RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11160
(598 letters)
>gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase.
Length = 473
Score = 556 bits (1434), Expect = 0.0
Identities = 221/370 (59%), Positives = 276/370 (74%), Gaps = 29/370 (7%)
Query: 182 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241
G+AADL Y E+AARMIA+++ +KIVVEKSTVPV+ AE+I +L N K + FQILSNP
Sbjct: 98 GKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKG-INFQILSNP 156
Query: 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSK 301
EFL+EGTA+ DLF DR+LIGG ETPEG A+++L VY HW+P + I+TTN WS+ELSK
Sbjct: 157 EFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSK 216
Query: 302 LAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKD 361
LAANAFLAQRISS+N++SA+CEATGADVS+V+ AVG DSRIG KFL ASVGFGGSCFQKD
Sbjct: 217 LAANAFLAQRISSVNAMSALCEATGADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKD 276
Query: 362 ILNLVYICECLNLPEVASYWQQL-----YE----------SLFNTVSDKHIAILGFAFKK 406
ILNLVYICEC LPEVA YW+Q+ Y+ S+FNTVS K IA+LGFAFKK
Sbjct: 277 ILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKK 336
Query: 407 NTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDH---------- 456
+TGDTRE+PAI VC+ LL + AKL IYDP+V QI +DL ++ DH
Sbjct: 337 DTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDL-SMNKFDWDHPRHLQPMSPT 395
Query: 457 --NAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDAL 514
VS++ D Y+ K H I + TEWDEF TLDY++IY+ M KPA++FDGR +L+H+ L
Sbjct: 396 AVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKL 455
Query: 515 LDIGFNVHTV 524
+IGF V+++
Sbjct: 456 REIGFIVYSI 465
Score = 240 bits (615), Expect = 8e-73
Identities = 96/174 (55%), Positives = 119/174 (68%), Gaps = 26/174 (14%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
ICCIGAGYVGGPT +VIALKCP+I+V VVD S R
Sbjct: 4 ICCIGAGYVGGPTMAVIALKCPDIEVVVVDI-------------------------SVPR 38
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I WNS++LPIYEPGLDEVVK+ R NLFFSTD++ + +A ++F+SVNTPTKT G G G
Sbjct: 39 IDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAG 98
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQ 181
+AADL Y E+AARMIA+++ +KIVVEKSTVPV+ AE+I +L N K + FQ
Sbjct: 99 KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKG-INFQ 151
Score = 125 bits (316), Expect = 6e-31
Identities = 45/70 (64%), Positives = 58/70 (82%)
Query: 522 HTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE 581
VI +N+YQK+RF +++SS+FNTVS K IA+LGFAFKK+TGDTRE+PAI VC+ LL +
Sbjct: 297 KQVIKMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD 356
Query: 582 GAKLKIYDPK 591
AKL IYDP+
Sbjct: 357 KAKLSIYDPQ 366
>gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope
biogenesis, outer membrane].
Length = 414
Score = 321 bits (824), Expect = e-104
Identities = 166/500 (33%), Positives = 232/500 (46%), Gaps = 108/500 (21%)
Query: 33 VTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTR- 91
+TV+ YVG + L +V VD E ++ N PIYEPGL+E++K+
Sbjct: 3 ITVIGTGYVG--LVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLA 60
Query: 92 DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKI 151
L F+TD + A++ A ++FI+V TP G +ADL YVEA A+ I EI +
Sbjct: 61 SGRLRFTTDYEEAVKDADVVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAV 115
Query: 152 VVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKS 211
VV KSTVPV E + A+I +N
Sbjct: 116 VVIKSTVPVGTTE------------------------------EVRAKIREENS------ 139
Query: 212 TVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYA 271
F++ SNPEFL EG+A+ D DRI+IG
Sbjct: 140 --------------------GKDFEVASNPEFLREGSAVYDFLYPDRIVIGVRS----ER 175
Query: 272 AIESLSWVYEHWIPRKH--ILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADV 329
A L +Y ++ R+ IL T+ +EL K AANAFLA +IS IN ++ +CE GADV
Sbjct: 176 AAAVLRELYAPFL-RQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADV 234
Query: 330 SEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESL- 388
+VA+ +GLD RIG FL A G+GGSCF KD L+ E L Y L E++
Sbjct: 235 KQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAE--ELG----YDPNLLEAVV 288
Query: