d~~~~~~~~~-------------- 185 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAG---------------------------FGATITAYDAYPNKDLDF-------------- 185 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEeCChhHhhhh--------------
Confidence 689999999999999999998 799999999987542210
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
...+.++++++++||+|++++|.... ...+ ..+.+.+.++++.++|+.|--..
T Consensus 186 ---------~~~~~~l~ell~~aDiVil~lP~t~~-----------t~~l--i~~~~l~~mk~gavlIN~aRG~~ 238 (330)
T PRK12480 186 ---------LTYKDSVKEAIKDADIISLHVPANKE-----------SYHL--FDKAMFDHVKKGAILVNAARGAV 238 (330)
T ss_pred ---------hhccCCHHHHHhcCCEEEEeCCCcHH-----------HHHH--HhHHHHhcCCCCcEEEEcCCccc
Confidence 12345788899999999999876431 1122 33677788999999998654433
No 113
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.27 E-value=4e-06 Score=88.40 Aligned_cols=124 Identities=19% Similarity=0.290 Sum_probs=77.3
Q ss_pred CCCC-CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc--eEEEEeCCHHHHHHHHcCCCC
Q psy11160 1 MVQT-ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI--QVTVVDKSEERIRQWNSNKLP 77 (598)
Q Consensus 1 m~~~-~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~~ 77 (598)
||++ .+||+|||+|.||.++|..|+. .|. ++.++|+++++.+....-
T Consensus 1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~---------------------------~~~~~el~L~D~~~~~~~g~~~D--- 50 (315)
T PRK00066 1 MMKKQHNKVVLVGDGAVGSSYAYALVN---------------------------QGIADELVIIDINKEKAEGDAMD--- 50 (315)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHh---------------------------cCCCCEEEEEeCCCchhHHHHHH---
Confidence 5655 4799999999999999999998 454 899999998876543321
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
+.+...-.....++ +++++ ++++||+||++...|.++..++.+ -..+...+++..+.+.++.++..+++..
T Consensus 51 -----l~~~~~~~~~~~i~-~~~~~-~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs- 122 (315)
T PRK00066 51 -----LSHAVPFTSPTKIY-AGDYS-DCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS- 122 (315)
T ss_pred -----HHhhccccCCeEEE-eCCHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc-
Confidence 10100000011233 45564 799999999999888765432211 1223445666667777766655554442
Q ss_pred CCchHHH
Q psy11160 157 TVPVRAA 163 (598)
Q Consensus 157 Tv~~~~~ 163 (598)
-|....
T Consensus 123 -NP~d~~ 128 (315)
T PRK00066 123 -NPVDIL 128 (315)
T ss_pred -CcHHHH
Confidence 444443
No 114
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=98.27 E-value=6.5e-06 Score=74.53 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCccccc-------c-c--cccCccccccchhhhHHH
Q psy11160 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGA-------K-F--LQASVGFGGSCFQKDILN 364 (598)
Q Consensus 295 ~~Ae~~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ri~~-------~-~--l~~~~gfgg~cl~KD~~~ 364 (598)
++|..+|+++|.+...++..+.|...++++.|+|++.+.++++..+.-++ . + -++.++|....+.||+.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l 80 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL 80 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence 57889999999999999999999999999999999999999998663221 1 1 146688999999999999
Q ss_pred HHHHHHHcCCh
Q psy11160 365 LVYICECLNLP 375 (598)
Q Consensus 365 L~~~a~~~G~~ 375 (598)
..+.|++.|++
T Consensus 81 ~~~~a~~~g~~ 91 (122)
T PF14833_consen 81 ALDLAKEAGVP 91 (122)
T ss_dssp HHHHHHHTT--
T ss_pred HHHHHHHcCCC
Confidence 99999999997
No 115
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.27 E-value=4.8e-06 Score=87.49 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=78.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||+|||+|.+|.++|..|+. .| ++|+++|+++++.+.+... +
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~---------------------------~g~~~ei~l~D~~~~~~~~~a~d--------L 45 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVN---------------------------QGIADELVLIDINEEKAEGEALD--------L 45 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------cCCCCEEEEEeCCcchhhHhHhh--------H
Confidence 489999999999999999998 56 6999999999987765431 2
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+............+.+++ .+++||+||++++.|..+..++.+ -..+...+++..+.|.++.++..+++. |-|...
T Consensus 46 ~~~~~~~~~~~~i~~~~~~-~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivv--sNP~d~ 122 (306)
T cd05291 46 EDALAFLPSPVKIKAGDYS-DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVA--SNPVDV 122 (306)
T ss_pred HHHhhccCCCeEEEcCCHH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--cChHHH
Confidence 1111100011122345554 689999999999888765432111 122344566666777776665544444 345554
Q ss_pred HHHHH
Q psy11160 163 AESIM 167 (598)
Q Consensus 163 ~~~~~ 167 (598)
.-.++
T Consensus 123 ~~~~~ 127 (306)
T cd05291 123 ITYVV 127 (306)
T ss_pred HHHHH
Confidence 43333
No 116
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.23 E-value=5.8e-06 Score=87.84 Aligned_cols=105 Identities=12% Similarity=0.197 Sum_probs=76.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..|++. .|.+|++||+++.... ..
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~--------------------------~g~~V~~~d~~~~~~~--~~----------- 186 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKG--------------------------YGSDVVAYDPFPNAKA--AT----------- 186 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc--------------------------CCCEEEEECCCccHhH--Hh-----------
Confidence 36899999999999999999540 5889999998764321 11
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
....+.++++++++||+|++++|..... ..+.. +...+.++++.++|+.|+...-.++
T Consensus 187 ---------~~~~~~~l~ell~~aDvIvl~lP~t~~t-----------~~li~--~~~l~~mk~gailIN~sRG~~vd~~ 244 (332)
T PRK08605 187 ---------YVDYKDTIEEAVEGADIVTLHMPATKYN-----------HYLFN--ADLFKHFKKGAVFVNCARGSLVDTK 244 (332)
T ss_pred ---------hccccCCHHHHHHhCCEEEEeCCCCcch-----------hhhcC--HHHHhcCCCCcEEEECCCCcccCHH
Confidence 1233457888999999999998765321 11211 3466788999999999999887777
Q ss_pred HHHHHH
Q psy11160 165 SIMNVL 170 (598)
Q Consensus 165 ~~~~~l 170 (598)
.+...+
T Consensus 245 aL~~aL 250 (332)
T PRK08605 245 ALLDAL 250 (332)
T ss_pred HHHHHH
Confidence 776633
No 117
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.20 E-value=8.3e-06 Score=85.24 Aligned_cols=91 Identities=11% Similarity=0.161 Sum_probs=67.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.||.++|..|.. .|++|+++++.....+....
T Consensus 17 KtVGIIG~GsIG~amA~nL~d---------------------------~G~~ViV~~r~~~s~~~A~~------------ 57 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRD---------------------------SGVEVVVGVRPGKSFEVAKA------------ 57 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHH---------------------------CcCEEEEEECcchhhHHHHH------------
Confidence 689999999999999999999 89999999876433332221
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv 158 (598)
.+... .+++++++.||+|++++|.+.. +.++ +.+.+.++++.+++..--.
T Consensus 58 -------~G~~v-~sl~Eaak~ADVV~llLPd~~t---------------~~V~~~eil~~MK~GaiL~f~hgf 108 (335)
T PRK13403 58 -------DGFEV-MSVSEAVRTAQVVQMLLPDEQQ---------------AHVYKAEVEENLREGQMLLFSHGF 108 (335)
T ss_pred -------cCCEE-CCHHHHHhcCCEEEEeCCChHH---------------HHHHHHHHHhcCCCCCEEEECCCc
Confidence 12232 3788899999999999986421 2333 5688999999988765443
No 118
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.20 E-value=5.4e-06 Score=87.62 Aligned_cols=119 Identities=14% Similarity=0.223 Sum_probs=76.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+.+||+|||+|.||..+|..++. .|+ +|+++|+++++.+.-.-.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~---------------------------~gl~~i~LvDi~~~~~~~~~ld-------- 49 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL---------------------------KNLGDVVLFDIVKNIPQGKALD-------- 49 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---------------------------CCCCeEEEEeCCCchhhHHHHH--------
Confidence 34799999999999999999998 674 899999999865321100
Q ss_pred hHHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCC-----CCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 83 LDEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFG-----NGKG-RAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~-----~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
+...... ....+++.++|++ ++++||+||++...|..+.. ++.+ -..+...+++.++.|.++.++..+++..
T Consensus 50 ~~~~~~~~~~~~~I~~~~d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~s 128 (321)
T PTZ00082 50 ISHSNVIAGSNSKVIGTNNYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVIT 128 (321)
T ss_pred HHhhhhccCCCeEEEECCCHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 0000000 0113567778885 89999999999877654321 0000 0224556777778888888666555554
Q ss_pred cCC
Q psy11160 156 STV 158 (598)
Q Consensus 156 STv 158 (598)
.++
T Consensus 129 NP~ 131 (321)
T PTZ00082 129 NPL 131 (321)
T ss_pred CcH
Confidence 333
No 119
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.20 E-value=7.5e-06 Score=86.22 Aligned_cols=120 Identities=11% Similarity=0.174 Sum_probs=78.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc---CCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS---NKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~---~~~~~~e~ 81 (598)
.+||+|||+|.||.++|..|+. ++..-++.++|+++++.+.... ...++.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~-------------------------~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~-- 55 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILA-------------------------KGLADELVLVDVVEDKLKGEAMDLQHGSAFL-- 55 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEEeCCccHHHHHHHHHHHhhccC--
Confidence 4699999999999999999988 2233589999998876654321 001111
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
....++.++|++ .+++||+||++...|.++..++.+ -..+...+++..+.|.++.+++.+++.. -|.
T Consensus 56 ---------~~~~v~~~~dy~-~~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~ 123 (312)
T cd05293 56 ---------KNPKIEADKDYS-VTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPV 123 (312)
T ss_pred ---------CCCEEEECCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChH
Confidence 012466678887 599999999999887765322111 1334556677777787776555555543 444
Q ss_pred HHH
Q psy11160 161 RAA 163 (598)
Q Consensus 161 ~~~ 163 (598)
...
T Consensus 124 d~~ 126 (312)
T cd05293 124 DIM 126 (312)
T ss_pred HHH
Confidence 443
No 120
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=98.20 E-value=8.1e-05 Score=76.30 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=54.0
Q ss_pred CceEEEEeCCHHHHHHHH-cCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchH
Q psy11160 55 NIQVTVVDKSEERIRQWN-SNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLK 133 (598)
Q Consensus 55 g~~v~~~d~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~ 133 (598)
.++|+++|++++.++... .|.. ....++ .++++++|+||+|||..
T Consensus 11 ~~~v~g~d~~~~~~~~a~~~g~~------------------~~~~~~-~~~~~~~DlvvlavP~~--------------- 56 (258)
T PF02153_consen 11 DVEVYGYDRDPETLEAALELGII------------------DEASTD-IEAVEDADLVVLAVPVS--------------- 56 (258)
T ss_dssp TSEEEEE-SSHHHHHHHHHTTSS------------------SEEESH-HHHGGCCSEEEE-S-HH---------------
T ss_pred CeEEEEEeCCHHHHHHHHHCCCe------------------eeccCC-HhHhcCCCEEEEcCCHH---------------
Confidence 389999999999988764 3321 233444 46899999999998642
Q ss_pred HHHHHHHHHHHHcCCCcEEEEecCCchHHHHHH
Q psy11160 134 YVEAAARMIAEIATDNKIVVEKSTVPVRAAESI 166 (598)
Q Consensus 134 ~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~ 166 (598)
.+..+++++.++++++++|++-++|--...+.+
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~ 89 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAM 89 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHH
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHH
Confidence 588899999999999999999888876555443
No 121
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.15 E-value=1.3e-05 Score=85.17 Aligned_cols=104 Identities=10% Similarity=0.128 Sum_probs=76.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. .|.+|++||+++..... ..
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~---------------------------~G~~V~~~d~~~~~~~~-~~----------- 190 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKG---------------------------FGMRILYYSRTRKPEAE-KE----------- 190 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEECCCCChhhH-HH-----------
Confidence 3689999999999999999988 78999999997543211 11
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.+.. ..++++.+++||+|++++|....+ ..+. -+.....++++.++|+.|+...-..+
T Consensus 191 --------~~~~-~~~l~ell~~aDiV~l~lP~t~~T-----------~~~i--~~~~~~~mk~ga~lIN~aRg~~vd~~ 248 (333)
T PRK13243 191 --------LGAE-YRPLEELLRESDFVSLHVPLTKET-----------YHMI--NEERLKLMKPTAILVNTARGKVVDTK 248 (333)
T ss_pred --------cCCE-ecCHHHHHhhCCEEEEeCCCChHH-----------hhcc--CHHHHhcCCCCeEEEECcCchhcCHH
Confidence 0122 246788899999999998754321 1121 23567788999999999998887776
Q ss_pred HHHHH
Q psy11160 165 SIMNV 169 (598)
Q Consensus 165 ~~~~~ 169 (598)
.+...
T Consensus 249 aL~~a 253 (333)
T PRK13243 249 ALVKA 253 (333)
T ss_pred HHHHH
Confidence 66653
No 122
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.14 E-value=1.7e-05 Score=83.64 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=69.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC-CHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK-SEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~-~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||+|.||.++|..|.+ .|++|+++++ ++++.+.+.+.
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~---------------------------sG~~Viv~~~~~~~~~~~a~~~--------- 46 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRD---------------------------SGLNVIVGLRKGGASWKKATED--------- 46 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHH---------------------------CCCeEEEEECcChhhHHHHHHC---------
Confidence 3689999999999999999999 7888877554 44455544321
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
++.. .+..+++++||+|+++||... ....+.+.|.+.++++.+|.+..-++...
T Consensus 47 ----------Gv~~-~s~~ea~~~ADiVvLaVpp~~--------------~~~~v~~ei~~~l~~g~iVs~aaG~~i~~ 100 (314)
T TIGR00465 47 ----------GFKV-GTVEEAIPQADLIMNLLPDEV--------------QHEVYEAEIQPLLKEGKTLGFSHGFNIHF 100 (314)
T ss_pred ----------CCEE-CCHHHHHhcCCEEEEeCCcHh--------------HHHHHHHHHHhhCCCCcEEEEeCCccHhh
Confidence 2333 346778999999999997321 23445667888888888887766665544
No 123
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.13 E-value=1.3e-05 Score=82.34 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=82.1
Q ss_pred EEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 8 ICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 8 I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
|+|||+ |.||..+|..|+. .| .+|+++|+++++++....-
T Consensus 1 I~IIGagG~vG~~ia~~l~~---------------------------~~~~~~~el~L~D~~~~~l~~~~~d-------- 45 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLAD---------------------------GSVLLAIELVLYDIDEEKLKGVAMD-------- 45 (263)
T ss_pred CEEECCCChHHHHHHHHHHh---------------------------CCCCcceEEEEEeCCcccchHHHHH--------
Confidence 689999 9999999999998 44 7999999998777654321
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.+........++++++|+.+++++||+||++...|..+...+.+ -..+.+.+++..+.|.++. ++.++++- |-|.+
T Consensus 46 l~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~-tNP~d 123 (263)
T cd00650 46 LQDAVEPLADIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV-SNPVD 123 (263)
T ss_pred HHHhhhhccCcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-cCcHH
Confidence 111111111246778888778999999999998776554321110 1224556777777777777 44444443 57776
Q ss_pred HHHHHHH
Q psy11160 162 AAESIMN 168 (598)
Q Consensus 162 ~~~~~~~ 168 (598)
..-.++.
T Consensus 124 ~~t~~~~ 130 (263)
T cd00650 124 IITYLVW 130 (263)
T ss_pred HHHHHHH
Confidence 6644443
No 124
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.13 E-value=1.2e-05 Score=75.29 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=71.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|+|+|.+|.+++..|++ .| ++|+++|+++++.+.+.+.....
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~---------------------------~g~~~v~v~~r~~~~~~~~~~~~~~~----- 66 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAE---------------------------LGAAKIVIVNRTLEKAKALAERFGEL----- 66 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCCEEEEEcCCHHHHHHHHHHHhhc-----
Confidence 4689999999999999999998 54 89999999999887765311000
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.......+..+.++++|+||+|+|.+.... .+.. +. ...++++++|++.||+|+.+
T Consensus 67 ---------~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~-------~~~~-~~------~~~~~~~~~v~D~~~~~~~~ 122 (155)
T cd01065 67 ---------GIAIAYLDLEELLAEADLIINTTPVGMKPG-------DELP-LP------PSLLKPGGVVYDVVYNPLET 122 (155)
T ss_pred ---------ccceeecchhhccccCCEEEeCcCCCCCCC-------CCCC-CC------HHHcCCCCEEEEcCcCCCCC
Confidence 000123455666899999999998765300 0000 00 12357899999999997765
No 125
>PRK07574 formate dehydrogenase; Provisional
Probab=98.13 E-value=2.1e-05 Score=85.00 Aligned_cols=105 Identities=9% Similarity=0.132 Sum_probs=77.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..|.. .|.+|.+||++....+....
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~---------------------------fG~~V~~~dr~~~~~~~~~~------------ 233 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKP---------------------------FDVKLHYTDRHRLPEEVEQE------------ 233 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEECCCCCchhhHhh------------
Confidence 689999999999999999988 78999999987532221111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
.+.+...++++++++||+|++++|-.. +...+. -++....++++.++|+.|....-..+.
T Consensus 234 -------~g~~~~~~l~ell~~aDvV~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~A 293 (385)
T PRK07574 234 -------LGLTYHVSFDSLVSVCDVVTIHCPLHP-----------ETEHLF--DADVLSRMKRGSYLVNTARGKIVDRDA 293 (385)
T ss_pred -------cCceecCCHHHHhhcCCEEEEcCCCCH-----------HHHHHh--CHHHHhcCCCCcEEEECCCCchhhHHH
Confidence 123344578889999999999986432 222222 146777899999999999887777666
Q ss_pred HHHH
Q psy11160 166 IMNV 169 (598)
Q Consensus 166 ~~~~ 169 (598)
+.+.
T Consensus 294 L~~A 297 (385)
T PRK07574 294 VVRA 297 (385)
T ss_pred HHHH
Confidence 6553
No 126
>PLN03139 formate dehydrogenase; Provisional
Probab=98.10 E-value=2.4e-05 Score=84.55 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=77.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..|.. .|.+|.+||++....+....
T Consensus 199 gktVGIVG~G~IG~~vA~~L~a---------------------------fG~~V~~~d~~~~~~~~~~~----------- 240 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKP---------------------------FNCNLLYHDRLKMDPELEKE----------- 240 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHH---------------------------CCCEEEEECCCCcchhhHhh-----------
Confidence 3689999999999999999998 78999999987432222111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.+.....++++.+++||+|++++|... +...+. -+.+...++++.++|+.+....-..+
T Consensus 241 --------~g~~~~~~l~ell~~sDvV~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~ 299 (386)
T PLN03139 241 --------TGAKFEEDLDAMLPKCDVVVINTPLTE-----------KTRGMF--NKERIAKMKKGVLIVNNARGAIMDTQ 299 (386)
T ss_pred --------cCceecCCHHHHHhhCCEEEEeCCCCH-----------HHHHHh--CHHHHhhCCCCeEEEECCCCchhhHH
Confidence 123344678889999999999987542 222222 25677889999999998887776666
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+.+
T Consensus 300 AL~~ 303 (386)
T PLN03139 300 AVAD 303 (386)
T ss_pred HHHH
Confidence 5555
No 127
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.08 E-value=3.2e-05 Score=80.78 Aligned_cols=128 Identities=23% Similarity=0.289 Sum_probs=83.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+||+|||+|.||.++|..|.. +..+.++.++|+++++.+-... ++.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-------------------------~~~~~el~LiDi~~~~~~G~a~--------DL~~ 47 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-------------------------QGLGSELVLIDINEEKAEGVAL--------DLSH 47 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-------------------------ccccceEEEEEcccccccchhc--------chhh
Confidence 589999999999999999976 2245699999999554432110 1111
Q ss_pred HHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 86 VVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
...-. ...++..+.+++ ++++||+|+|+.+-|.++..++.+ ...+.+.+++..++|.+..++..++| -|-|..+.
T Consensus 48 ~~~~~~~~~~i~~~~~y~-~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlV--vtNPvD~~ 124 (313)
T COG0039 48 AAAPLGSDVKITGDGDYE-DLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLV--VTNPVDIL 124 (313)
T ss_pred cchhccCceEEecCCChh-hhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEE--ecCcHHHH
Confidence 10000 012233333465 799999999999888887654322 23456677777888888887666655 46777777
Q ss_pred HHHHHH
Q psy11160 164 ESIMNV 169 (598)
Q Consensus 164 ~~~~~~ 169 (598)
-.++..
T Consensus 125 ty~~~k 130 (313)
T COG0039 125 TYIAMK 130 (313)
T ss_pred HHHHHH
Confidence 666653
No 128
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.08 E-value=1.5e-05 Score=84.16 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=75.2
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+.+||+|||+|.||..+|..++. .| .+++++|+++++.+...-.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~---------------------------~~~~~l~L~Di~~~~~~g~~lD-------- 48 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ---------------------------KNLGDVVLYDVIKGVPQGKALD-------- 48 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH---------------------------CCCCeEEEEECCCccchhHHHH--------
Confidence 45799999999999999999988 55 5899999998765431100
Q ss_pred hHHHHhh-hcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 83 LDEVVKK-TRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 83 ~~~~~~~-~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+...... ....+++.++|++ ++++||+||++...|.++..++.+ -..+...+++..+.|.++.++..+++...++
T Consensus 49 l~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~ 125 (319)
T PTZ00117 49 LKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL 125 (319)
T ss_pred HhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH
Confidence 0000000 0112456667887 899999999999766543221100 1112345667778888877665566653333
No 129
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.07 E-value=1.1e-05 Score=84.60 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=69.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~ 83 (598)
.|||+|+|+|.||+-+|..|++ .|++|++++++.++++.+++ +...+...+-
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~---------------------------~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~ 54 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLAR---------------------------AGLPVRLILRDRQRLAAYQQAGGLTLVEQGQ 54 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHh---------------------------CCCCeEEEEechHHHHHHhhcCCeEEeeCCc
Confidence 3799999999999999999999 89999999999999998874 3232222111
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
... ..... .+. +.....|+||+||-+. .+.++++.+.+.+.+++.|+
T Consensus 55 ~~~------~~~~~-~~~-~~~~~~D~viv~vK~~---------------~~~~al~~l~~~l~~~t~vv 101 (305)
T PRK05708 55 ASL------YAIPA-ETA-DAAEPIHRLLLACKAY---------------DAEPAVASLAHRLAPGAELL 101 (305)
T ss_pred cee------eccCC-CCc-ccccccCEEEEECCHH---------------hHHHHHHHHHhhCCCCCEEE
Confidence 000 00111 111 1245789999998543 35678889999998887654
No 130
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.06 E-value=7e-06 Score=76.60 Aligned_cols=98 Identities=23% Similarity=0.284 Sum_probs=67.6
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVV 87 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~ 87 (598)
|+|+|+|.||..+|..|++ .|++|+++++++ +.+.+++....+..+.-++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~---------------------------~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~- 51 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ---------------------------AGHDVTLVSRSP-RLEAIKEQGLTITGPDGDET- 51 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH---------------------------TTCEEEEEESHH-HHHHHHHHCEEEEETTEEEE-
T ss_pred CEEECcCHHHHHHHHHHHH---------------------------CCCceEEEEccc-cHHhhhheeEEEEeccccee-
Confidence 7899999999999999999 899999999999 88887754333322210000
Q ss_pred hhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 88 KKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
. .......+..+....+|+||+||... .++++++.+.+.+.+++.|+
T Consensus 52 ---~-~~~~~~~~~~~~~~~~D~viv~vKa~---------------~~~~~l~~l~~~~~~~t~iv 98 (151)
T PF02558_consen 52 ---V-QPPIVISAPSADAGPYDLVIVAVKAY---------------QLEQALQSLKPYLDPNTTIV 98 (151)
T ss_dssp ---E-EEEEEESSHGHHHSTESEEEE-SSGG---------------GHHHHHHHHCTGEETTEEEE
T ss_pred ---c-ccccccCcchhccCCCcEEEEEeccc---------------chHHHHHHHhhccCCCcEEE
Confidence 0 01122233324578899999998553 35778888999999885444
No 131
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.02 E-value=2.2e-05 Score=82.49 Aligned_cols=98 Identities=21% Similarity=0.289 Sum_probs=72.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
|||+|+|+|.||+-++..|++ .|++|+++-+++. ++++++....+.+.+- +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~---------------------------~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~ 51 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAK---------------------------AGHDVTLLVRSRR-LEALKKKGLRIEDEGG-N 51 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHh---------------------------CCCeEEEEecHHH-HHHHHhCCeEEecCCC-c
Confidence 699999999999999999999 7888999888776 8888875444433221 0
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
. .....+.+..+....+|+||++|.+. .+.+++..+.+.++++++|+
T Consensus 52 ~------~~~~~~~~~~~~~~~~Dlviv~vKa~---------------q~~~al~~l~~~~~~~t~vl 98 (307)
T COG1893 52 F------TTPVVAATDAEALGPADLVIVTVKAY---------------QLEEALPSLAPLLGPNTVVL 98 (307)
T ss_pred c------ccccccccChhhcCCCCEEEEEeccc---------------cHHHHHHHhhhcCCCCcEEE
Confidence 0 01122333334677999999998654 36888999999999998765
No 132
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.00 E-value=4.8e-05 Score=78.56 Aligned_cols=72 Identities=10% Similarity=0.134 Sum_probs=54.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+||+|||+|.||..++..|.. ...+++++ ++|+++++.+.+.+..
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~-------------------------~~~~~el~aV~dr~~~~a~~~a~~~-------- 52 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDR-------------------------GLPGLTLSAVAVRDPQRHADFIWGL-------- 52 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHh-------------------------cCCCeEEEEEECCCHHHHHHHHHhc--------
Confidence 3789999999999999999986 00467776 7899999887765321
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
+.....+++++.++++|+|++|+|+.
T Consensus 53 ---------g~~~~~~~~eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 53 ---------RRPPPVVPLDQLATHADIVVEAAPAS 78 (271)
T ss_pred ---------CCCcccCCHHHHhcCCCEEEECCCcH
Confidence 01123567777888999999998764
No 133
>KOG2304|consensus
Probab=98.00 E-value=5.3e-06 Score=81.38 Aligned_cols=110 Identities=23% Similarity=0.302 Sum_probs=81.1
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-------
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK------- 75 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~------- 75 (598)
+.+.+|+|||+|.||+.+|.+-+. .|++|+++|.|+..+.+..+++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~---------------------------sg~~V~l~d~~~~aL~~A~~~I~~sl~rv 61 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAAT---------------------------SGLNVWLVDANEDALSRATKAISSSLKRV 61 (298)
T ss_pred ccccceEEEcccccchhHHHHHHh---------------------------cCCceEEecCCHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999 8999999999998877654332
Q ss_pred ---CCCC-CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcE
Q psy11160 76 ---LPIY-EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKI 151 (598)
Q Consensus 76 ---~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 151 (598)
.... +.++++++.... .+++.+++..+++++||+||-++-.. ++.=+..++.|-...+++++
T Consensus 62 akKk~~~~~~~~~e~v~~~l-~ri~~~tnv~~~v~dadliiEAivEn-------------~diK~~lF~~l~~~ak~~~i 127 (298)
T KOG2304|consen 62 AKKKKADDPVALEEFVDDTL-DRIKTSTNVSDAVSDADLIIEAIVEN-------------LDIKRKLFKDLDKIAKSSTI 127 (298)
T ss_pred HhhcccCChhhHHHHHHHHH-HHHHHcCCHHHhhhhhHHHHHHHHHh-------------HHHHHHHHHHHHhhcccceE
Confidence 1111 223555554432 35778899999999999999887432 22335677888888888877
Q ss_pred EE
Q psy11160 152 VV 153 (598)
Q Consensus 152 vv 153 (598)
+.
T Consensus 128 l~ 129 (298)
T KOG2304|consen 128 LA 129 (298)
T ss_pred Ee
Confidence 64
No 134
>PLN02602 lactate dehydrogenase
Probab=98.00 E-value=3.5e-05 Score=82.28 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=76.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
+||+|||+|.||.++|..|+. ++..-++.++|+++++.+....- +.+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-------------------------~~l~~el~LiDi~~~~~~g~a~D--------L~~ 84 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-------------------------QDLADELALVDVNPDKLRGEMLD--------LQH 84 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-------------------------CCCCCEEEEEeCCCchhhHHHHH--------HHh
Confidence 699999999999999999987 11224899999998776543310 111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
...-.....++.+++++ .+++||+||++...|.++..++.+ -..+...+++..+.|.++.+++.+++.. -|....-
T Consensus 85 ~~~~~~~~~i~~~~dy~-~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt--NPvdv~t 161 (350)
T PLN02602 85 AAAFLPRTKILASTDYA-VTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS--NPVDVLT 161 (350)
T ss_pred hhhcCCCCEEEeCCCHH-HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CchHHHH
Confidence 10000012345456776 599999999998877665332111 1223455666677777766555555543 4554443
Q ss_pred HH
Q psy11160 165 SI 166 (598)
Q Consensus 165 ~~ 166 (598)
.+
T Consensus 162 ~~ 163 (350)
T PLN02602 162 YV 163 (350)
T ss_pred HH
Confidence 33
No 135
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.99 E-value=0.00025 Score=73.31 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCce
Q psy11160 16 VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNL 95 (598)
Q Consensus 16 vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 95 (598)
||+.+|..|++ .|++|++++++ ++.+.+++....+..++.. . .. ...
T Consensus 2 iG~~~a~~L~~---------------------------~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~--~--~~-~~~ 48 (293)
T TIGR00745 2 VGSLYGAYLAR---------------------------AGHDVTLLARG-EQLEALNQEGLRIVSLGGE--F--QF-RPV 48 (293)
T ss_pred chHHHHHHHHh---------------------------CCCcEEEEecH-HHHHHHHHCCcEEEecCCc--E--EE-ccc
Confidence 79999999999 89999999997 7788887644444322211 0 00 023
Q ss_pred EEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 96 FFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 96 ~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
.+++++++ +..+|+||+||++. .++++++.+.+.+.++++|+.
T Consensus 49 ~~~~~~~~-~~~~D~iiv~vKs~---------------~~~~~l~~l~~~l~~~~~iv~ 91 (293)
T TIGR00745 49 SAATSPEE-LPPADLVIITVKAY---------------QTEEAAALLLPLIGKNTKVLF 91 (293)
T ss_pred ccccChhh-cCCCCEEEEeccch---------------hHHHHHHHhHhhcCCCCEEEE
Confidence 44556654 67899999998764 367888899999988877664
No 136
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.97 E-value=6.2e-05 Score=77.51 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=52.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+|.||..++..+... ..+++ +.++|+++++.+.+.+..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~-------------------------~~~~elv~v~d~~~~~a~~~a~~~--------- 47 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSG-------------------------RINAELYAFYDRNLEKAENLASKT--------- 47 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcC-------------------------CCCeEEEEEECCCHHHHHHHHHhc---------
Confidence 6999999999999999998870 01355 567999999988776421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
+....+++++.+.++|+|++|+|.
T Consensus 48 ---------~~~~~~~~~ell~~~DvVvi~a~~ 71 (265)
T PRK13304 48 ---------GAKACLSIDELVEDVDLVVECASV 71 (265)
T ss_pred ---------CCeeECCHHHHhcCCCEEEEcCCh
Confidence 123557788777899999999753
No 137
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.96 E-value=0.001 Score=66.74 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=78.7
Q ss_pred CceEEEECCCh--------------------hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGY--------------------VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~--------------------vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
+|||+|.|+|+ -|..||..||. +||+|++.|.|
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAe---------------------------AGHDVVLaePn 53 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAE---------------------------AGHDVVLAEPN 53 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHH---------------------------cCCcEEeecCC
Confidence 47999999994 47888999999 99999999987
Q ss_pred HHHHHHHHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHH
Q psy11160 65 EERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAE 144 (598)
Q Consensus 65 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~ 144 (598)
.+-.+. +..++.-+.+.+.++|..++++.+++.++- ||+.+ ..-.+++.|.+
T Consensus 54 ~d~~dd--------------~~w~~vedAGV~vv~dD~eaa~~~Ei~VLF--TPFGk------------~T~~Iarei~~ 105 (340)
T COG4007 54 RDIMDD--------------EHWKRVEDAGVEVVSDDAEAAEHGEIHVLF--TPFGK------------ATFGIAREILE 105 (340)
T ss_pred ccccCH--------------HHHHHHHhcCcEEecCchhhhhcceEEEEe--cccch------------hhHHHHHHHHh
Confidence 543321 111222235678888888899999999998 56632 34567889999
Q ss_pred HcCCCcEEEEecCCchHHH
Q psy11160 145 IATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 145 ~~~~~~ivv~~STv~~~~~ 163 (598)
+++.|.+|....|+||-..
T Consensus 106 hvpEgAVicnTCT~sp~vL 124 (340)
T COG4007 106 HVPEGAVICNTCTVSPVVL 124 (340)
T ss_pred hCcCCcEecccccCchhHH
Confidence 9999999999999988543
No 138
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.96 E-value=3.8e-05 Score=80.73 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=76.6
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH----cCCCCCCCCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN----SNKLPIYEPG 82 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~----~~~~~~~e~~ 82 (598)
||+|||+|.||.++|..|+. ++..-++.++|+++++.+... ... ++..+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-------------------------~~~~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~- 53 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-------------------------LGLFSEIVLIDVNEGVAEGEALDFHHAT-ALTYS- 53 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEEeCCcchhhHHHHHHHhhh-ccCCC-
Confidence 79999999999999999988 112248999999877655322 111 11000
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCC--CC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNG--KG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~--~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
....++ +.++ +++++||+||++...|.++..++ .+ -..+.+.+++....|.++.+.+.+++ -|-|
T Consensus 54 --------~~~~i~-~~~y-~~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~iv--vsNP 121 (307)
T cd05290 54 --------TNTKIR-AGDY-DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIIL--ITNP 121 (307)
T ss_pred --------CCEEEE-ECCH-HHhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--ecCc
Confidence 001233 4566 48999999999998877654321 00 12345566677777777775554444 4566
Q ss_pred hHHHHHHHH
Q psy11160 160 VRAAESIMN 168 (598)
Q Consensus 160 ~~~~~~~~~ 168 (598)
..+.-.++.
T Consensus 122 vDv~t~~~~ 130 (307)
T cd05290 122 LDIAVYIAA 130 (307)
T ss_pred HHHHHHHHH
Confidence 666555554
No 139
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.95 E-value=8.9e-05 Score=81.42 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=60.9
Q ss_pred ceEEEECCChhHHHHHH--HHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCS--VIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||+|||+|.||.+++. .++.. +. + +|++|++||+++++++......
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~-~~--------------------~--~g~eV~L~Did~e~l~~~~~~~-------- 49 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKT-PE--------------------L--SGSTIALMDIDEERLETVEILA-------- 49 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcC-CC--------------------C--CCCEEEEECCCHHHHHHHHHHH--------
Confidence 48999999999999877 45541 01 1 6899999999999988765421
Q ss_pred HHHHhhh-cCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
...+... ...+++.|+|+.+++++||+||++++...
T Consensus 50 ~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai~~~~ 86 (423)
T cd05297 50 KKIVEELGAPLKIEATTDRREALDGADFVINTIQVGG 86 (423)
T ss_pred HHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEeeEecC
Confidence 1222211 12467889999999999999999998754
No 140
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.93 E-value=5.8e-05 Score=71.27 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=63.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-HHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-RIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||.|..|...|.+|.+ .|.+|++-.+... ..+..++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrD---------------------------SG~~V~Vglr~~s~s~~~A~~---------- 46 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRD---------------------------SGVNVIVGLREGSASWEKAKA---------- 46 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHH---------------------------CC-EEEEEE-TTCHHHHHHHH----------
T ss_pred CCEEEEECCChHHHHHHHHHHh---------------------------CCCCEEEEecCCCcCHHHHHH----------
Confidence 4689999999999999999999 8999998888755 4444332
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv 158 (598)
.+++ ..+..++++.||+|++.+|.. .-.++. ++|.+.++++++++...-.
T Consensus 47 ---------~Gf~-v~~~~eAv~~aDvV~~L~PD~---------------~q~~vy~~~I~p~l~~G~~L~fahGf 97 (165)
T PF07991_consen 47 ---------DGFE-VMSVAEAVKKADVVMLLLPDE---------------VQPEVYEEEIAPNLKPGATLVFAHGF 97 (165)
T ss_dssp ---------TT-E-CCEHHHHHHC-SEEEE-S-HH---------------HHHHHHHHHHHHHS-TT-EEEESSSH
T ss_pred ---------CCCe-eccHHHHHhhCCEEEEeCChH---------------HHHHHHHHHHHhhCCCCCEEEeCCcc
Confidence 1233 356788999999999997643 234454 7899999999999876544
No 141
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.93 E-value=3.5e-05 Score=80.25 Aligned_cols=95 Identities=9% Similarity=0.188 Sum_probs=71.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~~ 84 (598)
++|+|+|+|.+|..+|..|.. .|.+|+++++++++.+.+.+ +..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~---------------------------~G~~V~v~~R~~~~~~~~~~~g~~-------- 196 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSA---------------------------LGARVFVGARSSADLARITEMGLI-------- 196 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHCCCe--------
Confidence 689999999999999999998 78999999999987766542 211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.....++.+.++++|+||.++|.+.- -+...+.++++.++++.++.|-+|-
T Consensus 197 ----------~~~~~~l~~~l~~aDiVint~P~~ii------------------~~~~l~~~k~~aliIDlas~Pg~td 247 (287)
T TIGR02853 197 ----------PFPLNKLEEKVAEIDIVINTIPALVL------------------TADVLSKLPKHAVIIDLASKPGGTD 247 (287)
T ss_pred ----------eecHHHHHHHhccCCEEEECCChHHh------------------CHHHHhcCCCCeEEEEeCcCCCCCC
Confidence 01123456678999999999865421 1234566788999999999988774
No 142
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=3.3e-05 Score=80.36 Aligned_cols=75 Identities=25% Similarity=0.398 Sum_probs=60.2
Q ss_pred CceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||.| .||.|||..|.+ .|+.|++|++.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~---------------------------~gatVtv~~~~------------------- 192 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQ---------------------------AHCSVTVVHSR------------------- 192 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHH---------------------------CCCEEEEECCC-------------------
Confidence 3689999996 999999999999 89999999753
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
+.++++.+++||+||.+++.|. .+... .+++|.+||+.|+-.
T Consensus 193 --------------t~~l~e~~~~ADIVIsavg~~~--------------~v~~~------~ik~GaiVIDvgin~ 234 (301)
T PRK14194 193 --------------STDAKALCRQADIVVAAVGRPR--------------LIDAD------WLKPGAVVIDVGINR 234 (301)
T ss_pred --------------CCCHHHHHhcCCEEEEecCChh--------------cccHh------hccCCcEEEEecccc
Confidence 1256778899999999998763 12222 278999999988654
No 143
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.88 E-value=5.7e-05 Score=79.23 Aligned_cols=102 Identities=11% Similarity=0.177 Sum_probs=74.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|.+|++||++... .+ .
T Consensus 122 gktvgIiG~G~IG~~vA~~l~a---------------------------fG~~V~~~~r~~~~-----~~--------~- 160 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKA---------------------------FGMNIYAYTRSYVN-----DG--------I- 160 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEECCCCcc-----cC--------c-
Confidence 3689999999999999987776 68999999987311 11 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.....++++++++||+|++++|....+ ..+. -+.....++++.++|+.|+.++-..+
T Consensus 161 ----------~~~~~~l~ell~~aDiv~~~lp~t~~T-----------~~li--~~~~l~~mk~ga~lIN~sRG~~vd~~ 217 (303)
T PRK06436 161 ----------SSIYMEPEDIMKKSDFVLISLPLTDET-----------RGMI--NSKMLSLFRKGLAIINVARADVVDKN 217 (303)
T ss_pred ----------ccccCCHHHHHhhCCEEEECCCCCchh-----------hcCc--CHHHHhcCCCCeEEEECCCccccCHH
Confidence 011246888999999999998754321 1111 24566778999999999999887777
Q ss_pred HHHHHH
Q psy11160 165 SIMNVL 170 (598)
Q Consensus 165 ~~~~~l 170 (598)
.+.+.|
T Consensus 218 aL~~aL 223 (303)
T PRK06436 218 DMLNFL 223 (303)
T ss_pred HHHHHH
Confidence 766643
No 144
>PRK05442 malate dehydrogenase; Provisional
Probab=97.87 E-value=0.0001 Score=78.04 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH--HHHHHHcCCCCC
Q psy11160 2 VQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE--RIRQWNSNKLPI 78 (598)
Q Consensus 2 ~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~--~~~~~~~~~~~~ 78 (598)
|+..+||+|||+ |.||.++|..|+.+ .+.++. .-.++.++|+++. +.+....
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~-------------------~~~~~~-~~~el~LiDi~~~~~~~~g~a~----- 55 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASG-------------------DMLGKD-QPVILQLLEIPPALKALEGVVM----- 55 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhh-------------------hhcCCC-CccEEEEEecCCcccccceeeh-----
Confidence 455679999998 99999999988871 000000 1128999999543 2321110
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
++.+...... .+.+.+++..+++++||+||++...|.++..++.+ -..+.+.+++....|.++.+++.+++.-|
T Consensus 56 ---Dl~~~~~~~~-~~~~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs- 130 (326)
T PRK05442 56 ---ELDDCAFPLL-AGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG- 130 (326)
T ss_pred ---hhhhhhhhhc-CCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC-
Confidence 1111110000 12344445556899999999998877655332111 12234566777777777775555555544
Q ss_pred CchHHHHHHH
Q psy11160 158 VPVRAAESIM 167 (598)
Q Consensus 158 v~~~~~~~~~ 167 (598)
-|....-.++
T Consensus 131 NPvDv~t~v~ 140 (326)
T PRK05442 131 NPANTNALIA 140 (326)
T ss_pred CchHHHHHHH
Confidence 5555554444
No 145
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.78 E-value=0.00029 Score=62.85 Aligned_cols=71 Identities=20% Similarity=0.364 Sum_probs=54.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
+||+|||+|.+|......+.. ...+.+++ ++|+++++.+.+.+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~-------------------------~~~~~~v~~v~d~~~~~~~~~~~~---------- 45 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLR-------------------------SSPDFEVVAVCDPDPERAEAFAEK---------- 45 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHH-------------------------TTTTEEEEEEECSSHHHHHHHHHH----------
T ss_pred CEEEEECCcHHHHHHHHHHHh-------------------------cCCCcEEEEEEeCCHHHHHHHHHH----------
Confidence 489999999999999988887 11456665 789999999887532
Q ss_pred HHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
.++...+|+++.++ +.|+|+|++|+..
T Consensus 46 --------~~~~~~~~~~~ll~~~~~D~V~I~tp~~~ 74 (120)
T PF01408_consen 46 --------YGIPVYTDLEELLADEDVDAVIIATPPSS 74 (120)
T ss_dssp --------TTSEEESSHHHHHHHTTESEEEEESSGGG
T ss_pred --------hcccchhHHHHHHHhhcCCEEEEecCCcc
Confidence 12346788888887 7899999987653
No 146
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.77 E-value=9.2e-05 Score=78.04 Aligned_cols=94 Identities=10% Similarity=0.144 Sum_probs=66.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..|.. .|++|.+||++..... +..
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~a---------------------------fG~~V~~~~~~~~~~~------------~~~- 176 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQT---------------------------WGFPLRCWSRSRKSWP------------GVQ- 176 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCCCCCC------------Cce-
Confidence 689999999999999999998 7999999998653221 110
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
......++++++++||+|++++|... +...+. -+.....++++.++|+.+--+.
T Consensus 177 --------~~~~~~~l~e~l~~aDvvv~~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~v 230 (312)
T PRK15469 177 --------SFAGREELSAFLSQTRVLINLLPNTP-----------ETVGII--NQQLLEQLPDGAYLLNLARGVH 230 (312)
T ss_pred --------eecccccHHHHHhcCCEEEECCCCCH-----------HHHHHh--HHHHHhcCCCCcEEEECCCccc
Confidence 01112467889999999999987532 122222 2456777999999998654433
No 147
>PRK15076 alpha-galactosidase; Provisional
Probab=97.77 E-value=0.00023 Score=78.28 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=58.3
Q ss_pred ceEEEECCChhHHHHHH--HHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCS--VIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||+|||+|.||.+.+. .++. +.. + ++.+|+++|+++++.+....- +
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~-~~~--------------------l--~~~evvLvDid~er~~~~~~l--------~ 50 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILS-VPA--------------------L--RDAEIALMDIDPERLEESEIV--------A 50 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhh-Ccc--------------------C--CCCEEEEECCCHHHHHHHHHH--------H
Confidence 69999999999988776 5553 111 1 678999999999998753211 1
Q ss_pred HHHHhhh-cCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
...+... ...+++.|+|..+++++||+||+++..+
T Consensus 51 ~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ti~vg 86 (431)
T PRK15076 51 RKLAESLGASAKITATTDRREALQGADYVINAIQVG 86 (431)
T ss_pred HHHHHhcCCCeEEEEECCHHHHhCCCCEEeEeeeeC
Confidence 1122211 1246788999888999999999999775
No 148
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.76 E-value=0.00013 Score=82.24 Aligned_cols=103 Identities=10% Similarity=0.052 Sum_probs=73.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. .|.+|++||++...-.....
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~---------------------------fG~~V~~~d~~~~~~~~~~~----------- 181 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKA---------------------------FGMKVIAYDPYISPERAAQL----------- 181 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEECCCCChhHHHhc-----------
Confidence 3689999999999999999998 79999999985321111111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
+.... ++++.+++||+|++++|...... .+. -......++++.++|+.|....=..+
T Consensus 182 ---------g~~~~-~l~ell~~aDiV~l~lP~t~~t~-----------~li--~~~~l~~mk~ga~lIN~aRG~~vde~ 238 (526)
T PRK13581 182 ---------GVELV-SLDELLARADFITLHTPLTPETR-----------GLI--GAEELAKMKPGVRIINCARGGIIDEA 238 (526)
T ss_pred ---------CCEEE-cHHHHHhhCCEEEEccCCChHhh-----------cCc--CHHHHhcCCCCeEEEECCCCceeCHH
Confidence 12333 68889999999999987643211 121 14567788999999998887766665
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+..
T Consensus 239 aL~~ 242 (526)
T PRK13581 239 ALAE 242 (526)
T ss_pred HHHH
Confidence 5554
No 149
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.75 E-value=0.0003 Score=68.00 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=65.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. -|.+|++||++.........
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~---------------------------fG~~V~~~d~~~~~~~~~~~----------- 77 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKA---------------------------FGMRVIGYDRSPKPEEGADE----------- 77 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHH---------------------------TT-EEEEEESSCHHHHHHHH-----------
T ss_pred CCEEEEEEEcCCcCeEeeeeec---------------------------CCceeEEecccCChhhhccc-----------
Confidence 3689999999999999999998 78999999999876652222
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
... -..++++.++.||+|++++|-...+.+ ..+ +.....++++.++|+.+-
T Consensus 78 --------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~-----li~--------~~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 78 --------FGV-EYVSLDELLAQADIVSLHLPLTPETRG-----LIN--------AEFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp --------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTT-----SBS--------HHHHHTSTTTEEEEESSS
T ss_pred --------ccc-eeeehhhhcchhhhhhhhhccccccce-----eee--------eeeeeccccceEEEeccc
Confidence 123 345788899999999999874322211 222 345567899999998554
No 150
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.75 E-value=9.8e-05 Score=77.62 Aligned_cols=115 Identities=17% Similarity=0.264 Sum_probs=72.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
|||+|||+ |.||.++|..|+. .+ .+++++|++ +. +|.. .+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~---------------------------~~~~~elvLiDi~--~a----~g~a----lD 43 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKL---------------------------NPLVSELALYDIV--NT----PGVA----AD 43 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHh---------------------------CCCCcEEEEEecC--cc----ceee----hH
Confidence 59999999 9999999999988 44 589999998 22 1211 00
Q ss_pred hHHHHhhhcCCceEEe-c--CHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 83 LDEVVKKTRDVNLFFS-T--DIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~--~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+.+. .....++.+ . |+.+++++||+||++.+.|.++..++.+ -..+.+.+++..+.|.++.++..+++. |-
T Consensus 44 L~~~---~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivv--tN 118 (310)
T cd01337 44 LSHI---NTPAKVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILII--SN 118 (310)
T ss_pred hHhC---CCcceEEEecCCCchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc--cC
Confidence 1110 011245543 3 3346899999999999988766443211 223455667777777777554444454 44
Q ss_pred chHH
Q psy11160 159 PVRA 162 (598)
Q Consensus 159 ~~~~ 162 (598)
|...
T Consensus 119 PvDv 122 (310)
T cd01337 119 PVNS 122 (310)
T ss_pred chhh
Confidence 4444
No 151
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.73 E-value=0.00038 Score=73.66 Aligned_cols=130 Identities=14% Similarity=0.162 Sum_probs=77.2
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH--HHHHH----HHcCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE--ERIRQ----WNSNKLP 77 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~--~~~~~----~~~~~~~ 77 (598)
-.||+|||+ |.||.++|..|..+ +-|. .. ...+++++|+++ ++.+. +.....+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~----------------~~~~---~~-~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~ 62 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASG----------------ELFG---KD-QPVVLHLLDIPPAMKALEGVAMELEDCAFP 62 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC----------------Cccc---CC-CccEEEEEecCCcccccchHHHHHhhcccc
Confidence 369999999 99999999999871 0000 00 123899999964 22322 2221111
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
. . .+...+++..+++++||+||++.+.|.++..++.+ -..+.+.+++....|.++.+++.+++.-
T Consensus 63 ~------------~-~~~~i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv- 128 (323)
T TIGR01759 63 L------------L-AGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV- 128 (323)
T ss_pred c------------c-CCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-
Confidence 1 0 12233344446899999999999887665332111 1223556777778888887745555443
Q ss_pred CCchHHHHHHHH
Q psy11160 157 TVPVRAAESIMN 168 (598)
Q Consensus 157 Tv~~~~~~~~~~ 168 (598)
|-|....-.++.
T Consensus 129 sNPvDv~t~v~~ 140 (323)
T TIGR01759 129 GNPANTNALIAS 140 (323)
T ss_pred CCcHHHHHHHHH
Confidence 466666555544
No 152
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.72 E-value=0.00015 Score=76.72 Aligned_cols=129 Identities=14% Similarity=0.184 Sum_probs=74.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH--HHH----HHcCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER--IRQ----WNSNKLPI 78 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~----~~~~~~~~ 78 (598)
+||+|||+ |.||.++|..|+.+ .+.++. .-.++.++|++++. ++. +.....++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-------------------~~~~~~-~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~ 62 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-------------------EMFGPD-QPVILQLLELPQALKALEGVAMELEDCAFPL 62 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-------------------cccCCC-CceEEEEEecCCcccccceeehhhhhccccc
Confidence 69999999 99999999999871 000000 01289999995432 221 12111111
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
. .+...+++..+++++||+||++...|.++..++.+ -..+.+.+++....|.++.+++.+++.- |
T Consensus 63 ------------~-~~~~i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-s 128 (322)
T cd01338 63 ------------L-AEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVV-G 128 (322)
T ss_pred ------------c-CceEEecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-c
Confidence 0 12334444446899999999999887665332111 1223556777777777777544444443 3
Q ss_pred CchHHHHHHHH
Q psy11160 158 VPVRAAESIMN 168 (598)
Q Consensus 158 v~~~~~~~~~~ 168 (598)
-|....-.++.
T Consensus 129 NPvD~~t~~~~ 139 (322)
T cd01338 129 NPCNTNALIAM 139 (322)
T ss_pred CcHHHHHHHHH
Confidence 56655544443
No 153
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.71 E-value=0.00022 Score=74.62 Aligned_cols=96 Identities=14% Similarity=0.240 Sum_probs=71.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|++|||+|.+|.+++..|.. .|.+|+++|+++++.+...+-..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~---------------------------~Ga~V~v~~r~~~~~~~~~~~G~-------- 196 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA---------------------------LGANVTVGARKSAHLARITEMGL-------- 196 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHcCC--------
Confidence 4799999999999999999998 78999999999887666553100
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
......++.+.++++|+||.++|.+. ..+...+.++++.+|++.++-|.|+
T Consensus 197 ---------~~~~~~~l~~~l~~aDiVI~t~p~~~------------------i~~~~l~~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 197 ---------SPFHLSELAEEVGKIDIIFNTIPALV------------------LTKEVLSKMPPEALIIDLASKPGGT 247 (296)
T ss_pred ---------eeecHHHHHHHhCCCCEEEECCChhh------------------hhHHHHHcCCCCcEEEEEccCCCCc
Confidence 01111345667889999999975431 1234556788999999988888775
No 154
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.71 E-value=0.00017 Score=81.41 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=73.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC--HHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS--EERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~--~~~~~~~~~~~~~~~e~~~ 83 (598)
++|+|||+|.+|..+|..+.. .|.+|++||+. ++....
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~---------------------------fG~~V~~~d~~~~~~~~~~------------- 178 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKA---------------------------FGMKVLAYDPYISPERAEQ------------- 178 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEECCCCChhHHHh-------------
Confidence 689999999999999999988 78999999984 222211
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.+.....++++.+++||+|++++|....+. .+.. +.....++++.++|+.|....=..
T Consensus 179 ---------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~-----------~li~--~~~l~~mk~ga~lIN~aRG~~vde 236 (525)
T TIGR01327 179 ---------LGVELVDDLDELLARADFITVHTPLTPETR-----------GLIG--AEELAKMKKGVIIVNCARGGIIDE 236 (525)
T ss_pred ---------cCCEEcCCHHHHHhhCCEEEEccCCChhhc-----------cCcC--HHHHhcCCCCeEEEEcCCCceeCH
Confidence 112344578889999999999987542211 1211 345567899999999988777666
Q ss_pred HHHHH
Q psy11160 164 ESIMN 168 (598)
Q Consensus 164 ~~~~~ 168 (598)
+.+..
T Consensus 237 ~aL~~ 241 (525)
T TIGR01327 237 AALYE 241 (525)
T ss_pred HHHHH
Confidence 55554
No 155
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.63 E-value=0.00026 Score=77.61 Aligned_cols=131 Identities=13% Similarity=0.132 Sum_probs=77.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC--ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN--IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
-||+|||+ |.||..+|..|+. ..+.|.. ++ .+++++|+++++.+...- +
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~-------------------~~v~g~~-~~i~~eLvliD~~~~~a~G~am--------D 152 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLAS-------------------GEVFGPD-QPIALKLLGSERSKQALEGVAM--------E 152 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-------------------cccccCC-CCcccEEEEEcCCcchhHHHHH--------H
Confidence 58999999 9999999999998 1222221 24 389999999988775331 0
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.+...... .++..+++..+++++||+||++...|..+..++.+ -..+.+.+++..+.|.++..++.+|++-| -|..
T Consensus 153 L~daa~~~~-~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs-NPvD 230 (444)
T PLN00112 153 LEDSLYPLL-REVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG-NPCN 230 (444)
T ss_pred HHHhhhhhc-CceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC-CcHH
Confidence 111110001 23444444446899999999999888765432111 12234456666666766544555544433 5555
Q ss_pred HHHHH
Q psy11160 162 AAESI 166 (598)
Q Consensus 162 ~~~~~ 166 (598)
+.-.+
T Consensus 231 v~t~v 235 (444)
T PLN00112 231 TNALI 235 (444)
T ss_pred HHHHH
Confidence 54333
No 156
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00027 Score=70.99 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=38.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
|+|+|||+|.+|.++|..|.+ .||+|+++|.+++++++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~---------------------------~g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE---------------------------EGHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh---------------------------CCCceEEEEcCHHHHHHHhh
Confidence 689999999999999999999 89999999999999988443
No 157
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.55 E-value=0.00033 Score=73.80 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=71.8
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
||+|||+ |.||.++|..|+. ++...+++++|+++ . .|.. .++.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-------------------------~~~~~elvL~Di~~--a----~g~a----~DL~~ 45 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-------------------------QPYVSELSLYDIAG--A----AGVA----ADLSH 45 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-------------------------CCCCcEEEEecCCC--C----cEEE----chhhc
Confidence 7999999 9999999999988 11235899999986 1 1211 01111
Q ss_pred HHhhhcCCceEEe-c--CHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 86 VVKKTRDVNLFFS-T--DIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 86 ~~~~~~~~~~~~~-~--~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
.. ...+++.+ . ++.+++++||+||++.+.|..+..++.+ -..+.+.+++..+.|.++.++..+++. |-|..
T Consensus 46 ~~---~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivv--sNPvD 120 (312)
T TIGR01772 46 IP---TAASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVI--TNPVN 120 (312)
T ss_pred CC---cCceEEEecCCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEe--cCchh
Confidence 00 11235542 2 2346899999999999888765432211 233455677777778777555555554 44554
Q ss_pred H
Q psy11160 162 A 162 (598)
Q Consensus 162 ~ 162 (598)
+
T Consensus 121 v 121 (312)
T TIGR01772 121 S 121 (312)
T ss_pred h
Confidence 3
No 158
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.55 E-value=0.0004 Score=75.02 Aligned_cols=124 Identities=12% Similarity=0.147 Sum_probs=74.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC----ceEEEE--eCCHHHHHHHHcCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN----IQVTVV--DKSEERIRQWNSNKLPI 78 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~--d~~~~~~~~~~~~~~~~ 78 (598)
-||+|||+ |.||..+|..|+.. ++ .+ +.+.++ |+++++.+....
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~----------------------~l--~~~~~ei~L~L~diD~~~~~a~g~a~----- 95 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG----------------------EV--FGQDQPIALKLLGSERSKEALEGVAM----- 95 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc----------------------cc--cCCCCceEEEEeccCccchhhhHHHH-----
Confidence 58999999 99999999999871 01 12 234445 888888764331
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
++.+...... .++..+++..+++++||+||++...|..+..++.+ -..+.+.+++....|.++.+++.+|+.-|
T Consensus 96 ---DL~d~a~~~~-~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs- 170 (387)
T TIGR01757 96 ---ELEDSLYPLL-REVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG- 170 (387)
T ss_pred ---HHHHhhhhhc-CceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC-
Confidence 1111110001 23454444446899999999999888765332111 12234556666777777775666555544
Q ss_pred CchHHH
Q psy11160 158 VPVRAA 163 (598)
Q Consensus 158 v~~~~~ 163 (598)
-|..+.
T Consensus 171 NPvDv~ 176 (387)
T TIGR01757 171 NPCNTN 176 (387)
T ss_pred CcHHHH
Confidence 555554
No 159
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.53 E-value=0.00059 Score=72.15 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=70.3
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH--HHHcCCCCCCC
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR--QWNSNKLPIYE 80 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~--~~~~~~~~~~e 80 (598)
++.||+|||+ |.||..+|..|+. ++...+++++|++...-+ .++...
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~-------------------------~~~~~elvL~Di~~~~g~a~Dl~~~~----- 56 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQ-------------------------NPHVSELSLYDIVGAPGVAADLSHID----- 56 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhc-------------------------CCCCCEEEEEecCCCcccccchhhcC-----
Confidence 5679999999 9999999999986 113479999999321111 111100
Q ss_pred CChHHHHhhhcCCceEEecCH---HHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDI---KSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
....+..++|+ .+++++||+||++...|..+..++.+ -..+.+.++++++.+.++- +.. +|+-+
T Consensus 57 ----------~~~~v~~~td~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~-~~~-iviv~ 124 (321)
T PTZ00325 57 ----------TPAKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSA-PKA-IVGIV 124 (321)
T ss_pred ----------cCceEEEecCCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCe-EEEEe
Confidence 01234434342 46899999999999887654221100 1112223444444444442 233 44457
Q ss_pred CCchHHHHHHH
Q psy11160 157 TVPVRAAESIM 167 (598)
Q Consensus 157 Tv~~~~~~~~~ 167 (598)
|-|.+..-.++
T Consensus 125 SNPvdv~~~~~ 135 (321)
T PTZ00325 125 SNPVNSTVPIA 135 (321)
T ss_pred cCcHHHHHHHH
Confidence 77777654444
No 160
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00025 Score=73.94 Aligned_cols=74 Identities=19% Similarity=0.356 Sum_probs=58.7
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEe-CCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVD-KSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d-~~~~~~~~~~~~~~~~~e~~ 82 (598)
..+|+||| .|.||.|||..|.+ .|++|++|+ ++.
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~---------------------------~g~tVtv~~~rT~----------------- 193 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLA---------------------------ANATVTIAHSRTR----------------- 193 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHh---------------------------CCCEEEEECCCCC-----------------
Confidence 36899999 99999999999999 899999995 321
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
++++++++||+||.|++.|. .+.+. .+++|.+||+.++-.
T Consensus 194 -----------------~l~e~~~~ADIVIsavg~~~--------------~v~~~------~lk~GavVIDvGin~ 233 (296)
T PRK14188 194 -----------------DLPAVCRRADILVAAVGRPE--------------MVKGD------WIKPGATVIDVGINR 233 (296)
T ss_pred -----------------CHHHHHhcCCEEEEecCChh--------------hcchh------eecCCCEEEEcCCcc
Confidence 34667889999999998763 22222 278999999987653
No 161
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.52 E-value=0.00033 Score=75.64 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=72.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. .|++|.+||...... .+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a---------------------------~G~~V~~~Dp~~~~~----~~---------- 154 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRG---------------------------LGWKVLVCDPPRQEA----EG---------- 154 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEECCccccc----cc----------
Confidence 3689999999999999999998 799999999753211 01
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.. ...++++.+++||+|++++|--.. + ......+. -+.....++++.++|+.|..+.-..+
T Consensus 155 ---------~~-~~~~l~ell~~aDiV~lh~Plt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVde~ 215 (381)
T PRK00257 155 ---------DG-DFVSLERILEECDVISLHTPLTKE--G-----EHPTRHLL--DEAFLASLRPGAWLINASRGAVVDNQ 215 (381)
T ss_pred ---------Cc-cccCHHHHHhhCCEEEEeCcCCCC--c-----cccccccC--CHHHHhcCCCCeEEEECCCCcccCHH
Confidence 01 124678889999999999874211 0 00011111 13456678999999999988776666
Q ss_pred HHHH
Q psy11160 165 SIMN 168 (598)
Q Consensus 165 ~~~~ 168 (598)
.+.+
T Consensus 216 AL~~ 219 (381)
T PRK00257 216 ALRE 219 (381)
T ss_pred HHHH
Confidence 6655
No 162
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=97.51 E-value=0.0066 Score=61.75 Aligned_cols=67 Identities=18% Similarity=0.432 Sum_probs=50.6
Q ss_pred CCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchH
Q psy11160 54 PNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLK 133 (598)
Q Consensus 54 ~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~ 133 (598)
.-++|+++++++++.+.+.+. -+...+.+..+++++||+||+||+ |.
T Consensus 8 ~~~~I~v~~R~~e~~~~l~~~------------------~g~~~~~~~~e~~~~aDiIiLaVk-P~-------------- 54 (245)
T TIGR00112 8 AAYDIIVINRSPEKLAALAKE------------------LGIVASSDAQEAVKEADVVFLAVK-PQ-------------- 54 (245)
T ss_pred CCCeEEEEcCCHHHHHHHHHH------------------cCcEEeCChHHHHhhCCEEEEEeC-HH--------------
Confidence 347999999999998887542 023456777778899999999997 53
Q ss_pred HHHHHHHHHHHHcCCCcEEE
Q psy11160 134 YVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 134 ~~~~~~~~i~~~~~~~~ivv 153 (598)
.+.+++..+.+.+.++++||
T Consensus 55 ~i~~vl~~l~~~~~~~~~iv 74 (245)
T TIGR00112 55 DLEEVLSELKSEKGKDKLLI 74 (245)
T ss_pred HHHHHHHHHhhhccCCCEEE
Confidence 47788888887776666655
No 163
>KOG2711|consensus
Probab=97.50 E-value=0.00054 Score=71.44 Aligned_cols=108 Identities=17% Similarity=0.277 Sum_probs=77.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH------HH-HHHHHcC-CCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE------ER-IRQWNSN-KLP 77 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~------~~-~~~~~~~-~~~ 77 (598)
.||+|||.|.||+++|..+...+..++ - --.+|..|-..+ ++ -+-+|+. .+.
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~-----------------~---f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~ 81 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFP-----------------I---FDPQVRMWVFEEEINGEAEKLTEIINSRHENV 81 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhcc-----------------c---cCceeeEEEeccccCChhHHHHHHhccccccc
Confidence 589999999999999999988332221 0 123565554432 22 2335543 445
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEE
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVE 154 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~ 154 (598)
-|.|+.+ .+.++.+.+|+.+++.+||+++..+|-. .+.+++++|..+++++...|-
T Consensus 82 KYlpg~~------lP~NvvAv~dl~ea~~dADilvf~vPhQ---------------f~~~ic~~l~g~vk~~~~aIS 137 (372)
T KOG2711|consen 82 KYLPGIK------LPENVVAVPDLVEAAKDADILVFVVPHQ---------------FIPRICEQLKGYVKPGATAIS 137 (372)
T ss_pred cccCCcc------CCCCeEecchHHHHhccCCEEEEeCChh---------------hHHHHHHHHhcccCCCCeEEE
Confidence 5666642 3568999999999999999999998764 478899999999999887753
No 164
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.49 E-value=0.00064 Score=71.78 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=56.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+|||+|.+|..++..+.. .+...+|++|++++++.+.+.+..
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~-------------------------~~~~~~V~V~~Rs~~~a~~~a~~~--------- 170 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHAS-------------------------VRPIKQVRVWGRDPAKAEALAAEL--------- 170 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHh-------------------------cCCCCEEEEEcCCHHHHHHHHHHH---------
Confidence 3689999999999999987765 114579999999999998876421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
.+ .........++++++.+||+|+.|++.
T Consensus 171 ---~~-~g~~~~~~~~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 171 ---RA-QGFDAEVVTDLEAAVRQADIISCATLS 199 (314)
T ss_pred ---Hh-cCCceEEeCCHHHHHhcCCEEEEeeCC
Confidence 00 011255678888899999999877654
No 165
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.46 E-value=0.00077 Score=71.07 Aligned_cols=100 Identities=16% Similarity=0.266 Sum_probs=66.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||+|.||..++..|.. .| .+|+++++++++.+.+.+...
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~---------------------------~g~~~V~v~~r~~~ra~~la~~~g------- 223 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAA---------------------------KGVAEITIANRTYERAEELAKELG------- 223 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHH---------------------------cCCCEEEEEeCCHHHHHHHHHHcC-------
Confidence 4789999999999999999987 44 789999999998877664210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHc-CCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIA-TDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~ivv~~STv~~~~ 162 (598)
.......+..+++.++|+||.|++.|. . ......+.+.. .++.++++-| +|...
T Consensus 224 ---------~~~~~~~~~~~~l~~aDvVi~at~~~~--------------~-~~~~~~~~~~~~~~~~~viDla-vPrdi 278 (311)
T cd05213 224 ---------GNAVPLDELLELLNEADVVISATGAPH--------------Y-AKIVERAMKKRSGKPRLIVDLA-VPRDI 278 (311)
T ss_pred ---------CeEEeHHHHHHHHhcCCEEEECCCCCc--------------h-HHHHHHHHhhCCCCCeEEEEeC-CCCCC
Confidence 011111345667889999999987663 1 22222332222 2466777766 66554
Q ss_pred H
Q psy11160 163 A 163 (598)
Q Consensus 163 ~ 163 (598)
.
T Consensus 279 ~ 279 (311)
T cd05213 279 E 279 (311)
T ss_pred c
Confidence 3
No 166
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.46 E-value=0.00037 Score=73.86 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=74.2
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH--HHHHHHHcCCCCCCCCCh
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE--ERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~--~~~~~~~~~~~~~~e~~~ 83 (598)
||+|||+ |.||..+|..|+.. ++ |.. . ..+++.++|+++ ++.+... -++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~--~~--------------~~~---~-~~~~l~L~Di~~~~~~~~g~~--------~Dl 53 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG--EL--------------FGD---D-QPVILHLLDIPPAMKALEGVV--------MEL 53 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC--Cc--------------cCC---C-CceEEEEEecCCccCccceee--------eeh
Confidence 8999999 99999999999871 00 000 0 234799999987 4332111 011
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+...... .....+.+..+++++||+||++...|..+..++.+ -..+.+.+++....|.++..++.+++.- |-|...
T Consensus 54 ~d~~~~~~-~~~~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 54 QDCAFPLL-KGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred hhhccccc-CCcEEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 11110000 11234445557899999999999887665432111 1224556777777777776444444433 455555
Q ss_pred HHHH
Q psy11160 163 AESI 166 (598)
Q Consensus 163 ~~~~ 166 (598)
.-.+
T Consensus 132 ~t~~ 135 (323)
T cd00704 132 NALI 135 (323)
T ss_pred HHHH
Confidence 4333
No 167
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.45 E-value=0.00093 Score=70.89 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=71.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|.+|...+..+.. ..+..+|.+||+++++.+.+.+..
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~-------------------------~~~~~~v~V~~r~~~~~~~~~~~~--------- 173 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSR-------------------------VFDLEEVSVYCRTPSTREKFALRA--------- 173 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEECCCHHHHHHHHHHH---------
Confidence 3689999999999998888776 114579999999999998776421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+ .......+.++++++++||+|++|+|... |- +. .+.+++|..|..-++-.|+.
T Consensus 174 ---~~-~g~~v~~~~~~~eav~~aDiVitaT~s~~----------P~---~~------~~~l~~g~~v~~vGs~~p~~ 228 (325)
T TIGR02371 174 ---SD-YEVPVRAATDPREAVEGCDILVTTTPSRK----------PV---VK------ADWVSEGTHINAIGADAPGK 228 (325)
T ss_pred ---Hh-hCCcEEEeCCHHHHhccCCEEEEecCCCC----------cE---ec------HHHcCCCCEEEecCCCCccc
Confidence 00 01135667899999999999999976532 11 11 23568898887666555544
No 168
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.42 E-value=0.00035 Score=72.27 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=59.4
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||. |.||.|||..|.+ +|+.|++|..
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~---------------------------~gatVtv~~s-------------------- 190 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLD---------------------------KNATVTLTHS-------------------- 190 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHH---------------------------CCCEEEEECC--------------------
Confidence 368999999 9999999999999 8999999821
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.|.++++.+++||+||.+++.|.. +.. ..+++|.+||+.|+-.
T Consensus 191 -------------~t~~l~~~~~~ADIVI~avg~~~~--------------v~~------~~ik~GavVIDvgin~ 233 (284)
T PRK14179 191 -------------RTRNLAEVARKADILVVAIGRGHF--------------VTK------EFVKEGAVVIDVGMNR 233 (284)
T ss_pred -------------CCCCHHHHHhhCCEEEEecCcccc--------------CCH------HHccCCcEEEEeccee
Confidence 023567788999999999988741 222 2378999999987654
No 169
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.42 E-value=0.0023 Score=66.72 Aligned_cols=164 Identities=17% Similarity=0.156 Sum_probs=112.2
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
+++|+|+| .|.|. +.+++.|.+.|++|..|-.--... +. .++..+.+...+++++|
T Consensus 1 ~~~~~v~g-------gd~r~---~~~~~~l~~~g~~v~~~g~~~~~~-------------~~-~~~~~~~~~~~~~~~~~ 56 (287)
T TIGR02853 1 GIHIAVIG-------GDARQ---LELIRKLEELDAKISLIGFDQLED-------------GF-TGAVKCELLELDLTTLD 56 (287)
T ss_pred CcEEEEEc-------ccHHH---HHHHHHHHHCCCEEEEEecccccc-------------cc-ccceeecchhhhhccCC
Confidence 46899998 67764 889999999999999986421100 00 13456677788899999
Q ss_pred EEEEEeec--cc------hhh--ccH-HHHHhccCCCcEEEecCCCCChh-hhhhccceee------ec-cchhhhHHHH
Q psy11160 474 AIVVCTEW--DE------FVT--LDY-KRIYEGMMKPAYIFDGRKILNHD-ALLDIGFNVH------TV-IDLNEYQKTR 534 (598)
Q Consensus 474 alii~t~~--~~------f~~--ld~-~~l~~~m~~~~iI~D~r~i~d~~-~~~~~G~~y~------~v-~~iN~~~~~~ 534 (598)
++|++..- ++ |.+ +.+ ..+.+.+..-.+++-|.+-.+-+ ..++.|+.+. .+ ...+...-+.
T Consensus 57 ~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ 136 (287)
T TIGR02853 57 VVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKGHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEG 136 (287)
T ss_pred EEEECCccccCCceEecccccCCccccHHHHHhcCCCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHH
Confidence 99998762 11 111 112 23444455555778887776655 6777888665 22 2234445566
Q ss_pred HHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCC
Q psy11160 535 FSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPK 591 (598)
Q Consensus 535 ~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~ 591 (598)
.+..+++..+.++.+++|+|+|+..= ...+++.|...|++|.++|..
T Consensus 137 ai~~al~~~~~~l~gk~v~IiG~G~i----------G~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 137 AIMMAIEHTDFTIHGSNVMVLGFGRT----------GMTIARTFSALGARVFVGARS 183 (287)
T ss_pred HHHHHHHhcCCCCCCCEEEEEcChHH----------HHHHHHHHHHCCCEEEEEeCC
Confidence 66666655556789999999999653 378999999999999999864
No 170
>PLN00106 malate dehydrogenase
Probab=97.41 E-value=0.00071 Score=71.62 Aligned_cols=115 Identities=14% Similarity=0.167 Sum_probs=70.4
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH--HHHcCCCCCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR--QWNSNKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~--~~~~~~~~~~e~ 81 (598)
..||+|||+ |.||..+|..|+. ++...++.++|+++..-+ .++....
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~-------------------------~~~~~el~L~Di~~~~g~a~Dl~~~~~----- 67 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKM-------------------------NPLVSELHLYDIANTPGVAADVSHINT----- 67 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh-------------------------CCCCCEEEEEecCCCCeeEchhhhCCc-----
Confidence 369999999 9999999999997 112358999999871100 1111100
Q ss_pred ChHHHHhhhcCCceEE---ecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 82 GLDEVVKKTRDVNLFF---STDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~---~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
...+.. ++|+.+++++||+||++...|..+..++.+ ...+...++++.+.+.++.++..+++ +|
T Consensus 68 ----------~~~i~~~~~~~d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aiviv--vS 135 (323)
T PLN00106 68 ----------PAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNI--IS 135 (323)
T ss_pred ----------CceEEEEeCCCCHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE--eC
Confidence 012332 344567899999999999887654322111 12345566666777777664443333 55
Q ss_pred CchH
Q psy11160 158 VPVR 161 (598)
Q Consensus 158 v~~~ 161 (598)
-|..
T Consensus 136 NPvD 139 (323)
T PLN00106 136 NPVN 139 (323)
T ss_pred CCcc
Confidence 5654
No 171
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.38 E-value=0.00062 Score=72.22 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=75.7
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.||+|+|+ |++|..++..|... +-| +. +.+.+|.++|+++.. +.+ .|.. -++.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~----------------~~~---~~-~~~~el~L~D~~~~~-~~~-~g~~----~Dl~ 56 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG----------------DVF---GP-DQPVILHLLDIPPAL-KAL-EGVV----MELQ 56 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC----------------ccc---CC-CCCcEEEEEEcCCcc-ccc-ccee----eehh
Confidence 58999999 99999999999871 000 00 034699999996531 111 1210 0111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCC-CCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGK-GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+.... ...+++.+.++.+++++||+||++...|.....++. ....+.+.+++....|.++.+++.++++-| -|....
T Consensus 57 d~~~~-~~~~~~~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD~~ 134 (325)
T cd01336 57 DCAFP-LLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG-NPANTN 134 (325)
T ss_pred hcccc-ccCCceecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec-CcHHHH
Confidence 10000 012345567776789999999999877654322110 012344556677777888776555554433 355444
Q ss_pred HHHH
Q psy11160 164 ESIM 167 (598)
Q Consensus 164 ~~~~ 167 (598)
-.++
T Consensus 135 t~~~ 138 (325)
T cd01336 135 ALIL 138 (325)
T ss_pred HHHH
Confidence 3333
No 172
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.37 E-value=0.00097 Score=72.92 Aligned_cols=100 Identities=11% Similarity=0.131 Sum_probs=71.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. -|.+|++||+++... .
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~---------------------------fGm~V~~~d~~~~~~----~------------ 188 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAES---------------------------LGMRVYFYDIEDKLP----L------------ 188 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEECCCcccc----c------------
Confidence 689999999999999999888 689999999853210 0
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHH
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAES 165 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~ 165 (598)
.......++++.++.||+|++++|-... ...+. -+.....++++.++|+.|....=..+.
T Consensus 189 -------~~~~~~~~l~ell~~sDiVslh~Plt~~-----------T~~li--~~~~l~~mk~ga~lIN~aRG~~vde~a 248 (409)
T PRK11790 189 -------GNARQVGSLEELLAQSDVVSLHVPETPS-----------TKNMI--GAEELALMKPGAILINASRGTVVDIDA 248 (409)
T ss_pred -------CCceecCCHHHHHhhCCEEEEcCCCChH-----------Hhhcc--CHHHHhcCCCCeEEEECCCCcccCHHH
Confidence 1123445788999999999999864321 11121 134566789999999988776655555
Q ss_pred HHH
Q psy11160 166 IMN 168 (598)
Q Consensus 166 ~~~ 168 (598)
+..
T Consensus 249 L~~ 251 (409)
T PRK11790 249 LAD 251 (409)
T ss_pred HHH
Confidence 554
No 173
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.35 E-value=0.0022 Score=69.17 Aligned_cols=133 Identities=17% Similarity=0.112 Sum_probs=83.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
||+|.|||+|.||.+.|..|+. +| .+|++.||+.++.+++.....+ .+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~---------------------------~~d~~V~iAdRs~~~~~~i~~~~~~----~v 49 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQ---------------------------NGDGEVTIADRSKEKCARIAELIGG----KV 49 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHh---------------------------CCCceEEEEeCCHHHHHHHHhhccc----cc
Confidence 4789999999999999999999 67 8999999999999988643111 00
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+. ..++ ..-.....+++++.|+||.|.|-+. +.+.+++ .++.+.-+++.|-..+-.
T Consensus 50 ~~---~~vD--~~d~~al~~li~~~d~VIn~~p~~~-----------~~~i~ka-------~i~~gv~yvDts~~~~~~- 105 (389)
T COG1748 50 EA---LQVD--AADVDALVALIKDFDLVINAAPPFV-----------DLTILKA-------CIKTGVDYVDTSYYEEPP- 105 (389)
T ss_pred ee---EEec--ccChHHHHHHHhcCCEEEEeCCchh-----------hHHHHHH-------HHHhCCCEEEcccCCchh-
Confidence 00 0000 0011234567899999999987543 2222222 233566667666655543
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHH
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIM 222 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~ 222 (598)
.++.. +.-+.|.+.+.++=+-||-+-.+.
T Consensus 106 ~~~~~------------------------------~a~~Agit~v~~~G~dPGi~nv~a 134 (389)
T COG1748 106 WKLDE------------------------------EAKKAGITAVLGCGFDPGITNVLA 134 (389)
T ss_pred hhhhH------------------------------HHHHcCeEEEcccCcCcchHHHHH
Confidence 32222 112346677788888888765443
No 174
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00099 Score=70.56 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=66.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC-CHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK-SEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~-~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++++|||+|.+|..+|..+.. -|.+|++||+ ++.......
T Consensus 142 gkTvGIiG~G~IG~~va~~l~a---------------------------fgm~v~~~d~~~~~~~~~~~----------- 183 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKA---------------------------FGMKVIGYDPYSPRERAGVD----------- 183 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEECCCCchhhhccc-----------
Confidence 3689999999999999999998 7999999999 333222111
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
......++++.++.||+|++.+|-..++ ..+.. ++-...++++.++|+.|--+.
T Consensus 184 ----------~~~~~~~Ld~lL~~sDiv~lh~PlT~eT-----------~g~i~--~~~~a~MK~gailIN~aRG~v 237 (324)
T COG0111 184 ----------GVVGVDSLDELLAEADILTLHLPLTPET-----------RGLIN--AEELAKMKPGAILINAARGGV 237 (324)
T ss_pred ----------cceecccHHHHHhhCCEEEEcCCCCcch-----------hcccC--HHHHhhCCCCeEEEECCCcce
Confidence 1234467888999999999998653222 11211 234557889999998665443
No 175
>PRK04148 hypothetical protein; Provisional
Probab=97.30 E-value=0.0018 Score=59.63 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=66.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|.+||+| -|..+|..|++ .|++|+++|+|++.++.+++.......
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~---------------------------~G~~ViaIDi~~~aV~~a~~~~~~~v~---- 64 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKE---------------------------SGFDVIVIDINEKAVEKAKKLGLNAFV---- 64 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHHhCCeEEE----
Confidence 3689999999 99999999999 899999999999999987754222110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
..+ +..+++ .-++||+|.-+=|.| .+...+..+++...-..+|.--|
T Consensus 65 --------dDl-f~p~~~-~y~~a~liysirpp~---------------el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 65 --------DDL-FNPNLE-IYKNAKLIYSIRPPR---------------DLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred --------CcC-CCCCHH-HHhcCCEEEEeCCCH---------------HHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 234443 568999988886654 24555666777776666665333
No 176
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.28 E-value=0.0062 Score=59.18 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=81.4
Q ss_pred eEEEECCChhHHHHHHH-HHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 7 HICCIGAGYVGGPTCSV-IALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
||+|||+|.+-.+.-.. +....+.+ .+-+++++|+|+++++....- .+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l----------------------~~~ei~L~Did~~RL~~~~~~--------~~~ 50 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEEL----------------------SGSEIVLMDIDEERLEIVERL--------ARR 50 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTS----------------------TEEEEEEE-SCHHHHHHHHHH--------HHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccC----------------------CCcEEEEEcCCHHHHHHHHHH--------HHH
Confidence 79999999988875432 33312222 456999999999999865420 112
Q ss_pred HHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE-EEecCCchHHH
Q psy11160 86 VVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV-VEKSTVPVRAA 163 (598)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv-v~~STv~~~~~ 163 (598)
++++. .+-++..|+|.++|+++||+||.++...- ...+..-+.|. ++-|..= +.+++-|.|..
T Consensus 51 ~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvGg-------------~~~r~~De~Ip--~k~Gi~~~~~eT~G~GG~~ 115 (183)
T PF02056_consen 51 MVEEAGADLKVEATTDRREALEGADFVINQIRVGG-------------LEAREIDEEIP--LKYGIVGTIQETVGPGGFF 115 (183)
T ss_dssp HHHHCTTSSEEEEESSHHHHHTTESEEEE---TTH-------------HHHHHHHHHTG--GCCTTT-BTTSSSTHHHHH
T ss_pred HHHhcCCCeEEEEeCCHHHHhCCCCEEEEEeeecc-------------hHHHHHHHHHH--HHhCCccccccccCccHHH
Confidence 22221 23468889999999999999999974321 01222222232 2222222 35566666666
Q ss_pred HHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccch
Q psy11160 164 ESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 216 (598)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~g 216 (598)
..+-. +..+.+-++.|.+.+ |+.+++. -|-|.+
T Consensus 116 ~alRt------------------ipv~~~ia~~i~~~~-PdAw~iN-ytNP~~ 148 (183)
T PF02056_consen 116 RALRT------------------IPVMLDIARDIEELC-PDAWLIN-YTNPMG 148 (183)
T ss_dssp HHHHH------------------HHHHHHHHHHHHHHT-TTSEEEE--SSSHH
T ss_pred HHHhh------------------HHHHHHHHHHHHHhC-CCcEEEe-ccChHH
Confidence 55443 455666677777665 4555443 444543
No 177
>PLN02928 oxidoreductase family protein
Probab=97.26 E-value=0.00091 Score=71.60 Aligned_cols=104 Identities=12% Similarity=0.086 Sum_probs=65.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. .|.+|++||++..+......+ +..+...+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~a---------------------------fG~~V~~~dr~~~~~~~~~~~---~~~~~~~~ 209 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRP---------------------------FGVKLLATRRSWTSEPEDGLL---IPNGDVDD 209 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhh---------------------------CCCEEEEECCCCChhhhhhhc---cccccccc
Confidence 689999999999999999988 789999999973321111000 00001111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
+.. ... ...++++++++||+|++++|....+. .+. -+.....++++.++|+.+-
T Consensus 210 ~~~----~~~-~~~~L~ell~~aDiVvl~lPlt~~T~-----------~li--~~~~l~~Mk~ga~lINvaR 263 (347)
T PLN02928 210 LVD----EKG-GHEDIYEFAGEADIVVLCCTLTKETA-----------GIV--NDEFLSSMKKGALLVNIAR 263 (347)
T ss_pred ccc----ccC-cccCHHHHHhhCCEEEECCCCChHhh-----------ccc--CHHHHhcCCCCeEEEECCC
Confidence 100 001 23478889999999999987432211 111 1456677899999998653
No 178
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.26 E-value=0.00087 Score=72.30 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=67.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.||..+|..+.. -|.+|.+||..... .+
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a---------------------------~G~~V~~~dp~~~~-----~~---------- 153 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEA---------------------------LGIKTLLCDPPRAD-----RG---------- 153 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEECCcccc-----cc----------
Confidence 3689999999999999999998 79999999964211 01
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAE 164 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~ 164 (598)
.... ..++++.+++||+|++.+|-... + ......+ .-+.....++++.++|+.|--+.=..+
T Consensus 154 --------~~~~-~~~L~ell~~sDiI~lh~PLt~~--g-----~~~T~~l--i~~~~l~~mk~gailIN~aRG~vVDe~ 215 (378)
T PRK15438 154 --------DEGD-FRSLDELVQEADILTFHTPLFKD--G-----PYKTLHL--ADEKLIRSLKPGAILINACRGAVVDNT 215 (378)
T ss_pred --------cccc-cCCHHHHHhhCCEEEEeCCCCCC--c-----ccccccc--cCHHHHhcCCCCcEEEECCCchhcCHH
Confidence 0001 24678889999999999763221 0 0000011 113455678999999987655443333
Q ss_pred HHH
Q psy11160 165 SIM 167 (598)
Q Consensus 165 ~~~ 167 (598)
.+.
T Consensus 216 AL~ 218 (378)
T PRK15438 216 ALL 218 (378)
T ss_pred HHH
Confidence 333
No 179
>PRK05086 malate dehydrogenase; Provisional
Probab=97.26 E-value=0.0012 Score=69.54 Aligned_cols=120 Identities=14% Similarity=0.162 Sum_probs=67.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-CCCCCCCh
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-LPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-~~~~e~~~ 83 (598)
|||+|||+ |.+|..+|..+... +..+++++++|+++.. .+. ..+.+..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~------------------------~~~~~el~L~d~~~~~-----~g~alDl~~~~- 50 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ------------------------LPAGSELSLYDIAPVT-----PGVAVDLSHIP- 50 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC------------------------CCCccEEEEEecCCCC-----cceehhhhcCC-
Confidence 69999999 99999999988550 1135799999997532 111 0110000
Q ss_pred HHHHhhhcCCceEE--ecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFF--STDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~--~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
....++. .+++.++++++|+||+|.+.+.++..++.+ -..+.+.+++.++.+.++. ++.+ ++.+|-|.
T Consensus 51 -------~~~~i~~~~~~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~i-vivvsNP~ 121 (312)
T PRK05086 51 -------TAVKIKGFSGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKAC-IGIITNPV 121 (312)
T ss_pred -------CCceEEEeCCCCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeE-EEEccCch
Confidence 0012332 356566899999999999887654321100 0112224444555555553 3333 33467777
Q ss_pred HHHH
Q psy11160 161 RAAE 164 (598)
Q Consensus 161 ~~~~ 164 (598)
.+.-
T Consensus 122 D~~t 125 (312)
T PRK05086 122 NTTV 125 (312)
T ss_pred HHHH
Confidence 5543
No 180
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.24 E-value=0.00058 Score=71.61 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=70.7
Q ss_pred EECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh
Q psy11160 10 CIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKK 89 (598)
Q Consensus 10 viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~~~~ 89 (598)
|||+|.||.++|..|+. ++-.-++.++|+++++.+....- +.+...
T Consensus 1 iIGaG~VG~~~a~~l~~-------------------------~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~- 46 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-------------------------QGIADEIVLIDINKDKAEGEAMD--------LQHAAS- 46 (299)
T ss_pred CCCcCHHHHHHHHHHHh-------------------------cCCCCEEEEEeCCCChhhHHHHH--------HHHhhc-
Confidence 69999999999999988 11224899999987765543210 000000
Q ss_pred hcCCceEEe-cCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHHHH
Q psy11160 90 TRDVNLFFS-TDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIM 167 (598)
Q Consensus 90 ~~~~~~~~~-~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~~ 167 (598)
....+.+.+ .++ +++++||+||++...|.++..++.+ -..+...+++..+.|.++.+.+.+++. |-|....-.++
T Consensus 47 ~~~~~~~i~~~~~-~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivv--sNP~d~~t~~~ 123 (299)
T TIGR01771 47 FLPTPKKIRSGDY-SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVA--TNPVDILTYVA 123 (299)
T ss_pred ccCCCeEEecCCH-HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--CCHHHHHHHHH
Confidence 001122333 455 5899999999999888765432211 122345566677777776544444444 34554443333
No 181
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.19 E-value=0.0041 Score=59.07 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=57.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH-cCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN-SNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-~~~~~~~e~~~~ 84 (598)
+++.|+|.|.+|..+|..|.. .|-+|+++|+||-+.-+.. .|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~---------------------------~Ga~V~V~e~DPi~alqA~~dG---------- 66 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRG---------------------------LGARVTVTEIDPIRALQAAMDG---------- 66 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHH---------------------------TT-EEEEE-SSHHHHHHHHHTT----------
T ss_pred CEEEEeCCCcccHHHHHHHhh---------------------------CCCEEEEEECChHHHHHhhhcC----------
Confidence 689999999999999999999 7999999999997654433 33
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.+. .+.++++..+|++|.+++...- + -.+..+.++++.++......
T Consensus 67 ----------f~v-~~~~~a~~~adi~vtaTG~~~v--------------i---~~e~~~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 67 ----------FEV-MTLEEALRDADIFVTATGNKDV--------------I---TGEHFRQMKDGAILANAGHF 112 (162)
T ss_dssp -----------EE-E-HHHHTTT-SEEEE-SSSSSS--------------B----HHHHHHS-TTEEEEESSSS
T ss_pred ----------cEe-cCHHHHHhhCCEEEECCCCccc--------------c---CHHHHHHhcCCeEEeccCcC
Confidence 333 3577899999998888654310 0 12344568899999765443
No 182
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.19 E-value=0.0013 Score=69.61 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=73.5
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH--HHHHHcCCCCCCCCCh
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER--IRQWNSNKLPIYEPGL 83 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~~~~~~~~~~e~~~ 83 (598)
||+|||+ |.||..+|..|+.+ .+.++. ..+++.++|+++.. .+... . ++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-------------------~~~~~~-~e~el~LiD~~~~~~~a~g~~---~-----Dl 52 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-------------------RMLGKD-QPIILHLLDIPPAMKVLEGVV---M-----EL 52 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-------------------cccCCC-CccEEEEEecCCcccccceeE---e-----eh
Confidence 6999999 99999999999871 000000 12379999996542 22110 0 00
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
.+...... .....+++..+++++||+||++...|..+..++.+ ...+.+.+++....|.++.+++.+++.- |-|...
T Consensus 53 ~d~~~~~~-~~~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv 130 (324)
T TIGR01758 53 MDCAFPLL-DGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANT 130 (324)
T ss_pred hcccchhc-CceeccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 00000000 12334445446899999999998877654321111 1234456677777777776455555443 356655
Q ss_pred HHHHHH
Q psy11160 163 AESIMN 168 (598)
Q Consensus 163 ~~~~~~ 168 (598)
.-.++.
T Consensus 131 ~t~v~~ 136 (324)
T TIGR01758 131 NALVLS 136 (324)
T ss_pred HHHHHH
Confidence 544443
No 183
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.16 E-value=0.0028 Score=68.94 Aligned_cols=90 Identities=12% Similarity=0.105 Sum_probs=64.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+|+|+|.+|..+|..+.. .|.+|+++|+++.+.......
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~---------------------------~Ga~ViV~d~dp~r~~~A~~~---------- 237 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARG---------------------------MGARVIVTEVDPIRALEAAMD---------- 237 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhh---------------------------CcCEEEEEeCChhhHHHHHhc----------
Confidence 4689999999999999999888 788999999999875443321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
+... .+.+++++.+|++|.+++++. .+. ......++++.++++.+-.
T Consensus 238 ---------G~~v-~~leeal~~aDVVItaTG~~~--------------vI~---~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 238 ---------GFRV-MTMEEAAKIGDIFITATGNKD--------------VIR---GEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ---------CCEe-CCHHHHHhcCCEEEECCCCHH--------------HHH---HHHHhcCCCCcEEEEECCC
Confidence 1122 234667899999998865431 111 2355678899998875443
No 184
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.16 E-value=0.0019 Score=59.52 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=55.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++.|||+|-+|..++..|+. .|. +|++++|+.++.+.+.+..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~---------------------------~g~~~i~i~nRt~~ra~~l~~~~-------- 56 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAA---------------------------LGAKEITIVNRTPERAEALAEEF-------- 56 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHH---------------------------TTSSEEEEEESSHHHHHHHHHHH--------
T ss_pred CCEEEEECCHHHHHHHHHHHHH---------------------------cCCCEEEEEECCHHHHHHHHHHc--------
Confidence 4689999999999999999999 675 4999999999999876421
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.. ..-......+..+.+.++|+||.|+|.+.
T Consensus 57 ----~~-~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 57 ----GG-VNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp ----TG-CSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred ----Cc-cccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 00 00112334556667899999999987664
No 185
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.14 E-value=0.0012 Score=67.99 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=69.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++.|+|+|-+|.+++..|++ .|++|+++++++++.+.+.+.....
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~---------------------------~g~~v~v~~R~~~~~~~la~~~~~~------ 163 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLK---------------------------ADCNVIIANRTVSKAEELAERFQRY------ 163 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHHHhhc------
Confidence 4679999999999999999999 7899999999999888766421000
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
......+.......++|+||.|+|....... .... + -...++++.+|++.++.|+.|.
T Consensus 164 --------~~~~~~~~~~~~~~~~DivInatp~gm~~~~----~~~~---~------~~~~l~~~~~v~D~~y~p~~T~ 221 (270)
T TIGR00507 164 --------GEIQAFSMDELPLHRVDLIINATSAGMSGNI----DEPP---V------PAEKLKEGMVVYDMVYNPGETP 221 (270)
T ss_pred --------CceEEechhhhcccCccEEEECCCCCCCCCC----CCCC---C------CHHHcCCCCEEEEeccCCCCCH
Confidence 0111111111234579999999876432110 0000 1 0234678899999999999773
No 186
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.12 E-value=0.0021 Score=70.86 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=65.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH-cCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN-SNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-~~~~~~~e~~~ 83 (598)
.++|+|||+|.+|..+|..+.. .|.+|+++|+++.+..... .|
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a---------------------------~Ga~ViV~e~dp~~a~~A~~~G--------- 297 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRG---------------------------FGARVVVTEIDPICALQAAMEG--------- 297 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCchhHHHHHhcC---------
Confidence 3689999999999999999988 7889999999987764322 11
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.. ..+++++++.+|+|+++++++. .+ -....+.++++.++++.+-.
T Consensus 298 -----------~~-~~~leell~~ADIVI~atGt~~--------------iI---~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 298 -----------YQ-VVTLEDVVETADIFVTATGNKD--------------II---TLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred -----------ce-eccHHHHHhcCCEEEECCCccc--------------cc---CHHHHhccCCCcEEEEcCCC
Confidence 11 2356778999999999965431 01 12455678999999986554
No 187
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.10 E-value=0.0016 Score=58.61 Aligned_cols=99 Identities=18% Similarity=0.308 Sum_probs=58.3
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEE-eCCHHHHHHHHcCCCCCCCCChH
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVV-DKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
||+|+|+ |++|..++..|... +++++..+ +++.++-+.+......+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~--------------------------~~~~l~av~~~~~~~~~~~~~~~~~~~----- 49 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--------------------------PDFEVVALAASARSAGKRVSEAGPHLK----- 49 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC--------------------------CCceEEEEEechhhcCcCHHHHCcccc-----
Confidence 6899995 99999999888871 46677766 554333222221100000
Q ss_pred HHHhhhcCCceEEe-cCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 85 EVVKKTRDVNLFFS-TDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
..+ . ..++ .+.+ ..++|+||+|+|... ..+.+..+.+.+.++++|++.|+.-
T Consensus 50 ~~~-----~-~~~~~~~~~--~~~~DvV~~~~~~~~---------------~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 50 GEV-----V-LELEPEDFE--ELAVDIVFLALPHGV---------------SKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred ccc-----c-cccccCChh--hcCCCEEEEcCCcHH---------------HHHHHHHHHhhhcCCCEEEECCccc
Confidence 000 0 0111 2222 258999999986542 3444445556678999999998763
No 188
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.10 E-value=0.001 Score=63.61 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=66.1
Q ss_pred EEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 8 ICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 8 I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
|+|+|+ |++|..++..|.+ .|++|+++-|++++.+. ..+...+ .
T Consensus 1 I~V~GatG~vG~~l~~~L~~---------------------------~~~~V~~~~R~~~~~~~-~~~~~~~-~------ 45 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLR---------------------------RGHEVTALVRSPSKAED-SPGVEII-Q------ 45 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHH---------------------------TTSEEEEEESSGGGHHH-CTTEEEE-E------
T ss_pred eEEECCCChHHHHHHHHHHH---------------------------CCCEEEEEecCchhccc-ccccccc-e------
Confidence 789997 9999999999999 78999999999998887 2221111 0
Q ss_pred HhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 87 VKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
..+.-..+..++++++|+||.+++.+.. |...++.+++.+.+. ....+|+.+|+-.
T Consensus 46 ------~d~~d~~~~~~al~~~d~vi~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~~~ 101 (183)
T PF13460_consen 46 ------GDLFDPDSVKAALKGADAVIHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSAGV 101 (183)
T ss_dssp ------SCTTCHHHHHHHHTTSSEEEECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEETTG
T ss_pred ------eeehhhhhhhhhhhhcchhhhhhhhhcc----------ccccccccccccccc-ccccceeeecccc
Confidence 0010012346678899999999976532 344555555555443 3445666555543
No 189
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.08 E-value=0.0039 Score=65.74 Aligned_cols=87 Identities=11% Similarity=0.215 Sum_probs=58.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCH-HHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSE-ERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~-~~~~~~~~~~~~~~e~~ 82 (598)
..||+|||+|.||...+..+... ++.++++ +|+++ +++. .+ .
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~--------------------------pd~ELVgV~dr~~~~~~~---~~-~------ 46 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQ--------------------------PDMELVGVFSRRGAETLD---TE-T------ 46 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhC--------------------------CCcEEEEEEcCCcHHHHh---hc-C------
Confidence 47999999999999999888761 5778776 69985 4332 11 1
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
....+.+..+.+.++|++++|+|+..+ ...+.+.+..+.-||.+.
T Consensus 47 -----------~v~~~~d~~e~l~~iDVViIctPs~th------------------~~~~~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 47 -----------PVYAVADDEKHLDDVDVLILCMGSATD------------------IPEQAPYFAQFANTVDSF 91 (324)
T ss_pred -----------CccccCCHHHhccCCCEEEEcCCCccC------------------HHHHHHHHHcCCCEEECC
Confidence 122345666677889999999766432 233444556676677654
No 190
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.06 E-value=0.0018 Score=63.83 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=38.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
++|+|+|+|.||..+|..|.+ .|++|+++|+++++++.+..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~---------------------------~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLE---------------------------EGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEcCCHHHHHHHHH
Confidence 689999999999999999999 89999999999998887764
No 191
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.05 E-value=0.0038 Score=68.38 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=65.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+|+|+|.+|..+|..+.. .|.+|+++|+++.+.......
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~---------------------------~Ga~ViV~d~dp~ra~~A~~~---------- 254 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRG---------------------------LGARVIVTEVDPICALQAAMD---------- 254 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEcCCchhhHHHHhc----------
Confidence 4689999999999999999998 788999999999886543321
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv 158 (598)
+.. ..+.+++++.+|+||.+++++ .++ ......++++.++++-+..
T Consensus 255 ---------G~~-v~~l~eal~~aDVVI~aTG~~------------------~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 255 ---------GFR-VMTMEEAAELGDIFVTATGNK------------------DVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred ---------CCE-ecCHHHHHhCCCEEEECCCCH------------------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 112 224567888999999886543 122 2456678899998875443
No 192
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.05 E-value=0.0044 Score=67.63 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=64.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+|+|+|.+|..+|..+.. .|.+|+++|+++.+.+....-
T Consensus 202 GktVvViG~G~IG~~va~~ak~---------------------------~Ga~ViV~d~d~~R~~~A~~~---------- 244 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRG---------------------------QGARVIVTEVDPICALQAAME---------- 244 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEECChhhHHHHHhc----------
Confidence 3689999999999999999888 788999999999987765531
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
+... .+.++++..+|+||.|++++. .+. ....+.++++.++++-+
T Consensus 245 ---------G~~~-~~~~e~v~~aDVVI~atG~~~--------------~i~---~~~l~~mk~GgilvnvG 289 (413)
T cd00401 245 ---------GYEV-MTMEEAVKEGDIFVTTTGNKD--------------IIT---GEHFEQMKDGAIVCNIG 289 (413)
T ss_pred ---------CCEE-ccHHHHHcCCCEEEECCCCHH--------------HHH---HHHHhcCCCCcEEEEeC
Confidence 1111 234567889999999865431 111 23456788999888766
No 193
>KOG2305|consensus
Probab=97.03 E-value=0.0016 Score=64.43 Aligned_cols=112 Identities=22% Similarity=0.232 Sum_probs=74.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC----CCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK----LPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~----~~~~e 80 (598)
.-||+|+|.|.+|.+.|..||. .||+|..||+.++.+....+.. ..+.+
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs---------------------------~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee 55 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFAS---------------------------SGYQVQLYDILEKQLQTALENVEKELRKLEE 55 (313)
T ss_pred ccceeEeecccccchHHHHHhc---------------------------cCceEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999 8999999999988776432210 00111
Q ss_pred CC-------hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 81 PG-------LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 81 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
.| .++.+ ..+..|+++.+++++|=.|=-|||... ..-+...+++-+.+.+.+|+-
T Consensus 56 ~g~lrGnlsa~eql-----a~is~t~~l~E~vk~Ai~iQEcvpE~L-------------~lkk~ly~qlD~i~d~~tIla 117 (313)
T KOG2305|consen 56 HGLLRGNLSADEQL-----ALISGTTSLNELVKGAIHIQECVPEDL-------------NLKKQLYKQLDEIADPTTILA 117 (313)
T ss_pred hhhhccCccHHHHH-----HHHhCCccHHHHHhhhhhHHhhchHhh-------------HHHHHHHHHHHHhcCCceEEe
Confidence 11 11111 124457889999999988888987643 233556677777776666653
Q ss_pred E-ecCCchH
Q psy11160 154 E-KSTVPVR 161 (598)
Q Consensus 154 ~-~STv~~~ 161 (598)
. .||..|.
T Consensus 118 SSTSt~mpS 126 (313)
T KOG2305|consen 118 SSTSTFMPS 126 (313)
T ss_pred ccccccChH
Confidence 3 2445553
No 194
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.02 E-value=0.003 Score=66.96 Aligned_cols=92 Identities=11% Similarity=0.133 Sum_probs=63.0
Q ss_pred ceEEEECCChhHHHHHHHHH-HhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIA-LKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++++|||+|.+|..+|..+. . -|.+|.+||+.........
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~---------------------------fgm~V~~~~~~~~~~~~~~------------ 186 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFG---------------------------FNMPILYNARRHHKEAEER------------ 186 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhc---------------------------CCCEEEEECCCCchhhHHh------------
Confidence 68999999999999999887 5 5789999997532111000
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.+.+. .++++.+++||+|++++|-...+ ..+. -+.....++++.++|+.+--
T Consensus 187 --------~~~~~-~~l~ell~~sDvv~lh~plt~~T-----------~~li--~~~~l~~mk~ga~lIN~aRG 238 (323)
T PRK15409 187 --------FNARY-CDLDTLLQESDFVCIILPLTDET-----------HHLF--GAEQFAKMKSSAIFINAGRG 238 (323)
T ss_pred --------cCcEe-cCHHHHHHhCCEEEEeCCCChHH-----------hhcc--CHHHHhcCCCCeEEEECCCc
Confidence 01222 37888999999999998743221 1121 13456778999999986543
No 195
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.02 E-value=0.014 Score=59.96 Aligned_cols=155 Identities=12% Similarity=0.152 Sum_probs=90.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
+||+|+|+ |.||..++..+... +++++++ +|+++++.... . +
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~--------------------------~~~elvav~d~~~~~~~~~--~-----~--- 45 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA--------------------------EDLELVAAVDRPGSPLVGQ--G-----A--- 45 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC--------------------------CCCEEEEEEecCCcccccc--C-----C---
Confidence 69999999 99999999888761 4567655 88887655432 0 0
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC-chHH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV-PVRA 162 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv-~~~~ 162 (598)
.++..++|+++.++++|+|+.+++ |. ...+ .+...+..++-||..+|- .+..
T Consensus 46 ---------~~i~~~~dl~~ll~~~DvVid~t~-p~--------------~~~~---~~~~al~~G~~vvigttG~s~~~ 98 (257)
T PRK00048 46 ---------LGVAITDDLEAVLADADVLIDFTT-PE--------------ATLE---NLEFALEHGKPLVIGTTGFTEEQ 98 (257)
T ss_pred ---------CCccccCCHHHhccCCCEEEECCC-HH--------------HHHH---HHHHHHHcCCCEEEECCCCCHHH
Confidence 123456788887888999998853 21 1222 233334456655555543 4555
Q ss_pred HHHHHHHHhhccCCccc--ccCCCCCchHHHHHHHHHHHHhcCCceEEEec------cccchhhhhHHHHHhh
Q psy11160 163 AESIMNVLKANHKTNVQ--FQGRAADLKYVEAAARMIAEIATDNKIVVEKS------TVPVRAAESIMNVLKA 227 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~--~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eS------TvP~gtt~~~~~~L~~ 227 (598)
.+++.. .++.-+. ..+...-...+....+..++.+.+=++-|+|+ -.|-||...+.+.+..
T Consensus 99 ~~~l~~----aa~~~~v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei~E~HH~~K~DaPSGTA~~l~~~i~~ 167 (257)
T PRK00048 99 LAELEE----AAKKIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAHHRHKVDAPSGTALKLAEAIAE 167 (257)
T ss_pred HHHHHH----HhcCCCEEEECcchHHHHHHHHHHHHHHHhcCCCCEEEEEccCCCCCCCCCHHHHHHHHHHHH
Confidence 555544 1122221 12222233344555555555553336667665 4688998877666654
No 196
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.01 E-value=0.003 Score=66.61 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=64.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|..+|..+.. -|.+|++||+..... +
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~---------------------------fgm~V~~~d~~~~~~-----------~---- 182 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQA---------------------------FGAKVVYYSTSGKNK-----------N---- 182 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhh---------------------------cCCEEEEECCCcccc-----------c----
Confidence 3689999999999999988877 588999999853110 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.... ..++++.+++||+|++++|-...+.+ ..+ +.....++++.++|+.|--+.
T Consensus 183 --------~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~-----li~--------~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 183 --------EEYE-RVSLEELLKTSDIISIHAPLNEKTKN-----LIA--------YKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred --------cCce-eecHHHHhhcCCEEEEeCCCCchhhc-----ccC--------HHHHHhCCCCeEEEECCCccc
Confidence 0112 23678899999999999874322111 111 345567899999998664433
No 197
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.99 E-value=0.022 Score=62.89 Aligned_cols=169 Identities=13% Similarity=0.163 Sum_probs=94.6
Q ss_pred ceEEEECCChhHHH--HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGP--TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~--~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|.. .+ +...|...-+. + ++-+|+++|+|+++.+.+.+- .
T Consensus 1 ~KI~iIGaGS~-~tp~li~~l~~~~~~--------------------l--~~~ei~L~DId~~rl~~v~~l--------~ 49 (437)
T cd05298 1 FKIVIAGGGST-YTPGIVKSLLDRKED--------------------F--PLRELVLYDIDAERQEKVAEA--------V 49 (437)
T ss_pred CeEEEECCcHH-HHHHHHHHHHhCccc--------------------C--CCCEEEEECCCHHHHHHHHHH--------H
Confidence 69999999986 33 23333330000 1 567999999999998874420 1
Q ss_pred HHHHhhh-cCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 84 DEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
..++++. .+-++..|+|.++|+++||+||.++.-... ..+..-+.|... .-++-.++|-+.|.
T Consensus 50 ~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~~irvGg~-------------~~r~~De~Ip~k---yGi~gqET~G~GG~ 113 (437)
T cd05298 50 KILFKENYPEIKFVYTTDPEEAFTDADFVFAQIRVGGY-------------AMREQDEKIPLK---HGVVGQETCGPGGF 113 (437)
T ss_pred HHHHHhhCCCeEEEEECCHHHHhCCCCEEEEEeeeCCc-------------hHHHHHHhHHHH---cCcceecCccHHHH
Confidence 1112211 123688999999999999999999743211 112222334322 22455577788887
Q ss_pred HHHHHHHHhhccCCcccccCCCCCchHHHHHHHHHHHHhcCCceEEEeccccchhhhhHHHHHhhcccCCceeeEEECCc
Q psy11160 163 AESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242 (598)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eSTvP~gtt~~~~~~L~~~~~~g~~~~l~~~Pe 242 (598)
...+-. ..-+.+-++.|.+.+ |+.++ +--|-|.+-.. ..+........-++++++|.
T Consensus 114 ~~alRt------------------ip~~~~i~~~i~~~~-pda~l-in~tNP~~~vt---~~~~~~~~~~kviGlC~~~~ 170 (437)
T cd05298 114 AYGLRS------------------IGPMIELIDDIEKYS-PDAWI-LNYSNPAAIVA---EALRRLFPNARILNICDMPI 170 (437)
T ss_pred HHHHhh------------------HHHHHHHHHHHHHHC-CCeEE-EEecCcHHHHH---HHHHHHCCCCCEEEECCcHH
Confidence 765543 345566677777766 33333 33455554321 12221111123466777775
Q ss_pred cc
Q psy11160 243 FL 244 (598)
Q Consensus 243 ~~ 244 (598)
..
T Consensus 171 ~~ 172 (437)
T cd05298 171 AI 172 (437)
T ss_pred HH
Confidence 53
No 198
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.99 E-value=0.0024 Score=70.34 Aligned_cols=73 Identities=26% Similarity=0.306 Sum_probs=52.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc-CCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS-NKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-~~~~~~e~~~~ 84 (598)
|||.|+|+|.+|..+|..|.+ .|++|+++|+++++++.+.+ ...++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~---------------------------~g~~v~vid~~~~~~~~~~~~~~~~~~~---- 49 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSG---------------------------ENNDVTVIDTDEERLRRLQDRLDVRTVV---- 49 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEECCHHHHHHHHhhcCEEEEE----
Confidence 589999999999999999999 79999999999999998764 2111110
Q ss_pred HHHhhhcCCceEEecCHHHH-hccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSA-IQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~-~~~adviii~v~t 117 (598)
+..+-...+.++ +.++|.+|++++.
T Consensus 50 --------gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 50 --------GNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred --------eCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 001111123334 6789999999754
No 199
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.94 E-value=0.012 Score=61.63 Aligned_cols=165 Identities=20% Similarity=0.242 Sum_probs=100.8
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
+++++|+| .|.|+ +.+++.|.+.|++|.++.- ++++. . ..+..+..+..++++++|
T Consensus 2 ~~~~~v~g-------gd~r~---~~~~~~l~~~G~~v~~~g~--~~~~~-----------~-~~g~~~~~~~~~~~~~ad 57 (296)
T PRK08306 2 GKHIAVIG-------GDARQ---LELIRKLVELGAKVSLVGF--DQLDH-----------G-FTGATKSSSLEEALSDVD 57 (296)
T ss_pred CcEEEEEc-------CcHHH---HHHHHHHHHCCCEEEEEec--ccccc-----------c-cCCceeeccHHHHhccCC
Confidence 57899999 67765 7899999999999998531 11110 0 114466677888999999
Q ss_pred EEEEEeec--------cchhh--ccH-HHHHhccCCCcEEEecCCC-CChhhhhhccceeeecc-c-----hhh-hHHHH
Q psy11160 474 AIVVCTEW--------DEFVT--LDY-KRIYEGMMKPAYIFDGRKI-LNHDALLDIGFNVHTVI-D-----LNE-YQKTR 534 (598)
Q Consensus 474 alii~t~~--------~~f~~--ld~-~~l~~~m~~~~iI~D~r~i-~d~~~~~~~G~~y~~v~-~-----iN~-~~~~~ 534 (598)
+++.+..- .-|.. +.+ ....+.|++..++|=+.-- .-.+...+.|+.+.... + .|. ..-+.
T Consensus 58 ~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~~G~~~~~~~~~~~~~gi~~~~~~~~~~~~~~ns~~~aeg 137 (296)
T PRK08306 58 VIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIFSGIANPYLKELAKETNRKLVELFERDDVAILNSIPTAEG 137 (296)
T ss_pred EEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEEEecCCHHHHHHHHHCCCeEEEEeccchhhhhccHhHHHH
Confidence 99988442 11211 111 2345556666545532211 12245556777553222 1 121 11122
Q ss_pred HHHHHHHHhcCCCCCCEEEEEeeecCCCCCCcCCCchHHHHHHHHhCCCEEEEECCCC
Q psy11160 535 FSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKL 592 (598)
Q Consensus 535 ~~~~i~~~~~~~~~~~~i~v~GlafK~~~~d~R~sp~~~i~~~l~~~g~~v~~~DP~~ 592 (598)
.+....+.++.++.+++|+|+|..- -...++..|...|++|.+||...
T Consensus 138 av~~a~~~~~~~l~g~kvlViG~G~----------iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 138 AIMMAIEHTPITIHGSNVLVLGFGR----------TGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred HHHHHHHhCCCCCCCCEEEEECCcH----------HHHHHHHHHHHCCCEEEEEECCH
Confidence 2222233344567899999999864 23889999999999999998763
No 200
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.94 E-value=0.004 Score=61.65 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=52.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|++||||.+|..+...+.+ +|- .---|.+||++.+++..+.+..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~----------------~~~--------~~e~v~v~D~~~ek~~~~~~~~---------- 46 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRD----------------GRV--------DFELVAVYDRDEEKAKELEASV---------- 46 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhc----------------CCc--------ceeEEEEecCCHHHHHHHHhhc----------
Confidence 589999999999999988876 111 1136889999999999877542
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEec
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISV 115 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v 115 (598)
.-+.++++++.+.+.|+++-|.
T Consensus 47 --------~~~~~s~ide~~~~~DlvVEaA 68 (255)
T COG1712 47 --------GRRCVSDIDELIAEVDLVVEAA 68 (255)
T ss_pred --------CCCccccHHHHhhccceeeeeC
Confidence 1233478888889999999994
No 201
>KOG1495|consensus
Probab=96.93 E-value=0.0031 Score=63.86 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=57.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH----HHcCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ----WNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~----~~~~~~~~~e 80 (598)
..||.|+|.|.||.+.|..+.. ++-.-++..+|.++++.+- ++.| .++.
T Consensus 20 ~~KItVVG~G~VGmAca~siL~-------------------------k~Ladel~lvDv~~dklkGE~MDLqH~-s~f~- 72 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILL-------------------------KGLADELVLVDVNEDKLKGEMMDLQHG-SAFL- 72 (332)
T ss_pred CceEEEEccchHHHHHHHHHHH-------------------------hhhhhceEEEecCcchhhhhhhhhccc-cccc-
Confidence 4699999999999999998877 1123599999999998763 2222 2221
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKT 121 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~ 121 (598)
...++.++.|+. +-++++++|++.+.-..+
T Consensus 73 ----------~~~~V~~~~Dy~-~sa~S~lvIiTAGarq~~ 102 (332)
T KOG1495|consen 73 ----------STPNVVASKDYS-VSANSKLVIITAGARQSE 102 (332)
T ss_pred ----------cCCceEecCccc-ccCCCcEEEEecCCCCCC
Confidence 124677888886 788999999998765443
No 202
>KOG1502|consensus
Probab=96.93 E-value=0.0053 Score=64.53 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=76.8
Q ss_pred CCC-CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH------HHHHH
Q psy11160 1 MVQ-TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER------IRQWN 72 (598)
Q Consensus 1 m~~-~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~------~~~~~ 72 (598)
|++ ..++|||-|+ ||+|+.+...|.. +||.|.+.=|+++. +..+.
T Consensus 1 m~~~~~~~VcVTGAsGfIgswivk~LL~---------------------------rGY~V~gtVR~~~~~k~~~~L~~l~ 53 (327)
T KOG1502|consen 1 MDQDEGKKVCVTGASGFIGSWIVKLLLS---------------------------RGYTVRGTVRDPEDEKKTEHLRKLE 53 (327)
T ss_pred CCCCCCcEEEEeCCchHHHHHHHHHHHh---------------------------CCCEEEEEEcCcchhhhHHHHHhcc
Confidence 555 4689999987 9999999999999 89999999999886 33332
Q ss_pred cCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCC---CCCCcchHHHHHHHHHHHHHcCCC
Q psy11160 73 SNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNG---KGRAADLKYVEAAARMIAEIATDN 149 (598)
Q Consensus 73 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~ 149 (598)
....... .....+.-..+..++++.||.||-+. +|...+..+ .--.++++...++++.+.+.-+=.
T Consensus 54 ~a~~~l~----------l~~aDL~d~~sf~~ai~gcdgVfH~A-sp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVk 122 (327)
T KOG1502|consen 54 GAKERLK----------LFKADLLDEGSFDKAIDGCDGVFHTA-SPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVK 122 (327)
T ss_pred cCcccce----------EEeccccccchHHHHHhCCCEEEEeC-ccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcc
Confidence 1111010 01123445567888999999987654 454322211 112345555666666665554445
Q ss_pred cEEEEecCCch
Q psy11160 150 KIVVEKSTVPV 160 (598)
Q Consensus 150 ~ivv~~STv~~ 160 (598)
.+|+.+|+...
T Consensus 123 rvV~TSS~aAv 133 (327)
T KOG1502|consen 123 RVVYTSSTAAV 133 (327)
T ss_pred eEEEeccHHHh
Confidence 67776666544
No 203
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.93 E-value=0.0079 Score=72.36 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=56.6
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++++|+|||+|+||.+.|..|++ .|+++.-.++.+ ..++..|++.|++.++.+.+.++.. +.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~-~~~~~~~~~~~~------------~~~~~lV~VaD~~~~~a~~la~~~~-----~~ 629 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLAS-VKTISYYGDDSE------------EPTDVHVIVASLYLKDAKETVEGIE-----NA 629 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHh-CcCccccccccc------------cccccEEEEECCCHHHHHHHHHhcC-----CC
Confidence 45799999999999999999998 233221001111 0023469999999999988775421 10
Q ss_pred HHHHhhhcCCceEE-ecCHHH---HhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFF-STDIKS---AIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~-~~~~~~---~~~~adviii~v~tp~ 119 (598)
..... .+|.++ .++++|+|++|+|+..
T Consensus 630 ---------~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~ 660 (1042)
T PLN02819 630 ---------EAVQLDVSDSESLLKYVSQVDVVISLLPASC 660 (1042)
T ss_pred ---------ceEEeecCCHHHHHHhhcCCCEEEECCCchh
Confidence 01122 344443 3467999999988764
No 204
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.91 E-value=0.0051 Score=65.16 Aligned_cols=95 Identities=11% Similarity=0.112 Sum_probs=66.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++++|||+|.+|..+|..++- -|.+|..||+++. -+.-..
T Consensus 146 gktvGIiG~GrIG~avA~r~~~---------------------------Fgm~v~y~~~~~~-~~~~~~----------- 186 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKG---------------------------FGMKVLYYDRSPN-PEAEKE----------- 186 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhc---------------------------CCCEEEEECCCCC-hHHHhh-----------
Confidence 3789999999999999999887 6899999999864 111111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.+.++.. +++.+++||+|++.+|--.+ ...+. -+...+.++++.++|+.+--..
T Consensus 187 --------~~~~y~~-l~ell~~sDii~l~~Plt~~-----------T~hLi--n~~~l~~mk~ga~lVNtaRG~~ 240 (324)
T COG1052 187 --------LGARYVD-LDELLAESDIISLHCPLTPE-----------TRHLI--NAEELAKMKPGAILVNTARGGL 240 (324)
T ss_pred --------cCceecc-HHHHHHhCCEEEEeCCCChH-----------Hhhhc--CHHHHHhCCCCeEEEECCCccc
Confidence 1133444 78899999999999764321 22222 2456678999999998655443
No 205
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.90 E-value=0.004 Score=67.27 Aligned_cols=106 Identities=20% Similarity=0.266 Sum_probs=70.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-CCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-LPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-~~~~e~~~~ 84 (598)
.+|.|||+|.+|...+..+.. .|.+|+++|+++++.+.+.+.. ..+..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~---------------------------lGa~V~v~d~~~~~~~~l~~~~g~~v~~---- 216 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANG---------------------------LGATVTILDINIDRLRQLDAEFGGRIHT---- 216 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHH---------------------------CCCeEEEEECCHHHHHHHHHhcCceeEe----
Confidence 579999999999999999998 7889999999999988775321 11100
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
...-..++.+.++++|+||.|++.|..+ .+.+ +.+...+.++++.+|++-+.-+-|..
T Consensus 217 ---------~~~~~~~l~~~l~~aDvVI~a~~~~g~~-------~p~l-----it~~~l~~mk~g~vIvDva~d~GG~~ 274 (370)
T TIGR00518 217 ---------RYSNAYEIEDAVKRADLLIGAVLIPGAK-------APKL-----VSNSLVAQMKPGAVIVDVAIDQGGCV 274 (370)
T ss_pred ---------ccCCHHHHHHHHccCCEEEEccccCCCC-------CCcC-----cCHHHHhcCCCCCEEEEEecCCCCCc
Confidence 0000123456788999999997554321 1110 11333455788999998886666554
No 206
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.89 E-value=0.0076 Score=63.96 Aligned_cols=101 Identities=15% Similarity=0.178 Sum_probs=67.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|.+|...+..++.. ..-.+|.+|++++++.+.+.+..
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~-------------------------~~~~~v~v~~r~~~~a~~~~~~~--------- 172 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAV-------------------------RDIERVRVYSRTFEKAYAFAQEI--------- 172 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc-------------------------CCccEEEEECCCHHHHHHHHHHH---------
Confidence 35799999999999888777650 02258999999999998776421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
............++++++.++|+|+.|+|.+. + + +. ..+++|+.|.--.+-.|+.
T Consensus 173 ---~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~----------p----~---i~---~~l~~G~hV~~iGs~~p~~ 227 (325)
T PRK08618 173 ---QSKFNTEIYVVNSADEAIEEADIIVTVTNAKT----------P----V---FS---EKLKKGVHINAVGSFMPDM 227 (325)
T ss_pred ---HHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC----------c----c---hH---HhcCCCcEEEecCCCCccc
Confidence 00001124556788889999999999976542 1 1 11 3457888876554444433
No 207
>PLN02494 adenosylhomocysteinase
Probab=96.88 E-value=0.0053 Score=67.68 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=63.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH-HHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ-WNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~-~~~~~~~~~e~~~ 83 (598)
..+|+|+|+|.+|..+|..+.. .|.+|+++|+++.+... ...|
T Consensus 254 GKtVvViGyG~IGr~vA~~aka---------------------------~Ga~VIV~e~dp~r~~eA~~~G--------- 297 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKA---------------------------AGARVIVTEIDPICALQALMEG--------- 297 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCchhhHHHHhcC---------
Confidence 3689999999999999999988 68899999999876443 3332
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
... .+.+++++.+|++|.+.++.. + +.......++++.++++.+-
T Consensus 298 -----------~~v-v~leEal~~ADVVI~tTGt~~---------------v--I~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 298 -----------YQV-LTLEDVVSEADIFVTTTGNKD---------------I--IMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred -----------Cee-ccHHHHHhhCCEEEECCCCcc---------------c--hHHHHHhcCCCCCEEEEcCC
Confidence 111 245678899999998755431 0 12445567899999987554
No 208
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.84 E-value=0.0026 Score=69.44 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=64.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE------EEeCCHHHHHHHHcCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT------VVDKSEERIRQWNSNKLPI 78 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~------~~d~~~~~~~~~~~~~~~~ 78 (598)
.++|+|||+|..|...|..|.. .|++|+ ++|.+...-+.+.+.
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrd---------------------------SGvnVvvglr~~~id~~~~s~~kA~~d---- 84 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRD---------------------------SGLDISYALRKEAIAEKRASWRKATEN---- 84 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCcc---------------------------ccceeEEeccccccccccchHHHHHhc----
Confidence 3689999999999999988888 788888 555444443333221
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
++.. .++.++++.||+|++.+|... -..+.+.|.+.++++.++..+--
T Consensus 85 ---------------GF~v-~~~~Ea~~~ADvVviLlPDt~---------------q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 85 ---------------GFKV-GTYEELIPQADLVINLTPDKQ---------------HSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred ---------------CCcc-CCHHHHHHhCCEEEEcCChHH---------------HHHHHHHHHhhCCCCCEEEecCC
Confidence 1222 457889999999999976431 23344889999999998876433
No 209
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.80 E-value=0.0032 Score=69.15 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=54.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||+|.||..++..|+. .| .+|++++++.++.+.+.+...
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~---------------------------~G~~~V~v~~rs~~ra~~la~~~g------- 225 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLR---------------------------KGVGKILIANRTYERAEDLAKELG------- 225 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHH---------------------------CCCCEEEEEeCCHHHHHHHHHHcC-------
Confidence 3689999999999999999998 67 799999999998876653210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.......+..+++.++|+||.|++.|.
T Consensus 226 ---------~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 226 ---------GEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred ---------CeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 001112355667889999999986653
No 210
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.78 E-value=0.0027 Score=57.36 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=19.1
Q ss_pred eEEEEC-CChhHHHHHHHHHH
Q psy11160 7 HICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 7 ~I~viG-~G~vG~~~a~~la~ 26 (598)
||+||| .||+|..+...|++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~ 21 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAE 21 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHhc
Confidence 799999 99999999999998
No 211
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.76 E-value=0.008 Score=57.93 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=53.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||+ |.+|..++.-..+ .||+|+.+-||++++...+ +.. +.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~---------------------------RGHeVTAivRn~~K~~~~~-~~~-i~q---- 47 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALK---------------------------RGHEVTAIVRNASKLAARQ-GVT-ILQ---- 47 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHh---------------------------CCCeeEEEEeChHhccccc-cce-eec----
Confidence 69999998 9999999998888 8999999999999997652 321 111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
..++--+...+++..-|+||.+....
T Consensus 48 --------~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 48 --------KDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred --------ccccChhhhHhhhcCCceEEEeccCC
Confidence 11221233456789999999998655
No 212
>PRK11579 putative oxidoreductase; Provisional
Probab=96.76 E-value=0.0077 Score=64.30 Aligned_cols=71 Identities=17% Similarity=0.313 Sum_probs=48.5
Q ss_pred CCCceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYE 80 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e 80 (598)
....||+|||+|.+|.. .+..+.. + .+.+++ ++|+++++... . .
T Consensus 2 ~~~irvgiiG~G~i~~~~~~~~~~~-~-------------------------~~~~l~av~d~~~~~~~~---~-~---- 47 (346)
T PRK11579 2 SDKIRVGLIGYGYASKTFHAPLIAG-T-------------------------PGLELAAVSSSDATKVKA---D-W---- 47 (346)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhh-C-------------------------CCCEEEEEECCCHHHHHh---h-C----
Confidence 34579999999999974 4555555 1 456665 58999877542 1 0
Q ss_pred CChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 81 PGLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
....+.+|+++.++ +.|+|+||+|+..
T Consensus 48 ------------~~~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 48 ------------PTVTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred ------------CCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 11345678888885 5799999987654
No 213
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.75 E-value=0.009 Score=63.53 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=56.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|||+|.+|...+..++. .....+|.+|++++++.+.+.+...
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~-------------------------~~~~~~V~v~~R~~~~a~~l~~~~~-------- 178 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTL-------------------------VRPIREVRVWARDAAKAEAYAADLR-------- 178 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-------------------------cCCCCEEEEEcCCHHHHHHHHHHHh--------
Confidence 3689999999999998888875 1123689999999999998864210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
+.....+....|+++++.+||+|+.|+|..
T Consensus 179 ----~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 179 ----AELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred ----hccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 000112455688888999999999997653
No 214
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.74 E-value=0.014 Score=63.98 Aligned_cols=84 Identities=20% Similarity=0.361 Sum_probs=54.9
Q ss_pred ceEEEECCChhHHHH-HHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC-HHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGPT-CSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS-EERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~-~~~~~~~~~~~~~~~e~~~ 83 (598)
|||+|||+|..-.+- ...|+...+.. .+-+|+++|+| +++++....- .
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l----------------------~~~ei~L~Did~~~rl~~v~~~--------~ 50 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEEL----------------------PVTELVLVDIDEEEKLEIVGAL--------A 50 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccC----------------------CCCEEEEecCChHHHHHHHHHH--------H
Confidence 699999999975532 23344311111 45799999999 8887654320 1
Q ss_pred HHHHhhhc-CCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
..++++.- +-.+..|+|.++|+.+||+||++...+.
T Consensus 51 ~~~~~~~~~~~~v~~t~d~~~al~gadfVi~~~~vg~ 87 (419)
T cd05296 51 KRMVKKAGLPIKVHLTTDRREALEGADFVFTQIRVGG 87 (419)
T ss_pred HHHHHhhCCCeEEEEeCCHHHHhCCCCEEEEEEeeCC
Confidence 11222211 2368899999999999999999986543
No 215
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.72 E-value=0.0036 Score=59.48 Aligned_cols=105 Identities=19% Similarity=0.333 Sum_probs=67.8
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
++|+++|+ ......+++.|.+.|++|.+||+.... .. .+. ..+...++++.++++++|+
T Consensus 2 ~~Ig~IGl----------G~mG~~~a~~L~~~g~~v~~~d~~~~~--~~-~~~--------~~g~~~~~s~~e~~~~~dv 60 (163)
T PF03446_consen 2 MKIGFIGL----------GNMGSAMARNLAKAGYEVTVYDRSPEK--AE-ALA--------EAGAEVADSPAEAAEQADV 60 (163)
T ss_dssp BEEEEE------------SHHHHHHHHHHHHTTTEEEEEESSHHH--HH-HHH--------HTTEEEESSHHHHHHHBSE
T ss_pred CEEEEEch----------HHHHHHHHHHHHhcCCeEEeeccchhh--hh-hhH--------HhhhhhhhhhhhHhhcccc
Confidence 48999998 468899999999999999999965322 21 111 0145788999999999999
Q ss_pred EEEEeeccc-hhhccHHH--HHhccCCCcEEEecCCCCCh------hhhhhcccee
Q psy11160 475 IVVCTEWDE-FVTLDYKR--IYEGMMKPAYIFDGRKILNH------DALLDIGFNV 521 (598)
Q Consensus 475 lii~t~~~~-f~~ld~~~--l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y 521 (598)
++++..++. .++. +.. +...+.+..+|+|...+-.. +.+.+.|+.|
T Consensus 61 vi~~v~~~~~v~~v-~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~ 115 (163)
T PF03446_consen 61 VILCVPDDDAVEAV-LFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRY 115 (163)
T ss_dssp EEE-SSSHHHHHHH-HHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEE
T ss_pred eEeecccchhhhhh-hhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcccee
Confidence 999988854 2221 111 55566667799999887532 3333456555
No 216
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.67 E-value=0.039 Score=58.24 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=51.7
Q ss_pred CCceEEEECCChh-HHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC---ceEEEEeCCHHHHHHHHcCCCCCC
Q psy11160 4 TISHICCIGAGYV-GGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN---IQVTVVDKSEERIRQWNSNKLPIY 79 (598)
Q Consensus 4 ~~~~I~viG~G~v-G~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~v~~~d~~~~~~~~~~~~~~~~~ 79 (598)
+++||+|||+|.+ +...+..+.. .+ .-|.++|+++++.+.+.+...
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~---------------------------~~~~~~~vav~d~~~~~a~~~a~~~~--- 51 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAA---------------------------LGGGLELVAVVDRDPERAEAFAEEFG--- 51 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHh---------------------------CCCceEEEEEecCCHHHHHHHHHHcC---
Confidence 3579999999944 4567777777 22 346667999999887764210
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCCCC
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTPTK 120 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp~~ 120 (598)
.. ...+|+++.+++ .|+|+||+|+..+
T Consensus 52 -------------~~-~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 52 -------------IA-KAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred -------------CC-cccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 01 466788888875 5899999887653
No 217
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.67 E-value=0.0062 Score=64.05 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=68.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|.+|...+..+..- +.-.+|.+|++++++.+.+.+...
T Consensus 125 ~~~v~IiGaG~qa~~~~~al~~~-------------------------~~~~~v~v~~r~~~~a~~~a~~~~-------- 171 (304)
T PRK07340 125 PGDLLLIGTGVQARAHLEAFAAG-------------------------LPVRRVWVRGRTAASAAAFCAHAR-------- 171 (304)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh-------------------------CCCCEEEEEcCCHHHHHHHHHHHH--------
Confidence 36899999999999999998751 022589999999999888764210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
. ...... ..+.++++.+||+|+.|+|.+. | +.. ..+++++.|..-++-.|+..
T Consensus 172 ----~-~~~~~~-~~~~~~av~~aDiVitaT~s~~----------P----l~~------~~~~~g~hi~~iGs~~p~~~ 224 (304)
T PRK07340 172 ----A-LGPTAE-PLDGEAIPEAVDLVVTATTSRT----------P----VYP------EAARAGRLVVAVGAFTPDMA 224 (304)
T ss_pred ----h-cCCeeE-ECCHHHHhhcCCEEEEccCCCC----------c----eeC------ccCCCCCEEEecCCCCCCcc
Confidence 0 001122 4678889999999999976542 1 111 12478888877666666543
No 218
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.66 E-value=0.039 Score=56.94 Aligned_cols=162 Identities=10% Similarity=0.076 Sum_probs=90.3
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCC-HHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKS-EERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~-~~~~~~~~~~~~~~~e~~ 82 (598)
+||+|+| +|.||..++..+... +++++++ +|++ +++..+ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--------------------------~~~elvav~d~~~~~~~~~-----------~ 44 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--------------------------EGLQLVAAFERHGSSLQGT-----------D 44 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--------------------------CCCEEEEEEecCCccccCC-----------C
Confidence 6999999 699999999999871 5666555 6743 322110 0
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC-CchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST-VPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST-v~~~ 161 (598)
..++... ...+...++|+++...++|++|.+++.. .. .+.+...+..++-||..+| ..+.
T Consensus 45 ~~~~~~~-~~~gv~~~~d~~~l~~~~DvVIdfT~p~---------------~~---~~~~~~al~~g~~vVigttg~~~e 105 (266)
T TIGR00036 45 AGELAGI-GKVGVPVTDDLEAVETDPDVLIDFTTPE---------------GV---LNHLKFALEHGVRLVVGTTGFSEE 105 (266)
T ss_pred HHHhcCc-CcCCceeeCCHHHhcCCCCEEEECCChH---------------HH---HHHHHHHHHCCCCEEEECCCCCHH
Confidence 0000000 0013556788876645689999996432 12 2333444556665665555 3333
Q ss_pred HHHHHHHHHhhccCCccc----ccCCCCCchHHHHHHHHHHHHhcCCceEEEec------cccchhhhhHHHHHhh
Q psy11160 162 AAESIMNVLKANHKTNVQ----FQGRAADLKYVEAAARMIAEIATDNKIVVEKS------TVPVRAAESIMNVLKA 227 (598)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~----~~~~~~dl~~l~~A~~~Ia~~l~~~~lvv~eS------TvP~gtt~~~~~~L~~ 227 (598)
..+++.. .++.++. +.+...=...|....+..++.+..=++-|+|. -.|-||...+.+.+..
T Consensus 106 ~~~~l~~----aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~dieI~E~HH~~K~DaPSGTA~~l~~~i~~ 177 (266)
T TIGR00036 106 DKQELAD----LAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEIIELHHRHKKDAPSGTALKTAEMIAE 177 (266)
T ss_pred HHHHHHH----HHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCCCEEeeeeccCCCCCCCCHHHHHHHHHHHH
Confidence 4444433 3233211 12223334456677777777775445566665 5688998777666554
No 219
>PLN02306 hydroxypyruvate reductase
Probab=96.63 E-value=0.0067 Score=65.84 Aligned_cols=105 Identities=12% Similarity=0.180 Sum_probs=64.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HHHHHcCCCC-CCCCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IRQWNSNKLP-IYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~~-~~e~~~ 83 (598)
++|+|||+|.+|..+|..++. + -|.+|++||+.... .+........ ..+.+.
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~-----------------------~---fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~ 219 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVE-----------------------G---FKMNLIYYDLYQSTRLEKFVTAYGQFLKANGE 219 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----------------------c---CCCEEEEECCCCchhhhhhhhhhccccccccc
Confidence 689999999999999999864 1 47899999987532 1111000000 000000
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
. ....+...++++.+++||+|++++|-...+ ..+. -+.....++++.++|+.+
T Consensus 220 ~-------~~~~~~~~~L~ell~~sDiV~lh~Plt~~T-----------~~li--n~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 220 Q-------PVTWKRASSMEEVLREADVISLHPVLDKTT-----------YHLI--NKERLALMKKEAVLVNAS 272 (386)
T ss_pred c-------cccccccCCHHHHHhhCCEEEEeCCCChhh-----------hhhc--CHHHHHhCCCCeEEEECC
Confidence 0 011223457899999999999997642211 1121 135567789999999865
No 220
>PRK06046 alanine dehydrogenase; Validated
Probab=96.62 E-value=0.014 Score=61.86 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=68.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|.+|...+..++. .+ .-.+|.+||+++++.+.+.+...
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~-~~------------------------~i~~v~v~~r~~~~~~~~~~~~~-------- 175 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSE-VF------------------------DLEEVRVYDRTKSSAEKFVERMS-------- 175 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHh-hC------------------------CceEEEEECCCHHHHHHHHHHHH--------
Confidence 3589999999999999998886 11 22589999999999888764210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
+..+.......+++++++ +|+|++|+|+.. |- +. .+.+++++.|..-++-.|+.
T Consensus 176 ----~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~----------P~---~~------~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 176 ----SVVGCDVTVAEDIEEACD-CDILVTTTPSRK----------PV---VK------AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred ----hhcCceEEEeCCHHHHhh-CCEEEEecCCCC----------cE---ec------HHHcCCCCEEEecCCCCCcc
Confidence 000123456778888886 999999976532 11 11 23567888876555555543
No 221
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.62 E-value=0.005 Score=67.75 Aligned_cols=72 Identities=19% Similarity=0.287 Sum_probs=54.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||+|.||..++..|.. .|. +|+++++++++.+.+.+...
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~---------------------------~G~~~V~v~~r~~~ra~~la~~~g------- 227 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAE---------------------------KGVRKITVANRTLERAEELAEEFG------- 227 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHH---------------------------CCCCeEEEEeCCHHHHHHHHHHcC-------
Confidence 3689999999999999999988 676 89999999999877654210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.......+..+++.++|+||.|++.|.
T Consensus 228 ---------~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 228 ---------GEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred ---------CcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 011112345567889999999987653
No 222
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.62 E-value=0.044 Score=60.35 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=53.8
Q ss_pred ceEEEECCChh-HHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYV-GGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~v-G~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||+|||.|.. ...+...|.+ .|+ + + ++-+|+++|+|+++.+.+..- ..
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~-~~~--------~-----------l--~~~ei~L~Did~~Rl~~v~~l--------~~ 50 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLK-TPE--------E-----------L--PISEVTLYDIDEERLDIILTI--------AK 50 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHc-Chh--------h-----------C--CCCEEEEEcCCHHHHHHHHHH--------HH
Confidence 59999999985 1123334444 110 0 1 568999999999998864320 01
Q ss_pred HHHhhh-cCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
.++++. .+-++..|+|.++|+++||+||.++..
T Consensus 51 ~~~~~~g~~~~v~~ttD~~~Al~gADfVi~~irv 84 (425)
T cd05197 51 RYVEEVGADIKFEKTMDLEDAIIDADFVINQFRV 84 (425)
T ss_pred HHHHhhCCCeEEEEeCCHHHHhCCCCEEEEeeec
Confidence 111211 123688999999999999999999754
No 223
>PLN00203 glutamyl-tRNA reductase
Probab=96.58 E-value=0.0052 Score=69.06 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=55.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||+|.||..++..|.. .|. +|++++++.++.+.+.+... +.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~---------------------------~G~~~V~V~nRs~era~~La~~~~-----g~ 313 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVS---------------------------KGCTKMVVVNRSEERVAALREEFP-----DV 313 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHh---------------------------CCCCeEEEEeCCHHHHHHHHHHhC-----CC
Confidence 4689999999999999999998 675 79999999999988774210 00
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
........+..+++.++|+||.|++.+
T Consensus 314 --------~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 314 --------EIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred --------ceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 001112245567889999999997654
No 224
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.58 E-value=0.0067 Score=64.06 Aligned_cols=88 Identities=9% Similarity=0.118 Sum_probs=61.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. -|.+|++||+.... ...
T Consensus 148 ktvgIiG~G~IG~~va~~l~~---------------------------fg~~V~~~~~~~~~--~~~------------- 185 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQA---------------------------LGMKVLYAEHKGAS--VCR------------- 185 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhc---------------------------CCCEEEEECCCccc--ccc-------------
Confidence 689999999999999988877 68899999875310 000
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
. . ..++++.++.||+|++++|-...+. .+. -+.....++++.++|+.|--
T Consensus 186 -------~--~-~~~l~ell~~sDiv~l~~Plt~~T~-----------~li--~~~~l~~mk~ga~lIN~aRG 235 (314)
T PRK06932 186 -------E--G-YTPFEEVLKQADIVTLHCPLTETTQ-----------NLI--NAETLALMKPTAFLINTGRG 235 (314)
T ss_pred -------c--c-cCCHHHHHHhCCEEEEcCCCChHHh-----------ccc--CHHHHHhCCCCeEEEECCCc
Confidence 0 0 1367889999999999987432211 111 13455678999999986543
No 225
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.55 E-value=0.029 Score=57.84 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=19.8
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
+||+|||+|.||..++..+.+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~ 22 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEH 22 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhh
Confidence 699999999999999999887
No 226
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.54 E-value=0.025 Score=59.78 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=71.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..+...+..+.. .++-.+|.+|++++++.+.+.+..
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~-------------------------v~~i~~v~v~~r~~~~a~~~~~~~--------- 173 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKN-------------------------VTDCRQLWVWGRSETALEEYRQYA--------- 173 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHh-------------------------cCCCCEEEEECCCHHHHHHHHHHH---------
Confidence 3679999999999999988887 113469999999999998876421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
++ ....+..+.+.++++++||+|+.|++... |- +. .+.++++..|.--++-.|+.
T Consensus 174 ---~~-~~~~v~~~~~~~~av~~ADIV~taT~s~~----------P~---~~------~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 174 ---QA-LGFAVNTTLDAAEVAHAANLIVTTTPSRE----------PL---LQ------AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred ---Hh-cCCcEEEECCHHHHhcCCCEEEEecCCCC----------ce---eC------HHHcCCCcEEEecCCCCccc
Confidence 00 01235667889999999999999965432 11 11 24567888887666655544
No 227
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.54 E-value=0.012 Score=61.77 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=57.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..|...+..++. ++ +-.+|.+|++++++.+.+.+..
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~-v~------------------------~i~~v~v~~r~~~~a~~f~~~~--------- 162 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMAS-VY------------------------NPKRIRVYSRNFDHARAFAERF--------- 162 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHh-cC------------------------CCCEEEEECCCHHHHHHHHHHH---------
Confidence 3689999999999999988887 11 3368999999999999876421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
.+..+..+....++++++.+||+|+.+++.
T Consensus 163 ---~~~~~~~v~~~~~~~eav~~aDIV~taT~s 192 (301)
T PRK06407 163 ---SKEFGVDIRPVDNAEAALRDADTITSITNS 192 (301)
T ss_pred ---HHhcCCcEEEeCCHHHHHhcCCEEEEecCC
Confidence 110112466778999999999999998654
No 228
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.52 E-value=0.011 Score=57.07 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=63.4
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ .+-+..+++.|..-|.+|.+|||........... .+ ...++.++++
T Consensus 33 ~l~g~tvgIiG~----------G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~-----------~~-~~~~l~ell~ 90 (178)
T PF02826_consen 33 ELRGKTVGIIGY----------GRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF-----------GV-EYVSLDELLA 90 (178)
T ss_dssp -STTSEEEEEST----------SHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT-----------TE-EESSHHHHHH
T ss_pred ccCCCEEEEEEE----------cCCcCeEeeeeecCCceeEEecccCChhhhcccc-----------cc-eeeehhhhcc
Confidence 578999999998 4788999999999999999999988755411111 22 3468999999
Q ss_pred CCCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r 506 (598)
.+|+|+++.+-- +-++ +|-+.+ +.|++..+++..-
T Consensus 91 ~aDiv~~~~plt~~T~~li~~~~l-~~mk~ga~lvN~a 127 (178)
T PF02826_consen 91 QADIVSLHLPLTPETRGLINAEFL-AKMKPGAVLVNVA 127 (178)
T ss_dssp H-SEEEE-SSSSTTTTTSBSHHHH-HTSTTTEEEEESS
T ss_pred hhhhhhhhhccccccceeeeeeee-eccccceEEEecc
Confidence 999999988732 2233 454444 4566555666544
No 229
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.51 E-value=0.0098 Score=62.91 Aligned_cols=89 Identities=7% Similarity=0.102 Sum_probs=62.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
++|+|||+|.+|..+|..+.. -|.+|++||+... .. .
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~---------------------------fgm~V~~~~~~~~------~~--~-------- 185 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEA---------------------------FGMRVLIGQLPGR------PA--R-------- 185 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhh---------------------------CCCEEEEECCCCC------cc--c--------
Confidence 589999999999999999877 6889999998521 00 0
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
.. ..++++.++.||+|++++|-...+. .+ +-+.....++++.++|+.|--..
T Consensus 186 ---------~~-~~~l~ell~~sDiv~l~lPlt~~T~-----------~l--i~~~~~~~mk~ga~lIN~aRG~v 237 (317)
T PRK06487 186 ---------PD-RLPLDELLPQVDALTLHCPLTEHTR-----------HL--IGARELALMKPGALLINTARGGL 237 (317)
T ss_pred ---------cc-ccCHHHHHHhCCEEEECCCCChHHh-----------cC--cCHHHHhcCCCCeEEEECCCccc
Confidence 00 1367889999999999987432211 11 11345567899999998664433
No 230
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.50 E-value=0.014 Score=61.71 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=52.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..+...+..++.-+ +-.+|.+|++++++.+.+.+..
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~-------------------------~i~~v~v~~r~~~~~~~~~~~~--------- 173 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVR-------------------------PIKEVRVYSRSPERAEAFAARL--------- 173 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS---------------------------SEEEEE-SSHHHHHHHHHHH---------
T ss_pred CceEEEECCCHHHHHHHHHHHHhC-------------------------CceEEEEEccChhHHHHHHHhh---------
Confidence 358999999999999999888721 3369999999999998876421
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
.+ ....+..+.|.++++++||+|+.|++..
T Consensus 174 ---~~-~~~~v~~~~~~~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 174 ---RD-LGVPVVAVDSAEEAVRGADIIVTATPST 203 (313)
T ss_dssp ---HC-CCTCEEEESSHHHHHTTSSEEEE----S
T ss_pred ---cc-ccccceeccchhhhcccCCEEEEccCCC
Confidence 11 1235788899999999999999996543
No 231
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.50 E-value=0.032 Score=49.33 Aligned_cols=70 Identities=24% Similarity=0.466 Sum_probs=49.2
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCC-C-CCChHH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPI-Y-EPGLDE 85 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~-~-e~~~~~ 85 (598)
|.|+|.|.+|..++..|.+ .+++|+++|.++++++.+.....++ + ++.-.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~---------------------------~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~ 53 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE---------------------------GGIDVVVIDRDPERVEELREEGVEVIYGDATDPE 53 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH---------------------------TTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHH
T ss_pred eEEEcCCHHHHHHHHHHHh---------------------------CCCEEEEEECCcHHHHHHHhcccccccccchhhh
Confidence 6799999999999999999 6789999999999999988533222 1 111111
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
.++ +.-+++|+.++++++.
T Consensus 54 ~l~-------------~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 54 VLE-------------RAGIEKADAVVILTDD 72 (116)
T ss_dssp HHH-------------HTTGGCESEEEEESSS
T ss_pred HHh-------------hcCccccCEEEEccCC
Confidence 111 1136789999999643
No 232
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.47 E-value=0.016 Score=60.95 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=51.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|||.|.|+ |++|..++..|.+ +||+|++++|++++...+......+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~---------------------------~g~~V~~l~R~~~~~~~l~~~~v~~v----- 48 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALD---------------------------EGYQVRCLVRNLRKASFLKEWGAELV----- 48 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHH---------------------------CCCeEEEEEcChHHhhhHhhcCCEEE-----
Confidence 58999995 9999999999999 89999999999876654432111110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
...+.-..+..++++++|+||-+++.
T Consensus 49 -------~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 49 -------YGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred -------ECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 01121123456678999999988653
No 233
>KOG2380|consensus
Probab=96.42 E-value=0.0098 Score=62.07 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=64.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.+|+|||.|.||.-+|..|.+ +||.|++.||++ -+.+.+..
T Consensus 53 l~IaIIGfGnmGqflAetli~---------------------------aGh~li~hsRsd--yssaa~~y---------- 93 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLID---------------------------AGHGLICHSRSD--YSSAAEKY---------- 93 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHh---------------------------cCceeEecCcch--hHHHHHHh----------
Confidence 589999999999999999999 999999999986 22222210
Q ss_pred HHhhhcCCceEEecCHHHHh-ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-cCCCcEEEEecCCc
Q psy11160 86 VVKKTRDVNLFFSTDIKSAI-QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI-ATDNKIVVEKSTVP 159 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ivv~~STv~ 159 (598)
+....+++.+.+ +..|+|+.||.. ..++.+++..... ++.+++++.-.++-
T Consensus 94 --------g~~~ft~lhdlcerhpDvvLlctsi---------------lsiekilatypfqrlrrgtlfvdvlSvK 146 (480)
T KOG2380|consen 94 --------GSAKFTLLHDLCERHPDVVLLCTSI---------------LSIEKILATYPFQRLRRGTLFVDVLSVK 146 (480)
T ss_pred --------cccccccHHHHHhcCCCEEEEEehh---------------hhHHHHHHhcCchhhccceeEeeeeecc
Confidence 011223343333 678999999732 1356666666555 77889998776663
No 234
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.41 E-value=0.02 Score=60.83 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=56.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+++|||+|.+|...+..|+.. .+ -+|++|++++++.+.+.+...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~--------------------------~~i~~v~V~~R~~~~a~~~a~~~~------- 175 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLV--------------------------RDIRSARIWARDSAKAEALALQLS------- 175 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHh--------------------------CCccEEEEECCCHHHHHHHHHHHH-------
Confidence 35899999999999999999750 34 579999999999988764210
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
...........++++++.+||+|+.|+|.+
T Consensus 176 -----~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 176 -----SLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred -----hhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 000112445678888999999999997553
No 235
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.39 E-value=0.015 Score=66.86 Aligned_cols=74 Identities=18% Similarity=0.354 Sum_probs=54.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCC--CCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIY--EPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~--e~~ 82 (598)
.++|.|+|.|.+|..+|..|.+ .|++++++|.|+++++.+++...+.+ ++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~---------------------------~g~~vvvID~d~~~v~~~~~~g~~v~~GDat 452 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA---------------------------NKMRITVLERDISAVNLMRKYGYKVYYGDAT 452 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh---------------------------CCCCEEEEECCHHHHHHHHhCCCeEEEeeCC
Confidence 3689999999999999999999 89999999999999999875333321 111
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
-.+.++ +.-+++||.++++++.+
T Consensus 453 ~~~~L~-------------~agi~~A~~vv~~~~d~ 475 (601)
T PRK03659 453 QLELLR-------------AAGAEKAEAIVITCNEP 475 (601)
T ss_pred CHHHHH-------------hcCCccCCEEEEEeCCH
Confidence 111111 11267899999997554
No 236
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.38 E-value=0.014 Score=60.73 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=53.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|.|||+|-+|.+++..|+. .|. +|+++||+.++.+.+.+...... +
T Consensus 128 k~vlIlGaGGaaraia~aL~~---------------------------~G~~~I~I~nR~~~ka~~la~~l~~~~-~--- 176 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLT---------------------------LGVERLTIFDVDPARAAALADELNARF-P--- 176 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHH---------------------------cCCCEEEEECCCHHHHHHHHHHHHhhC-C---
Confidence 589999999999999999998 675 89999999999988764210000 0
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
........+..+.+.++|+||-|+|..
T Consensus 177 -------~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 177 -------AARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred -------CeEEEeccchHhhhCCCCEEEECCcCC
Confidence 011222234445678999999997654
No 237
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.36 E-value=0.02 Score=52.05 Aligned_cols=98 Identities=15% Similarity=0.243 Sum_probs=57.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHH-HHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEE-RIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~-~~~~~~~~~~~~~e~~ 82 (598)
|||+|+|+ |.||..++..+.+. .++++. ++|+++. .+ | ..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--------------------------~~~~lv~~v~~~~~~~~-----g------~d 43 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--------------------------PGFELVGAVDRKPSAKV-----G------KD 43 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--------------------------TTEEEEEEEETTTSTTT-----T------SB
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--------------------------CCcEEEEEEecCCcccc-----c------ch
Confidence 69999999 99999999999882 677754 4677651 11 1 11
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
+.++.... ..+...++++++.+..+|++|-.. +|. .+.+.++... +.+.-+|.-+|--
T Consensus 44 ~g~~~~~~-~~~~~v~~~l~~~~~~~DVvIDfT-~p~--------------~~~~~~~~~~---~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 44 VGELAGIG-PLGVPVTDDLEELLEEADVVIDFT-NPD--------------AVYDNLEYAL---KHGVPLVIGTTGF 101 (124)
T ss_dssp CHHHCTSS-T-SSBEBS-HHHHTTH-SEEEEES--HH--------------HHHHHHHHHH---HHT-EEEEE-SSS
T ss_pred hhhhhCcC-CcccccchhHHHhcccCCEEEEcC-ChH--------------HhHHHHHHHH---hCCCCEEEECCCC
Confidence 11111111 234667899999999999988775 331 2333333333 3466677767654
No 238
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.34 E-value=0.028 Score=55.53 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=30.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~ 64 (598)
..||+|+|+|-+|+.+|..|+. .|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~---------------------------~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLAR---------------------------AGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHH---------------------------cCCCEEEEECCC
Confidence 3689999999999999999999 787 79999998
No 239
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.31 E-value=0.034 Score=61.33 Aligned_cols=42 Identities=14% Similarity=0.372 Sum_probs=39.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
.++|.|+|+|.+|..++..|.+ .|++|+++|.++++++.+.+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~---------------------------~~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEK---------------------------EGYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHHH
Confidence 4789999999999999999999 79999999999999998875
No 240
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=96.27 E-value=0.0047 Score=67.00 Aligned_cols=43 Identities=30% Similarity=0.362 Sum_probs=38.0
Q ss_pred ceEEEECCChhHH-HHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC
Q psy11160 6 SHICCIGAGYVGG-PTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK 75 (598)
Q Consensus 6 ~~I~viG~G~vG~-~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~ 75 (598)
|||+++|+|.+|. -++..|++ .|++|+++|++++.++.+++..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~---------------------------~g~~V~~vd~~~~~v~aL~~qg 44 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLAD---------------------------NGFEVTFVDVNQELIDALNKRK 44 (381)
T ss_pred CceEEECCchhhHHHHHHHHHh---------------------------CCCeEEEEECCHHHHHHHhcCC
Confidence 6899999999998 55778887 8999999999999999999653
No 241
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.20 E-value=0.033 Score=59.56 Aligned_cols=85 Identities=14% Similarity=0.250 Sum_probs=52.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHc--CCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNS--NKLPIYEP 81 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~--~~~~~~e~ 81 (598)
++||+|+|+|.||..++..+... ++++|++ .|.+++....+.. | .+.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~--------------------------~d~eLvav~d~~~~~~~~la~~~G-~~~~~~ 53 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ--------------------------PDMELVGVAKTKPDYEARVAVEKG-YPLYVA 53 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC--------------------------CCcEEEEEECCChHHHHHHHHhcC-CCcccc
Confidence 36999999999999999888761 4556555 4556665554443 3 222211
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
..+........++....++.+.+.++|+||.|+|.
T Consensus 54 -~~~~~~~~~~~~i~V~~~~~el~~~vDVVIdaT~~ 88 (341)
T PRK04207 54 -DPEREKAFEEAGIPVAGTIEDLLEKADIVVDATPG 88 (341)
T ss_pred -CccccccccCCceEEcCChhHhhccCCEEEECCCc
Confidence 11111000113466777777777899999999654
No 242
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.18 E-value=0.021 Score=61.11 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.0
Q ss_pred CceEEEECC-ChhHHHHHHHHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~ 26 (598)
|+||+|||+ |++|..++..|..
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~ 24 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLN 24 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHc
Confidence 379999997 9999999999987
No 243
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.14 E-value=0.015 Score=60.34 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=69.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++.|+|+|-+|..++..|+. .| .+|++++|+.++.+.+.+.....
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~---------------------------~g~~~V~v~~R~~~~a~~l~~~~~~~------ 170 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLD---------------------------LGVAEITIVNRTVERAEELAKLFGAL------ 170 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHH---------------------------cCCCEEEEEeCCHHHHHHHHHHhhhc------
Confidence 579999999999999999998 77 79999999999988876421100
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
....+..+..+.+.++|+||-|+|.+..++. +...+ ....++++.+|++-..-|..|.
T Consensus 171 --------~~~~~~~~~~~~~~~~DivInaTp~g~~~~~-------~~~~~------~~~~l~~~~~v~DivY~P~~T~ 228 (278)
T PRK00258 171 --------GKAELDLELQEELADFDLIINATSAGMSGEL-------PLPPL------PLSLLRPGTIVYDMIYGPLPTP 228 (278)
T ss_pred --------cceeecccchhccccCCEEEECCcCCCCCCC-------CCCCC------CHHHcCCCCEEEEeecCCCCCH
Confidence 0011111333567889999999876653210 00001 0134577889998877666553
No 244
>PRK07574 formate dehydrogenase; Provisional
Probab=96.12 E-value=0.025 Score=61.34 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=70.6
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-...+++.|...|.+|.+|||.....+....+ ++....++.++++.
T Consensus 190 L~gktVGIvG~----------G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-----------g~~~~~~l~ell~~ 248 (385)
T PRK07574 190 LEGMTVGIVGA----------GRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-----------GLTYHVSFDSLVSV 248 (385)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-----------CceecCCHHHHhhc
Confidence 57899999998 3678899999999999999999975333222211 23445789999999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+|+|+++..... -++ ++ .+..+.|++..++++.-+ +.|.+.+
T Consensus 249 aDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~iVDe~AL 294 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFD-ADVLSRMKRGSYLVNTARGKIVDRDAV 294 (385)
T ss_pred CCEEEEcCCCCHHHHHHhC-HHHHhcCCCCcEEEECCCCchhhHHHH
Confidence 999999887543 222 34 344556777677877654 4555333
No 245
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.12 E-value=0.013 Score=57.79 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
|||+|||. |.||..++..|.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~ 22 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDD 22 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHh
Confidence 58999999 9999999999998
No 246
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.12 E-value=0.027 Score=60.24 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=57.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..+...+..+.. .++-.+|.+|++++++.+.+.+... ++
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~-------------------------vr~i~~V~v~~r~~~~a~~~~~~~~---~~--- 177 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKA-------------------------LLGIEEIRLYDIDPAATAKLARNLA---GP--- 177 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHH-------------------------hCCceEEEEEeCCHHHHHHHHHHHH---hc---
Confidence 3579999999999999887776 1134699999999999988764311 00
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~t 117 (598)
...+....+.++++++||+|+.|+++
T Consensus 178 -------~~~v~~~~~~~~av~~ADIIvtaT~S 203 (346)
T PRK07589 178 -------GLRIVACRSVAEAVEGADIITTVTAD 203 (346)
T ss_pred -------CCcEEEeCCHHHHHhcCCEEEEecCC
Confidence 12356678999999999999999753
No 247
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.12 E-value=0.034 Score=63.36 Aligned_cols=73 Identities=15% Similarity=0.340 Sum_probs=52.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCC-CC-CCCh
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLP-IY-EPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~-~~-e~~~ 83 (598)
.||.|+|+|.+|..+|..|.+ .|++|+++|.|+++++.+++...+ ++ ++.-
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~---------------------------~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~ 470 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA---------------------------AGIPLVVIETSRTRVDELRERGIRAVLGNAAN 470 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH---------------------------CCCCEEEEECCHHHHHHHHHCCCeEEEcCCCC
Confidence 589999999999999999999 899999999999999998753222 11 1111
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
++.++ +.-+++||.++++++.+
T Consensus 471 ~~~L~-------------~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 471 EEIMQ-------------LAHLDCARWLLLTIPNG 492 (558)
T ss_pred HHHHH-------------hcCccccCEEEEEcCCh
Confidence 11111 11257899999997543
No 248
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.11 E-value=0.026 Score=59.81 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=67.1
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|||+|+ ..-.-.+++.|..-|.+|..|||+.+.+.... .......++.+.++.
T Consensus 140 l~gkTvGIiG~----------G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~------------~~~~~~~~Ld~lL~~ 197 (324)
T COG0111 140 LAGKTVGIIGL----------GRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV------------DGVVGVDSLDELLAE 197 (324)
T ss_pred ccCCEEEEECC----------CHHHHHHHHHHHhCCCeEEEECCCCchhhhcc------------ccceecccHHHHHhh
Confidence 57999999998 36788999999999999999999877542211 122445789999999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~ 507 (598)
+|+|+++++--. -+. ++.+.+. .|++..+++.+.+
T Consensus 198 sDiv~lh~PlT~eT~g~i~~~~~a-~MK~gailIN~aR 234 (324)
T COG0111 198 ADILTLHLPLTPETRGLINAEELA-KMKPGAILINAAR 234 (324)
T ss_pred CCEEEEcCCCCcchhcccCHHHHh-hCCCCeEEEECCC
Confidence 999999886532 233 4555544 5766656665543
No 249
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.10 E-value=0.029 Score=58.07 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=65.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~~~~e~~~~ 84 (598)
.+|+|||.|.-|..-|.+|.+ .|.+|++==+.... .+...+
T Consensus 19 K~iaIIGYGsQG~ahalNLRD---------------------------SGlnViiGlr~g~~s~~kA~~----------- 60 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRD---------------------------SGLNVIIGLRKGSSSWKKAKE----------- 60 (338)
T ss_pred CeEEEEecChHHHHHHhhhhh---------------------------cCCcEEEEecCCchhHHHHHh-----------
Confidence 689999999999999999999 89887764442222 222221
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHH-HHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAAR-MIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~ivv~~STv 158 (598)
.++. .-+++++++.||+|++-+|.-. -.++.+ .|.+.++.+..+....-.
T Consensus 61 --------dGf~-V~~v~ea~k~ADvim~L~PDe~---------------q~~vy~~~I~p~Lk~G~aL~FaHGf 111 (338)
T COG0059 61 --------DGFK-VYTVEEAAKRADVVMILLPDEQ---------------QKEVYEKEIAPNLKEGAALGFAHGF 111 (338)
T ss_pred --------cCCE-eecHHHHhhcCCEEEEeCchhh---------------HHHHHHHHhhhhhcCCceEEecccc
Confidence 2233 3567889999999999976532 234554 899999999987665443
No 250
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.09 E-value=0.041 Score=61.62 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=72.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.++.|+|+|.+|...+..+.. .|..|+++|+++++.+..++-.....+....+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~---------------------------lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e 217 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANS---------------------------LGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE 217 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHcCCeEEeccccc
Confidence 589999999999999988888 78889999999999888775211111111110
Q ss_pred HHhhhcCCceEEec-C--------HHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 86 VVKKTRDVNLFFST-D--------IKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 86 ~~~~~~~~~~~~~~-~--------~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
- .....+..+..+ + ..+.++++|++|.|+--|-.+ .| .-+.++..+.++++.+||+-|
T Consensus 218 ~-g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-------aP-----~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 218 E-GGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-------AP-----KLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred c-ccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-------CC-----eeehHHHHhhCCCCCEEEEee
Confidence 0 000011111111 1 234578899999998222211 11 112344567889999999988
Q ss_pred CCchHH
Q psy11160 157 TVPVRA 162 (598)
Q Consensus 157 Tv~~~~ 162 (598)
.-+-|.
T Consensus 285 ~d~GGn 290 (511)
T TIGR00561 285 AEQGGN 290 (511)
T ss_pred eCCCCC
Confidence 766664
No 251
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.08 E-value=0.016 Score=55.59 Aligned_cols=54 Identities=20% Similarity=0.447 Sum_probs=44.4
Q ss_pred CceEEEECCChh-HHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYV-GGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~v-G~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|.|||.|.| |.++|..|.. .|.+|++.+++.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~---------------------------~g~~V~v~~r~~------------------ 78 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLN---------------------------RNATVTVCHSKT------------------ 78 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhh---------------------------CCCEEEEEECCc------------------
Confidence 368999999985 9999999999 788899999752
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
.+..+.+.+||+||.+++.|
T Consensus 79 ---------------~~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 79 ---------------KNLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred ---------------hhHHHHHhhCCEEEEcCCCC
Confidence 12345788999999998776
No 252
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.07 E-value=0.018 Score=54.99 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=67.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC---
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG--- 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~--- 82 (598)
.+|+|+|.|.+|...+..+.. .|++|+.+|.++++.++++.......+..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~---------------------------lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 73 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKG---------------------------LGAEVVVPDERPERLRQLESLGAYFIEVDYED 73 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHH---------------------------TT-EEEEEESSHHHHHHHHHTTTEESEETTTT
T ss_pred eEEEEECCCHHHHHHHHHHhH---------------------------CCCEEEeccCCHHHHHhhhcccCceEEEcccc
Confidence 589999999999999999999 89999999999999988775322111000
Q ss_pred ------hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 83 ------LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 83 ------~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
.+....... -........+.++.+|+||.+.--+... .| .-+.++-.+.++++.+|++-|
T Consensus 74 ~~~~~~~~~~~~~~~--~~~~~~~f~~~i~~~d~vI~~~~~~~~~-------~P-----~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 74 HLERKDFDKADYYEH--PESYESNFAEFIAPADIVIGNGLYWGKR-------AP-----RLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp TTTSB-CCHHHCHHH--CCHHHHHHHHHHHH-SEEEEHHHBTTSS---------------SBEHHHHHTSSTTEEEEETT
T ss_pred cccccccchhhhhHH--HHHhHHHHHHHHhhCcEEeeecccCCCC-------CC-----EEEEhHHhhccCCCceEEEEE
Confidence 000000000 0011123456788999999876444321 11 112344456688999999876
Q ss_pred CCc
Q psy11160 157 TVP 159 (598)
Q Consensus 157 Tv~ 159 (598)
.=.
T Consensus 140 ~D~ 142 (168)
T PF01262_consen 140 CDQ 142 (168)
T ss_dssp GGG
T ss_pred ecC
Confidence 543
No 253
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.04 E-value=0.016 Score=60.13 Aligned_cols=98 Identities=22% Similarity=0.394 Sum_probs=70.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.||+|||.|.+|.--|....- -|-+|+..|+|.+|++++..-
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~g---------------------------lgA~Vtild~n~~rl~~ldd~----------- 210 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIG---------------------------LGADVTILDLNIDRLRQLDDL----------- 210 (371)
T ss_pred ccEEEECCccccchHHHHHhc---------------------------cCCeeEEEecCHHHHhhhhHh-----------
Confidence 589999999999998877666 688999999999999886631
Q ss_pred HHhhhcCCceEEe--cCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 86 VVKKTRDVNLFFS--TDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 86 ~~~~~~~~~~~~~--~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
.... -....+ .++++++.++|++|=+|-.|-.+ .| +-+.++..+.++++.++|+-.
T Consensus 211 -f~~r--v~~~~st~~~iee~v~~aDlvIgaVLIpgak-------aP-----kLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 211 -FGGR--VHTLYSTPSNIEEAVKKADLVIGAVLIPGAK-------AP-----KLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred -hCce--eEEEEcCHHHHHHHhhhccEEEEEEEecCCC-------Cc-----eehhHHHHHhcCCCcEEEEEE
Confidence 1000 011112 34678899999999888666432 22 224577788899999998743
No 254
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.03 E-value=0.017 Score=63.35 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=55.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|.|||+|-||..+|..|+. .| .++++++|+.++.+.+.+....
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~---------------------------~g~~~I~V~nRt~~ra~~La~~~~~------ 227 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTA---------------------------LAPKQIMLANRTIEKAQKITSAFRN------ 227 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH---------------------------cCCCEEEEECCCHHHHHHHHHHhcC------
Confidence 3689999999999999999998 66 4899999999999887752100
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.......+..+.+.++|+||.|++.|.
T Consensus 228 ---------~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 228 ---------ASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred ---------CeEecHHHHHHHhccCCEEEECcCCCC
Confidence 011222445567899999999987764
No 255
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.02 E-value=0.028 Score=60.26 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.6
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
+||+|+|+ |++|..+...|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~ 22 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLN 22 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 58999999 9999999999987
No 256
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.97 E-value=0.046 Score=53.32 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=52.3
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+++.|+|. |.+|..++..|++ .|++|++++++.++.+.+.+.... ..
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~---------------------------~g~~V~l~~R~~~~~~~l~~~l~~--~~-- 76 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAR---------------------------EGARVVLVGRDLERAQKAADSLRA--RF-- 76 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH---------------------------CCCEEEEEcCCHHHHHHHHHHHHh--hc--
Confidence 368999996 9999999999999 789999999999988776532100 00
Q ss_pred HHHHhhhcCCceEEe--cC---HHHHhccCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFS--TD---IKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~--~~---~~~~~~~adviii~v~tp 118 (598)
...+... .+ ..++++++|+||.++|.+
T Consensus 77 --------~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 77 --------GEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred --------CCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 0111111 22 245788999999886544
No 257
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.95 E-value=0.041 Score=63.53 Aligned_cols=74 Identities=14% Similarity=0.331 Sum_probs=53.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCC--CCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIY--EPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~--e~~ 82 (598)
..+|.|+|.|.+|..+|..|.+ .|++++++|.|+++++.+++...+++ ++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~---------------------------~g~~vvvID~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS---------------------------SGVKMTVLDHDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh---------------------------CCCCEEEEECCHHHHHHHHhcCCeEEEEeCC
Confidence 3689999999999999999999 89999999999999999875333322 111
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
-.+.++ +.-+++||.++++++.+
T Consensus 453 ~~~~L~-------------~agi~~A~~vvv~~~d~ 475 (621)
T PRK03562 453 RMDLLE-------------SAGAAKAEVLINAIDDP 475 (621)
T ss_pred CHHHHH-------------hcCCCcCCEEEEEeCCH
Confidence 111111 11356899999997543
No 258
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.93 E-value=0.022 Score=63.60 Aligned_cols=92 Identities=14% Similarity=0.265 Sum_probs=64.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++++|+|+|-+|.+++..|++ .|++|++++++.++.+.+.+...
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~---------------------------~G~~V~i~~R~~~~~~~la~~~~-------- 376 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLAR---------------------------AGAELLIFNRTKAHAEALASRCQ-------- 376 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHHhc--------
Confidence 3689999999999999999999 78999999999998887764210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
.......+.. .+.++|+||.|+|.... +.+. + . .+|++.++.|+.|.
T Consensus 377 --------~~~~~~~~~~-~l~~~DiVInatP~g~~--------------~~~~---l----~--~~v~D~~Y~P~~T~ 423 (477)
T PRK09310 377 --------GKAFPLESLP-ELHRIDIIINCLPPSVT--------------IPKA---F----P--PCVVDINTLPKHSP 423 (477)
T ss_pred --------cceechhHhc-ccCCCCEEEEcCCCCCc--------------chhH---H----h--hhEEeccCCCCCCH
Confidence 0000011121 25789999999865421 1111 1 1 38899999998776
No 259
>PLN03139 formate dehydrogenase; Provisional
Probab=95.92 E-value=0.036 Score=60.17 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=70.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|+|+|+ .+-+..+++.|...|.+|.+|||.....+..... ++....++.++++
T Consensus 196 ~L~gktVGIVG~----------G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-----------g~~~~~~l~ell~ 254 (386)
T PLN03139 196 DLEGKTVGTVGA----------GRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-----------GAKFEEDLDAMLP 254 (386)
T ss_pred CCCCCEEEEEee----------cHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-----------CceecCCHHHHHh
Confidence 357999999997 3677899999999999999999974322221111 2234568999999
Q ss_pred CCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 471 NTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 471 ~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
.+|+|+++....+ .++ ++- .+.+.|++..+++++-+ +.|.+.+
T Consensus 255 ~sDvV~l~lPlt~~T~~li~~-~~l~~mk~ga~lIN~aRG~iVDe~AL 301 (386)
T PLN03139 255 KCDVVVINTPLTEKTRGMFNK-ERIAKMKKGVLIVNNARGAIMDTQAV 301 (386)
T ss_pred hCCEEEEeCCCCHHHHHHhCH-HHHhhCCCCeEEEECCCCchhhHHHH
Confidence 9999999887433 333 343 45567777778888644 4565443
No 260
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.88 E-value=0.064 Score=56.16 Aligned_cols=96 Identities=13% Similarity=0.193 Sum_probs=58.4
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHH--HHHHcCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERI--RQWNSNKLP 77 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~--~~~~~~~~~ 77 (598)
||++ .||+|||+|.+|..+...+.+ . .+.++. ++|+|++.. +..++-..+
T Consensus 1 ~m~k-lrVAIIGtG~IGt~hm~~l~~-~-------------------------~~velvAVvdid~es~gla~A~~~Gi~ 53 (302)
T PRK08300 1 MMSK-LKVAIIGSGNIGTDLMIKILR-S-------------------------EHLEPGAMVGIDPESDGLARARRLGVA 53 (302)
T ss_pred CCCC-CeEEEEcCcHHHHHHHHHHhc-C-------------------------CCcEEEEEEeCChhhHHHHHHHHcCCC
Confidence 5554 699999999999997777765 1 455655 578887642 332322122
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHh-----ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEE
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAI-----QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV 152 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iv 152 (598)
.+ ..++++.+ .+.|+||+++|...+ .+.....+..|+.|
T Consensus 54 ~~------------------~~~ie~LL~~~~~~dIDiVf~AT~a~~H------------------~e~a~~a~eaGk~V 97 (302)
T PRK08300 54 TS------------------AEGIDGLLAMPEFDDIDIVFDATSAGAH------------------VRHAAKLREAGIRA 97 (302)
T ss_pred cc------------------cCCHHHHHhCcCCCCCCEEEECCCHHHH------------------HHHHHHHHHcCCeE
Confidence 22 23344343 468999999754321 12233345678888
Q ss_pred EEecCCc
Q psy11160 153 VEKSTVP 159 (598)
Q Consensus 153 v~~STv~ 159 (598)
++.|...
T Consensus 98 ID~sPA~ 104 (302)
T PRK08300 98 IDLTPAA 104 (302)
T ss_pred EECCccc
Confidence 8887654
No 261
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.87 E-value=0.04 Score=59.78 Aligned_cols=77 Identities=10% Similarity=0.250 Sum_probs=57.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+++|||+|..+......++.-.|+ --+|.+|++++++.+.+.+..
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~------------------------i~~V~v~~r~~~~a~~f~~~~--------- 201 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPG------------------------IDTIKIKGRGQKSLDSFATWV--------- 201 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCC------------------------ccEEEEECCCHHHHHHHHHHH---------
Confidence 36899999999999999988872111 258999999999998876421
Q ss_pred HHHhhhcC-C-ceEEecCHHHHhccCcEEEEecCC
Q psy11160 85 EVVKKTRD-V-NLFFSTDIKSAIQKAQLIFISVNT 117 (598)
Q Consensus 85 ~~~~~~~~-~-~~~~~~~~~~~~~~adviii~v~t 117 (598)
..... . .+..+.+.++++++||+|+.|++.
T Consensus 202 ---~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s 233 (379)
T PRK06199 202 ---AETYPQITNVEVVDSIEEVVRGSDIVTYCNSG 233 (379)
T ss_pred ---HHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence 00000 1 266788999999999999999653
No 262
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.86 E-value=0.024 Score=61.67 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=57.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..++.|||+|-||.-.|..|+. .| .+|++.+|+.++...+.+...
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~---------------------------~g~~~i~IaNRT~erA~~La~~~~------- 223 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAE---------------------------KGVKKITIANRTLERAEELAKKLG------- 223 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHh---------------------------CCCCEEEEEcCCHHHHHHHHHHhC-------
Confidence 3689999999999999999999 67 699999999999998875311
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.....-++..+.+.++|+||.|+..|.
T Consensus 224 ---------~~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 224 ---------AEAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred ---------CeeecHHHHHHhhhhCCEEEEecCCCc
Confidence 112233456678999999999976553
No 263
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=95.86 E-value=0.035 Score=58.89 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=74.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
...++|||+|..+......+.. ....-+|.+|+++++..+.+.+...
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~-------------------------v~~~~~I~i~~r~~~~~e~~a~~l~-------- 176 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKA-------------------------VRDIREIRVYSRDPEAAEAFAARLR-------- 176 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHh-------------------------hCCccEEEEEcCCHHHHHHHHHHHH--------
Confidence 3578999999999999999988 1145689999999999998774210
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
+..........+.++++++||+|+.|+|+.. |- + -.+.++++..|...++-.|+..
T Consensus 177 ----~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~----------Pi---l------~~~~l~~G~hI~aiGad~p~k~ 232 (330)
T COG2423 177 ----KRGGEAVGAADSAEEAVEGADIVVTATPSTE----------PV---L------KAEWLKPGTHINAIGADAPGKR 232 (330)
T ss_pred ----hhcCccceeccCHHHHhhcCCEEEEecCCCC----------Ce---e------cHhhcCCCcEEEecCCCCcccc
Confidence 0001135678899999999999999976532 11 1 1345678888877666666554
No 264
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.85 E-value=0.028 Score=58.38 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=57.3
Q ss_pred CceEEEECCChh-HHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYV-GGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~v-G~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||.|.+ |.|+|..|.. .|..|+++..
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~---------------------------~~atVt~~hs-------------------- 190 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQ---------------------------AGATVTICHS-------------------- 190 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHH---------------------------CCCEEEEecC--------------------
Confidence 368999999888 9999999998 7889998642
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
-|.++.+.+++||+||.++|+|-- +. ...++++.+||+-++-
T Consensus 191 -------------~t~~l~~~~~~ADIVV~avG~~~~--------------i~------~~~ik~gavVIDVGin 232 (285)
T PRK14189 191 -------------KTRDLAAHTRQADIVVAAVGKRNV--------------LT------ADMVKPGATVIDVGMN 232 (285)
T ss_pred -------------CCCCHHHHhhhCCEEEEcCCCcCc--------------cC------HHHcCCCCEEEEcccc
Confidence 134566788999999999987731 11 1567899999986653
No 265
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.76 E-value=0.095 Score=56.73 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=67.7
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|||+|+ .+-+-.+++.|...|.+|.+|||...... . . ....++.++++
T Consensus 113 ~L~gktvGIIG~----------G~IG~~vA~~l~a~G~~V~~~dp~~~~~~-------------~--~-~~~~~L~ell~ 166 (378)
T PRK15438 113 SLHDRTVGIVGV----------GNVGRRLQARLEALGIKTLLCDPPRADRG-------------D--E-GDFRSLDELVQ 166 (378)
T ss_pred CcCCCEEEEECc----------CHHHHHHHHHHHHCCCEEEEECCcccccc-------------c--c-cccCCHHHHHh
Confidence 468999999998 36778899999999999999999542110 0 0 12357889999
Q ss_pred CCCEEEEEeeccc------hhhccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 471 NTHAIVVCTEWDE------FVTLDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 471 ~adalii~t~~~~------f~~ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
.+|+|++++.... +.=+|-+. .+.|++..++|++.+ +.|.+.+
T Consensus 167 ~sDiI~lh~PLt~~g~~~T~~li~~~~-l~~mk~gailIN~aRG~vVDe~AL 217 (378)
T PRK15438 167 EADILTFHTPLFKDGPYKTLHLADEKL-IRSLKPGAILINACRGAVVDNTAL 217 (378)
T ss_pred hCCEEEEeCCCCCCcccccccccCHHH-HhcCCCCcEEEECCCchhcCHHHH
Confidence 9999998887432 22245444 445776667777655 5665444
No 266
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.75 E-value=0.088 Score=59.09 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=68.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCC--CCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIY--EPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~--e~~ 82 (598)
-.||.|+|+|.+|+..+..+.. .|-+|+++|+++++.+..++-...+. ++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~---------------------------lGA~V~a~D~~~~rle~aeslGA~~v~i~~~ 217 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGS---------------------------LGAIVRAFDTRPEVAEQVESMGAEFLELDFE 217 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHHcCCeEEEeccc
Confidence 3689999999999998888777 67899999999999998875221110 110
Q ss_pred hHHHHhhhcCCce-EEecCH--------HHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 83 LDEVVKKTRDVNL-FFSTDI--------KSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~--------~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
-++... .+.. ..+.+. .+.++++|++|.|+..|..+ .+ ..+.++..+.++++.+|+
T Consensus 218 e~~~~~---~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~-------aP-----~lit~~~v~~mkpGgvIV 282 (509)
T PRK09424 218 EEGGSG---DGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKP-------AP-----KLITAEMVASMKPGSVIV 282 (509)
T ss_pred cccccc---cchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCccc-------Cc-----chHHHHHHHhcCCCCEEE
Confidence 000000 0000 011221 12235799999999776421 11 112355566778888888
Q ss_pred EecCC
Q psy11160 154 EKSTV 158 (598)
Q Consensus 154 ~~STv 158 (598)
+-+.-
T Consensus 283 dvg~~ 287 (509)
T PRK09424 283 DLAAE 287 (509)
T ss_pred EEccC
Confidence 77653
No 267
>KOG0069|consensus
Probab=95.71 E-value=0.069 Score=56.55 Aligned_cols=103 Identities=10% Similarity=0.120 Sum_probs=68.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++|+|+|+|.+|..+|..|.. .|..+.-+.+++...+...+-
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~---------------------------Fg~~i~y~~r~~~~~~~~~~~---------- 204 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKP---------------------------FGCVILYHSRTQLPPEEAYEY---------- 204 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhh---------------------------ccceeeeecccCCchhhHHHh----------
Confidence 3689999999999999999998 563344444544434333211
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHH-HHHHHHcCCCcEEEEecCCchHHH
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAA-RMIAEIATDNKIVVEKSTVPVRAA 163 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~ivv~~STv~~~~~ 163 (598)
... ..|..+.+.++|+|++|.|-.. .....+ +.+...++++.++|+.+--....-
T Consensus 205 ---------~~~-~~d~~~~~~~sD~ivv~~pLt~--------------~T~~liNk~~~~~mk~g~vlVN~aRG~iide 260 (336)
T KOG0069|consen 205 ---------YAE-FVDIEELLANSDVIVVNCPLTK--------------ETRHLINKKFIEKMKDGAVLVNTARGAIIDE 260 (336)
T ss_pred ---------ccc-ccCHHHHHhhCCEEEEecCCCH--------------HHHHHhhHHHHHhcCCCeEEEeccccccccH
Confidence 011 3456678899999999975422 223333 678889999999998766666555
Q ss_pred HHHHH
Q psy11160 164 ESIMN 168 (598)
Q Consensus 164 ~~~~~ 168 (598)
+.+..
T Consensus 261 ~~l~e 265 (336)
T KOG0069|consen 261 EALVE 265 (336)
T ss_pred HHHHH
Confidence 55544
No 268
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.69 E-value=0.21 Score=55.04 Aligned_cols=116 Identities=13% Similarity=0.216 Sum_probs=67.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH-HHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE-ERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~-~~~~~~~~~~~~~~e~~~ 83 (598)
.++|.|+|.|.+|.++|..|++ .|++|+++|++. +.++....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~~---------- 47 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKK---------------------------LGAKVILTDEKEEDQLKEALE---------- 47 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCchHHHHHHHH----------
Confidence 4789999999999999999999 899999999985 33322110
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcCCCcEEEEec
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~ivv~~S 156 (598)
++ .+ ....+.......+...++|+||.+...+.+ .+.+.+.++ -.+.+....+ ..+|-+..
T Consensus 48 -~l-~~-~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~--------~~~~~~a~~~~i~~~~~~~~~~~~~~-~~vI~ITG 115 (450)
T PRK14106 48 -EL-GE-LGIELVLGEYPEEFLEGVDLVVVSPGVPLD--------SPPVVQAHKKGIEVIGEVELAYRFSK-APIVAITG 115 (450)
T ss_pred -HH-Hh-cCCEEEeCCcchhHhhcCCEEEECCCCCCC--------CHHHHHHHHCCCcEEeHHHHHHhhcC-CCEEEEeC
Confidence 00 00 001122222223345789999998654321 122221111 0012222233 67888888
Q ss_pred CCchHHHHHHHHH
Q psy11160 157 TVPVRAAESIMNV 169 (598)
Q Consensus 157 Tv~~~~~~~~~~~ 169 (598)
|.--.||.++...
T Consensus 116 S~GKTTt~~~l~~ 128 (450)
T PRK14106 116 TNGKTTTTTLLGE 128 (450)
T ss_pred CCchHHHHHHHHH
Confidence 8877777665543
No 269
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=95.69 E-value=0.058 Score=56.18 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=57.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHH--HHHcCCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIR--QWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~--~~~~~~~~~~e~~ 82 (598)
++|+|||+|.+|.-++..+.. . .+.++. ++|+++++.. ..++-..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~-~-------------------------~~~elvaV~d~d~es~~la~A~~~Gi------ 49 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLR-S-------------------------EHLEMVAMVGIDPESDGLARARELGV------ 49 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHh-C-------------------------CCcEEEEEEeCCcccHHHHHHHHCCC------
Confidence 589999999999988777765 1 455655 4788876532 2221111
Q ss_pred hHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
-...+++++.++ +.|+||+++|+..+ .+.....+..|+.|++++...
T Consensus 50 ------------~~~~~~~e~ll~~~dIDaV~iaTp~~~H------------------~e~a~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 50 ------------KTSAEGVDGLLANPDIDIVFDATSAKAH------------------ARHARLLAELGKIVIDLTPAA 98 (285)
T ss_pred ------------CEEECCHHHHhcCCCCCEEEECCCcHHH------------------HHHHHHHHHcCCEEEECCccc
Confidence 123445665554 57899999876542 122334456788888777654
No 270
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.66 E-value=0.054 Score=61.33 Aligned_cols=100 Identities=24% Similarity=0.324 Sum_probs=70.6
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+..+++.|...|.+|.+|||....+.... + ++....++.++++.
T Consensus 136 l~gktvgIiG~----------G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-~-----------g~~~~~~l~ell~~ 193 (525)
T TIGR01327 136 LYGKTLGVIGL----------GRIGSIVAKRAKAFGMKVLAYDPYISPERAEQ-L-----------GVELVDDLDELLAR 193 (525)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHHhCCCEEEEECCCCChhHHHh-c-----------CCEEcCCHHHHHhh
Confidence 57899999998 36778999999999999999999754432211 1 22445689999999
Q ss_pred CCEEEEEeecc-chhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 472 THAIVVCTEWD-EFVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 472 adalii~t~~~-~f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+|+|+++.+.. +-++ ++-+ ..+.|++..+++++.+ +.|.+.+
T Consensus 194 aDvV~l~lPlt~~T~~li~~~-~l~~mk~ga~lIN~aRG~~vde~aL 239 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAE-ELAKMKKGVIIVNCARGGIIDEAAL 239 (525)
T ss_pred CCEEEEccCCChhhccCcCHH-HHhcCCCCeEEEEcCCCceeCHHHH
Confidence 99999998865 3333 3433 3446777667777654 4565433
No 271
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.05 Score=59.39 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=56.8
Q ss_pred CceEEEECCChhHHHHHHH-HHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSV-IALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..||+|||.|..+.|--.. +..+.|.+ ++.++.++|+++++.+....- .
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l----------------------~~~el~L~Did~~r~~~i~~~--------~ 52 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEEL----------------------PVRELALYDIDEERLKIIAIL--------A 52 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccC----------------------CcceEEEEeCCHHHHHHHHHH--------H
Confidence 4699999999999885321 22212222 678999999999998843310 1
Q ss_pred HHHHhhh-cCCceEEecCHHHHhccCcEEEEecC
Q psy11160 84 DEVVKKT-RDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
+.++++. .+.++..|+|.++|+++||+|+.++.
T Consensus 53 ~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi~~~r 86 (442)
T COG1486 53 KKLVEEAGAPVKVEATTDRREALEGADFVITQIR 86 (442)
T ss_pred HHHHHhhCCCeEEEEecCHHHHhcCCCEEEEEEe
Confidence 1223221 23458899999999999999999974
No 272
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.62 E-value=0.089 Score=56.20 Aligned_cols=40 Identities=20% Similarity=0.421 Sum_probs=33.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~ 72 (598)
++|.|||+|-+|+++|..|+. .|+ +++++|.|.-....++
T Consensus 25 ~~VlIiG~GglGs~va~~La~---------------------------aGvg~i~lvD~D~ve~sNL~ 65 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVR---------------------------AGIGKLTIADRDYVEWSNLQ 65 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHH---------------------------cCCCEEEEEcCCcccccccC
Confidence 689999999999999999999 786 8999999864444443
No 273
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.54 E-value=0.054 Score=56.35 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=56.6
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||.|. ||.|+|..|.. .|..|+++++..
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~---------------------------~gatVtv~~s~t------------------ 192 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQ---------------------------KNASVTILHSRS------------------ 192 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHH---------------------------CCCeEEEEeCCc------------------
Confidence 36899999988 99999999998 788999987531
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.++.+.+++||+||.+++.|.- +.. ..++++.+||+-++-
T Consensus 193 ---------------~~l~~~~~~ADIVIsAvg~p~~--------------i~~------~~vk~gavVIDvGi~ 232 (286)
T PRK14175 193 ---------------KDMASYLKDADVIVSAVGKPGL--------------VTK------DVVKEGAVIIDVGNT 232 (286)
T ss_pred ---------------hhHHHHHhhCCEEEECCCCCcc--------------cCH------HHcCCCcEEEEcCCC
Confidence 2355678999999999987731 111 246789999886653
No 274
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.54 E-value=0.048 Score=57.90 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=33.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d~~~~~~~~~~ 72 (598)
|+|.|.|+ |++|..++..|.. . |++|+++|++.++...+.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~---------------------------~~~~~V~~~~r~~~~~~~~~ 43 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILE---------------------------TTDWEVYGMDMQTDRLGDLV 43 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHh---------------------------CCCCeEEEEeCcHHHHHHhc
Confidence 68999997 9999999999987 4 699999999877655443
No 275
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.52 E-value=0.077 Score=54.43 Aligned_cols=67 Identities=9% Similarity=0.133 Sum_probs=47.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.+||++||+|++|..++..|... .. .+++ +.++++++++.+.+...
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~-----------------------~~-~~~~l~~V~~~~~~~~~~~~~~--------- 48 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLAD-----------------------AA-QPCQLAALTRNAADLPPALAGR--------- 48 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcC-----------------------CC-CceEEEEEecCCHHHHHHhhcc---------
Confidence 46999999999999999998760 00 2354 44578888887776532
Q ss_pred HHHHhhhcCCceEEecCHHHH-hccCcEEEEec
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSA-IQKAQLIFISV 115 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~adviii~v 115 (598)
....+|+++. ..++|+|+-|-
T Consensus 49 -----------~~~~~~l~~ll~~~~DlVVE~A 70 (267)
T PRK13301 49 -----------VALLDGLPGLLAWRPDLVVEAA 70 (267)
T ss_pred -----------CcccCCHHHHhhcCCCEEEECC
Confidence 2245566664 47789999884
No 276
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.51 E-value=0.12 Score=55.32 Aligned_cols=105 Identities=10% Similarity=0.183 Sum_probs=68.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEE-EEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVT-VVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~-~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
..||+|||+ .+|...+..+.. . . +++++ ++|+++++.+.+.+..
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~-------------------------~-~~~~eLvaV~d~~~erA~~~A~~~------- 48 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAA-------------------------A-PERFELAGILAQGSERSRALAHRL------- 48 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHh-------------------------C-CCCcEEEEEEcCCHHHHHHHHHHh-------
Confidence 368999999 569888888877 0 2 45655 5899999998877521
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRA 162 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~ 162 (598)
++...+|+++.+++.|+++|++||..-.. . . .+.....+..|+-|+.+=.+....
T Consensus 49 -----------gi~~y~~~eell~d~Di~~V~ipt~~P~~-------~---H----~e~a~~aL~aGkHVL~EKPla~~E 103 (343)
T TIGR01761 49 -----------GVPLYCEVEELPDDIDIACVVVRSAIVGG-------Q---G----SALARALLARGIHVLQEHPLHPRD 103 (343)
T ss_pred -----------CCCccCCHHHHhcCCCEEEEEeCCCCCCc-------c---H----HHHHHHHHhCCCeEEEcCCCCHHH
Confidence 12245788888888999999987632100 0 1 122334456777777776666555
Q ss_pred HHHHHH
Q psy11160 163 AESIMN 168 (598)
Q Consensus 163 ~~~~~~ 168 (598)
++++.+
T Consensus 104 a~el~~ 109 (343)
T TIGR01761 104 IQDLLR 109 (343)
T ss_pred HHHHHH
Confidence 555543
No 277
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.50 E-value=0.57 Score=50.56 Aligned_cols=259 Identities=12% Similarity=0.147 Sum_probs=134.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH----HHHcCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR----QWNSNKLPIYE 80 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~----~~~~~~~~~~e 80 (598)
|.+|-|+|.|.++..+|..|.+. -..+|-.+.|...+-+ .++++...+ +
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~--------------------------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~-~ 53 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH--------------------------GNCRVGIVGRESVRSQRFFEALARSDGLF-E 53 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc--------------------------cCceeeeecCcchhHHHHHHHHHhCCCEE-E
Confidence 36899999999999999999881 1235666666544433 344421111 1
Q ss_pred CChHHHHhhhcCCce---EEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHH-cC-CCcEEEEe
Q psy11160 81 PGLDEVVKKTRDVNL---FFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEI-AT-DNKIVVEK 155 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~-~~~ivv~~ 155 (598)
-....-......+.. .+..++++...+=|.+|+|||++ +-.+++++|... ++ =.++|.++
T Consensus 54 v~vqn~~h~~l~G~~~id~~~~~~~~i~g~WdtlILavtaD---------------AY~~VL~ql~~~~L~~vk~iVLvS 118 (429)
T PF10100_consen 54 VSVQNEQHQALSGECTIDHVFQDYEEIEGEWDTLILAVTAD---------------AYLDVLQQLPWEVLKRVKSIVLVS 118 (429)
T ss_pred EeecchhhhhhcCeEEhhHhhcCHHHhcccccEEEEEechH---------------HHHHHHHhcCHHHHhhCCEEEEEC
Confidence 111000001111211 13356776777889999998775 244555555432 22 25688888
Q ss_pred cCCchHHH-HHHHHHHhhccC--CcccccCCCCCchHHHHHHHHHHHHhcCCceE---EEeccccchhh-------hhHH
Q psy11160 156 STVPVRAA-ESIMNVLKANHK--TNVQFQGRAADLKYVEAAARMIAEIATDNKIV---VEKSTVPVRAA-------ESIM 222 (598)
Q Consensus 156 STv~~~~~-~~~~~~l~~~~~--~~~~~~~~~~dl~~l~~A~~~Ia~~l~~~~lv---v~eSTvP~gtt-------~~~~ 222 (598)
+|..-+.. +.+.. .... +---+...--|..++... +...| -++..+..|.| ..++
T Consensus 119 PtfGS~~lv~~~l~---~~~~~~EVISFStY~gdTr~~d~~---------~~~~vlt~~vK~kiYigSt~~~s~~~~~l~ 186 (429)
T PF10100_consen 119 PTFGSHLLVKGFLN---DLGPDAEVISFSTYYGDTRWSDGE---------QPNRVLTTAVKKKIYIGSTHSNSPELDKLC 186 (429)
T ss_pred cccchHHHHHHHHH---hcCCCceEEEeecccccceeccCC---------CcceehhhhhhceEEEEeCCCCChHHHHHH
Confidence 88754443 22222 1110 000000111111111110 11111 12333334433 2333
Q ss_pred HHHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEE---ecCchhHHH
Q psy11160 223 NVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHIL---TTNTWSSEL 299 (598)
Q Consensus 223 ~~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~---~~~~~~Ae~ 299 (598)
.+++. .|.+...+.+|.- .+++.+....+|+.+| ++- + |+.+|..-....-++ -.++-+-++
T Consensus 187 ~~~~~---~gI~~~~~~~pl~-AE~rNislYVHpplfm--ndf------s---L~aIF~~~~~~kYvYKL~PEGPIT~~~ 251 (429)
T PF10100_consen 187 RLLAQ---LGIQLEVMDNPLE-AESRNISLYVHPPLFM--NDF------S---LNAIFEEDGVPKYVYKLFPEGPITPTL 251 (429)
T ss_pred HHHHH---cCCeEEEeCChHh-hhhcccceecCChHhh--Chh------h---HHHHhCCCCCcceEEecCCCCCCCHHH
Confidence 34443 4677778888864 4677778888888765 221 2 456776644222122 134444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 300 SKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 300 ~Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ 340 (598)
+.-+ .....|+..+-.++|++.-.+++.++-+.
T Consensus 252 I~~M--------~~lw~Ei~~i~~~l~~~~~NLLkFm~ddN 284 (429)
T PF10100_consen 252 IRDM--------VQLWKEIMEILNKLGIEPFNLLKFMNDDN 284 (429)
T ss_pred HHHH--------HHHHHHHHHHHHHcCCCcchHHHHhccCC
Confidence 4322 33456888999999999999999998753
No 278
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.48 E-value=0.048 Score=59.16 Aligned_cols=96 Identities=19% Similarity=0.292 Sum_probs=57.5
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
++||+|+|+ ||+|..+...|... ++++|+.+..+...-+.+.... |.+
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~h--------------------------P~~el~~l~s~~saG~~i~~~~-----~~l 86 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANH--------------------------PDFEITVMTADRKAGQSFGSVF-----PHL 86 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhC--------------------------CCCeEEEEEChhhcCCCchhhC-----ccc
Confidence 469999998 99999999999881 4678888876533322221111 100
Q ss_pred HHHHhhhcCCceE-E-ecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLF-F-STDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~-~-~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
. ..... + ..+.. .++++|++|+|+|.. +...+.+.+..++.||+.|+-
T Consensus 87 ~-------~~~~~~~~~~~~~-~~~~~DvVf~Alp~~-------------------~s~~i~~~~~~g~~VIDlSs~ 136 (381)
T PLN02968 87 I-------TQDLPNLVAVKDA-DFSDVDAVFCCLPHG-------------------TTQEIIKALPKDLKIVDLSAD 136 (381)
T ss_pred c-------CccccceecCCHH-HhcCCCEEEEcCCHH-------------------HHHHHHHHHhCCCEEEEcCch
Confidence 0 00011 1 12222 368999999998642 223344444567888888875
No 279
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.42 E-value=0.16 Score=56.21 Aligned_cols=134 Identities=14% Similarity=0.176 Sum_probs=82.8
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeC--CHHHHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDK--SEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~--~~~~~~~~~~~~~~~~e~~ 82 (598)
-+|+|-|+ |.+|.+|.-.+|. +.++|.. +-..+.++|+ +.++++...- +
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~-------------------G~~fG~~-~~v~L~LlDi~~~~~~l~G~am--------D 175 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLAS-------------------GEVFGME-EEISIHLLDSPENLEKLKGLVM--------E 175 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhC-------------------CcccCCC-CeEEEEEEcCCCchhhHHHHHH--------H
Confidence 47999987 9999999999998 5666654 3467889999 5666654221 0
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.+...... .+...+++..+++++||+||++...|.++..++.+ -..+.+.+++..+.|.++.++..=|++--|-|..
T Consensus 176 L~D~a~pll-~~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD 254 (452)
T cd05295 176 VEDLAFPLL-RGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLN 254 (452)
T ss_pred HHHhHHhhc-CCcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHH
Confidence 111000001 23455566667999999999998888765432111 1223445556666677777644444444566776
Q ss_pred HHHHHHH
Q psy11160 162 AAESIMN 168 (598)
Q Consensus 162 ~~~~~~~ 168 (598)
+.-.++.
T Consensus 255 ~~t~i~~ 261 (452)
T cd05295 255 LKTSILI 261 (452)
T ss_pred HHHHHHH
Confidence 6655544
No 280
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.29 E-value=0.09 Score=56.05 Aligned_cols=99 Identities=16% Similarity=0.239 Sum_probs=69.1
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ ..-+..+++.|...|.+|.+|||...... ... . ... ..++.++++.
T Consensus 148 L~gktvgIiG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~-------~----~~~-~~~l~ell~~ 204 (333)
T PRK13243 148 VYGKTIGIIGF----------GRIGQAVARRAKGFGMRILYYSRTRKPEA-EKE-------L----GAE-YRPLEELLRE 204 (333)
T ss_pred CCCCEEEEECc----------CHHHHHHHHHHHHCCCEEEEECCCCChhh-HHH-------c----CCE-ecCHHHHHhh
Confidence 57999999998 36778899999999999999999754321 111 1 112 2578899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+|+|++++.... -++ ++- +..+.|++..++++..+ +.|.+.+
T Consensus 205 aDiV~l~lP~t~~T~~~i~~-~~~~~mk~ga~lIN~aRg~~vd~~aL 250 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINE-ERLKLMKPTAILVNTARGKVVDTKAL 250 (333)
T ss_pred CCEEEEeCCCChHHhhccCH-HHHhcCCCCeEEEECcCchhcCHHHH
Confidence 999999998754 222 343 44556777777777654 4555333
No 281
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.27 E-value=0.045 Score=58.97 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=33.9
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|+.+.|+|.|.|. |++|..++..|.+ .||+|+++|+..
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~---------------------------~G~~V~~v~r~~ 55 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKA---------------------------EGHYIIASDWKK 55 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHh---------------------------CCCEEEEEEecc
Confidence 5666789999998 9999999999999 899999999854
No 282
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.25 E-value=0.088 Score=56.06 Aligned_cols=94 Identities=17% Similarity=0.267 Sum_probs=67.6
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+..+++.|...|.+|.+|||...... . ...+..++.+++++
T Consensus 144 l~g~~VgIIG~----------G~IG~~vA~~L~~~G~~V~~~d~~~~~~~--~-------------~~~~~~~l~ell~~ 198 (330)
T PRK12480 144 VKNMTVAIIGT----------GRIGAATAKIYAGFGATITAYDAYPNKDL--D-------------FLTYKDSVKEAIKD 198 (330)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHHhCCCEEEEEeCChhHhh--h-------------hhhccCCHHHHHhc
Confidence 46889999998 36678899999999999999998653211 0 11344678899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecC-C-CCCh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGR-K-ILNH 511 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r-~-i~d~ 511 (598)
+|+|+++.+... .+. ++ ..+...|++..+++++. + +.|.
T Consensus 199 aDiVil~lP~t~~t~~li~-~~~l~~mk~gavlIN~aRG~~vd~ 241 (330)
T PRK12480 199 ADIISLHVPANKESYHLFD-KAMFDHVKKGAILVNAARGAVINT 241 (330)
T ss_pred CCEEEEeCCCcHHHHHHHh-HHHHhcCCCCcEEEEcCCccccCH
Confidence 999999998764 222 33 45566787766777764 3 4454
No 283
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.20 E-value=0.13 Score=53.34 Aligned_cols=110 Identities=18% Similarity=0.214 Sum_probs=56.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.||++||.|.+-++.- .|+++ ++.+..|.++|+|++.++..++=.. ...++
T Consensus 122 ~rVaFIGSGPLPlT~i-~la~~------------------------~~~~~~v~~iD~d~~A~~~a~~lv~--~~~~L-- 172 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSI-VLAKQ------------------------HGPGARVHNIDIDPEANELARRLVA--SDLGL-- 172 (276)
T ss_dssp -EEEEE---SS-HHHH-HHH--------------------------HTT--EEEEEESSHHHHHHHHHHHH-----HH--
T ss_pred ceEEEEcCCCcchHHH-HHHHH------------------------hCCCCeEEEEeCCHHHHHHHHHHHh--hcccc--
Confidence 4899999999988765 44430 1145689999999999886542000 00111
Q ss_pred HHhhhcCCceEEe-cCHH---HHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 86 VVKKTRDVNLFFS-TDIK---SAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 86 ~~~~~~~~~~~~~-~~~~---~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
..++++. .|.. ..+.+.|+|+++.--..+ -+.=.++++.+.+.+++|.+|+.+|.-..+
T Consensus 173 ------~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~-----------~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 173 ------SKRMSFITADVLDVTYDLKEYDVVFLAALVGMD-----------AEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp -------SSEEEEES-GGGG-GG----SEEEE-TT-S---------------SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred ------cCCeEEEecchhccccccccCCEEEEhhhcccc-----------cchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 2344443 3332 235788999999643321 112367889999999999999998765443
No 284
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.20 E-value=0.19 Score=54.52 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=66.0
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.+++|||+|+ .+-+-.+++.|...|.+|.+|||...... + . ....++.++++
T Consensus 113 ~l~gktvGIIG~----------G~IG~~va~~l~a~G~~V~~~Dp~~~~~~------------~---~-~~~~~l~ell~ 166 (381)
T PRK00257 113 DLAERTYGVVGA----------GHVGGRLVRVLRGLGWKVLVCDPPRQEAE------------G---D-GDFVSLERILE 166 (381)
T ss_pred CcCcCEEEEECC----------CHHHHHHHHHHHHCCCEEEEECCcccccc------------c---C-ccccCHHHHHh
Confidence 468999999998 35678899999999999999999532110 0 0 12357888999
Q ss_pred CCCEEEEEeecc------chhhccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 471 NTHAIVVCTEWD------EFVTLDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 471 ~adalii~t~~~------~f~~ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
.+|+|+++++.- .+.=+|-+. ...|++..+++.+.+ +.|.+.+
T Consensus 167 ~aDiV~lh~Plt~~g~~~T~~li~~~~-l~~mk~gailIN~aRG~vVde~AL 217 (381)
T PRK00257 167 ECDVISLHTPLTKEGEHPTRHLLDEAF-LASLRPGAWLINASRGAVVDNQAL 217 (381)
T ss_pred hCCEEEEeCcCCCCccccccccCCHHH-HhcCCCCeEEEECCCCcccCHHHH
Confidence 999999998863 223345444 445666556666443 4555443
No 285
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.16 E-value=0.14 Score=54.33 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=88.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCC-hhhhhhhhhcccccccCCCceEecCChhhhc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVE-PSQIIQDLKELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 469 (598)
.+++++|+|+|+ .+.+..++..|...|.+|.++++.-. ....... . ++.. .++.+++
T Consensus 14 ~L~gktIgIIG~----------GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~-------~----G~~~-~s~~eaa 71 (330)
T PRK05479 14 LIKGKKVAIIGY----------GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA-------D----GFEV-LTVAEAA 71 (330)
T ss_pred hhCCCEEEEEee----------HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH-------C----CCee-CCHHHHH
Confidence 357899999998 47889999999999999998765422 1111111 1 2232 3788999
Q ss_pred cCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecC--CCCChhhhhhccc----------------------eeeecc
Q psy11160 470 KNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR--KILNHDALLDIGF----------------------NVHTVI 525 (598)
Q Consensus 470 ~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r--~i~d~~~~~~~G~----------------------~y~~v~ 525 (598)
+.+|+|+++++.....++-.+.+...+++..+++=+- |+-........+. ....+-
T Consensus 72 ~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~ 151 (330)
T PRK05479 72 KWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI 151 (330)
T ss_pred hcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence 9999999999866554432245665565444443222 2211111000010 001111
Q ss_pred chhhhHHHHHHHHHHHHhcCCCCCCEEEEEeeecCCCC-CCcCCC
Q psy11160 526 DLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNT-GDTRES 569 (598)
Q Consensus 526 ~iN~~~~~~~~~~i~~~~~~~~~~~~i~v~GlafK~~~-~d~R~s 569 (598)
.++...-..-.+.+.+. ...+.+.+.+|+--+||++| .|+=..
T Consensus 152 av~~d~t~~a~~~a~~l-~~aiG~~~~g~~~ttf~~e~~~dl~ge 195 (330)
T PRK05479 152 AVHQDASGNAKDLALAY-AKGIGGTRAGVIETTFKEETETDLFGE 195 (330)
T ss_pred EecCCCCHHHHHHHHHH-HHHcCCCccceeeeeecccccccchhh
Confidence 12221111112222222 24567889999999999998 777655
No 286
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.33 Score=54.51 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=50.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|.|+|+|..|.+.+..|.. .|++|+++|.+++..+.+.+...
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~---------------------------~G~~v~~~D~~~~~~~~l~~~g~-------- 56 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTR---------------------------FGARPTVCDDDPDALRPHAERGV-------- 56 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHH---------------------------CCCEEEEEcCCHHHHHHHHhCCC--------
Confidence 3689999999999999998888 89999999988776655443110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
.+.......+.++++|+||.+-+-|.
T Consensus 57 ---------~~~~~~~~~~~l~~~D~VV~SpGi~~ 82 (488)
T PRK03369 57 ---------ATVSTSDAVQQIADYALVVTSPGFRP 82 (488)
T ss_pred ---------EEEcCcchHhHhhcCCEEEECCCCCC
Confidence 11111122345678999998865554
No 287
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.14 E-value=0.11 Score=55.05 Aligned_cols=99 Identities=9% Similarity=0.143 Sum_probs=68.0
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHH-HcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLL-YEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~-~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
+.+++|||+|+ .+-+..+++.|. .-|.+|.+|||....+.... + +.. ..++.++++
T Consensus 143 L~gktvGIiG~----------G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~-~-----------~~~-~~~l~ell~ 199 (323)
T PRK15409 143 VHHKTLGIVGM----------GRIGMALAQRAHFGFNMPILYNARRHHKEAEER-F-----------NAR-YCDLDTLLQ 199 (323)
T ss_pred CCCCEEEEEcc----------cHHHHHHHHHHHhcCCCEEEEECCCCchhhHHh-c-----------CcE-ecCHHHHHH
Confidence 47999999998 367888999997 88999999999764332111 0 112 348899999
Q ss_pred CCCEEEEEeeccch-hh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 471 NTHAIVVCTEWDEF-VT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 471 ~adalii~t~~~~f-~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
.+|+|+++.....- ++ ++.+. .+.|++..+++.+-+ +.|.+.+
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~-l~~mk~ga~lIN~aRG~vVde~AL 246 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQ-FAKMKSSAIFINAGRGPVVDENAL 246 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHH-HhcCCCCeEEEECCCccccCHHHH
Confidence 99999998876542 22 45444 446776667776543 4555333
No 288
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.12 E-value=0.079 Score=55.05 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=58.1
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++|+|||-|. +|.|+|..|.. .|..|+++...
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~---------------------------~~atVtv~hs~------------------- 192 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLL---------------------------AGCTVTVCHRF------------------- 192 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHH---------------------------CCCeEEEEECC-------------------
Confidence 36899999998 99999999998 78899998642
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++++.+++||+||.+++.|.- +. ...++++.+|++-.+-
T Consensus 193 --------------T~~l~~~~~~ADIvi~avG~p~~--------------v~------~~~vk~gavVIDvGin 233 (285)
T PRK10792 193 --------------TKNLRHHVRNADLLVVAVGKPGF--------------IP------GEWIKPGAIVIDVGIN 233 (285)
T ss_pred --------------CCCHHHHHhhCCEEEEcCCCccc--------------cc------HHHcCCCcEEEEcccc
Confidence 23566778999999999977731 11 2567899999986654
No 289
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.08 E-value=0.071 Score=57.71 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=47.7
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCC--CCCCCCChH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNK--LPIYEPGLD 84 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~--~~~~e~~~~ 84 (598)
|.|+|+|+||..++..|++. ..+ +|++.|+|.++++++.+.. ..+.-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~--------------------------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~---- 50 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR--------------------------GPFEEVTVADRNPEKAERLAEKLLGDRVEA---- 50 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT--------------------------TCE-EEEEEESSHHHHHHHHT--TTTTEEE----
T ss_pred CEEEcCcHHHHHHHHHHhcC--------------------------CCCCcEEEEECCHHHHHHHHhhccccceeE----
Confidence 78999999999999999981 235 9999999999999887531 11100
Q ss_pred HHHhhhcCCceEE--ecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFF--STDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~--~~~~~~~~~~adviii~v~tp 118 (598)
..+.. ..++.+.++++|+||-|+|..
T Consensus 51 --------~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 51 --------VQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp --------EE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred --------EEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 00000 012456789999999998643
No 290
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.07 E-value=0.048 Score=59.82 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=31.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
.+|.|||+|.+|.++|..|.+ .|++|+++|.++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~---------------------------~G~~V~g~D~~~~~ 38 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQ---------------------------KGVYVIGVDKSLEA 38 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHH---------------------------CCCEEEEEeCCccc
Confidence 689999999999999999999 89999999987654
No 291
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.00 E-value=0.33 Score=53.65 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=68.1
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH--HHHHHHcCCCCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE--RIRQWNSNKLPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~--~~~~~~~~~~~~ 78 (598)
+||..-.|.|||+|-.|.++|..|.+ .|++|+++|..+. ..+.+.+..
T Consensus 2 ~~~~~~~~~v~G~G~sG~s~a~~L~~---------------------------~G~~v~~~D~~~~~~~~~~l~~~~--- 51 (448)
T PRK03803 2 LMQSDGLHIVVGLGKTGLSVVRFLAR---------------------------QGIPFAVMDSREQPPGLDTLAREF--- 51 (448)
T ss_pred ccccCCeEEEEeecHhHHHHHHHHHh---------------------------CCCeEEEEeCCCCchhHHHHHhhc---
Confidence 36777789999999999999999998 8999999997542 112232100
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH----H---HHHHHHHcCCCcE
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA----A---ARMIAEIATDNKI 151 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~----~---~~~i~~~~~~~~i 151 (598)
+| ..+.......+.+.++|+||++-.-|.+ .+.+...++ + .+.+.... +..+
T Consensus 52 --~g----------~~~~~~~~~~~~~~~~d~vV~sp~i~~~--------~p~~~~a~~~~i~i~~~~el~~~~~-~~~~ 110 (448)
T PRK03803 52 --PD----------VELRCGGFDCELLVQASEIIISPGLALD--------TPALRAAAAMGIEVIGDIELFAREA-KAPV 110 (448)
T ss_pred --CC----------cEEEeCCCChHHhcCCCEEEECCCCCCC--------CHHHHHHHHCCCcEEEHHHHHHHhc-CCCE
Confidence 00 0111111122356789998887433321 222222221 0 11223333 5568
Q ss_pred EEEecCCchHHHHHHHHH
Q psy11160 152 VVEKSTVPVRAAESIMNV 169 (598)
Q Consensus 152 vv~~STv~~~~~~~~~~~ 169 (598)
|.+..|---.||-++...
T Consensus 111 I~VTGT~GKTTTt~li~~ 128 (448)
T PRK03803 111 IAITGSNGKSTVTTLVGE 128 (448)
T ss_pred EEEECCCcHHHHHHHHHH
Confidence 888888877766665443
No 292
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.98 E-value=0.26 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.0
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
..+|+|+|+|.||..++..|.+
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~ 23 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAE 23 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHH
Confidence 4699999999999999999876
No 293
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.96 E-value=0.093 Score=54.52 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=56.3
Q ss_pred CceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||-| .||.|+|..|.. .|..|+++...
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~---------------------------~gAtVtv~hs~------------------- 190 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLN---------------------------AGASVSVCHIL------------------- 190 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHH---------------------------CCCEEEEEeCC-------------------
Confidence 3689999999 999999999998 78899988431
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++.+.+++||+||.+++.|-- +. ...+++|.+|++-.+-
T Consensus 191 --------------t~~l~~~~~~ADIvV~AvG~p~~--------------i~------~~~vk~GavVIDvGi~ 231 (285)
T PRK14191 191 --------------TKDLSFYTQNADIVCVGVGKPDL--------------IK------ASMVKKGAVVVDIGIN 231 (285)
T ss_pred --------------cHHHHHHHHhCCEEEEecCCCCc--------------CC------HHHcCCCcEEEEeecc
Confidence 23345678999999999987741 11 2345899999886543
No 294
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=94.95 E-value=0.087 Score=54.76 Aligned_cols=106 Identities=17% Similarity=0.294 Sum_probs=74.3
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCCh-hhhhhhhhcccccccCCCceEecCChhhhccCCC
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEP-SQIIQDLKELDPELLDHNAVSILDDPYDTVKNTH 473 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ad 473 (598)
.||+++|| ......++..|++.|++|.+||.-... .+.... . +.....++.++++.+|
T Consensus 1 ~kIafIGL----------G~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~-------~----Ga~~a~s~~eaa~~aD 59 (286)
T COG2084 1 MKIAFIGL----------GIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA-------A----GATVAASPAEAAAEAD 59 (286)
T ss_pred CeEEEEcC----------chhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH-------c----CCcccCCHHHHHHhCC
Confidence 37999998 468899999999999999999986554 222221 1 3367789999999999
Q ss_pred EEEEEeeccch-hhc--cHHHHHhccCCCcEEEecCCCCCh------hhhhhcccee
Q psy11160 474 AIVVCTEWDEF-VTL--DYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNV 521 (598)
Q Consensus 474 alii~t~~~~f-~~l--d~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y 521 (598)
+||.+..-+.= ++. ..+.+.+.+++..+++|...+=.. +.+++.|..|
T Consensus 60 vVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~ 116 (286)
T COG2084 60 VVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEF 116 (286)
T ss_pred EEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcE
Confidence 99999876642 221 113455566667799999887432 4444566655
No 295
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.93 E-value=0.1 Score=55.01 Aligned_cols=89 Identities=9% Similarity=0.124 Sum_probs=62.1
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+++++|+|+|+ .|....+++.|...|.+|.+||+.....+.... . ++.. .++.++++
T Consensus 13 ~LkgKtVGIIG~----------GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~-------~----G~~v-~sl~Eaak 70 (335)
T PRK13403 13 LLQGKTVAVIGY----------GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA-------D----GFEV-MSVSEAVR 70 (335)
T ss_pred hhCcCEEEEEeE----------cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH-------c----CCEE-CCHHHHHh
Confidence 458999999998 488999999999999999999653322221111 1 2232 48999999
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcE
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAY 501 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~i 501 (598)
.+|+|+++.+.++-+++=...+...|++..+
T Consensus 71 ~ADVV~llLPd~~t~~V~~~eil~~MK~Gai 101 (335)
T PRK13403 71 TAQVVQMLLPDEQQAHVYKAEVEENLREGQM 101 (335)
T ss_pred cCCEEEEeCCChHHHHHHHHHHHhcCCCCCE
Confidence 9999999998765443312456666765443
No 296
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.92 E-value=0.12 Score=58.56 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=68.4
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+..+++.|...|.+|.+|||....+.... + ++... ++.++++.
T Consensus 138 l~gktvgIiG~----------G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~-~-----------g~~~~-~l~ell~~ 194 (526)
T PRK13581 138 LYGKTLGIIGL----------GRIGSEVAKRAKAFGMKVIAYDPYISPERAAQ-L-----------GVELV-SLDELLAR 194 (526)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHHhCCCEEEEECCCCChhHHHh-c-----------CCEEE-cHHHHHhh
Confidence 47899999998 36788999999999999999999765432211 1 22333 78899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDA 513 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~ 513 (598)
+|+|+++.+... -++ ++- ...+.|++..++++..+ +.|.+.
T Consensus 195 aDiV~l~lP~t~~t~~li~~-~~l~~mk~ga~lIN~aRG~~vde~a 239 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGA-EELAKMKPGVRIINCARGGIIDEAA 239 (526)
T ss_pred CCEEEEccCCChHhhcCcCH-HHHhcCCCCeEEEECCCCceeCHHH
Confidence 999999988753 333 343 34556776667776554 445433
No 297
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.88 E-value=0.11 Score=54.79 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=60.7
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|||+|+ .+-+-.+++.|..-|.+|.+|||...... . .+. ..++.++++.
T Consensus 143 L~gktvGIiG~----------G~IG~~vA~~~~~fgm~V~~~d~~~~~~~--------------~-~~~-~~~l~ell~~ 196 (311)
T PRK08410 143 IKGKKWGIIGL----------GTIGKRVAKIAQAFGAKVVYYSTSGKNKN--------------E-EYE-RVSLEELLKT 196 (311)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHhhcCCEEEEECCCccccc--------------c-Cce-eecHHHHhhc
Confidence 57999999998 36788999999999999999999643210 0 112 3478999999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEec
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDG 505 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~ 505 (598)
+|+|+++.+... -++ +|-+.+ +.|++..+++.+
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~-~~Mk~~a~lIN~ 231 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKEL-KLLKDGAILINV 231 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHH-HhCCCCeEEEEC
Confidence 999999987543 222 344443 356655555543
No 298
>PRK10206 putative oxidoreductase; Provisional
Probab=94.86 E-value=0.096 Score=56.00 Aligned_cols=71 Identities=11% Similarity=0.212 Sum_probs=44.3
Q ss_pred ceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 6 SHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 6 ~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.||+|||+|.++.. .+..+.. ...+.+|+ ++|+++++.+...+-
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~-------------------------~~~~~~l~av~d~~~~~~~~~~~~--------- 47 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLN-------------------------RKDSWHVAHIFRRHAKPEEQAPIY--------- 47 (344)
T ss_pred eEEEEECCCHHHhheehhhHhc-------------------------CCCCEEEEEEEcCChhHHHHHHhc---------
Confidence 58999999997642 2333322 00356765 589987654222210
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTPT 119 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp~ 119 (598)
....+.+|+++.++ +.|+|+||+|+..
T Consensus 48 ---------~~~~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 48 ---------SHIHFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred ---------CCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence 11345678888885 5799999987654
No 299
>PLN03075 nicotianamine synthase; Provisional
Probab=94.80 E-value=0.18 Score=52.77 Aligned_cols=106 Identities=10% Similarity=0.190 Sum_probs=69.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|+.||+|..|.+....++. ..++-.++++|+|++.++..++-... .+++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~-------------------------~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~ 176 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKH-------------------------HLPTTSFHNFDIDPSANDVARRLVSS--DPDLS 176 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHh-------------------------cCCCCEEEEEeCCHHHHHHHHHHhhh--ccCcc
Confidence 3689999999999887666655 11455899999999999876642100 12221
Q ss_pred HHHhhhcCCceEEe-cCHHH---HhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFS-TDIKS---AIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~~---~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
.+++|. .|..+ ...+.|+||+.+--.+++ ..=..+++.+.+.+++|.+++..|
T Consensus 177 --------~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk-----------~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 177 --------KRMFFHTADVMDVTESLKEYDVVFLAALVGMDK-----------EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred --------CCcEEEECchhhcccccCCcCEEEEeccccccc-----------ccHHHHHHHHHHhcCCCcEEEEec
Confidence 233333 23222 135789999985322211 123678899999999999999888
No 300
>PLN02928 oxidoreductase family protein
Probab=94.78 E-value=0.13 Score=55.28 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=69.8
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhh-hh-cccccccCCCceEecCChhhhc
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQD-LK-ELDPELLDHNAVSILDDPYDTV 469 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~al 469 (598)
+.+++|+|+|+ .+-+..+++.|...|.+|.+|||....+..... ++ +........ . ....++.+++
T Consensus 157 l~gktvGIiG~----------G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~L~ell 224 (347)
T PLN02928 157 LFGKTVFILGY----------GAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDE-K-GGHEDIYEFA 224 (347)
T ss_pred CCCCEEEEECC----------CHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccc-c-CcccCHHHHH
Confidence 57999999998 467889999999999999999996443211100 00 000000000 0 1235788999
Q ss_pred cCCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 470 KNTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 470 ~~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+.+|+|+++..... -++ ++- ...+.|++..++++.-+ ++|.+.+
T Consensus 225 ~~aDiVvl~lPlt~~T~~li~~-~~l~~Mk~ga~lINvaRG~lVde~AL 272 (347)
T PLN02928 225 GEADIVVLCCTLTKETAGIVND-EFLSSMKKGALLVNIARGGLLDYDAV 272 (347)
T ss_pred hhCCEEEECCCCChHhhcccCH-HHHhcCCCCeEEEECCCccccCHHHH
Confidence 99999999987532 233 343 44556877778888643 5665444
No 301
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.77 E-value=0.41 Score=53.40 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=30.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.++|.|||+|..|..+|..|++ .|++|+++|.++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~---------------------------~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLE---------------------------LGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCc
Confidence 3589999999999999999998 899999999654
No 302
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.69 E-value=0.14 Score=54.59 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=26.6
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHh-CCCCcceecc
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALK-CPNIQVTVVD 37 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~-~~~~~~~~~~ 37 (598)
..+||+|||+ ||+|.-+...|+.+ +|.+++..+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~la 38 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALA 38 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEE
Confidence 4579999998 99999999999874 5666554443
No 303
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=94.68 E-value=0.17 Score=48.24 Aligned_cols=76 Identities=16% Similarity=0.333 Sum_probs=51.8
Q ss_pred CceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++++|||-+ .+|.|++..|.+ .|..|+..+..
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~---------------------------~~atVt~~h~~------------------- 69 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLN---------------------------KGATVTICHSK------------------- 69 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHH---------------------------TT-EEEEE-TT-------------------
T ss_pred CCEEEEECCcCCCChHHHHHHHh---------------------------CCCeEEeccCC-------------------
Confidence 3689999998 599999999999 78889888752
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
|.++++.+++||+||.+++.|-. +. ...++++.+|++.++...
T Consensus 70 --------------T~~l~~~~~~ADIVVsa~G~~~~--------------i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 70 --------------TKNLQEITRRADIVVSAVGKPNL--------------IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp --------------SSSHHHHHTTSSEEEE-SSSTT---------------B-------GGGS-TTEEEEE--CEEE
T ss_pred --------------CCcccceeeeccEEeeeeccccc--------------cc------cccccCCcEEEecCCccc
Confidence 24556678999999999987631 11 235689999998777654
No 304
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.65 E-value=0.4 Score=53.25 Aligned_cols=111 Identities=12% Similarity=0.176 Sum_probs=66.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-----HHHHHHc-CCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-----RIRQWNS-NKLPIY 79 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-----~~~~~~~-~~~~~~ 79 (598)
+||.|+|+|..|.++|..|.. .|++|+++|.++. ..+.+.+ |.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~---------------------------~G~~V~~~D~~~~~~~~~~~~~l~~~gi---- 63 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVK---------------------------LGAKVTAFDKKSEEELGEVSNELKELGV---- 63 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHH---------------------------CCCEEEEECCCCCccchHHHHHHHhCCC----
Confidence 689999999999999999999 8999999998642 1122322 11
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHH-------HHHHHHHcCCCcEE
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAA-------ARMIAEIATDNKIV 152 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~iv 152 (598)
.+....+..+.+.++|+||++..-|.+ .+.+...++. ++.+.+. .+.++|
T Consensus 64 --------------~~~~~~~~~~~~~~~dlVV~Spgi~~~--------~p~~~~a~~~~i~i~s~~e~~~~~-~~~~vI 120 (458)
T PRK01710 64 --------------KLVLGENYLDKLDGFDVIFKTPSMRID--------SPELVKAKEEGAYITSEMEEFIKY-CPAKVF 120 (458)
T ss_pred --------------EEEeCCCChHHhccCCEEEECCCCCCC--------chHHHHHHHcCCcEEechHHhhhh-cCCCEE
Confidence 111122223456789999888433321 1222211110 0111222 234688
Q ss_pred EEecCCchHHHHHHHHHH
Q psy11160 153 VEKSTVPVRAAESIMNVL 170 (598)
Q Consensus 153 v~~STv~~~~~~~~~~~l 170 (598)
-+..|.--.||.++...+
T Consensus 121 aITGTnGKTTT~~ll~~i 138 (458)
T PRK01710 121 GVTGSDGKTTTTTLIYEM 138 (458)
T ss_pred EEECCCCHHHHHHHHHHH
Confidence 888888887777765533
No 305
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.62 E-value=0.23 Score=49.15 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=29.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.++|.|||.|.||...+..|.+ .|.+|++++.+
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~---------------------------~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLK---------------------------YGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEcCC
Confidence 3689999999999999999999 78999999765
No 306
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.62 E-value=0.043 Score=59.69 Aligned_cols=33 Identities=45% Similarity=0.589 Sum_probs=30.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.+|+|||.|.+|+++|..|++ .|++|+++|+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~---------------------------~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ---------------------------RGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeCCC
Confidence 599999999999999999999 899999999864
No 307
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.61 E-value=0.18 Score=42.60 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.5
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
.++++|+|.|.+|.+++..+..
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~ 44 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLAD 44 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 4689999999999999999998
No 308
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.57 E-value=0.16 Score=48.23 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=31.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
.+|.|||.|.+|...+..|.+ .|++|++++ ++..+.+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~---------------------------~ga~V~VIs--p~~~~~l~ 51 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKD---------------------------TGAFVTVVS--PEICKEMK 51 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEEc--CccCHHHH
Confidence 689999999999999999999 899999995 44444443
No 309
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.57 E-value=0.34 Score=47.79 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=32.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~ 72 (598)
.||.|||+|-+|+.+|..|+. .|. +++++|.+.-....++
T Consensus 22 ~~VlviG~GglGs~ia~~La~---------------------------~Gv~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAG---------------------------AGVGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHH---------------------------cCCCeEEEecCCEEcccchh
Confidence 689999999999999999999 675 8999998744444444
No 310
>PLN02214 cinnamoyl-CoA reductase
Probab=94.55 E-value=0.18 Score=53.71 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=49.4
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH-----HHHcCCCC
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR-----QWNSNKLP 77 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-----~~~~~~~~ 77 (598)
++++|.|.|. |++|..++..|.+ +|++|++++++.+... .+..+...
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~---------------------------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~ 61 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLE---------------------------RGYTVKGTVRNPDDPKNTHLRELEGGKER 61 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---------------------------CcCEEEEEeCCchhhhHHHHHHhhCCCCc
Confidence 4578999998 9999999999999 8999999999866432 11111000
Q ss_pred CCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 78 IYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 78 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
+. .....++-..+..++++.+|+||-+..
T Consensus 62 ~~----------~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 90 (342)
T PLN02214 62 LI----------LCKADLQDYEALKAAIDGCDGVFHTAS 90 (342)
T ss_pred EE----------EEecCcCChHHHHHHHhcCCEEEEecC
Confidence 00 000112222345567888999988864
No 311
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.55 E-value=0.061 Score=44.59 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=30.2
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
||.|||.|++|.-+|..|+. .|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~---------------------------~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE---------------------------LGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH---------------------------TTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------hCcEEEEEeccch
Confidence 68999999999999999999 8899999998643
No 312
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.53 E-value=0.084 Score=54.49 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=32.3
Q ss_pred eEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHH
Q psy11160 7 HICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ 70 (598)
Q Consensus 7 ~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~ 70 (598)
+|.|.| .|++|..++..|.. +||+|.++|++......
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~ 39 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLA---------------------------AGHDVRGLDRLRDGLDP 39 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHh---------------------------CCCeEEEEeCCCccccc
Confidence 589999 59999999999999 89999999997666543
No 313
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.52 E-value=0.23 Score=52.00 Aligned_cols=76 Identities=13% Similarity=0.247 Sum_probs=59.7
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++.+++|+|+|.+ +.-..+++..|.++|++|.+++-.. .++.++++
T Consensus 156 ~l~Gk~V~vIG~s---------~ivG~PmA~~L~~~gatVtv~~~~t-------------------------~~l~e~~~ 201 (301)
T PRK14194 156 DLTGKHAVVIGRS---------NIVGKPMAALLLQAHCSVTVVHSRS-------------------------TDAKALCR 201 (301)
T ss_pred CCCCCEEEEECCC---------CccHHHHHHHHHHCCCEEEEECCCC-------------------------CCHHHHHh
Confidence 4689999999952 3577899999999999999987531 35778889
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r 506 (598)
.||++|.++..+.+-.-+| +++..+++|..
T Consensus 202 ~ADIVIsavg~~~~v~~~~------ik~GaiVIDvg 231 (301)
T PRK14194 202 QADIVVAAVGRPRLIDADW------LKPGAVVIDVG 231 (301)
T ss_pred cCCEEEEecCChhcccHhh------ccCCcEEEEec
Confidence 9999999999998755443 33445899976
No 314
>PLN02427 UDP-apiose/xylose synthase
Probab=94.49 E-value=0.096 Score=56.54 Aligned_cols=80 Identities=19% Similarity=0.352 Sum_probs=49.9
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC-CceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP-NIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.|||.|.|. |++|..++..|.+ . |++|+++|++.++...+.....+...++
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~---------------------------~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~ 66 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMT---------------------------ETPHKVLALDVYNDKIKHLLEPDTVPWSGR 66 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHh---------------------------cCCCEEEEEecCchhhhhhhccccccCCCC
Confidence 478999995 9999999999998 5 6999999998877665442110000011
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
++ . ....++-..+..++++++|+||-+..
T Consensus 67 ~~-~----~~~Dl~d~~~l~~~~~~~d~ViHlAa 95 (386)
T PLN02427 67 IQ-F----HRINIKHDSRLEGLIKMADLTINLAA 95 (386)
T ss_pred eE-E----EEcCCCChHHHHHHhhcCCEEEEccc
Confidence 00 0 00111111234556778999887763
No 315
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.47 E-value=0.091 Score=50.66 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=32.1
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
||+|||+|-+|+.+|..|+. .|. +++++|.+.-....+++
T Consensus 1 ~VlViG~GglGs~ia~~La~---------------------------~Gvg~i~lvD~D~v~~sNl~R 41 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR---------------------------SGVGNLKLVDFDVVEPSNLNR 41 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------cCCCeEEEEeCCEEcCcchhc
Confidence 68999999999999999999 676 69999988633344443
No 316
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=94.41 E-value=0.13 Score=54.35 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.3
Q ss_pred CceEEEECC-ChhHHHHHHHHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~ 26 (598)
++||+|+|+ ||.|.-+...|+.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~ 24 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAG 24 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhc
Confidence 579999997 9999999999998
No 317
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.40 E-value=0.28 Score=52.53 Aligned_cols=99 Identities=22% Similarity=0.258 Sum_probs=62.0
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHc-CCCC-CCCCCh
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNS-NKLP-IYEPGL 83 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~-~~~~-~~e~~~ 83 (598)
++.|+|+|.+|+-.+..+.. .| .+|+++|++++|++..++ +... +..+.-
T Consensus 171 ~V~V~GaGpIGLla~~~a~~---------------------------~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~ 223 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKL---------------------------LGASVVIVVDRSPERLELAKEAGGADVVVNPSE 223 (350)
T ss_pred EEEEECCCHHHHHHHHHHHH---------------------------cCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc
Confidence 79999999999998666655 45 689999999999999876 3221 111100
Q ss_pred HHHHhhhcCCceEEecCHHHHh--ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCchH
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAI--QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVR 161 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~--~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~ 161 (598)
+.... ...+.. ..+|++|.|++.+ .++++..+.++++-.|+.-++....
T Consensus 224 ~~~~~-----------~~~~~t~g~g~D~vie~~G~~------------------~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 224 DDAGA-----------EILELTGGRGADVVIEAVGSP------------------PALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ccHHH-----------HHHHHhCCCCCCEEEECCCCH------------------HHHHHHHHHhcCCCEEEEEeccCCc
Confidence 00000 000111 3599999998743 2455566667777666665655443
No 318
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.37 E-value=0.51 Score=52.42 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=65.7
Q ss_pred CceEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-HHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-RIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~~~~~~~~~~~~e~~ 82 (598)
.++|.|||+|-.|.+ +|..|.+ .|++|+++|.+.. ..+.+.+.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~---------------------------~G~~V~~~D~~~~~~~~~l~~~-------- 51 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLN---------------------------LGYKVSGSDLKESAVTQRLLEL-------- 51 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHh---------------------------CCCeEEEECCCCChHHHHHHHC--------
Confidence 468999999999999 7999998 8999999997643 22223221
Q ss_pred hHHHHhhhcCCceEEe-cCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcCCCcEEEE
Q psy11160 83 LDEVVKKTRDVNLFFS-TDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIATDNKIVVE 154 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~ivv~ 154 (598)
++.+. ....+.+.++|+||++-.-|.+ .+.+...++ -.+.+....+..++|.+
T Consensus 52 -----------gi~~~~~~~~~~~~~~d~vv~spgi~~~--------~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~I 112 (461)
T PRK00421 52 -----------GAIIFIGHDAENIKDADVVVYSSAIPDD--------NPELVAARELGIPVVRRAEMLAELMRFRTSIAV 112 (461)
T ss_pred -----------CCEEeCCCCHHHCCCCCEEEECCCCCCC--------CHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEE
Confidence 11221 1122356789998888544432 122221111 11122333344578888
Q ss_pred ecCCchHHHHHHHH
Q psy11160 155 KSTVPVRAAESIMN 168 (598)
Q Consensus 155 ~STv~~~~~~~~~~ 168 (598)
..|---.||-.+..
T Consensus 113 TGTnGKTTTt~ll~ 126 (461)
T PRK00421 113 AGTHGKTTTTSLLA 126 (461)
T ss_pred ECCCCHHHHHHHHH
Confidence 88877766655544
No 319
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.32 E-value=0.69 Score=50.96 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=32.7
Q ss_pred CCCC-CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 1 MVQT-ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 1 m~~~-~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
||.. ..+|.|+|+|..|.+.+..|++ .|++|+++|...
T Consensus 1 ~~~~~~~~i~v~G~G~sG~s~~~~l~~---------------------------~G~~v~~~D~~~ 39 (438)
T PRK03806 1 MADYQGKKVVIIGLGLTGLSCVDFFLA---------------------------RGVTPRVIDTRI 39 (438)
T ss_pred CcccCCCEEEEEeeCHHHHHHHHHHHH---------------------------CCCeEEEEcCCC
Confidence 6664 3579999999999999998888 899999999753
No 320
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.30 E-value=0.18 Score=53.02 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=66.3
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-...+++.|...|.+|.+|||....+ +.. ....++.++++.
T Consensus 120 L~gktvgIiG~----------G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------~~~---~~~~~l~ell~~ 173 (303)
T PRK06436 120 LYNKSLGILGY----------GGIGRRVALLAKAFGMNIYAYTRSYVND-------------GIS---SIYMEPEDIMKK 173 (303)
T ss_pred CCCCEEEEECc----------CHHHHHHHHHHHHCCCEEEEECCCCccc-------------Ccc---cccCCHHHHHhh
Confidence 57999999998 3678889999998999999999964321 101 123578899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDA 513 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~ 513 (598)
+|+|+++.+... -++ ++- ...+.|++..++++..+ +.|.+.
T Consensus 174 aDiv~~~lp~t~~T~~li~~-~~l~~mk~ga~lIN~sRG~~vd~~a 218 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINS-KMLSLFRKGLAIINVARADVVDKND 218 (303)
T ss_pred CCEEEECCCCCchhhcCcCH-HHHhcCCCCeEEEECCCccccCHHH
Confidence 999999887643 222 343 34456777667777654 445433
No 321
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.29 E-value=0.19 Score=55.08 Aligned_cols=94 Identities=11% Similarity=0.142 Sum_probs=66.5
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|||+|+ .+-+..+++.|...|.+|.+|||..... .+ .+....++.++++.
T Consensus 149 L~gktvGIiG~----------G~IG~~vA~~~~~fGm~V~~~d~~~~~~------------~~---~~~~~~~l~ell~~ 203 (409)
T PRK11790 149 VRGKTLGIVGY----------GHIGTQLSVLAESLGMRVYFYDIEDKLP------------LG---NARQVGSLEELLAQ 203 (409)
T ss_pred CCCCEEEEECC----------CHHHHHHHHHHHHCCCEEEEECCCcccc------------cC---CceecCCHHHHHhh
Confidence 57999999998 3678899999999999999999953210 00 12445689999999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCCh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNH 511 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~ 511 (598)
+|+|+++.+... -++ ++-+. .+.|++..+++.+.+ +.|.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~-l~~mk~ga~lIN~aRG~~vde 246 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEE-LALMKPGAILINASRGTVVDI 246 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHH-HhcCCCCeEEEECCCCcccCH
Confidence 999999987643 333 34444 446776667776643 4454
No 322
>PRK01581 speE spermidine synthase; Validated
Probab=94.24 E-value=0.84 Score=49.11 Aligned_cols=116 Identities=21% Similarity=0.220 Sum_probs=68.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|.+||+| .|..+...+.. ...-+|+++|+|++.++..++- + .+.
T Consensus 151 PkrVLIIGgG-dG~tlrelLk~--------------------------~~v~~It~VEIDpeVIelAr~~--~----~L~ 197 (374)
T PRK01581 151 PKRVLILGGG-DGLALREVLKY--------------------------ETVLHVDLVDLDGSMINMARNV--P----ELV 197 (374)
T ss_pred CCEEEEECCC-HHHHHHHHHhc--------------------------CCCCeEEEEeCCHHHHHHHHhc--c----ccc
Confidence 3689999998 44444444443 0236899999999999877641 0 000
Q ss_pred HHHhhh-cCCceEE-ecCHHHHh----ccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKT-RDVNLFF-STDIKSAI----QKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~-~~~~~~~-~~~~~~~~----~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
++-... .+.+++. ..|..+-+ ..-|+||+..+.|... ...--+-.+.++.+.+.++++-+++.-+..
T Consensus 198 ~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~-------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 198 SLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATE-------LLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred hhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCcccc-------chhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 000000 0123332 23433333 2359999998766431 112224467788899999999988877665
Q ss_pred ch
Q psy11160 159 PV 160 (598)
Q Consensus 159 ~~ 160 (598)
+.
T Consensus 271 p~ 272 (374)
T PRK01581 271 PA 272 (374)
T ss_pred hh
Confidence 53
No 323
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.23 E-value=0.058 Score=58.61 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=31.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|+|+|||.|.+|+++|..|++ .|++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~---------------------------~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQ---------------------------AGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHH---------------------------CCCEEEEEeCCCc
Confidence 589999999999999999999 8999999999753
No 324
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.22 E-value=0.14 Score=53.54 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=34.6
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHH
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERI 68 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~ 68 (598)
|....++|.|.|. |++|..++..|+. .|++|++.+++.+..
T Consensus 1 ~~~~~k~vlVtG~~G~IG~~l~~~L~~---------------------------~G~~V~~~~r~~~~~ 42 (325)
T PLN02989 1 MADGGKVVCVTGASGYIASWIVKLLLF---------------------------RGYTINATVRDPKDR 42 (325)
T ss_pred CCCCCCEEEEECCchHHHHHHHHHHHH---------------------------CCCEEEEEEcCCcch
Confidence 5556688999985 9999999999999 899999988876543
No 325
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.21 E-value=0.18 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHH
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~ 26 (598)
|+ +++||+|+|+ ||+|..+...|.+
T Consensus 1 m~-~~~~IaIvGATG~vG~eLlrlL~~ 26 (336)
T PRK05671 1 MS-QPLDIAVVGATGTVGEALVQILEE 26 (336)
T ss_pred CC-CCCEEEEEccCCHHHHHHHHHHhh
Confidence 44 4579999997 9999999999996
No 326
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.21 E-value=0.43 Score=48.21 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=35.5
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQW 71 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~ 71 (598)
+++|.|+|+ |.+|..++..|.. .|++|+++.+++++...+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~---------------------------~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLA---------------------------KGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHh---------------------------CCCEEEEEecCHHHHHHh
Confidence 578999995 9999999999999 899999999998876554
No 327
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.20 E-value=0.16 Score=52.91 Aligned_cols=75 Identities=19% Similarity=0.370 Sum_probs=55.5
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||.|. +|.|+|..|.. .|..|+++++..
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~---------------------------~gatVtv~~~~t------------------ 193 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLN---------------------------ANATVTICHSRT------------------ 193 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh---------------------------CCCEEEEEeCCc------------------
Confidence 36899999997 99999999998 677999998621
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCc
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVP 159 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~ 159 (598)
.++.+.+++||+||.+++.|. .+. .+.++++.+|++-.+-+
T Consensus 194 ---------------~~L~~~~~~aDIvI~AtG~~~--------------~v~------~~~lk~gavViDvg~n~ 234 (283)
T PRK14192 194 ---------------QNLPELVKQADIIVGAVGKPE--------------LIK------KDWIKQGAVVVDAGFHP 234 (283)
T ss_pred ---------------hhHHHHhccCCEEEEccCCCC--------------cCC------HHHcCCCCEEEEEEEee
Confidence 123445689999999986542 011 13468999998876655
No 328
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.19 E-value=0.2 Score=52.12 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=57.3
Q ss_pred CceEEEECCCh-hHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGY-VGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~-vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
.++++|||-+. ||.|+|..|.. .|..|++++..
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~---------------------------~~atVtv~hs~------------------- 197 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLN---------------------------RNATVSVCHVF------------------- 197 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHH---------------------------CCCEEEEEecc-------------------
Confidence 36899999998 99999999998 78899988731
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++.+.+++||+||.+++-|.. +. ...++++.+|++-.+-
T Consensus 198 --------------T~~l~~~~~~ADIvv~AvG~p~~--------------i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 198 --------------TDDLKKYTLDADILVVATGVKHL--------------IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred --------------CCCHHHHHhhCCEEEEccCCccc--------------cC------HHHcCCCcEEEEeccc
Confidence 33566778999999999987731 11 1257899999986653
No 329
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.15 E-value=0.15 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred CceEEEECC-ChhHHHHHHHHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~ 26 (598)
++||+|+|+ ||+|..+...|+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~ 23 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEE 23 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh
Confidence 368999997 9999999999988
No 330
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.15 E-value=0.056 Score=58.31 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=33.0
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|+ +.++|+|||.|..|+.+|..|++ .|++|+++|++++
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~---------------------------~g~~v~v~Er~~~ 38 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALAR---------------------------QGIKVKLLEQAAE 38 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHh---------------------------CCCcEEEEeeCcc
Confidence 44 45799999999999999999999 7899999998753
No 331
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.12 E-value=0.14 Score=53.34 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=48.3
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC-CCCCCCCC
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN-KLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~-~~~~~e~~ 82 (598)
.++|.|.| +|++|..++..|.+ .|++|++++++.+........ ...-..+.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~ 56 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQ---------------------------RGYTVKATVRDPNDPKKTEHLLALDGAKER 56 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHH---------------------------CCCEEEEEEcCCCchhhHHHHHhccCCCCc
Confidence 46899999 59999999999999 899999999876543221100 00000000
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
+. .....+.-......+++++|+||-+..
T Consensus 57 ~~-----~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 85 (322)
T PLN02662 57 LH-----LFKANLLEEGSFDSVVDGCEGVFHTAS 85 (322)
T ss_pred eE-----EEeccccCcchHHHHHcCCCEEEEeCC
Confidence 00 000112222345567888999988864
No 332
>KOG1494|consensus
Probab=94.12 E-value=0.17 Score=51.85 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=72.7
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
...||+|+|+ |-+|.|+...|.. +|-+ -+..+||+.... -...-.++|..+.
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~-np~V------------------------s~LaLYDi~~~~--GVaaDlSHI~T~s 79 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKL-NPLV------------------------SELALYDIANTP--GVAADLSHINTNS 79 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhc-Cccc------------------------ceeeeeecccCC--cccccccccCCCC
Confidence 3469999997 8999999988876 2222 367778875211 0000111111100
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEe
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG-RAADLKYVEAAARMIAEIATDNKIVVEK 155 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~ 155 (598)
- + .+..-...+++++++||+|+|+.+-|.++...+.+ -..+-..++.....|++..+.-.+.+++
T Consensus 80 ~-------V-~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 80 S-------V-VGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred c-------e-eccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence 0 0 11122245778999999999999999888664333 2345567777778888888777776664
No 333
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.11 E-value=0.071 Score=55.47 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=47.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
|+|.|.|. |++|..++..|++ .|++|++++++++....+.......
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~------ 47 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLE---------------------------QGEEVRVLVRPTSDRRNLEGLDVEI------ 47 (328)
T ss_pred CeEEEECCccchhHHHHHHHHH---------------------------CCCEEEEEEecCccccccccCCceE------
Confidence 47999985 9999999999999 8999999999876543322110000
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
....+.-..++.++++.+|+||-+..
T Consensus 48 ------~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 48 ------VEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred ------EEeeCCCHHHHHHHHhCCCEEEEece
Confidence 00111111234556778999888764
No 334
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.09 E-value=0.21 Score=53.26 Aligned_cols=91 Identities=14% Similarity=0.257 Sum_probs=64.9
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHH-HHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTL-LYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L-~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
+.+++|+|+|+ .+-+..+++.| ...|.+|..|||..... ... .+....++.++++
T Consensus 144 l~g~~VgIIG~----------G~IG~~vA~~L~~~~g~~V~~~d~~~~~~-~~~-------------~~~~~~~l~ell~ 199 (332)
T PRK08605 144 IKDLKVAVIGT----------GRIGLAVAKIFAKGYGSDVVAYDPFPNAK-AAT-------------YVDYKDTIEEAVE 199 (332)
T ss_pred eCCCEEEEECC----------CHHHHHHHHHHHhcCCCEEEEECCCccHh-HHh-------------hccccCCHHHHHH
Confidence 47899999998 36677899998 55799999999975432 111 1234568899999
Q ss_pred CCCEEEEEeeccchhh--ccHHHHHhccCCCcEEEecCC
Q psy11160 471 NTHAIVVCTEWDEFVT--LDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 471 ~adalii~t~~~~f~~--ld~~~l~~~m~~~~iI~D~r~ 507 (598)
++|+|++++....... ++ ..+.+.|++..++++...
T Consensus 200 ~aDvIvl~lP~t~~t~~li~-~~~l~~mk~gailIN~sR 237 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFN-ADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred hCCEEEEeCCCCcchhhhcC-HHHHhcCCCCcEEEECCC
Confidence 9999999987655332 22 234566777778888664
No 335
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.08 E-value=0.78 Score=50.65 Aligned_cols=114 Identities=14% Similarity=0.166 Sum_probs=67.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH--HHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER--IRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~~~~~~~~~~e~~ 82 (598)
.++|.|+|.|..|.+.|..|++ .|++|+++|.++.. .+++.+-
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~---------------------------~g~~v~~~d~~~~~~~~~~l~~~-------- 49 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRK---------------------------NGAEVAAYDAELKPERVAQIGKM-------- 49 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCEEEEEeCCCCchhHHHHhhc--------
Confidence 4689999999999999999999 89999999976542 2222210
Q ss_pred hHHHHhhhcCCceEE--ecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcC--CCcE
Q psy11160 83 LDEVVKKTRDVNLFF--STDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIAT--DNKI 151 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~--~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~--~~~i 151 (598)
..++.+ .........++|+||.+..-|.+ .+.+...++ -.+-+...++ +..+
T Consensus 50 ---------~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~--------~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~ 112 (445)
T PRK04308 50 ---------FDGLVFYTGRLKDALDNGFDILALSPGISER--------QPDIEAFKQNGGRVLGDIELLADIVNRRGDKV 112 (445)
T ss_pred ---------cCCcEEEeCCCCHHHHhCCCEEEECCCCCCC--------CHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCE
Confidence 001222 11122234689999998655532 233332221 0122234333 3468
Q ss_pred EEEecCCchHHHHHHHHHH
Q psy11160 152 VVEKSTVPVRAAESIMNVL 170 (598)
Q Consensus 152 vv~~STv~~~~~~~~~~~l 170 (598)
|.+..|.--.||..+...+
T Consensus 113 I~ITGT~GKTTTt~li~~i 131 (445)
T PRK04308 113 IAITGSNGKTTVTSLVGYL 131 (445)
T ss_pred EEEECCCcHHHHHHHHHHH
Confidence 8888887776666655433
No 336
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.06 E-value=0.51 Score=52.26 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=29.5
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
||.|||+|..|.+.|..|++ .|++|+++|+++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~---------------------------~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA---------------------------QGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEECCCC
Confidence 79999999999999999998 899999999864
No 337
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.05 E-value=0.19 Score=55.38 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=47.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+++|+|.||..++..|.++-+ .+..++ +...+| .++|++.++.+.+. .
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~-----~l~~~~------------g~~i~l~~V~~~~~~~~~~~~-----~----- 55 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAE-----EIAARA------------GRPIEIKKVAVRDLEKDRGVD-----L----- 55 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHH-----HHHHhc------------CCCEEEEEEEeCChhhccCCC-----C-----
Confidence 4799999999999999988866100 000110 013454 45688876643110 0
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNT 117 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~t 117 (598)
....+++|+++.+. +.|+|+.++++
T Consensus 56 ---------~~~~~~~d~~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 56 ---------PGILLTTDPEELVNDPDIDIVVELMGG 82 (426)
T ss_pred ---------cccceeCCHHHHhhCCCCCEEEECCCC
Confidence 12345678888775 46999999754
No 338
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.03 E-value=0.3 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.0
Q ss_pred CceEEEEC-CChhHHHHHHHHHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~ 26 (598)
++||+|+| .|++|..+...|..
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~ 25 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLAN 25 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHc
Confidence 47999998 79999999999887
No 339
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=94.03 E-value=0.15 Score=43.98 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=46.2
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
+..+++|+|+|..|..++..+.+. .|+. +.++|.+++++-+--
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~--------------------------~g~~i~~~~dv~~~~~G~~i---------- 45 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSM--------------------------RGFGIVAVFDVDPEKIGKEI---------- 45 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHH--------------------------HCECEEEEEEECTTTTTSEE----------
T ss_pred CCCeEEEECCCCcHHHHHHhHHHH--------------------------cCCCCEEEEEcCCCccCcEE----------
Confidence 346899999999999998655541 4554 567899887653211
Q ss_pred hHHHHhhhcCCceEEecCHHHHhcc--CcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQK--AQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~--adviii~v~tp 118 (598)
.++....+.+++.+. .|+.+++||.+
T Consensus 46 ----------~gipV~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 46 ----------GGIPVYGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp ----------TTEEEESSHHHHHHHCTTSEEEEES-HH
T ss_pred ----------CCEEeeccHHHhhhhhCCCEEEEEcCHH
Confidence 134444455555555 99999999653
No 340
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.00 E-value=0.059 Score=58.05 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=32.8
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|+.+..+|.|||+|.+|+.+|..|++ .|++|+++|+++
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~---------------------------~G~~v~liE~~~ 40 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALAR---------------------------AGASVALVAPEP 40 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhc---------------------------CCCeEEEEeCCC
Confidence 55455689999999999999999999 789999999864
No 341
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.99 E-value=0.82 Score=50.39 Aligned_cols=115 Identities=9% Similarity=0.099 Sum_probs=65.9
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH----HHHHHcCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER----IRQWNSNKLPIY 79 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~----~~~~~~~~~~~~ 79 (598)
..++|.|+|+|.+|.++|..|++ .|++|+++|.+... .+.+....
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~---------------------------~G~~V~~~d~~~~~~~~~~~~l~~~g---- 52 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHK---------------------------LGANVTVNDGKPFSENPEAQELLEEG---- 52 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHH---------------------------CCCEEEEEcCCCccchhHHHHHHhcC----
Confidence 34689999999999999999999 89999999986422 22232210
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhcc-CcEEEEecCCCCCCCCCCCCCCcchHHHHHH----H--HHHHHHcCCCcEE
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQK-AQLIFISVNTPTKTFGNGKGRAADLKYVEAA----A--RMIAEIATDNKIV 152 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~-adviii~v~tp~~~~~~~~~~~~~~~~~~~~----~--~~i~~~~~~~~iv 152 (598)
.......+..+.+.. +|+||.+..-|.+ .+.+...++. + -+++..+.+..+|
T Consensus 53 -------------~~~~~~~~~~~~~~~~~d~vV~s~gi~~~--------~~~~~~a~~~~i~v~~~~el~~~~~~~~~I 111 (447)
T PRK02472 53 -------------IKVICGSHPLELLDEDFDLMVKNPGIPYT--------NPMVEKALEKGIPIITEVELAYLISEAPII 111 (447)
T ss_pred -------------CEEEeCCCCHHHhcCcCCEEEECCCCCCC--------CHHHHHHHHCCCcEEeHHHHHHHhcCCCEE
Confidence 111111233333444 8988887543322 1222221110 0 1122233455688
Q ss_pred EEecCCchHHHHHHHHHH
Q psy11160 153 VEKSTVPVRAAESIMNVL 170 (598)
Q Consensus 153 v~~STv~~~~~~~~~~~l 170 (598)
.+..|.--.||.++...+
T Consensus 112 ~VTGT~GKTTTt~ll~~i 129 (447)
T PRK02472 112 GITGSNGKTTTTTLIGEM 129 (447)
T ss_pred EEeCCCchHHHHHHHHHH
Confidence 888888776766655543
No 342
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.98 E-value=0.17 Score=50.43 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=32.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
.+|+|||+|-+|+.+|..|+. .|. +++++|.+.-....+++
T Consensus 29 ~~V~ViG~GglGs~ia~~La~---------------------------~Gvg~i~lvD~D~ve~sNL~R 70 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALAR---------------------------SGVGNLKLVDFDVVEPSNLNR 70 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHH---------------------------cCCCeEEEEeCCEeccccccc
Confidence 689999999999999999999 665 69999987433334443
No 343
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.97 E-value=0.078 Score=52.71 Aligned_cols=71 Identities=13% Similarity=0.312 Sum_probs=45.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||+|.+|..++..+.. ...|+++++ +|.++++......+ .+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~-------------------------~~~g~~ivgv~D~d~~~~~~~i~g-~~------ 131 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGF-------------------------EKRGFKIVAAFDVDPEKIGTKIGG-IP------ 131 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhc-------------------------ccCCcEEEEEEECChhhcCCEeCC-eE------
Confidence 4589999999999998876432 115777775 78887765322111 11
Q ss_pred HHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNTP 118 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~tp 118 (598)
.....++.+.++ ++|.+++|+|..
T Consensus 132 -----------v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 132 -----------VYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred -----------EcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 111234455554 499999998653
No 344
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.97 E-value=0.21 Score=51.79 Aligned_cols=73 Identities=23% Similarity=0.549 Sum_probs=55.6
Q ss_pred ceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++|||-+ .||.|+|..|.. .|..|++...
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~---------------------------~~AtVti~hs--------------------- 189 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLN---------------------------ANATVDICHI--------------------- 189 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Confidence 689999998 999999999998 6778886642
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.|.++.+.+++||+||.+++.|.- +. ...+++|.+|++-++-
T Consensus 190 ------------~T~~l~~~~~~ADIvV~AvGkp~~--------------i~------~~~vk~gavvIDvGin 231 (281)
T PRK14183 190 ------------FTKDLKAHTKKADIVIVGVGKPNL--------------IT------EDMVKEGAIVIDIGIN 231 (281)
T ss_pred ------------CCcCHHHHHhhCCEEEEecCcccc--------------cC------HHHcCCCcEEEEeecc
Confidence 123456678999999999987741 11 2456799999986554
No 345
>PRK06487 glycerate dehydrogenase; Provisional
Probab=93.96 E-value=0.2 Score=53.04 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=63.3
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+-.+++.|..-|.+|.+|||...... .-..++.++++.
T Consensus 146 l~gktvgIiG~----------G~IG~~vA~~l~~fgm~V~~~~~~~~~~~------------------~~~~~l~ell~~ 197 (317)
T PRK06487 146 LEGKTLGLLGH----------GELGGAVARLAEAFGMRVLIGQLPGRPAR------------------PDRLPLDELLPQ 197 (317)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHhhCCCEEEEECCCCCccc------------------ccccCHHHHHHh
Confidence 47999999998 46788999999999999999998632110 012478899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCCh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNH 511 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~ 511 (598)
+|+|+++.+... -++ ++-+.+ +.|++..+++.+-+ +.|.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~-~~mk~ga~lIN~aRG~vVde 240 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGAREL-ALMKPGALLINTARGGLVDE 240 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHH-hcCCCCeEEEECCCccccCH
Confidence 999999887543 233 354444 35665556665443 4454
No 346
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.92 E-value=0.54 Score=46.80 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=50.1
Q ss_pred EEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH--HHHHHHHcCCCCCCCCChH
Q psy11160 8 ICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE--ERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 8 I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~--~~~~~~~~~~~~~~e~~~~ 84 (598)
|+|+|+ |.+|.+++..|.+ .+++|.+.-|++ +..+.+......+.+-.
T Consensus 1 I~V~GatG~~G~~v~~~L~~---------------------------~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d-- 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---------------------------AGFSVRALVRDPSSDRAQQLQALGAEVVEAD-- 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---------------------------TTGCEEEEESSSHHHHHHHHHHTTTEEEES---
T ss_pred CEEECCccHHHHHHHHHHHh---------------------------CCCCcEEEEeccchhhhhhhhcccceEeecc--
Confidence 789997 9999999999999 899999999985 34556653211111111
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
+.-..++.++++++|.||++++..
T Consensus 52 ----------~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 52 ----------YDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp ----------TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred ----------cCCHHHHHHHHcCCceEEeecCcc
Confidence 111234566899999999998644
No 347
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.90 E-value=0.52 Score=52.69 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=33.3
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIR 69 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~ 69 (598)
.++|.|+|+|-.|.++|..|.+ .|++|+++|++.....
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~---------------------------~G~~V~~~D~~~~~~~ 52 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSE---------------------------LGCDVVVADDNETARH 52 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHH---------------------------CCCEEEEECCChHHHH
Confidence 3689999999999999999999 8999999998766544
No 348
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.90 E-value=0.18 Score=52.52 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=51.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.++.|||+|-+|.+++..|++ .|. +|++++|+.++.+.+.+.....
T Consensus 126 k~vlvlGaGGaarai~~aL~~---------------------------~G~~~i~I~nRt~~ka~~La~~~~~~------ 172 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALAS---------------------------LGVTDITVINRNPDKLSRLVDLGVQV------ 172 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHH---------------------------cCCCeEEEEeCCHHHHHHHHHHhhhc------
Confidence 579999999999999999998 675 7999999999998876421000
Q ss_pred HHHhhhcCCceE-Ee--cCHHHHhccCcEEEEecCCC
Q psy11160 85 EVVKKTRDVNLF-FS--TDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 85 ~~~~~~~~~~~~-~~--~~~~~~~~~adviii~v~tp 118 (598)
..+. .. .+..+.+.++|+||-|+|..
T Consensus 173 --------~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 173 --------GVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred --------CcceeccchhhhhhcccCCCEEEECCCCC
Confidence 0011 11 12234567899999997653
No 349
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.90 E-value=0.68 Score=51.35 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=32.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQW 71 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~ 71 (598)
++|.|||+|-.|.+.|..|.+ .|++|+++|........+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~---------------------------~G~~v~~~D~~~~~~~~l 48 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVA---------------------------GGAEVIAWDDNPASRAKA 48 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHH---------------------------CCCEEEEECCChhhHHHH
Confidence 589999999999999999888 899999999875544333
No 350
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.88 E-value=0.21 Score=56.65 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=35.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
+.|.|.|+ |++|..++..|++ .|++|++++++.++.+.+.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk---------------------------~G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLK---------------------------LGFRVRAGVRSAQRAESLV 121 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHH---------------------------CCCeEEEEeCCHHHHHHHH
Confidence 56888886 9999999999999 8999999999999887654
No 351
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.85 E-value=0.3 Score=51.13 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=64.9
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC---C
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN---T 472 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---a 472 (598)
+|+|+|+ ......+++.|.+.|.+|.+||+.....+ .+.. . +.....++.++++. +
T Consensus 2 ~Ig~IGl----------G~mG~~mA~~L~~~g~~v~v~dr~~~~~~---~~~~----~----g~~~~~s~~~~~~~~~~a 60 (299)
T PRK12490 2 KLGLIGL----------GKMGGNMAERLREDGHEVVGYDVNQEAVD---VAGK----L----GITARHSLEELVSKLEAP 60 (299)
T ss_pred EEEEEcc----------cHHHHHHHHHHHhCCCEEEEEECCHHHHH---HHHH----C----CCeecCCHHHHHHhCCCC
Confidence 6899987 35678899999999999999998532211 1110 1 23566788888766 6
Q ss_pred CEEEEEeecc-chhhccHHHHHhccCCCcEEEecCCCCC
Q psy11160 473 HAIVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 473 dalii~t~~~-~f~~ld~~~l~~~m~~~~iI~D~r~i~d 510 (598)
|+|++++..+ ..+++ +..+...+.+..+|+|..++-.
T Consensus 61 dvVi~~vp~~~~~~~v-~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 61 RTIWVMVPAGEVTESV-IKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred CEEEEEecCchHHHHH-HHHHhccCCCCCEEEECCCCCc
Confidence 8999999988 44442 2455555655669999987754
No 352
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.84 E-value=0.35 Score=50.33 Aligned_cols=76 Identities=17% Similarity=0.299 Sum_probs=58.5
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++.+++|+|+|.+ +--..+++..|.++|++|.+++.. +.++.+.++
T Consensus 155 ~l~Gk~v~vIG~S---------~ivG~Pla~lL~~~gatVtv~~s~-------------------------t~~l~~~~~ 200 (284)
T PRK14179 155 ELEGKHAVVIGRS---------NIVGKPMAQLLLDKNATVTLTHSR-------------------------TRNLAEVAR 200 (284)
T ss_pred CCCCCEEEEECCC---------CcCcHHHHHHHHHCCCEEEEECCC-------------------------CCCHHHHHh
Confidence 4589999999953 456678999999999999998432 235778889
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r 506 (598)
.||++|.++..++|-.-+| +++-.+++|..
T Consensus 201 ~ADIVI~avg~~~~v~~~~------ik~GavVIDvg 230 (284)
T PRK14179 201 KADILVVAIGRGHFVTKEF------VKEGAVVIDVG 230 (284)
T ss_pred hCCEEEEecCccccCCHHH------ccCCcEEEEec
Confidence 9999999999999855443 33445888864
No 353
>PRK07045 putative monooxygenase; Reviewed
Probab=93.83 E-value=0.069 Score=57.62 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=34.6
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|.+...+|+|||+|..|+.+|..|++ +|++|+++++.++
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 39 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGA---------------------------RGHSVTVVERAAR 39 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHh---------------------------cCCcEEEEeCCCc
Confidence 56566799999999999999999999 8999999998764
No 354
>PLN02650 dihydroflavonol-4-reductase
Probab=93.83 E-value=0.31 Score=51.76 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=51.4
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-CCC
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-LPI 78 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-~~~ 78 (598)
|-...++|.|.|+ |++|..++..|++ .|++|++++++.+..+.+..-. .+-
T Consensus 1 ~~~~~k~iLVTGatGfIGs~l~~~L~~---------------------------~G~~V~~~~r~~~~~~~~~~~~~~~~ 53 (351)
T PLN02650 1 MGSQKETVCVTGASGFIGSWLVMRLLE---------------------------RGYTVRATVRDPANVKKVKHLLDLPG 53 (351)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHH---------------------------CCCEEEEEEcCcchhHHHHHHHhccC
Confidence 3345678999986 9999999999999 8999999999876655432100 000
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
.++.+. .....++-.....++++++|.||-+..
T Consensus 54 ~~~~~~-----~v~~Dl~d~~~~~~~~~~~d~ViH~A~ 86 (351)
T PLN02650 54 ATTRLT-----LWKADLAVEGSFDDAIRGCTGVFHVAT 86 (351)
T ss_pred CCCceE-----EEEecCCChhhHHHHHhCCCEEEEeCC
Confidence 000000 000112212234567788999888763
No 355
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.82 E-value=0.078 Score=56.75 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=32.2
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
++.++|+|||.|.+|+++|..|++ .|++|+++|..+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~---------------------------~G~~V~vie~~~ 37 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAE---------------------------RGADVTVLEAGE 37 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHH---------------------------cCCEEEEEecCc
Confidence 456799999999999999999999 889999999764
No 356
>PRK06847 hypothetical protein; Provisional
Probab=93.81 E-value=0.067 Score=57.19 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|.++++|+|||.|..|+.+|..|++ .|++|++++++++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~---------------------------~g~~v~v~E~~~~ 38 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRR---------------------------AGIAVDLVEIDPE 38 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEecCCC
Confidence 3456799999999999999999999 7888888887653
No 357
>PRK07236 hypothetical protein; Provisional
Probab=93.76 E-value=0.078 Score=57.26 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=29.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.++|.|||+|..|+.+|..|++ .|++|+++++++
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~---------------------------~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRR---------------------------AGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEecCC
Confidence 3689999999999999999999 778888888764
No 358
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.72 E-value=0.35 Score=50.66 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=69.3
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC---C
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN---T 472 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---a 472 (598)
+|+|+|+ ...+..+++.|.+.|.+|.+||+.....+. +.. .+.....++.++++. +
T Consensus 2 ~Ig~IGl----------G~MG~~mA~~L~~~g~~v~v~dr~~~~~~~---~~~--------~g~~~~~~~~e~~~~~~~~ 60 (301)
T PRK09599 2 QLGMIGL----------GRMGGNMARRLLRGGHEVVGYDRNPEAVEA---LAE--------EGATGADSLEELVAKLPAP 60 (301)
T ss_pred EEEEEcc----------cHHHHHHHHHHHHCCCeEEEEECCHHHHHH---HHH--------CCCeecCCHHHHHhhcCCC
Confidence 6899997 367788999999999999999986432111 110 123556778777765 6
Q ss_pred CEEEEEeeccc-hhhccHHHHHhccCCCcEEEecCCCCCh------hhhhhcccee
Q psy11160 473 HAIVVCTEWDE-FVTLDYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNV 521 (598)
Q Consensus 473 dalii~t~~~~-f~~ld~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y 521 (598)
|+++++..+.. .++. +..+...+.+..+++|..+.... +.+++.|+.|
T Consensus 61 dvvi~~v~~~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~ 115 (301)
T PRK09599 61 RVVWLMVPAGEITDAT-IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHF 115 (301)
T ss_pred CEEEEEecCCcHHHHH-HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEE
Confidence 89999998873 3332 34555555555699999876532 3344566655
No 359
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.68 E-value=0.25 Score=52.20 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=67.5
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+..+++.|...|.+|.+|||...... . . . ...-..++.+++++
T Consensus 134 l~g~tvgIvG~----------G~IG~~vA~~l~afG~~V~~~~~~~~~~~--~-~---------~-~~~~~~~l~e~l~~ 190 (312)
T PRK15469 134 REDFTIGILGA----------GVLGSKVAQSLQTWGFPLRCWSRSRKSWP--G-V---------Q-SFAGREELSAFLSQ 190 (312)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHHHCCCEEEEEeCCCCCCC--C-c---------e-eecccccHHHHHhc
Confidence 46899999998 46788999999999999999998543210 0 0 0 01113578899999
Q ss_pred CCEEEEEeeccch-hh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 472 THAIVVCTEWDEF-VT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 472 adalii~t~~~~f-~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
+|+|+++.....- ++ ++ ....+.|++..++++.-+ +.|.+.+
T Consensus 191 aDvvv~~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~vVde~aL 236 (312)
T PRK15469 191 TRVLINLLPNTPETVGIIN-QQLLEQLPDGAYLLNLARGVHVVEDDL 236 (312)
T ss_pred CCEEEECCCCCHHHHHHhH-HHHHhcCCCCcEEEECCCccccCHHHH
Confidence 9999998876542 22 34 344556777667777554 5666444
No 360
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.68 E-value=0.76 Score=54.91 Aligned_cols=113 Identities=12% Similarity=0.180 Sum_probs=66.6
Q ss_pred CCCceEEEECCChhHHHH-HHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-HHHHHHcCCCCCCC
Q psy11160 3 QTISHICCIGAGYVGGPT-CSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-RIRQWNSNKLPIYE 80 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~~~~~~~~~~~~e 80 (598)
.++++|.|||+|-.|.+. |..|++ .|++|+++|.++. ..+.+.+.
T Consensus 2 ~~~~~i~viG~G~sG~salA~~L~~---------------------------~G~~V~~sD~~~~~~~~~L~~~------ 48 (809)
T PRK14573 2 MKSLFYHFIGIGGIGMSALAHILLD---------------------------RGYSVSGSDLSEGKTVEKLKAK------ 48 (809)
T ss_pred CCcceEEEEEecHHhHHHHHHHHHH---------------------------CCCeEEEECCCCChHHHHHHHC------
Confidence 345689999999999998 989998 8999999997542 23333321
Q ss_pred CChHHHHhhhcCCceEEe-cCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHH-------HHHHHHHcCCCcEE
Q psy11160 81 PGLDEVVKKTRDVNLFFS-TDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAA-------ARMIAEIATDNKIV 152 (598)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~iv 152 (598)
++.+. ....+.+.++|+||++-.-|.+ .+.+...++. .+-+....+...+|
T Consensus 49 -------------gi~~~~g~~~~~~~~~d~vV~SpgI~~~--------~p~~~~a~~~gi~v~~~~el~~~~~~~~~~I 107 (809)
T PRK14573 49 -------------GARFFLGHQEEHVPEDAVVVYSSSISKD--------NVEYLSAKSRGNRLVHRAELLAELMQEQISI 107 (809)
T ss_pred -------------CCEEeCCCCHHHcCCCCEEEECCCcCCC--------CHHHHHHHHCCCcEEeHHHHHHHHHcCCCEE
Confidence 11111 1122356789998887444432 1222221110 11223333433688
Q ss_pred EEecCCchHHHHHHHHH
Q psy11160 153 VEKSTVPVRAAESIMNV 169 (598)
Q Consensus 153 v~~STv~~~~~~~~~~~ 169 (598)
.+..|.--.||.++...
T Consensus 108 aITGTnGKTTTt~li~~ 124 (809)
T PRK14573 108 LVSGSHGKTTVSSLITA 124 (809)
T ss_pred EEECCCCHHHHHHHHHH
Confidence 88888877776665543
No 361
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.67 E-value=0.69 Score=51.95 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=30.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..+|.|+|+|..|.++|..|.+ .|++|+++|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~---------------------------~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCAR---------------------------HGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHH---------------------------CCCEEEEEcCCC
Confidence 3589999999999999999998 899999999754
No 362
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.62 E-value=0.58 Score=49.82 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=33.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
-.+|+|+|+|-+|.- |..+|+. .|.+|+++|+++++.+..++
T Consensus 167 G~~V~I~G~GGlGh~-avQ~Aka--------------------------~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 167 GKWVAVVGAGGLGHM-AVQYAKA--------------------------MGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CCEEEEECCcHHHHH-HHHHHHH--------------------------cCCeEEEEeCChHHHHHHHH
Confidence 468999999966654 5555551 68999999999999987764
No 363
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=93.61 E-value=0.42 Score=50.78 Aligned_cols=99 Identities=17% Similarity=0.261 Sum_probs=68.8
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
.+.++++||+|+ ..-...+++.|..-|.+|.+|||.-.++ .... + ...+.+ +.++++
T Consensus 143 ~l~gktvGIiG~----------GrIG~avA~r~~~Fgm~v~y~~~~~~~~-~~~~--------~---~~~y~~-l~ell~ 199 (324)
T COG1052 143 DLRGKTLGIIGL----------GRIGQAVARRLKGFGMKVLYYDRSPNPE-AEKE--------L---GARYVD-LDELLA 199 (324)
T ss_pred CCCCCEEEEECC----------CHHHHHHHHHHhcCCCEEEEECCCCChH-HHhh--------c---Cceecc-HHHHHH
Confidence 357999999998 4678899999998899999999976522 2221 1 135555 999999
Q ss_pred CCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhh
Q psy11160 471 NTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDA 513 (598)
Q Consensus 471 ~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~ 513 (598)
.+|+|++..+--. -++ ++-+.+. .|++..+++.+-+ +.|.+.
T Consensus 200 ~sDii~l~~Plt~~T~hLin~~~l~-~mk~ga~lVNtaRG~~VDe~A 245 (324)
T COG1052 200 ESDIISLHCPLTPETRHLINAEELA-KMKPGAILVNTARGGLVDEQA 245 (324)
T ss_pred hCCEEEEeCCCChHHhhhcCHHHHH-hCCCCeEEEECCCccccCHHH
Confidence 9999999876432 222 4655554 5776667766544 556543
No 364
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.59 E-value=0.56 Score=46.47 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=30.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..+|.|||.|.+|..-+..|.+ .|.+|++++.+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~---------------------------~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK---------------------------AGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH---------------------------CCCEEEEEcCCC
Confidence 3689999999999999999999 789999998753
No 365
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=93.59 E-value=0.21 Score=51.37 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=31.6
Q ss_pred eEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHH
Q psy11160 7 HICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERI 68 (598)
Q Consensus 7 ~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~ 68 (598)
+|.|+|+ |++|..++..|.+ .|++|.+..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~---------------------------~g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQA---------------------------ASVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHh---------------------------CCCcEEEEeCCCccc
Confidence 4789988 9999999999999 899999999998754
No 366
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.52 E-value=0.83 Score=50.18 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=64.2
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HH----HHH--cCCCCCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IR----QWN--SNKLPIY 79 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~----~~~--~~~~~~~ 79 (598)
||.|||+|-.|.++|..|.+ .|++|+++|..... .+ .+. .|.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~---------------------------~G~~V~~sD~~~~~~~~~~~~~~~~~~gi---- 49 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHK---------------------------KGAEVTVTDLKPNEELEPSMGQLRLNEGS---- 49 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHH---------------------------CCCEEEEEeCCCCccchhHHHHHhhccCc----
Confidence 58899999999999999999 89999999975432 11 111 111
Q ss_pred CCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcCCCcEE
Q psy11160 80 EPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIATDNKIV 152 (598)
Q Consensus 80 e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~iv 152 (598)
.+..-.+ .+.+.++|+||++-.-|.+ .+.+...++ -.+-+.... +.++|
T Consensus 50 --------------~~~~g~~-~~~~~~~d~vv~sp~i~~~--------~p~~~~a~~~~i~i~~~~e~~~~~~-~~~~I 105 (433)
T TIGR01087 50 --------------VLHTGLH-LEDLNNADLVVKSPGIPPD--------HPLVQAAAKRGIPVVGDIELFLRLV-PLPVV 105 (433)
T ss_pred --------------EEEecCc-hHHhccCCEEEECCCCCCC--------CHHHHHHHHCCCcEEEHHHHHHhhc-CCCEE
Confidence 1111123 3457789998887544432 222222221 012233434 55788
Q ss_pred EEecCCchHHHHHHHH
Q psy11160 153 VEKSTVPVRAAESIMN 168 (598)
Q Consensus 153 v~~STv~~~~~~~~~~ 168 (598)
.+..|---.||-.+..
T Consensus 106 ~VTGT~GKTTTt~li~ 121 (433)
T TIGR01087 106 AITGTNGKTTTTSLLY 121 (433)
T ss_pred EEECCCCHHHHHHHHH
Confidence 8888877766665544
No 367
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.50 E-value=0.27 Score=43.08 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=55.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|.|||.|.+|..=+..|.+ .|-+|+++..+.+.. + +...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~---------------------------~gA~v~vis~~~~~~---~-~~i~------- 48 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLE---------------------------AGAKVTVISPEIEFS---E-GLIQ------- 48 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCC---------------------------CTBEEEEEESSEHHH---H-TSCE-------
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------------CCCEEEEECCchhhh---h-hHHH-------
Confidence 4689999999999999999999 789999999875111 1 2110
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCCch
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPV 160 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~ 160 (598)
+ ....+++.+.++++||++++.+ .+. +.|....+...+.++.+..|.
T Consensus 49 ----------~-~~~~~~~~l~~~~lV~~at~d~---------------~~n---~~i~~~a~~~~i~vn~~D~p~ 95 (103)
T PF13241_consen 49 ----------L-IRREFEEDLDGADLVFAATDDP---------------ELN---EAIYADARARGILVNVVDDPE 95 (103)
T ss_dssp ----------E-EESS-GGGCTTESEEEE-SS-H---------------HHH---HHHHHHHHHTTSEEEETT-CC
T ss_pred ----------H-HhhhHHHHHhhheEEEecCCCH---------------HHH---HHHHHHHhhCCEEEEECCCcC
Confidence 1 1222345688999999985432 222 344445554556666555543
No 368
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.42 E-value=5.3 Score=42.15 Aligned_cols=265 Identities=13% Similarity=0.174 Sum_probs=139.0
Q ss_pred CCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeC---CHHHHH-HHHcCCC
Q psy11160 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDK---SEERIR-QWNSNKL 76 (598)
Q Consensus 2 ~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~---~~~~~~-~~~~~~~ 76 (598)
|..+.++-++|+|.+..-+|.-+.. .| ..+-.+.+ +.+++. .++.+..
T Consensus 1 m~~m~~vLllGtGpvaIQlAv~l~~---------------------------h~d~~lg~~~r~s~rse~l~qala~~~q 53 (431)
T COG4408 1 MHNMLPVLLLGTGPVAIQLAVDLSA---------------------------HGDARLGLYNRPSTRSERLKQALALTPQ 53 (431)
T ss_pred CCcccceeEeecCcHHHHHHHHHHh---------------------------ccCceeeccCCCCchhHHHHHHHhcCCe
Confidence 3456789999999999999998887 22 34444443 233333 3333322
Q ss_pred CCCCCChHHHHhhhcCCceE---EecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHH-HHcC-CCcE
Q psy11160 77 PIYEPGLDEVVKKTRDVNLF---FSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIA-EIAT-DNKI 151 (598)
Q Consensus 77 ~~~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~-~~~i 151 (598)
++-.+-.+.. +...++.+ +-.+++.+..+=+.+|+|||++. -.+++++|- +.++ -.++
T Consensus 54 -l~l~~q~eah-r~leg~~~id~~~kd~a~~~~dwqtlilav~aDa---------------Y~dvlqqi~~e~L~~vk~v 116 (431)
T COG4408 54 -LYLQGQGEAH-RQLEGSVTIDCYIKDLAQAVGDWQTLILAVPADA---------------YYDVLQQIPWEALPQVKSV 116 (431)
T ss_pred -EEEEeccHHH-HhhcCceehhHHHhhHHHhhchhheEEEEeecHH---------------HHHHHhcCCHhHhccccEE
Confidence 3333333321 11122222 23567777778899999997752 345555542 2232 2456
Q ss_pred EEEecCCchH-HHHHHHHHHhhccCCcccccCCCCCchHH------HHHHHHHHHHhcCCceEEEecccc-chhhhhHHH
Q psy11160 152 VVEKSTVPVR-AAESIMNVLKANHKTNVQFQGRAADLKYV------EAAARMIAEIATDNKIVVEKSTVP-VRAAESIMN 223 (598)
Q Consensus 152 vv~~STv~~~-~~~~~~~~l~~~~~~~~~~~~~~~dl~~l------~~A~~~Ia~~l~~~~lvv~eSTvP-~gtt~~~~~ 223 (598)
|.+++|..-+ ..+..+..+...+ +--.+...-.|.+++ .+-++.|-+ -+-+-|+=+ -+..+.++.
T Consensus 117 iLiSptfGsn~lv~~~mnk~~~da-eViS~SsY~~dTk~id~~~p~~alTkavKk------riYlgs~~~ns~~~e~l~~ 189 (431)
T COG4408 117 ILISPTFGSNLLVQNLMNKAGRDA-EVISLSSYYADTKYIDAEQPNRALTKAVKK------RIYLGSQHGNSGSAEMLTA 189 (431)
T ss_pred EEecccccccHHHHHHHhhhCCCc-eEEEeehhcccceeecccCcchHHHHHHhH------heeeccCCCCChHHHHHHH
Confidence 7777777554 4444444221000 000000111111111 111222211 123334332 233444555
Q ss_pred HHhhcccCCceeeEEECCcccCcCchhhhcCCCCEEEEccCCCchhHHHHHHHHHHHhcccCCceEEe---cCchhHHHH
Q psy11160 224 VLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILT---TNTWSSELS 300 (598)
Q Consensus 224 ~L~~~~~~g~~~~l~~~Pe~~~~G~a~~~~~~p~rv~vGg~~~~~~~~a~~~l~~ly~~~~~~~~v~~---~~~~~Ae~~ 300 (598)
+++. .|.+..++.+|.- .++..+....+|+.+| + +. + +..+|.......-++- .++-+.
T Consensus 190 v~aq---~~I~v~~~esp~~-AEtrnit~YVHpPlfl-n-df------s---L~aif~~~~~p~yvYKlyPEGPIt~--- 251 (431)
T COG4408 190 VLAQ---HGIDVEPCESPLA-AETRNITLYVHPPLFL-N-DF------S---LQAIFYPEQRPQYVYKLYPEGPITP--- 251 (431)
T ss_pred HHHh---cCCceEEcCChhh-hhhcccceeecCcchh-h-hh------H---HHHHhCCcCCCceeEecCCCCCCCH---
Confidence 5544 4677788889864 5677777788888664 3 21 2 3556766653222221 223222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHcCCc
Q psy11160 301 KLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDS 340 (598)
Q Consensus 301 Kl~~N~~~~~~ia~~nE~~~la~~~gid~~ev~~~l~~~~ 340 (598)
-+..+ .-...-|+..+-.++|++.-.+++.++-+.
T Consensus 252 ~lIr~-----mr~lwke~m~ll~r~~ve~iNLLrFl~ddN 286 (431)
T COG4408 252 ALIRD-----MRGLWKEYMRLLNRLGVEEINLLRFLNDDN 286 (431)
T ss_pred HHHHH-----HHHHHHHHHHHHHHcCCCchhHHHHhccCC
Confidence 12222 223567889999999999999999998663
No 369
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.38 E-value=0.25 Score=52.89 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=25.0
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCc
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQ 32 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~ 32 (598)
|....+||+|||+ ||+|..+...|+. .|+|.
T Consensus 1 ~~~~~~~VaIvGATG~vG~ell~lL~~-h~~f~ 32 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEK-ETKFN 32 (347)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHH-CCCCC
Confidence 4555679999998 9999999999995 35553
No 370
>PRK06932 glycerate dehydrogenase; Provisional
Probab=93.34 E-value=0.29 Score=51.72 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=63.5
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccC
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 471 (598)
+.+++|+|+|+ .+-+-.+++.|..-|.+|.+||+..... .. . . ..++.++++.
T Consensus 145 l~gktvgIiG~----------G~IG~~va~~l~~fg~~V~~~~~~~~~~-~~------------~---~-~~~l~ell~~ 197 (314)
T PRK06932 145 VRGSTLGVFGK----------GCLGTEVGRLAQALGMKVLYAEHKGASV-CR------------E---G-YTPFEEVLKQ 197 (314)
T ss_pred cCCCEEEEECC----------CHHHHHHHHHHhcCCCEEEEECCCcccc-cc------------c---c-cCCHHHHHHh
Confidence 47999999998 3678889999999999999999853211 00 0 1 2478899999
Q ss_pred CCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChh
Q psy11160 472 THAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHD 512 (598)
Q Consensus 472 adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~ 512 (598)
+|+|+++.+... -++ ++-+.+. .|++..+++.+-+ +.|.+
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~-~mk~ga~lIN~aRG~~Vde~ 241 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLA-LMKPTAFLINTGRGPLVDEQ 241 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHH-hCCCCeEEEECCCccccCHH
Confidence 999999887543 222 4544444 5666556665433 44543
No 371
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.30 E-value=0.8 Score=42.64 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=48.4
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++++++|.|+|= .+.-...++..|.++|++|...+-.. .++.++++
T Consensus 25 ~~~gk~v~VvGr---------s~~vG~pla~lL~~~gatV~~~~~~t-------------------------~~l~~~v~ 70 (140)
T cd05212 25 RLDGKKVLVVGR---------SGIVGAPLQCLLQRDGATVYSCDWKT-------------------------IQLQSKVH 70 (140)
T ss_pred CCCCCEEEEECC---------CchHHHHHHHHHHHCCCEEEEeCCCC-------------------------cCHHHHHh
Confidence 358999999994 34667889999999999999876421 34667889
Q ss_pred CCCEEEEEeeccch
Q psy11160 471 NTHAIVVCTEWDEF 484 (598)
Q Consensus 471 ~adalii~t~~~~f 484 (598)
.||++|.+|..+.+
T Consensus 71 ~ADIVvsAtg~~~~ 84 (140)
T cd05212 71 DADVVVVGSPKPEK 84 (140)
T ss_pred hCCEEEEecCCCCc
Confidence 99999999999865
No 372
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.30 E-value=0.12 Score=50.08 Aligned_cols=70 Identities=13% Similarity=0.406 Sum_probs=46.0
Q ss_pred CCceEEEECCChhHHHHHHH-HHHhCCCCcceeccccccCCCcccccccCCCCceE-EEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSV-IALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQV-TVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v-~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
++.++.+||+|.+|.+++.. +.+ ..|.++ -++|.+++++-.--.+ .|+++
T Consensus 83 ~~tnviiVG~GnlG~All~Y~f~~--------------------------~~~~~iv~~FDv~~~~VG~~~~~-v~V~~- 134 (211)
T COG2344 83 KTTNVIIVGVGNLGRALLNYNFSK--------------------------KNGMKIVAAFDVDPDKVGTKIGD-VPVYD- 134 (211)
T ss_pred cceeEEEEccChHHHHHhcCcchh--------------------------hcCceEEEEecCCHHHhCcccCC-eeeec-
Confidence 35689999999999998753 332 156665 5689999987543332 44432
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhc--cCcEEEEecCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQ--KAQLIFISVNT 117 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~adviii~v~t 117 (598)
+ ++++.-++ +.|+.|+|||.
T Consensus 135 -~---------------d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 135 -L---------------DDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred -h---------------HHHHHHHHhcCccEEEEEccH
Confidence 1 22333343 78899999865
No 373
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=93.26 E-value=0.28 Score=52.55 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCCceEEEECC-ChhHHHHHHHHHH
Q psy11160 3 QTISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 3 ~~~~~I~viG~-G~vG~~~a~~la~ 26 (598)
.+.+||+|+|+ ||+|..+...|+.
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~ 29 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTD 29 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHh
Confidence 34689999997 9999999999987
No 374
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.23 E-value=1.1 Score=49.48 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=65.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH--HHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER--IRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~~~~~~~~~~e~~ 82 (598)
+++|.|||+|-.|.+.+..|.+ ++.|++|+++|.++.. .+.+.+|.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~-------------------------~~~~~~v~~~D~~~~~~~~~~l~~g~------- 54 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRK-------------------------YQPQLTVKVIDTRETPPGQEQLPEDV------- 54 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHh-------------------------cCCCCeEEEEeCCCCchhHHHhhcCC-------
Confidence 4689999999999999999988 1114899999976422 12222210
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcCCCcEEEEe
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIATDNKIVVEK 155 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~ivv~~ 155 (598)
.+.......+.+.++|+||++-.-|.+ .+.+...++ -.+-+.... +.++|-+.
T Consensus 55 -----------~~~~g~~~~~~~~~~d~vV~SpgI~~~--------~p~~~~a~~~gi~i~~~~el~~~~~-~~~~I~VT 114 (438)
T PRK04663 55 -----------ELHSGGWNLEWLLEADLVVTNPGIALA--------TPEIQQVLAAGIPVVGDIELFAWAV-DKPVIAIT 114 (438)
T ss_pred -----------EEEeCCCChHHhccCCEEEECCCCCCC--------CHHHHHHHHCCCcEEEHHHHHHhhc-CCCEEEEe
Confidence 111121122356789988887544432 122222111 011222333 45788888
Q ss_pred cCCchHHHHHHHHH
Q psy11160 156 STVPVRAAESIMNV 169 (598)
Q Consensus 156 STv~~~~~~~~~~~ 169 (598)
.|.--.||.++...
T Consensus 115 GTnGKTTTt~ll~~ 128 (438)
T PRK04663 115 GSNGKSTVTDLTGV 128 (438)
T ss_pred CCCCHHHHHHHHHH
Confidence 88887777765543
No 375
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.22 E-value=0.9 Score=50.28 Aligned_cols=108 Identities=14% Similarity=0.207 Sum_probs=64.1
Q ss_pred eEEEECCChhHHH-HHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH-HHHHHcCCCCCCCCChH
Q psy11160 7 HICCIGAGYVGGP-TCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER-IRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 7 ~I~viG~G~vG~~-~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~~~~e~~~~ 84 (598)
+|-|||.|-.|.+ +|..|++ .|++|+++|.+... .+.+.+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~---------------------------~G~~v~~~D~~~~~~~~~l~~~---------- 43 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN---------------------------RGYQVSGSDIAENATTKRLEAL---------- 43 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH---------------------------CCCeEEEECCCcchHHHHHHHC----------
Confidence 5789999999998 9999999 89999999976532 2223321
Q ss_pred HHHhhhcCCceEEec-CHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH-------HHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFFST-DIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA-------AARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~-~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~ivv~~S 156 (598)
++.+.. ...+.+.++|+||++-.-|.+ .+.+...++ -.+-+.+..++..+|.+..
T Consensus 44 ---------gi~~~~g~~~~~~~~~d~vV~spgi~~~--------~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITG 106 (448)
T TIGR01082 44 ---------GIPIYIGHSAENLDDADVVVVSAAIKDD--------NPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAG 106 (448)
T ss_pred ---------cCEEeCCCCHHHCCCCCEEEECCCCCCC--------CHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEEC
Confidence 122221 112356789998887444431 122222111 1122334444457888888
Q ss_pred CCchHHHHHHHH
Q psy11160 157 TVPVRAAESIMN 168 (598)
Q Consensus 157 Tv~~~~~~~~~~ 168 (598)
|---.||-.+..
T Consensus 107 TnGKTTTt~ll~ 118 (448)
T TIGR01082 107 THGKTTTTAMIA 118 (448)
T ss_pred CCChHHHHHHHH
Confidence 877766655443
No 376
>PRK06753 hypothetical protein; Provisional
Probab=93.20 E-value=0.094 Score=56.09 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=31.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|+|+|||.|..|+.+|..|++ .|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~---------------------------~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQE---------------------------QGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEecCCc
Confidence 589999999999999999999 7899999998764
No 377
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=93.19 E-value=0.34 Score=50.39 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=63.2
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
.+|+|+|+. ..+..+++.|.+.|.+|.+||+.....+.... . +.....++.++++++|+
T Consensus 3 ~~IgviG~G----------~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~--------~---g~~~~~~~~e~~~~~d~ 61 (296)
T PRK11559 3 MKVGFIGLG----------IMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA--------A---GAETASTAKAVAEQCDV 61 (296)
T ss_pred ceEEEEccC----------HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH--------C---CCeecCCHHHHHhcCCE
Confidence 479999973 45678999999999999999986432211110 1 23456788889999999
Q ss_pred EEEEeeccch-hhcc--HHHHHhccCCCcEEEecCCCCC
Q psy11160 475 IVVCTEWDEF-VTLD--YKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 475 lii~t~~~~f-~~ld--~~~l~~~m~~~~iI~D~r~i~d 510 (598)
+|+++..+.. +..- .+.+...+.+..+|+|...+..
T Consensus 62 vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~ 100 (296)
T PRK11559 62 IITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAP 100 (296)
T ss_pred EEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCH
Confidence 9999875432 2110 0223444555668999888753
No 378
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.15 E-value=0.33 Score=47.62 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=59.9
Q ss_pred CceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||-+ .||.|+|..|.. .|..|+.+|++.-... ..+.. +
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~---------------------------~~AtVti~~~~~~~~~--~~~~~-~----- 106 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLAN---------------------------DGARVYSVDINGIQVF--TRGES-I----- 106 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHH---------------------------CCCEEEEEecCccccc--ccccc-c-----
Confidence 3689999984 689999999999 7899999987643321 11100 0
Q ss_pred HHHHhhhcCCceEEe--cC----HHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 84 DEVVKKTRDVNLFFS--TD----IKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~--~~----~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
+-..| .+ +.+.+++||+||.+++.|--. +. .+.+++|.+||+-++
T Consensus 107 ----------~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~-------------i~------~d~ik~GavVIDVGi 157 (197)
T cd01079 107 ----------RHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYK-------------VP------TELLKDGAICINFAS 157 (197)
T ss_pred ----------ccccccccchhhHHHHHhhhCCEEEEccCCCCCc-------------cC------HHHcCCCcEEEEcCC
Confidence 00111 12 567889999999999887310 11 235679999998654
Q ss_pred C
Q psy11160 158 V 158 (598)
Q Consensus 158 v 158 (598)
-
T Consensus 158 ~ 158 (197)
T cd01079 158 I 158 (197)
T ss_pred C
Confidence 3
No 379
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.11 E-value=0.11 Score=56.24 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCceEEEECCChhHHHHHHHHHH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~ 26 (598)
...+|.|||.|.+|+++|..|++
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~ 27 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALAD 27 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc
Confidence 34689999999999999999999
No 380
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.03 E-value=0.099 Score=54.60 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=28.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.+|+|||+|..|+.+|..|++ .|++|+++|+++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~---------------------------~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR---------------------------AGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH---------------------------TTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHh---------------------------cccccccchhccc
Confidence 479999999999999999999 8899999998643
No 381
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=93.00 E-value=0.41 Score=50.01 Aligned_cols=95 Identities=16% Similarity=0.287 Sum_probs=64.7
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCE
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ada 474 (598)
++|+|+|+. .....++..|.+.|.+|.+||+.....+ .+.. . +...+.++.++++++|+
T Consensus 2 ~~Ig~IGlG----------~mG~~mA~~l~~~G~~V~v~d~~~~~~~---~~~~----~----g~~~~~s~~~~~~~aDv 60 (296)
T PRK15461 2 AAIAFIGLG----------QMGSPMASNLLKQGHQLQVFDVNPQAVD---ALVD----K----GATPAASPAQAAAGAEF 60 (296)
T ss_pred CeEEEEeeC----------HHHHHHHHHHHHCCCeEEEEcCCHHHHH---HHHH----c----CCcccCCHHHHHhcCCE
Confidence 379999973 5678899999999999999998643221 1110 1 22456788899999999
Q ss_pred EEEEeeccc-hhhc--cHHHHHhccCCCcEEEecCCCCC
Q psy11160 475 IVVCTEWDE-FVTL--DYKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 475 lii~t~~~~-f~~l--d~~~l~~~m~~~~iI~D~r~i~d 510 (598)
+|+++..+. .++. ....+...+.+..+++|...+..
T Consensus 61 Vi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p 99 (296)
T PRK15461 61 VITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHP 99 (296)
T ss_pred EEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCH
Confidence 999998764 3322 11233334445568899888764
No 382
>PLN02306 hydroxypyruvate reductase
Probab=92.97 E-value=0.47 Score=51.64 Aligned_cols=111 Identities=12% Similarity=0.135 Sum_probs=69.2
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHH-HcCCeEEEeCCCCChhhhhhhhhcccc---cccCC-CceEecCChh
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLL-YEGAKLKIYDPKVEPSQIIQDLKELDP---ELLDH-NAVSILDDPY 466 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~-~~G~~V~~~DP~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~ 466 (598)
+.+++|||+|+ .+-+..+++.|. .-|.+|.+|||...... ......++. ..+.. ..+....++.
T Consensus 163 L~gktvGIiG~----------G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~L~ 231 (386)
T PLN02306 163 LKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQSTRL-EKFVTAYGQFLKANGEQPVTWKRASSME 231 (386)
T ss_pred CCCCEEEEECC----------CHHHHHHHHHHHhcCCCEEEEECCCCchhh-hhhhhhhcccccccccccccccccCCHH
Confidence 57999999998 367788999985 78999999999864321 100000000 00000 0112346889
Q ss_pred hhccCCCEEEEEeeccc-hhh-ccHHHHHhccCCCcEEEecCC--CCChhhh
Q psy11160 467 DTVKNTHAIVVCTEWDE-FVT-LDYKRIYEGMMKPAYIFDGRK--ILNHDAL 514 (598)
Q Consensus 467 ~al~~adalii~t~~~~-f~~-ld~~~l~~~m~~~~iI~D~r~--i~d~~~~ 514 (598)
++++.+|+|+++..... -++ +|-+.+ +.|++..+++.+.+ +.|.+.+
T Consensus 232 ell~~sDiV~lh~Plt~~T~~lin~~~l-~~MK~ga~lIN~aRG~lVDe~AL 282 (386)
T PLN02306 232 EVLREADVISLHPVLDKTTYHLINKERL-ALMKKEAVLVNASRGPVIDEVAL 282 (386)
T ss_pred HHHhhCCEEEEeCCCChhhhhhcCHHHH-HhCCCCeEEEECCCccccCHHHH
Confidence 99999999999877543 222 455554 46777667777654 5665444
No 383
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=92.91 E-value=0.029 Score=48.78 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=33.8
Q ss_pred CHHHHHHHHcCCccccccccccCccccccchhhhHHHHHHHHHHcCChhHHHHHHHHHHHHh
Q psy11160 328 DVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLF 389 (598)
Q Consensus 328 d~~ev~~~l~~~~ri~~~~l~~~~gfgg~cl~KD~~~L~~~a~~~G~~~~~~~~~~~i~~~~ 389 (598)
..+|++|.+.|..+ ...++| +|+|..+|+++|++ +.++++.+.
T Consensus 2 ~~AEl~K~~~N~~~------a~~iaf--------~Nel~~lce~~giD-----~~~V~~~~~ 44 (96)
T PF00984_consen 2 EEAELIKYAENAFR------ATKIAF--------ANELARLCEKLGID-----VYEVIEAAN 44 (96)
T ss_dssp HHHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHHTSB-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHH------HHHHHH--------HHHHHHHHHHcCCC-----HHHHHHHHc
Confidence 45799999988665 556788 99999999999998 356666553
No 384
>PRK05868 hypothetical protein; Validated
Probab=92.89 E-value=0.1 Score=56.26 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=30.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|++|.|||.|..|+.+|..|++ .|++|+++|+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~---------------------------~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGR---------------------------HGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHh---------------------------CCCCEEEEcCCCC
Confidence 3689999999999999999999 7888888887654
No 385
>PRK14982 acyl-ACP reductase; Provisional
Probab=92.87 E-value=0.26 Score=52.57 Aligned_cols=70 Identities=17% Similarity=0.418 Sum_probs=51.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHcCCCCCCCCC
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNSNKLPIYEPG 82 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~~~~~~~e~~ 82 (598)
.++|.|+|+ |.||..+|..|+.+ .| .+++++++++++...+.....
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~--------------------------~gv~~lilv~R~~~rl~~La~el~------ 202 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAK--------------------------TGVAELLLVARQQERLQELQAELG------ 202 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhh--------------------------CCCCEEEEEcCCHHHHHHHHHHhc------
Confidence 368999999 89999999999861 24 589999999998887653100
Q ss_pred hHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
...+ .+..+++.++|+||.+...|
T Consensus 203 ---------~~~i---~~l~~~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 203 ---------GGKI---LSLEEALPEADIVVWVASMP 226 (340)
T ss_pred ---------cccH---HhHHHHHccCCEEEECCcCC
Confidence 0111 24567899999999887554
No 386
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.86 E-value=0.35 Score=50.22 Aligned_cols=93 Identities=13% Similarity=0.089 Sum_probs=61.1
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEE
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAI 475 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adal 475 (598)
+|+|+|+ ...+..++..|.+.|.+|.+||+.... .. .+.. . +.....++.++++++|++
T Consensus 1 ~IgvIG~----------G~mG~~iA~~l~~~G~~V~~~dr~~~~--~~-~~~~----~----g~~~~~~~~~~~~~aDiv 59 (291)
T TIGR01505 1 KVGFIGL----------GIMGSPMSINLAKAGYQLHVTTIGPEV--AD-ELLA----A----GAVTAETARQVTEQADVI 59 (291)
T ss_pred CEEEEEe----------cHHHHHHHHHHHHCCCeEEEEcCCHHH--HH-HHHH----C----CCcccCCHHHHHhcCCEE
Confidence 5889887 357788999999999999999986422 21 1111 1 123456788999999999
Q ss_pred EEEeeccch-hhc--cHHHHHhccCCCcEEEecCCCC
Q psy11160 476 VVCTEWDEF-VTL--DYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 476 ii~t~~~~f-~~l--d~~~l~~~m~~~~iI~D~r~i~ 509 (598)
+++...+.. +.. ....+...+.+..+|+|...+.
T Consensus 60 i~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~ 96 (291)
T TIGR01505 60 FTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSIS 96 (291)
T ss_pred EEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence 999876432 111 1122334445556888977665
No 387
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.84 E-value=0.42 Score=52.03 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=33.5
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHH
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERI 68 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~ 68 (598)
+.++|.|+|. |++|..++..|.+ .|++|++++++..+.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~---------------------------~G~~V~~l~R~~~~~ 97 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVR---------------------------RGYNVVAVAREKSGI 97 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEEechhhc
Confidence 3578999987 9999999999999 899999999987654
No 388
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.79 E-value=0.2 Score=53.47 Aligned_cols=42 Identities=24% Similarity=0.443 Sum_probs=35.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSN 74 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~ 74 (598)
.+|.|||+|-+|+++|..|+. .|. +++++|.+.-....+++.
T Consensus 25 ~~VlVvG~GglGs~va~~La~---------------------------aGvg~i~lvD~D~Ve~sNL~RQ 67 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVR---------------------------AGVGKVTIVDRDYVEWSNLQRQ 67 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHH---------------------------cCCCeEEEEeCCccCHHHcCcc
Confidence 689999999999999999999 776 999999986555555543
No 389
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=92.73 E-value=0.41 Score=50.54 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=20.0
Q ss_pred CceEEEECC-ChhHHHHHHHHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~ 26 (598)
++||+|||+ ||+|.-+...|..
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~ 24 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAG 24 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhc
Confidence 579999995 9999999999988
No 390
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.71 E-value=0.75 Score=42.83 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=26.9
Q ss_pred CHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 100 DIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 100 ~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
++++++++||+|+.+++.+.. +. .+.+++|.+|++-+
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~--------------i~------~~~ikpGa~Vidvg 100 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK--------------VP------TEWIKPGATVINCS 100 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc--------------cC------HHHcCCCCEEEEcC
Confidence 677889999999999877621 11 34578999988533
No 391
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=92.71 E-value=0.62 Score=40.45 Aligned_cols=106 Identities=14% Similarity=0.068 Sum_probs=65.0
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
..+|.-||+|.-..++...-.. .|.+|+++|.|++.++..++...
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~---------------------------~~~~v~gvD~s~~~~~~a~~~~~-------- 46 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF---------------------------PGARVVGVDISPEMLEIARERAA-------- 46 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH---------------------------TTSEEEEEESSHHHHHHHHHHHH--------
T ss_pred CCEEEEEcCcCCHHHHHHHhcC---------------------------CCCEEEEEeCCHHHHHHHHHHHH--------
Confidence 3578899998855544433223 68899999999999988775320
Q ss_pred HHHhhhcCCceEE-ecCH---HHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 85 EVVKKTRDVNLFF-STDI---KSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 85 ~~~~~~~~~~~~~-~~~~---~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
......++++ ..|. .+.....|+|+..- .... ...+....+++++.+.+.++++-.+++.+
T Consensus 47 ---~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~-~~~~-------~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 47 ---EEGLSDRITFVQGDAEFDPDFLEPFDLVICSG-FTLH-------FLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ---HTTTTTTEEEEESCCHGGTTTSSCEEEEEECS-GSGG-------GCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hcCCCCCeEEEECccccCcccCCCCCEEEECC-Cccc-------cccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 0001123332 2333 22345688887764 1110 01223567788899999999988877653
No 392
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.69 E-value=1.2 Score=49.24 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=33.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
.+||+|+|+|.-|.++|..|.+ .|++|+++|.++.-
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~---------------------------~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLK---------------------------LGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHH---------------------------CCCeEEEEcCCCCc
Confidence 6899999999999999999999 89999999987655
No 393
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=92.68 E-value=0.51 Score=50.22 Aligned_cols=85 Identities=9% Similarity=0.241 Sum_probs=51.5
Q ss_pred EEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEE-EeCCHHHHHHHHcC-CCCCCCCChHH
Q psy11160 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV-VDKSEERIRQWNSN-KLPIYEPGLDE 85 (598)
Q Consensus 8 I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-~d~~~~~~~~~~~~-~~~~~e~~~~~ 85 (598)
|+|+|+|.+|...+..+... .+.+|++ .|.++++...+... ..+.+. ...+
T Consensus 1 VaInG~GrIGr~varav~~~--------------------------~d~elVaVnD~~~~~~a~lA~~lgyds~~-~~~~ 53 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ--------------------------DDMKLVGVTKTSPDFEAYRAKELGIPVYA-ASEE 53 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC--------------------------CCcEEEEEecCChHHHHHHHHHhCCCEEe-ecCC
Confidence 68999999999999988761 4456554 56777754444321 112211 1110
Q ss_pred HHhhhcCCceEEecCHHHHhccCcEEEEecCCCC
Q psy11160 86 VVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~ 119 (598)
...+....++....++++.+.++|+|+.|+|...
T Consensus 54 ~~~~~~~~~l~v~g~~eeLl~~vDiVve~Tp~~~ 87 (333)
T TIGR01546 54 FIPRFEEAGIEVAGTLEDLLEKVDIVVDATPGGI 87 (333)
T ss_pred cceEeccCceEecCCHHHHhhcCCEEEECCCCCC
Confidence 0000012346667788888899999999976543
No 394
>PLN00198 anthocyanidin reductase; Provisional
Probab=92.57 E-value=0.36 Score=50.93 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=31.1
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
.++|.|.| .|++|..++..|.+ .|++|+++.++.+.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~---------------------------~g~~V~~~~r~~~~ 45 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQ---------------------------KGYAVNTTVRDPEN 45 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHH---------------------------CCCEEEEEECCCCC
Confidence 46899998 79999999999999 89999888877543
No 395
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=92.57 E-value=0.15 Score=55.48 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=30.9
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
||+ ..+|.|||+|.+|+.+|..|++ .|++|+++|+.
T Consensus 1 ~m~-~~dV~IvGaG~~Gl~~A~~L~~---------------------------~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQ-SVDVAIIGGGMVGLALAAALKE---------------------------SDLRIAVIEGQ 36 (405)
T ss_pred CCC-cCCEEEECccHHHHHHHHHHHh---------------------------CCCEEEEEcCC
Confidence 565 3589999999999999999999 78888888874
No 396
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.54 E-value=0.17 Score=52.76 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=29.3
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
+|+|||.|..|+++|..|++ .|++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~---------------------------~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR---------------------------RGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH---------------------------TTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHH---------------------------CCCeEEEEeec
Confidence 48999999999999999999 89999999985
No 397
>PRK06185 hypothetical protein; Provisional
Probab=92.53 E-value=0.14 Score=55.57 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=30.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
....|+|||.|.+|+.+|..|++ .|++|+++|+++
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~---------------------------~G~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR---------------------------AGVDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEecCC
Confidence 34679999999999999999999 788888888764
No 398
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=92.53 E-value=0.68 Score=48.43 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=49.8
Q ss_pred CCCCCceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCC-CCC
Q psy11160 1 MVQTISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNK-LPI 78 (598)
Q Consensus 1 m~~~~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~-~~~ 78 (598)
|....++|.|.| .|++|..++..|.+ .|++|++..++....+.+..-. ..-
T Consensus 1 ~~~~~~~vlVTGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~~~~~~~ 53 (322)
T PLN02986 1 MNGGGKLVCVTGASGYIASWIVKLLLL---------------------------RGYTVKATVRDLTDRKKTEHLLALDG 53 (322)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEECCCcchHHHHHHHhccC
Confidence 333457899998 59999999999999 8999998887765433222100 000
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
..+.+. .+...++-..+..++++++|+||-+..
T Consensus 54 ~~~~~~-----~~~~Dl~~~~~~~~~~~~~d~vih~A~ 86 (322)
T PLN02986 54 AKERLK-----LFKADLLEESSFEQAIEGCDAVFHTAS 86 (322)
T ss_pred CCCceE-----EEecCCCCcchHHHHHhCCCEEEEeCC
Confidence 000000 000112222345567788999888864
No 399
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=92.47 E-value=0.5 Score=49.76 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=19.3
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
.||+|+|. ||+|.-+...|+.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~ 23 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSG 23 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhC
Confidence 48999987 9999999999998
No 400
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=92.46 E-value=0.15 Score=55.30 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=30.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.+.|+|||+|.+|+.+|..|++ .|++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~---------------------------~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR---------------------------AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEccC
Confidence 4689999999999999999999 88999999987
No 401
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.44 E-value=0.69 Score=43.60 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=56.9
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhh---ccccc-ccCCCceEecCChhhhccC
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLK---ELDPE-LLDHNAVSILDDPYDTVKN 471 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~al~~ 471 (598)
||+|+|- .+-+..++..|...|.+|.+|.+.-..-+..+... .+.+. .+. ..+....|+.+++++
T Consensus 1 KI~ViGa----------G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~-~~i~~t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGA----------GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLP-ENIKATTDLEEALED 69 (157)
T ss_dssp EEEEESS----------SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEE-TTEEEESSHHHHHTT
T ss_pred CEEEECc----------CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccC-cccccccCHHHHhCc
Confidence 5888885 46788999999999999999988542211111110 01111 122 256788999999999
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCC
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKP 499 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~ 499 (598)
+|++|++++-..+++ -.+++.....+.
T Consensus 70 ad~IiiavPs~~~~~-~~~~l~~~l~~~ 96 (157)
T PF01210_consen 70 ADIIIIAVPSQAHRE-VLEQLAPYLKKG 96 (157)
T ss_dssp -SEEEE-S-GGGHHH-HHHHHTTTSHTT
T ss_pred ccEEEecccHHHHHH-HHHHHhhccCCC
Confidence 999999998776554 234444444333
No 402
>PLN02583 cinnamoyl-CoA reductase
Probab=92.44 E-value=0.57 Score=48.71 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.1
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.++|.|.|. |++|..++..|.+ +|++|+++.++.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~---------------------------~G~~V~~~~R~~ 40 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLS---------------------------RGYTVHAAVQKN 40 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh---------------------------CCCEEEEEEcCc
Confidence 467999986 9999999999999 899999998853
No 403
>PLN02256 arogenate dehydrogenase
Probab=92.43 E-value=4.9 Score=42.29 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=59.6
Q ss_pred cCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhc-c
Q psy11160 392 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV-K 470 (598)
Q Consensus 392 ~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-~ 470 (598)
.+..+|+|+|+. ..+-.++..|.+.|.+|.+||+... .+....+ ++....+..+++ .
T Consensus 34 ~~~~kI~IIG~G----------~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~-----------gv~~~~~~~e~~~~ 91 (304)
T PLN02256 34 SRKLKIGIVGFG----------NFGQFLAKTFVKQGHTVLATSRSDY-SDIAAEL-----------GVSFFRDPDDFCEE 91 (304)
T ss_pred CCCCEEEEEeeC----------HHHHHHHHHHHhCCCEEEEEECccH-HHHHHHc-----------CCeeeCCHHHHhhC
Confidence 356799999973 3566788999999999999998742 2221111 123345666665 4
Q ss_pred CCCEEEEEeeccchhhccHHHH-HhccCCCcEEEecCCC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRI-YEGMMKPAYIFDGRKI 508 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l-~~~m~~~~iI~D~r~i 508 (598)
++|+||+++.-..+.++- ..+ ...+.+..+|+|.-.+
T Consensus 92 ~aDvVilavp~~~~~~vl-~~l~~~~l~~~~iviDv~Sv 129 (304)
T PLN02256 92 HPDVVLLCTSILSTEAVL-RSLPLQRLKRSTLFVDVLSV 129 (304)
T ss_pred CCCEEEEecCHHHHHHHH-HhhhhhccCCCCEEEecCCc
Confidence 699999999876544321 222 2223444588887764
No 404
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.40 E-value=0.35 Score=56.16 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=31.6
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
..+|+|||.|..|+..|..|++ .|++|++|++.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~---------------------------~G~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILAR---------------------------AGVQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------cCCcEEEEeCCCC
Confidence 4789999999999999999999 7899999998763
No 405
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.30 E-value=0.65 Score=49.39 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=34.7
Q ss_pred CceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHH
Q psy11160 5 ISHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQW 71 (598)
Q Consensus 5 ~~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~ 71 (598)
.|+|.|.| .|++|..++..|+. .|++|++++++.++.+.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~---------------------------~G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQ---------------------------RGYTVHATLRDPAKSLHL 50 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEeCChHHHHHH
Confidence 47899998 59999999999999 899999999988766544
No 406
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=92.26 E-value=1.4 Score=42.05 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=55.5
Q ss_pred HHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEec
Q psy11160 383 QLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSIL 462 (598)
Q Consensus 383 ~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (598)
++++...-++++|+|.|+|-+ +.-..+|+..|.++|+.|...+-..
T Consensus 25 ~lL~~~~~~l~Gk~v~VvGrs---------~~VG~Pla~lL~~~~atVt~~h~~T------------------------- 70 (160)
T PF02882_consen 25 ELLEYYGIDLEGKKVVVVGRS---------NIVGKPLAMLLLNKGATVTICHSKT------------------------- 70 (160)
T ss_dssp HHHHHTT-STTT-EEEEE-TT---------TTTHHHHHHHHHHTT-EEEEE-TTS-------------------------
T ss_pred HHHHhcCCCCCCCEEEEECCc---------CCCChHHHHHHHhCCCeEEeccCCC-------------------------
Confidence 344443334689999999952 2356789999999999999976532
Q ss_pred CChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCC
Q psy11160 463 DDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 463 ~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d 510 (598)
.++.+.++.||++|.++..+.|-..+| .++..+++|..--+.
T Consensus 71 ~~l~~~~~~ADIVVsa~G~~~~i~~~~------ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGKPNLIKADW------IKPGAVVIDVGINYV 112 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSSTT-B-GGG------S-TTEEEEE--CEEE
T ss_pred CcccceeeeccEEeeeecccccccccc------ccCCcEEEecCCccc
Confidence 456677889999999999998855443 234458998775544
No 407
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.22 E-value=0.46 Score=49.27 Aligned_cols=73 Identities=12% Similarity=0.351 Sum_probs=54.4
Q ss_pred ceEEEECCC-hhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAG-YVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G-~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++|||-+ .+|.|+|..|.. .|..|+....+.
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~---------------------------~~atVtv~hs~t------------------- 186 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLN---------------------------ADATVTICHSKT------------------- 186 (279)
T ss_pred CEEEEECCCccccHHHHHHHHh---------------------------CCCeeEEEecCh-------------------
Confidence 689999998 999999999988 678888877532
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.++.+.+++||++|.+++.|. .+. ...++++.+||+-++-
T Consensus 187 --------------~~L~~~~~~ADIvI~Avgk~~--------------lv~------~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 187 --------------ENLKAELRQADILVSAAGKAG--------------FIT------PDMVKPGATVIDVGIN 226 (279)
T ss_pred --------------hHHHHHHhhCCEEEECCCccc--------------ccC------HHHcCCCcEEEEeecc
Confidence 235567899999999997652 111 1225899999986654
No 408
>KOG2741|consensus
Probab=92.22 E-value=1.3 Score=46.86 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=56.2
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEE-EEeCCHHHHHHHHcCC-CCCCCC
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVT-VVDKSEERIRQWNSNK-LPIYEP 81 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~d~~~~~~~~~~~~~-~~~~e~ 81 (598)
..-|+||+|+|.++.-.+..|.. .|. .+|+|+ +.|++.++...+.++. .|
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~-~p~-----------------------s~~~Ivava~~s~~~A~~fAq~~~~~---- 56 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHT-LPE-----------------------SNHQIVAVADPSLERAKEFAQRHNIP---- 56 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhcc-Ccc-----------------------cCcEEEEEecccHHHHHHHHHhcCCC----
Confidence 34689999999999988888765 110 367765 4689999988877542 21
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccC--cEEEEecCCCCC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKA--QLIFISVNTPTK 120 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~a--dviii~v~tp~~ 120 (598)
+.++..++++.+++. |+|.|+.|+|.+
T Consensus 57 ------------~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351)
T KOG2741|consen 57 ------------NPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351)
T ss_pred ------------CCccccCHHHHhcCCCcCEEEeCCCCccH
Confidence 245667888877765 999999988864
No 409
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.18 E-value=0.59 Score=48.69 Aligned_cols=73 Identities=18% Similarity=0.399 Sum_probs=55.2
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++|||- ..||.|+|..|.. .|..|+++..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~---------------------------~~aTVtichs--------------------- 187 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLR---------------------------EDATVTLAHS--------------------- 187 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Confidence 68999997 6789999999998 6778887642
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
.|.++++.+++||+||.+++.|-- + =...+++|.+|++-.+-
T Consensus 188 ------------~T~~l~~~~~~ADIvIsAvGkp~~--------------i------~~~~vk~GavVIDVGin 229 (287)
T PRK14173 188 ------------KTQDLPAVTRRADVLVVAVGRPHL--------------I------TPEMVRPGAVVVDVGIN 229 (287)
T ss_pred ------------CCCCHHHHHhhCCEEEEecCCcCc--------------c------CHHHcCCCCEEEEccCc
Confidence 134667788999999999988731 1 12456899999985543
No 410
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.16 E-value=0.55 Score=54.64 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=30.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.++|+|||.|..|++.|..|++ .|++|+++|+++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~---------------------------~G~~V~V~E~~~ 360 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLAR---------------------------NGVAVTVYDRHP 360 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEecCC
Confidence 4689999999999999999999 789999999764
No 411
>PRK07538 hypothetical protein; Provisional
Probab=92.14 E-value=0.15 Score=55.61 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=30.8
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|+|.|||+|..|+.+|..|++ .|++|++++++++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ---------------------------RGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEEcCCc
Confidence 589999999999999999999 7899999998754
No 412
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=92.07 E-value=0.16 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.0
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~ 26 (598)
|.....+|.|||.|..|+++|..|++
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~ 26 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQ 26 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhc
Confidence 44556789999999999999999999
No 413
>PRK07588 hypothetical protein; Provisional
Probab=92.07 E-value=0.15 Score=54.95 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=30.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
++|+|||.|..|+++|..|++ .|++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR---------------------------YGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH---------------------------CCCceEEEeCCCC
Confidence 489999999999999999999 7888888887643
No 414
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=92.06 E-value=0.32 Score=49.67 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=44.9
Q ss_pred EEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHHH
Q psy11160 8 ICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEV 86 (598)
Q Consensus 8 I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 86 (598)
|.|.| +|++|..++..|++ .|++|+++++++.....+.. ..+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~---------------------------~g~~V~~~~r~~~~~~~~~~-------~~~~~- 45 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTK---------------------------DGHEVTILTRSPPAGANTKW-------EGYKP- 45 (292)
T ss_pred CEEEcccchhhHHHHHHHHH---------------------------cCCEEEEEeCCCCCCCcccc-------eeeec-
Confidence 35676 59999999999999 89999999998765432210 00000
Q ss_pred HhhhcCCceEEecCHHHHhccCcEEEEecCCC
Q psy11160 87 VKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~adviii~v~tp 118 (598)
... ....+++.++|+||-+...+
T Consensus 46 --------~~~-~~~~~~~~~~D~Vvh~a~~~ 68 (292)
T TIGR01777 46 --------WAP-LAESEALEGADAVINLAGEP 68 (292)
T ss_pred --------ccc-cchhhhcCCCCEEEECCCCC
Confidence 000 22334678899999988654
No 415
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.05 E-value=0.57 Score=52.27 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=30.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..+|+|||.|..|+..|..|+. .|++|+++|..+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~---------------------------~G~~V~i~e~~~ 174 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILAR---------------------------AGVQVVVFDRHP 174 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHH---------------------------cCCeEEEEecCC
Confidence 4689999999999999999999 789999998764
No 416
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.03 E-value=0.66 Score=48.28 Aligned_cols=74 Identities=18% Similarity=0.407 Sum_probs=55.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCCh
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGL 83 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~ 83 (598)
..+|+|||- ..||.|+|..|.. .|..|++++..
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~---------------------------~~atVt~chs~------------------- 191 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLN---------------------------ENATVTYCHSK------------------- 191 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHH---------------------------CCCEEEEEeCC-------------------
Confidence 368999987 6799999999998 77889887531
Q ss_pred HHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecCC
Q psy11160 84 DEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTV 158 (598)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv 158 (598)
|.++.+.+++||++|.+++.|.- +. .+.+++|.+|++-++-
T Consensus 192 --------------t~~l~~~~~~ADIvI~AvG~p~~--------------i~------~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 192 --------------TKNLAELTKQADILIVAVGKPKL--------------IT------ADMVKEGAVVIDVGVN 232 (284)
T ss_pred --------------chhHHHHHHhCCEEEEecCCCCc--------------CC------HHHcCCCCEEEEeecc
Confidence 23566788999999999987731 11 2346899999986544
No 417
>PRK06126 hypothetical protein; Provisional
Probab=92.02 E-value=0.17 Score=57.33 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=30.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..+|.|||+|.+|+.+|..|++ .|++|+++|+.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~---------------------------~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGR---------------------------RGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHH---------------------------CCCcEEEEeCCC
Confidence 3589999999999999999999 788888888764
No 418
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.97 E-value=0.46 Score=54.23 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=29.5
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
..+|+|||+|..|+..|..|++ .|++|+++|..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~---------------------------~G~~V~v~e~~ 169 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRR---------------------------MGHAVTIFEAG 169 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEecC
Confidence 4689999999999999999999 78889999864
No 419
>PLN02686 cinnamoyl-CoA reductase
Probab=91.94 E-value=0.67 Score=49.90 Aligned_cols=41 Identities=12% Similarity=0.275 Sum_probs=34.7
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHH
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQW 71 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~ 71 (598)
+.++|.|.|. |++|..++..|+. .|++|+++.++.+..+.+
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~---------------------------~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLR---------------------------HGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHH
Confidence 3568999986 9999999999999 899999988887766554
No 420
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.89 E-value=0.95 Score=47.46 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=56.4
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++++++|+|+|=+ +.....++..|.++|++|.+++..- .++.++++
T Consensus 155 ~~~Gk~V~viGrs---------~~mG~PmA~~L~~~g~tVtv~~~rT-------------------------~~l~e~~~ 200 (296)
T PRK14188 155 DLSGLNAVVIGRS---------NLVGKPMAQLLLAANATVTIAHSRT-------------------------RDLPAVCR 200 (296)
T ss_pred CCCCCEEEEEcCC---------cchHHHHHHHHHhCCCEEEEECCCC-------------------------CCHHHHHh
Confidence 4589999999921 2467889999999999999986421 24567788
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR 506 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r 506 (598)
.||++|.++..+++-.-+| +++-.+|+|.-
T Consensus 201 ~ADIVIsavg~~~~v~~~~------lk~GavVIDvG 230 (296)
T PRK14188 201 RADILVAAVGRPEMVKGDW------IKPGATVIDVG 230 (296)
T ss_pred cCCEEEEecCChhhcchhe------ecCCCEEEEcC
Confidence 9999999999988644332 33445888875
No 421
>KOG0022|consensus
Probab=91.87 E-value=0.54 Score=49.19 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=37.1
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCC-ceEEEEeCCHHHHHHHHc
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPN-IQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~~~~ 73 (598)
+.-+.++|+|||.||++.+..... .| -+++++|+|++|.+..++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka---------------------------~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKA---------------------------AGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHh---------------------------cCcccEEEEecCHHHHHHHHh
Confidence 345789999999999999987766 44 499999999999998774
No 422
>PRK06182 short chain dehydrogenase; Validated
Probab=91.83 E-value=1.1 Score=45.56 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=36.6
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
.++|.|.|+ |.+|..+|..|++ .|++|++.++++++++.+..
T Consensus 3 ~k~vlItGasggiG~~la~~l~~---------------------------~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAA---------------------------QGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHH---------------------------CCCEEEEEeCCHHHHHHHHh
Confidence 357888886 9999999999999 89999999999998877653
No 423
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=91.81 E-value=0.21 Score=54.11 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=20.1
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
..|+|||.|.+|+++|..|++
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~ 23 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQE 23 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHH
Confidence 589999999999999999999
No 424
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=91.81 E-value=0.34 Score=56.43 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=30.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.++|+|||.|..|+..|..|+. .|++|+++|.++.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~---------------------------~G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLR---------------------------KGHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---------------------------CCCcEEEEecCCC
Confidence 4689999999999999999999 7888998887654
No 425
>PRK12320 hypothetical protein; Provisional
Probab=91.78 E-value=1 Score=52.63 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=30.7
Q ss_pred ceEEEEC-CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIG-AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG-~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
|||.|.| +|++|..++..|.+ .|++|+++|+++.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~---------------------------~G~~Vi~ldr~~~ 35 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIA---------------------------AGHTVSGIAQHPH 35 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHh---------------------------CCCEEEEEeCChh
Confidence 5899999 69999999999999 8999999998754
No 426
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.77 E-value=0.35 Score=48.60 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=33.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
.||.|+|+|-+|+.+|..|+. .|. +++++|.+.-....+++
T Consensus 22 ~~VlivG~GglGs~va~~La~---------------------------~Gvg~i~lvD~D~ve~sNL~R 63 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAA---------------------------AGVGKLGLVDDDVVELSNLQR 63 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHH---------------------------cCCCEEEEEcCCEEcCccccc
Confidence 689999999999999999999 564 88888877544444544
No 427
>PLN00135 malate dehydrogenase
Probab=91.74 E-value=1.1 Score=47.19 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=64.5
Q ss_pred ccccccCCCCceEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCC
Q psy11160 46 CSVIALKCPNIQVTVVDKSE--ERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFG 123 (598)
Q Consensus 46 ~~~~~~~~~g~~v~~~d~~~--~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~ 123 (598)
+.++|+. ..+.+.++|+++ ++.+.... ++.+.... ....++.+++..+++++||+||++...|.+++.
T Consensus 5 g~~~g~~-~~~~l~L~D~~~~~~~a~g~~~--------Dl~da~~~-~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~ 74 (309)
T PLN00135 5 GVMLGPD-QPVILHMLDIPPAAEALNGVKM--------ELIDAAFP-LLKGVVATTDVVEACKGVNIAVMVGGFPRKEGM 74 (309)
T ss_pred ccccCCC-CeEEEEEecCcccccchhhHHH--------HHHhhhHH-hcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCC
Confidence 4566665 468999999988 77654321 01111100 011355566744689999999999988876543
Q ss_pred CCCC-CCcchHHHHHHHHHHHHHcCCCcEEEEecCCchHHHHHHHH
Q psy11160 124 NGKG-RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMN 168 (598)
Q Consensus 124 ~~~~-~~~~~~~~~~~~~~i~~~~~~~~ivv~~STv~~~~~~~~~~ 168 (598)
++.+ -..+.+.+++....|.++..++.++++-| -|....-.++.
T Consensus 75 sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvs-NPvDv~t~~~~ 119 (309)
T PLN00135 75 ERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVA-NPANTNALILK 119 (309)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeC-CcHHHHHHHHH
Confidence 2111 12245566777777777655555554434 56655544443
No 428
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=91.69 E-value=0.78 Score=51.48 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=75.0
Q ss_pred CCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhh-hhhhhhcccccccCCCceEecCChhhhccC-
Q psy11160 394 DKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQ-IIQDLKELDPELLDHNAVSILDDPYDTVKN- 471 (598)
Q Consensus 394 ~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~- 471 (598)
-.+|+++||. .....+++.|.+.|++|.+||.-....+ +.+.. ...|.. .+..+.++.++++.
T Consensus 6 ~~~IG~IGLG----------~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~----~~~Ga~-~~~~a~s~~e~v~~l 70 (493)
T PLN02350 6 LSRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERA----KKEGNL-PLYGFKDPEDFVLSI 70 (493)
T ss_pred CCCEEEEeeH----------HHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh----hhcCCc-ccccCCCHHHHHhcC
Confidence 3579999984 6788999999999999999998543221 11100 000211 22356788888876
Q ss_pred --CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh------hhhhhccceeee
Q psy11160 472 --THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNVHT 523 (598)
Q Consensus 472 --adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y~~ 523 (598)
+|+|+++....+--+--++.+...+.+..+|+|+.++.-. +.+.+.|+.|-.
T Consensus 71 ~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fld 130 (493)
T PLN02350 71 QKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLG 130 (493)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 9999999887763322224555556556699999999632 344456776643
No 429
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.63 E-value=0.9 Score=50.76 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=73.7
Q ss_pred CeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc---C
Q psy11160 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK---N 471 (598)
Q Consensus 395 ~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~---~ 471 (598)
.+|+|+|+ ....-.++..|.+.|++|.+||.-....+ .+.......| . .+..+.++.++++ .
T Consensus 2 ~~IgvIGL----------G~MG~~lA~nL~~~G~~V~v~dr~~~~~~---~l~~~~~~~g-~-~i~~~~s~~e~v~~l~~ 66 (470)
T PTZ00142 2 SDIGLIGL----------AVMGQNLALNIASRGFKISVYNRTYEKTE---EFVKKAKEGN-T-RVKGYHTLEELVNSLKK 66 (470)
T ss_pred CEEEEEeE----------hHHHHHHHHHHHHCCCeEEEEeCCHHHHH---HHHHhhhhcC-C-cceecCCHHHHHhcCCC
Confidence 37999998 36788999999999999999997543211 1100000001 1 1335678888876 4
Q ss_pred CCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh------hhhhhccceeee
Q psy11160 472 THAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH------DALLDIGFNVHT 523 (598)
Q Consensus 472 adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~------~~~~~~G~~y~~ 523 (598)
+|+++++....+.-+--++.+...+.+..+|+|+.+.... +.+.+.|+.|-.
T Consensus 67 ~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fld 124 (470)
T PTZ00142 67 PRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLG 124 (470)
T ss_pred CCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEc
Confidence 8999998777654332335566666666699999998632 444456776643
No 430
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=91.60 E-value=0.2 Score=54.01 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=20.1
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
.+|+|||.|..|+++|..|++
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~ 24 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK 24 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh
Confidence 589999999999999999999
No 431
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=91.59 E-value=1.4 Score=44.98 Aligned_cols=115 Identities=14% Similarity=0.080 Sum_probs=70.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|.|||+|-+|.++|..|+. .|. .++++|-+.-....+++....-.+-|-.
T Consensus 27 SrVLVVG~GGLGsEVAKnLaL---------------------------AGVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~ 79 (287)
T PTZ00245 27 TSVALHGVAGAAAEAAKNLVL---------------------------AGVRAVAVADEGLVTDADVCTNYLMQGEAGGT 79 (287)
T ss_pred CeEEEECCCchHHHHHHHHHH---------------------------cCCCeEEEecCCccchhhhccccccccccCCc
Confidence 689999999999999999999 674 7999998876666666543211111211
Q ss_pred H---HHhhh--cCC--ceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 E---VVKKT--RDV--NLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~---~~~~~--~~~--~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
. ...+. ... .+......-+.....++++++..+ .+..++.+...++--.+++..+|
T Consensus 80 KAeaAa~~L~eLNP~V~V~~i~~rld~~n~fqvvV~~~~~-----------------le~av~~~~~~~~~~d~~~l~~~ 142 (287)
T PTZ00245 80 RGARALGALQRLNPHVSVYDAVTKLDGSSGTRVTMAAVIT-----------------EEDAVPHVQAALPCADIVALHVT 142 (287)
T ss_pred HHHHHHHHHHHHCCCcEEEEcccccCCcCCceEEEEEccc-----------------HHHHHHHhccCCCcccEEEEEEe
Confidence 1 11110 111 222221111223456777777422 45566667666777789999999
Q ss_pred CchHHHH
Q psy11160 158 VPVRAAE 164 (598)
Q Consensus 158 v~~~~~~ 164 (598)
..+-+.-
T Consensus 143 ~g~~~~~ 149 (287)
T PTZ00245 143 CGPTVLA 149 (287)
T ss_pred cchhhhh
Confidence 9886653
No 432
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=91.55 E-value=0.21 Score=54.82 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=31.1
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
+++|.|||.|.+|+..|..|++ .|++|+++|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr---------------------------~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAK---------------------------RGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEEccCc
Confidence 3589999999999999999999 8999999996543
No 433
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=91.51 E-value=0.72 Score=48.18 Aligned_cols=93 Identities=11% Similarity=0.130 Sum_probs=61.7
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCCCEE
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAI 475 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~adal 475 (598)
+|+|+|+ ......+++.|.+.|++|.+||.....+.+.+ . +.....++.++++.+|++
T Consensus 2 ~Ig~IGl----------G~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~--------~----g~~~~~s~~~~~~~advV 59 (292)
T PRK15059 2 KLGFIGL----------GIMGTPMAINLARAGHQLHVTTIGPVADELLS--------L----GAVSVETARQVTEASDII 59 (292)
T ss_pred eEEEEcc----------CHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHH--------c----CCeecCCHHHHHhcCCEE
Confidence 6899887 35678899999999999999986432222211 1 224567888999999999
Q ss_pred EEEeeccc-hhhc--cHHHHHhccCCCcEEEecCCCCC
Q psy11160 476 VVCTEWDE-FVTL--DYKRIYEGMMKPAYIFDGRKILN 510 (598)
Q Consensus 476 ii~t~~~~-f~~l--d~~~l~~~m~~~~iI~D~r~i~d 510 (598)
+++..++. .++. ....+...+.+..+|+|...+-.
T Consensus 60 i~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p 97 (292)
T PRK15059 60 FIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISP 97 (292)
T ss_pred EEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCH
Confidence 99998863 1211 11122333344458999887754
No 434
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=91.51 E-value=0.32 Score=39.30 Aligned_cols=29 Identities=34% Similarity=0.471 Sum_probs=25.9
Q ss_pred EECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 10 CIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 10 viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
|||.|.-|+..|..|++ .|++|++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~---------------------------~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK---------------------------AGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHH---------------------------TTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHH---------------------------CCCcEEEEecCc
Confidence 79999999999999999 799999999863
No 435
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.48 E-value=0.2 Score=54.32 Aligned_cols=34 Identities=12% Similarity=0.367 Sum_probs=30.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.+|+|||+|..|+.+|..|++ .|++|+++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKD---------------------------SGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhc---------------------------CCCEEEEEecCCc
Confidence 579999999999999999999 7899999988754
No 436
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=91.47 E-value=0.52 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=20.7
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
.++|+|.|+|.||..+|..|.+
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~ 44 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAE 44 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 3699999999999999999999
No 437
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=91.47 E-value=0.23 Score=53.02 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=29.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..|+|||.|.+|+++|..|++ .|++|+++|++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~---------------------------~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLAR---------------------------RGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeccc
Confidence 469999999999999999999 688888888753
No 438
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.46 E-value=0.76 Score=47.77 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++++|||- ..||.|+|..|.. .|..|+++..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~---------------------------~~atVtichs--------------------- 189 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLN---------------------------ENATVTIAHS--------------------- 189 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++++.+++||+||.+++.|---.. ..+++|.+|++-++
T Consensus 190 ------------~T~~l~~~~~~ADIvI~AvG~~~~i~~--------------------~~vk~GavVIDvGi 230 (284)
T PRK14170 190 ------------RTKDLPQVAKEADILVVATGLAKFVKK--------------------DYIKPGAIVIDVGM 230 (284)
T ss_pred ------------CCCCHHHHHhhCCEEEEecCCcCccCH--------------------HHcCCCCEEEEccC
No 439
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.44 E-value=2.7 Score=46.87 Aligned_cols=112 Identities=11% Similarity=0.022 Sum_probs=65.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH-H---HHHHHcCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE-R---IRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~---~~~~~~~~~~~~e~ 81 (598)
.+|+|+|+|.-|.+.|..|.+ .|.+|+++|.++. . ..++.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~---------------------------~g~~v~~~d~~~~~~~~~~~~l~~~------- 54 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRA---------------------------HLPAQALTLFCNAVEAREVGALADA------- 54 (468)
T ss_pred CEEEEEccchhhHHHHHHHHH---------------------------cCCEEEEEcCCCcccchHHHHHhhc-------
Confidence 589999999999999999999 8999999996532 1 1122221
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHH----HHH--H--HHHHcC----CC
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEA----AAR--M--IAEIAT----DN 149 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~----~~~--~--i~~~~~----~~ 149 (598)
..........+.+.++|+||.+-.-|.+ .+.+...++ ++. + +..... ..
T Consensus 55 -----------~~~~~~~~~~~~~~~~d~vV~SpgI~~~--------~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~ 115 (468)
T PRK04690 55 -----------ALLVETEASAQRLAAFDVVVKSPGISPY--------RPEALAAAARGTPFIGGTALWFAEHAARDGVVP 115 (468)
T ss_pred -----------CEEEeCCCChHHccCCCEEEECCCCCCC--------CHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCC
Confidence 1111122223456789998888544432 122222211 000 1 111121 23
Q ss_pred cEEEEecCCchHHHHHHHHHH
Q psy11160 150 KIVVEKSTVPVRAAESIMNVL 170 (598)
Q Consensus 150 ~ivv~~STv~~~~~~~~~~~l 170 (598)
.+|-+..|.--.||..+...+
T Consensus 116 ~~IaITGTnGKTTTt~ll~~i 136 (468)
T PRK04690 116 GTVCVTGTKGKSTTTALLAHL 136 (468)
T ss_pred CEEEEeCCCCHHHHHHHHHHH
Confidence 688888888777776655543
No 440
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=91.42 E-value=0.26 Score=59.70 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=31.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..||+|||.|.-|++.|..|++ .||+|++||+..
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar---------------------------~G~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAV---------------------------EGFPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeeCC
Confidence 4789999999999999999999 899999999764
No 441
>KOG1399|consensus
Probab=91.40 E-value=0.22 Score=55.15 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=34.7
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQW 71 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~ 71 (598)
+.++++|||+|.-|++.|..|.+ .|++|++++++..---.|
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~---------------------------~g~~v~vfEr~~~iGGlW 45 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR---------------------------EGHEVVVFERTDDIGGLW 45 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH---------------------------CCCCceEEEecCCccceE
Confidence 35789999999999999999999 899999999876543333
No 442
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=91.32 E-value=0.2 Score=54.54 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=20.1
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
+||+|||.|..|+++|..|++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~ 21 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCK 21 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 589999999999999999998
No 443
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=91.32 E-value=1 Score=48.14 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~ 26 (598)
+||+|+|+ |++|..++..|..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~ 22 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAK 22 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHh
Confidence 48999996 9999999998887
No 444
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.31 E-value=0.82 Score=47.53 Aligned_cols=72 Identities=24% Similarity=0.467 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|+|||- ..||.|+|..|.. .|..|+++..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~---------------------------~~ATVt~chs--------------------- 190 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLN---------------------------AKATVTTCHR--------------------- 190 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEEcC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.|+.+.+++||+||.+++.|---.. ..+++|.+||+-++
T Consensus 191 ------------~T~dl~~~~k~ADIvIsAvGkp~~i~~--------------------~~vk~gavVIDvGi 231 (282)
T PRK14180 191 ------------FTTDLKSHTTKADILIVAVGKPNFITA--------------------DMVKEGAVVIDVGI 231 (282)
T ss_pred ------------CCCCHHHHhhhcCEEEEccCCcCcCCH--------------------HHcCCCcEEEEecc
No 445
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.28 E-value=0.8 Score=47.95 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|+|||- ..||.|+|..|.. .|..|+++..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~---------------------------~~atVtv~hs--------------------- 190 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLA---------------------------ANATVTIAHS--------------------- 190 (297)
T ss_pred CEEEEECCCccchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++++.+++||+||.+++.|---.. ..+++|.+||+-.+
T Consensus 191 ------------~T~~l~~~~~~ADIvIsAvGkp~~i~~--------------------~~ik~gavVIDvGi 231 (297)
T PRK14186 191 ------------RTQDLASITREADILVAAAGRPNLIGA--------------------EMVKPGAVVVDVGI 231 (297)
T ss_pred ------------CCCCHHHHHhhCCEEEEccCCcCccCH--------------------HHcCCCCEEEEecc
No 446
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.27 E-value=0.35 Score=51.50 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=30.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
++||.|.|. |++|..++..|.+ .|++|+++|+..
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~---------------------------~g~~V~~~d~~~ 49 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLF---------------------------LNQTVIGLDNFS 49 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHH---------------------------CCCEEEEEeCCC
Confidence 479999996 9999999999999 799999999854
No 447
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.24 E-value=1.4 Score=44.30 Aligned_cols=74 Identities=24% Similarity=0.323 Sum_probs=47.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc---eEEEEeCC----HHHHHHHHcCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI---QVTVVDKS----EERIRQWNSNKLPI 78 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~v~~~d~~----~~~~~~~~~~~~~~ 78 (598)
++|.|+|+|-+|..+|..|+. .|. +|+++|++ .++.+.+....
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~---------------------------~G~~~~~i~ivdr~gl~~~~r~~~L~~~~--- 75 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLA---------------------------AGAKPENIVVVDSKGVIYEGREDDLNPDK--- 75 (226)
T ss_pred CEEEEECchHHHHHHHHHHHH---------------------------cCcCcceEEEEeCCCccccccchhhhHHH---
Confidence 689999999999999999998 564 69999998 44432221100
Q ss_pred CCCChHHHHhhhcCCceEEecCHHHHhccCcEEEEecC
Q psy11160 79 YEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVN 116 (598)
Q Consensus 79 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~ 116 (598)
.++.+...... ...++.++++++|++|-+++
T Consensus 76 -----~~la~~~~~~~--~~~~l~~~l~~~dvlIgaT~ 106 (226)
T cd05311 76 -----NEIAKETNPEK--TGGTLKEALKGADVFIGVSR 106 (226)
T ss_pred -----HHHHHHhccCc--ccCCHHHHHhcCCEEEeCCC
Confidence 00111100001 11356678899999998875
No 448
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=91.21 E-value=0.24 Score=53.75 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=30.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.+|+|||.|..|+++|..|++ .|++|+++|+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~---------------------------~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK---------------------------AGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH---------------------------CCCCEEEEECCCC
Confidence 589999999999999999999 7899999998764
No 449
>PRK09126 hypothetical protein; Provisional
Probab=91.21 E-value=0.22 Score=53.62 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=32.3
Q ss_pred CCCCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 1 m~~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
||+ .+|.|||+|..|+.+|..|++ .|++|+++|+.+.
T Consensus 1 ~~~--~dviIvGgG~aGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 37 (392)
T PRK09126 1 MMH--SDIVVVGAGPAGLSFARSLAG---------------------------SGLKVTLIERQPL 37 (392)
T ss_pred CCc--ccEEEECcCHHHHHHHHHHHh---------------------------CCCcEEEEeCCCc
Confidence 554 579999999999999999999 8999999998653
No 450
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.19 E-value=0.83 Score=47.47 Aligned_cols=72 Identities=15% Similarity=0.343 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|+|||- ..||.|+|..|.. .|..|++...
T Consensus 157 k~vvViGrS~iVGkPla~lL~~---------------------------~~atVtichs--------------------- 188 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVN---------------------------HDATVTIAHS--------------------- 188 (282)
T ss_pred CEEEEECCCccchHHHHHHHHH---------------------------CCCEEEEECC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
-|.++++.+++||+||.+++.|---.. +.+++|.+||+-++
T Consensus 189 ------------~T~~l~~~~~~ADIvI~AvG~p~~i~~--------------------~~vk~GavVIDvGi 229 (282)
T PRK14169 189 ------------KTRNLKQLTKEADILVVAVGVPHFIGA--------------------DAVKPGAVVIDVGI 229 (282)
T ss_pred ------------CCCCHHHHHhhCCEEEEccCCcCccCH--------------------HHcCCCcEEEEeec
No 451
>PRK08013 oxidoreductase; Provisional
Probab=91.09 E-value=0.24 Score=53.82 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=30.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
..|+|||+|.+|+.+|..|++ .|++|+++|+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~---------------------------~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQG---------------------------SGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhh---------------------------CCCEEEEEeCCCC
Confidence 479999999999999999999 7888888888764
No 452
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.01 E-value=0.54 Score=47.89 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=37.8
Q ss_pred CCCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcC
Q psy11160 3 QTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSN 74 (598)
Q Consensus 3 ~~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~ 74 (598)
++..||.|||+|-+|+.++..|+.- |=.+..+|.. .|.+++++|.|.=....+++.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~---------------G~a~~~~G~~-~g~~i~lvD~D~Ve~sNLnRQ 64 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARL---------------HHALKALGHP-GGLAVTVYDDDTVSEANVGRQ 64 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHc---------------cccccccCCC-CCCEEEEECCCEEccchhhcc
Confidence 4567999999999999999999980 0001112221 145899999876655566654
No 453
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.00 E-value=0.25 Score=53.14 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.9
Q ss_pred ceEEEECCChhHHHHHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~ 26 (598)
.+|+|||.|.+|+++|..|++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc
Confidence 579999999999999999999
No 454
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.99 E-value=0.28 Score=44.86 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=31.2
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQW 71 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~ 71 (598)
..||+|+|+|.+|+.+|..|+. .|. +++++|.+.=....+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~---------------------------~Gv~~i~lvD~d~v~~~nl 42 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLAR---------------------------SGVGKITLVDDDIVEPSNL 42 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH---------------------------HTTSEEEEEESSBB-GGGC
T ss_pred CCEEEEECcCHHHHHHHHHHHH---------------------------hCCCceeecCCcceeeccc
Confidence 3689999999999999999999 665 799999764333333
No 455
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.98 E-value=1.1 Score=46.66 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=33.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCce-EEEEeCCH---HHHHHHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQ-VTVVDKSE---ERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~~---~~~~~~~ 72 (598)
+++.|+|+|-.|.+++..|+. .|.+ |++++|++ ++.+.+.
T Consensus 127 k~vlI~GAGGagrAia~~La~---------------------------~G~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCAL---------------------------DGAKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHH---------------------------CCCCEEEEEeCCchHHHHHHHHH
Confidence 578999999999999999998 7875 99999996 6666554
No 456
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=90.97 E-value=0.57 Score=46.20 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=36.9
Q ss_pred CCCCCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 1 MVQTISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 1 m~~~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
|+.+.++|.|.|. |.+|..++..|++ .|++|+++++++++.+.+.
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~---------------------------~g~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAA---------------------------DGAKVVIYDSNEEAAEALA 46 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHH---------------------------CCCEEEEEeCChhHHHHHH
Confidence 4333468999986 9999999999999 8999999999988766543
No 457
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.95 E-value=1.1 Score=42.92 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=63.1
Q ss_pred HHHHHHHhcccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEe
Q psy11160 382 QQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSI 461 (598)
Q Consensus 382 ~~~i~~~~~~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (598)
.+.++....++.+++|+|+|.. +.-...+++.|.++|++|.+.+...
T Consensus 32 v~l~~~~~~~l~gk~vlViG~G---------~~~G~~~a~~L~~~g~~V~v~~r~~------------------------ 78 (168)
T cd01080 32 LELLKRYGIDLAGKKVVVVGRS---------NIVGKPLAALLLNRNATVTVCHSKT------------------------ 78 (168)
T ss_pred HHHHHHcCCCCCCCEEEEECCc---------HHHHHHHHHHHhhCCCEEEEEECCc------------------------
Confidence 3455555556789999999962 1135668999999999988877531
Q ss_pred cCChhhhccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCCCh
Q psy11160 462 LDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNH 511 (598)
Q Consensus 462 ~~~~~~al~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~d~ 511 (598)
.+..+.+.+||+||.+|.-+++ ++.+. +++..+|+|.-.=.|.
T Consensus 79 -~~l~~~l~~aDiVIsat~~~~i--i~~~~----~~~~~viIDla~prdv 121 (168)
T cd01080 79 -KNLKEHTKQADIVIVAVGKPGL--VKGDM----VKPGAVVIDVGINRVP 121 (168)
T ss_pred -hhHHHHHhhCCEEEEcCCCCce--ecHHH----ccCCeEEEEccCCCcc
Confidence 2356778899999999998774 44333 2345689998765443
No 458
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=90.89 E-value=0.92 Score=47.52 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+|+|||- ..||.|+|..|.. .|..|+++..
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~---------------------------~~ATVtvchs--------------------- 199 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLK---------------------------ADATVTVVHS--------------------- 199 (299)
T ss_pred CEEEEECCCccchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++++.+++||+||.+++.|..-.. +.+++|.+|++-++
T Consensus 200 ------------~T~nl~~~~~~ADIvv~AvGk~~~i~~--------------------~~vk~gavVIDvGi 240 (299)
T PLN02516 200 ------------RTPDPESIVREADIVIAAAGQAMMIKG--------------------DWIKPGAAVIDVGT 240 (299)
T ss_pred ------------CCCCHHHHHhhCCEEEEcCCCcCccCH--------------------HHcCCCCEEEEeec
No 459
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.84 E-value=0.95 Score=47.06 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++|||- ..||.|+|..|.. .|..|+++..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~---------------------------~~atVt~chs--------------------- 189 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLN---------------------------AGATVSVCHI--------------------- 189 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++++.+++||++|.+++.|---.. ..+++|.+||+-++
T Consensus 190 ------------~T~nl~~~~~~ADIvIsAvGkp~~i~~--------------------~~vk~GavVIDvGi 230 (282)
T PRK14166 190 ------------KTKDLSLYTRQADLIIVAAGCVNLLRS--------------------DMVKEGVIVVDVGI 230 (282)
T ss_pred ------------CCCCHHHHHhhCCEEEEcCCCcCccCH--------------------HHcCCCCEEEEecc
No 460
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.82 E-value=0.98 Score=46.99 Aligned_cols=72 Identities=15% Similarity=0.304 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++|+|||- ..||.|+|..|.. .|..|++.+.
T Consensus 160 k~vvViGrS~iVGkPla~lL~~---------------------------~~atVt~chs--------------------- 191 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTE---------------------------MNATVTLCHS--------------------- 191 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
-|.|+++.+++||+||.+++.|---.. ..+++|.+||+-.+
T Consensus 192 ------------~T~~l~~~~~~ADIvIsAvGk~~~i~~--------------------~~ik~gavVIDvGi 232 (284)
T PRK14177 192 ------------KTQNLPSIVRQADIIVGAVGKPEFIKA--------------------DWISEGAVLLDAGY 232 (284)
T ss_pred ------------CCCCHHHHHhhCCEEEEeCCCcCccCH--------------------HHcCCCCEEEEecC
No 461
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=90.78 E-value=1.4 Score=46.02 Aligned_cols=41 Identities=10% Similarity=0.288 Sum_probs=34.4
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCH---HHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSE---ERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~---~~~~~~~~ 73 (598)
.++.|+|+|-.+.+++..|+. .|. +|++++|++ ++.+.+.+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~---------------------------~g~~~i~i~nRt~~~~~ka~~la~ 169 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAI---------------------------EGLKEIKLFNRRDEFFDKALAFAQ 169 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHH---------------------------CCCCEEEEEeCCccHHHHHHHHHH
Confidence 579999999999999999998 564 899999994 57776654
No 462
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.78 E-value=0.29 Score=52.36 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=19.2
Q ss_pred eEEEECCChhHHHHHHHHHH
Q psy11160 7 HICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~ 26 (598)
.|+|||.|.+|+++|..|++
T Consensus 2 dvvIIGaGi~G~s~A~~La~ 21 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK 21 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH
Confidence 58999999999999999999
No 463
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=90.76 E-value=0.31 Score=52.44 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=29.9
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCC---CceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCP---NIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~v~~~d~~ 64 (598)
..+|.|||+|..|+.+|..|++ . |++|+++|+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~---------------------------~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSR---------------------------LSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhh---------------------------cccCCCEEEEEeCC
Confidence 3689999999999999999998 6 8999999984
No 464
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=90.66 E-value=0.87 Score=40.86 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=55.0
Q ss_pred ceEEEEC----CChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC
Q psy11160 6 SHICCIG----AGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP 81 (598)
Q Consensus 6 ~~I~viG----~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~ 81 (598)
++|+||| -+..|.-+...|.+ .|++|+.++.....+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~---------------------------~G~~v~~Vnp~~~~i------------- 40 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKA---------------------------AGYEVYPVNPKGGEI------------- 40 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHH---------------------------TT-EEEEESTTCSEE-------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHh---------------------------CCCEEEEECCCceEE-------------
Confidence 4799999 68899999999999 899999987643211
Q ss_pred ChHHHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEec
Q psy11160 82 GLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156 (598)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~S 156 (598)
.+.....++.+.-...|++++++|.. .+.++++++.+. ..+.+++..+
T Consensus 41 -----------~G~~~y~sl~e~p~~iDlavv~~~~~---------------~~~~~v~~~~~~-g~~~v~~~~g 88 (116)
T PF13380_consen 41 -----------LGIKCYPSLAEIPEPIDLAVVCVPPD---------------KVPEIVDEAAAL-GVKAVWLQPG 88 (116)
T ss_dssp -----------TTEE-BSSGGGCSST-SEEEE-S-HH---------------HHHHHHHHHHHH-T-SEEEE-TT
T ss_pred -----------CcEEeeccccCCCCCCCEEEEEcCHH---------------HHHHHHHHHHHc-CCCEEEEEcc
Confidence 24566677776347899999997532 456667777655 3556777666
No 465
>PRK06475 salicylate hydroxylase; Provisional
Probab=90.62 E-value=0.27 Score=53.41 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=30.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.||+|||+|..|+.+|..|++ +|++|+++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~---------------------------~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA---------------------------RGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh---------------------------CCCcEEEEecCCc
Confidence 589999999999999999999 7899999988653
No 466
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=90.54 E-value=0.26 Score=53.41 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=29.5
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
..|+|||+|.+|+++|..|++ .|++|+++|+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~---------------------------~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG---------------------------SGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc---------------------------CCCEEEEEcCCC
Confidence 479999999999999999999 788888888765
No 467
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.49 E-value=1 Score=47.04 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++|+|||- ..||.|+|..|.. .|..|+++..
T Consensus 161 k~vvViGrS~iVGkPla~lL~~---------------------------~~aTVt~chs--------------------- 192 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLG---------------------------ENCTVTTVHS--------------------- 192 (294)
T ss_pred CEEEEECCCccchHHHHHHHhh---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++.+.+++||+||.+++.|---.. ..++++.+||+-.+
T Consensus 193 ------------~T~~l~~~~~~ADIvVsAvGkp~~i~~--------------------~~ik~gaiVIDVGi 233 (294)
T PRK14187 193 ------------ATRDLADYCSKADILVAAVGIPNFVKY--------------------SWIKKGAIVIDVGI 233 (294)
T ss_pred ------------CCCCHHHHHhhCCEEEEccCCcCccCH--------------------HHcCCCCEEEEecc
No 468
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=0.19 Score=55.72 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=38.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH---HHHHHHcCCCCCCCCC
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE---RIRQWNSNKLPIYEPG 82 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~---~~~~~~~~~~~~~e~~ 82 (598)
|||+|+|+|.-|++.|..|++ +|++|+++..... |+..|..+....+|.|
T Consensus 1 ~rVai~GaG~AgL~~a~~La~---------------------------~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~g 53 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD---------------------------AGYDVTLYEARDRLGGKVASWRDSDGNHVEHG 53 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh---------------------------CCCceEEEeccCccCceeeeeecCCCCeeeee
Confidence 689999999999999999999 9999999987643 4555544333333433
No 469
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=90.30 E-value=0.38 Score=52.23 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=20.3
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
...|+|||.|.+|+++|..|++
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~ 51 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAK 51 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHH
Confidence 3479999999999999999998
No 470
>PTZ00188 adrenodoxin reductase; Provisional
Probab=90.29 E-value=0.58 Score=52.33 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=55.0
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDE 85 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~~ 85 (598)
.||+|||.|.-|+..|..|+.+ .|++|++|++.+.---.++.|..|-+ +.+..
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~--------------------------~g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~ 92 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH--------------------------ERVKVDIFEKLPNPYGLIRYGVAPDH-IHVKN 92 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh--------------------------cCCeEEEEecCCCCccEEEEeCCCCC-ccHHH
Confidence 5899999999999999976641 68999999987665444444544433 33322
Q ss_pred HHhh----hcC------CceEEecC--HHHHhccCcEEEEecCCC
Q psy11160 86 VVKK----TRD------VNLFFSTD--IKSAIQKAQLIFISVNTP 118 (598)
Q Consensus 86 ~~~~----~~~------~~~~~~~~--~~~~~~~adviii~v~tp 118 (598)
+... ... .+...-.+ .++..+..|.||++++..
T Consensus 93 v~~~f~~~~~~~~v~f~gnv~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 93 TYKTFDPVFLSPNYRFFGNVHVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred HHHHHHHHHhhCCeEEEeeeEecCccCHHHHHhcCCEEEEEcCCC
Confidence 2211 001 23333333 555567889999998764
No 471
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=90.26 E-value=0.32 Score=53.72 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=36.1
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceecccc-ccCCCc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKR-YVGGPT 45 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~-~~~~~~ 45 (598)
|+|+|||+|..|++.|..|.+..|+.++|+.++. ++||=-
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l 41 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLL 41 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceE
Confidence 5899999999999999999999999999999994 777643
No 472
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.24 E-value=1.7 Score=47.03 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=18.1
Q ss_pred ceEEEECC-ChhHHHHHH-HHHH
Q psy11160 6 SHICCIGA-GYVGGPTCS-VIAL 26 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~-~la~ 26 (598)
++|+|+|+ |++|.-|.. .|.+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~ 24 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEE 24 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhC
Confidence 68999998 999999998 5554
No 473
>KOG2614|consensus
Probab=90.23 E-value=0.33 Score=52.49 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=30.8
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
+.+|+|+|.|.+|++.|..|++ .|++|.+++.++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r---------------------------~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR---------------------------KGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH---------------------------cCCeEEEEeecc
Confidence 4689999999999999999999 899999999843
No 474
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=90.23 E-value=1.3 Score=46.44 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=61.2
Q ss_pred eEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhh---hccCC
Q psy11160 396 HIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYD---TVKNT 472 (598)
Q Consensus 396 ~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---al~~a 472 (598)
+|+|+|+ ......+++.|.+.|.+|.+||......+ .+.. .+ .....++.+ .++.+
T Consensus 2 ~Ig~IGl----------G~mG~~la~~L~~~g~~V~~~dr~~~~~~---~l~~----~g----~~~~~s~~~~~~~~~~~ 60 (298)
T TIGR00872 2 QLGLIGL----------GRMGANIVRRLAKRGHDCVGYDHDQDAVK---AMKE----DR----TTGVANLRELSQRLSAP 60 (298)
T ss_pred EEEEEcc----------hHHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHH----cC----CcccCCHHHHHhhcCCC
Confidence 6899997 35678899999999999999998543221 1111 11 122344444 34568
Q ss_pred CEEEEEeeccchhhccHHHHHhccCCCcEEEecCCCC
Q psy11160 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKIL 509 (598)
Q Consensus 473 dalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i~ 509 (598)
|++++++.....++. ++.+...+.+..+|+|+.+..
T Consensus 61 dvIi~~vp~~~~~~v-~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 61 RVVWVMVPHGIVDAV-LEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred CEEEEEcCchHHHHH-HHHHHhhCCCCCEEEECCCCC
Confidence 999999998744432 345555555556999998875
No 475
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=90.15 E-value=0.36 Score=51.42 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=28.5
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
.|+|||.|.+|+++|..|++ .|++|+++|..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~---------------------------~G~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR---------------------------RGLSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH---------------------------CCCeEEEEeCC
Confidence 58999999999999999999 78899999875
No 476
>KOG3124|consensus
Probab=90.10 E-value=0.66 Score=47.16 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=29.1
Q ss_pred HHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEE
Q psy11160 102 KSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153 (598)
Q Consensus 102 ~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv 153 (598)
.+.++.+|+++++|. |. .+.+++.++......++|++
T Consensus 56 ~~~~~~s~v~~~svK-p~--------------~i~~vls~~~~~~~~~~iiv 92 (267)
T KOG3124|consen 56 LEVLQASDVVFLSVK-PQ--------------VIESVLSEIKPKVSKGKIIV 92 (267)
T ss_pred HHHHhhccceeEeec-ch--------------hHHHHhhcCccccccceEEE
Confidence 678999999999983 43 36777778877777888887
No 477
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=90.09 E-value=0.84 Score=48.45 Aligned_cols=36 Identities=11% Similarity=0.018 Sum_probs=31.8
Q ss_pred CceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHH
Q psy11160 5 ISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67 (598)
Q Consensus 5 ~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 67 (598)
.++|.|.|. |++|..++..|++ .|++|++++++...
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~---------------------------~G~~V~~~~r~~~~ 40 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLE---------------------------LGAEVYGYSLDPPT 40 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHH---------------------------CCCEEEEEeCCCcc
Confidence 368999985 9999999999999 89999999987654
No 478
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=90.08 E-value=0.33 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.1
Q ss_pred CCceEEEECCChhHHHHHHHHHH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~ 26 (598)
+..+|+|||.|..|+.+|..|++
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~ 26 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ 26 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh
Confidence 34689999999999999999999
No 479
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=90.08 E-value=0.33 Score=54.05 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=31.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.++|+|||+|.-|+..|..|.+ .|++|++++++..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~---------------------------~G~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRR---------------------------EGHTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHh---------------------------cCCeEEEEecCCC
Confidence 4689999999999999999999 7899999998754
No 480
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=90.05 E-value=1.5 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=20.6
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
.++|+|+|+|.||..++..|.+
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~ 24 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAE 24 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHH
Confidence 4699999999999999999988
No 481
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.99 E-value=3.9 Score=40.91 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=34.9
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWN 72 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~ 72 (598)
+++.|.|. |.+|..++..|++ .|++|++.++++++.+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~---------------------------~G~~v~~~~r~~~~~~~~~ 48 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELAR---------------------------AGAAVAIADLNQDGANAVA 48 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHH---------------------------CCCeEEEEeCChHHHHHHH
Confidence 56888887 9999999999999 8999999999987766544
No 482
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=89.96 E-value=0.36 Score=52.27 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=30.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.+|.|||+|..|+.+|..|++ .|++|+++|+.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~---------------------------~G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHL---------------------------AGIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHh---------------------------cCCCEEEEEcCCc
Confidence 589999999999999999999 7899999998763
No 483
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=89.95 E-value=0.31 Score=52.02 Aligned_cols=33 Identities=18% Similarity=0.435 Sum_probs=29.2
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHH
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 66 (598)
.|+|||+|..|+.+|..|++ .|++|+++|+++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~---------------------------~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR---------------------------SGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc---------------------------CCCEEEEEeCCCc
Confidence 38999999999999999999 7888888888754
No 484
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=89.94 E-value=2.9 Score=45.30 Aligned_cols=79 Identities=13% Similarity=0.189 Sum_probs=57.0
Q ss_pred CCeEEEEe-ccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhccCC
Q psy11160 394 DKHIAILG-FAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472 (598)
Q Consensus 394 ~~~V~ilG-lafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~a 472 (598)
.++|+|+| +. ..+-.++..|.+.|.+|.+||+-. ..++.+++.++
T Consensus 98 ~~~I~IiGG~G----------lmG~slA~~l~~~G~~V~~~d~~~------------------------~~~~~~~~~~a 143 (374)
T PRK11199 98 LRPVVIVGGKG----------QLGRLFAKMLTLSGYQVRILEQDD------------------------WDRAEDILADA 143 (374)
T ss_pred cceEEEEcCCC----------hhhHHHHHHHHHCCCeEEEeCCCc------------------------chhHHHHHhcC
Confidence 47899998 62 466788999999999999999731 02355678899
Q ss_pred CEEEEEeeccchhhccHHHHHhccCCCcEEEecCCC
Q psy11160 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKI 508 (598)
Q Consensus 473 dalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i 508 (598)
|+||++++.....+. +..+.. +.+..+|+|...+
T Consensus 144 DlVilavP~~~~~~~-~~~l~~-l~~~~iv~Dv~Sv 177 (374)
T PRK11199 144 GMVIVSVPIHLTEEV-IARLPP-LPEDCILVDLTSV 177 (374)
T ss_pred CEEEEeCcHHHHHHH-HHHHhC-CCCCcEEEECCCc
Confidence 999999998764332 234444 4555689998654
No 485
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=89.94 E-value=1.2 Score=44.85 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.7
Q ss_pred CceEEEECCChhHHHHHHHHHH
Q psy11160 5 ISHICCIGAGYVGGPTCSVIAL 26 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~ 26 (598)
.++|+|.|.|.||..+|..|.+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~ 52 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHE 52 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
Confidence 4789999999999999999999
No 486
>PRK05993 short chain dehydrogenase; Provisional
Probab=89.84 E-value=0.79 Score=46.93 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=37.5
Q ss_pred CCceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHc
Q psy11160 4 TISHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNS 73 (598)
Q Consensus 4 ~~~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~ 73 (598)
+.++|.|.|+ |.+|..+|..|++ .|++|++.++++++.+.+..
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~---------------------------~G~~Vi~~~r~~~~~~~l~~ 46 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQS---------------------------DGWRVFATCRKEEDVAALEA 46 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHH---------------------------CCCEEEEEECCHHHHHHHHH
Confidence 3457888888 9999999999999 89999999999998887764
No 487
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=89.84 E-value=0.67 Score=49.56 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=18.4
Q ss_pred eEEEEC-CChhHHHHHHHHHH
Q psy11160 7 HICCIG-AGYVGGPTCSVIAL 26 (598)
Q Consensus 7 ~I~viG-~G~vG~~~a~~la~ 26 (598)
||+|+| .||+|..+...|++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~ 21 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEE 21 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHh
Confidence 689999 69999999999988
No 488
>PRK06153 hypothetical protein; Provisional
Probab=89.84 E-value=0.2 Score=54.07 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=32.7
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
.+|+|||||-+|+.++..|++ .|. +++++|-|.=....+++
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR---------------------------~GVgeI~LVD~D~Ve~SNLnR 218 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAK---------------------------TPVREIHLFDGDDFLQHNAFR 218 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHH---------------------------cCCCEEEEECCCEeccccccc
Confidence 589999999999999999999 553 88898877444444444
No 489
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.83 E-value=0.38 Score=54.00 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=30.4
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCC
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 64 (598)
+++|+|||+|.=|+..|..||+ +|++|.+++++
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~---------------------------~G~~V~VlE~~ 35 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLAR---------------------------AGLKVTVLEKN 35 (487)
T ss_pred CccEEEECCChhHHHHHHHHHh---------------------------CCCEEEEEEec
Confidence 4789999999999999999999 89999999864
No 490
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.82 E-value=0.37 Score=44.49 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=33.3
Q ss_pred eEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 7 ~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
||.|||+|-+|..+|..|+. .|+ +++++|.+.-....+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~---------------------------~Gv~~i~ivD~d~v~~~nl~r 41 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR---------------------------SGVGKITLIDFDTVELSNLNR 41 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH---------------------------CCCCEEEEEcCCCcCcchhhc
Confidence 68999999999999999999 776 79999987655555554
No 491
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.81 E-value=1.3 Score=48.05 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=33.3
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
.+|.|||+|-+|.+++..|+. .|. +++++|.+.-....+++
T Consensus 42 ~~VliiG~GglG~~v~~~La~---------------------------~Gvg~i~ivD~D~ve~sNL~R 83 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLAS---------------------------AGVGTITLIDDDTVDVSNIHR 83 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHH---------------------------cCCCEEEEEeCCEEccccccc
Confidence 689999999999999999999 664 89999987544444443
No 492
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.76 E-value=1.3 Score=45.95 Aligned_cols=72 Identities=22% Similarity=0.411 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
.+++|||- ..||.|+|..|.. .|..|+.+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~---------------------------~~AtVt~chs--------------------- 190 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLN---------------------------ENATVTICHS--------------------- 190 (278)
T ss_pred CEEEEECCCccchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
-|.++.+.+++||+||.+++.|---.. +.+++|.+||+-.+
T Consensus 191 ------------~T~~l~~~~~~ADIvIsAvGkp~~i~~--------------------~~ik~gavVIDvGi 231 (278)
T PRK14172 191 ------------KTKNLKEVCKKADILVVAIGRPKFIDE--------------------EYVKEGAIVIDVGT 231 (278)
T ss_pred ------------CCCCHHHHHhhCCEEEEcCCCcCccCH--------------------HHcCCCcEEEEeec
No 493
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=89.72 E-value=2 Score=44.72 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=36.6
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCc-eEEEEeCCHHHHHHHHc
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNI-QVTVVDKSEERIRQWNS 73 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~v~~~d~~~~~~~~~~~ 73 (598)
+++.|+|+|-.|.+++..|++ .|. +|++++|+.++.+.+.+
T Consensus 128 k~vlilGaGGaarAi~~aL~~---------------------------~g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVT---------------------------HGVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHH---------------------------CCCCEEEEEcCCHHHHHHHHH
Confidence 579999999999999999998 664 89999999999988764
No 494
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=89.68 E-value=1.2 Score=47.37 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++|+|||- ..||.|+|..|.. .|..|+++..
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~---------------------------~~ATVTicHs--------------------- 246 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQR---------------------------HDATVSTVHA--------------------- 246 (345)
T ss_pred CEEEEECCCccccHHHHHHHHH---------------------------CCCEEEEEcC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
.|.++.+.+++||+||.+++-|---.+ ..+++|.+||+-.+
T Consensus 247 ------------~T~nl~~~~~~ADIvIsAvGkp~~v~~--------------------d~vk~GavVIDVGi 287 (345)
T PLN02897 247 ------------FTKDPEQITRKADIVIAAAGIPNLVRG--------------------SWLKPGAVVIDVGT 287 (345)
T ss_pred ------------CCCCHHHHHhhCCEEEEccCCcCccCH--------------------HHcCCCCEEEEccc
No 495
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=89.58 E-value=6.4 Score=41.50 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=72.5
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcC-CeEEEeCCCCCh-hhhhhhhhcccccccCCCceEecCChhhh
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEG-AKLKIYDPKVEP-SQIIQDLKELDPELLDHNAVSILDDPYDT 468 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G-~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 468 (598)
.+.+++|+|+|. ...+..+++.|...| .+|.++++-... .++...+ +.. .....+..++
T Consensus 175 ~l~~~~V~ViGa----------G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-------g~~--~~~~~~~~~~ 235 (311)
T cd05213 175 NLKGKKVLVIGA----------GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-------GGN--AVPLDELLEL 235 (311)
T ss_pred CccCCEEEEECc----------HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-------CCe--EEeHHHHHHH
Confidence 457899999996 246777888888876 579999985432 2232221 211 1112356677
Q ss_pred ccCCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCCC--CChhhhhhccceeeeccchhh
Q psy11160 469 VKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKI--LNHDALLDIGFNVHTVIDLNE 529 (598)
Q Consensus 469 l~~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~i--~d~~~~~~~G~~y~~v~~iN~ 529 (598)
+..+|++|.+|..+.+.++....+.....++.+++|..+= ++++-.+-.|+.+..+-.+++
T Consensus 236 l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~ 298 (311)
T cd05213 236 LNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEE 298 (311)
T ss_pred HhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHH
Confidence 8899999999999987322222222222246799998852 444433334665555544433
No 496
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.57 E-value=1.3 Score=46.09 Aligned_cols=72 Identities=22% Similarity=0.388 Sum_probs=0.0
Q ss_pred ceEEEECC-ChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCCChH
Q psy11160 6 SHICCIGA-GYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLD 84 (598)
Q Consensus 6 ~~I~viG~-G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~~~~ 84 (598)
++++|||- ..||.|+|..|.. .|..|++...
T Consensus 160 K~vvViGrS~iVGkPla~lL~~---------------------------~~ATVtichs--------------------- 191 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLK---------------------------ENCSVTICHS--------------------- 191 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHH---------------------------CCCEEEEeCC---------------------
Q ss_pred HHHhhhcCCceEEecCHHHHhccCcEEEEecCCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCcEEEEecC
Q psy11160 85 EVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKST 157 (598)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~adviii~v~tp~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ivv~~ST 157 (598)
-|.++.+.+++||+||.+++.|.--.. ..+++|.+||+-++
T Consensus 192 ------------~T~~L~~~~~~ADIvV~AvGkp~~i~~--------------------~~vk~GavVIDvGi 232 (288)
T PRK14171 192 ------------KTHNLSSITSKADIVVAAIGSPLKLTA--------------------EYFNPESIVIDVGI 232 (288)
T ss_pred ------------CCCCHHHHHhhCCEEEEccCCCCccCH--------------------HHcCCCCEEEEeec
No 497
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=89.54 E-value=1.2 Score=49.65 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=56.7
Q ss_pred CceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCHHHHHHHHcCCCCCCCC-C-
Q psy11160 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEP-G- 82 (598)
Q Consensus 5 ~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~~~~e~-~- 82 (598)
-.+|+|||.|.-|+..|..|++ .||+|+++++.+.-.-.+.-|+..+..+ .
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~---------------------------~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i 175 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSR---------------------------AGHDVTVFERVALDGGLLLYGIPDFKLPKDI 175 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHh---------------------------CCCeEEEeCCcCCCceeEEecCchhhccchH
Confidence 3689999999999999999999 8999999998765544444443323222 1
Q ss_pred hHHHHhhhcCCceEE--------ecCHHHHhccCcEEEEecCCCC
Q psy11160 83 LDEVVKKTRDVNLFF--------STDIKSAIQKAQLIFISVNTPT 119 (598)
Q Consensus 83 ~~~~~~~~~~~~~~~--------~~~~~~~~~~adviii~v~tp~ 119 (598)
++..++.....+.++ .-+.++..++-|.|++++++..
T Consensus 176 ~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 176 LDRRLELLERSGVEFKLNVRVGRDITLEELLKEYDAVFLATGAGK 220 (457)
T ss_pred HHHHHHHHHHcCeEEEEcceECCcCCHHHHHHhhCEEEEeccccC
Confidence 111111111111211 3345667778899999998754
No 498
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.54 E-value=2.2 Score=44.55 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=58.0
Q ss_pred ccCCCeEEEEeccccCCCCcccCChHHHHHHHHHHcCCeEEEeCCCCChhhhhhhhhcccccccCCCceEecCChhhhcc
Q psy11160 391 TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470 (598)
Q Consensus 391 ~~~~~~V~ilGlafK~~t~D~R~Sp~l~li~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 470 (598)
++++++|.|+|=+ +.-..+++..|.++|++|.+.+-. ..|+.+.++
T Consensus 152 ~l~Gk~vvViGrS---------~iVGkPla~lL~~~~aTVtichs~-------------------------T~~l~~~~~ 197 (287)
T PRK14173 152 PLAGKEVVVVGRS---------NIVGKPLAALLLREDATVTLAHSK-------------------------TQDLPAVTR 197 (287)
T ss_pred CCCCCEEEEECCC---------CccHHHHHHHHHHCCCEEEEeCCC-------------------------CCCHHHHHh
Confidence 3579999999942 346788999999999999986542 235667889
Q ss_pred CCCEEEEEeeccchhhccHHHHHhccCCCcEEEecCC
Q psy11160 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRK 507 (598)
Q Consensus 471 ~adalii~t~~~~f~~ld~~~l~~~m~~~~iI~D~r~ 507 (598)
.||.+|.++..+.|-.-+| .++-.+++|.--
T Consensus 198 ~ADIvIsAvGkp~~i~~~~------vk~GavVIDVGi 228 (287)
T PRK14173 198 RADVLVVAVGRPHLITPEM------VRPGAVVVDVGI 228 (287)
T ss_pred hCCEEEEecCCcCccCHHH------cCCCCEEEEccC
Confidence 9999999999999865443 233458888653
No 499
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=89.52 E-value=0.41 Score=55.57 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=31.4
Q ss_pred CCceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 4 ~~~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
+..+|+|||.|..|+.+|..|++ .|++|+++++++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r---------------------------~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKK---------------------------KGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh---------------------------cCCeEEEEeccc
Confidence 34689999999999999999999 789999998865
No 500
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.48 E-value=0.39 Score=55.95 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=29.9
Q ss_pred ceEEEECCChhHHHHHHHHHHhCCCCcceeccccccCCCcccccccCCCCceEEEEeCCH
Q psy11160 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65 (598)
Q Consensus 6 ~~I~viG~G~vG~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 65 (598)
.+|+|||.|.+|+++|..|++ .|++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~---------------------------~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR---------------------------RGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH---------------------------CCCeEEEEecCC
Confidence 479999999999999999999 788999999863
Done!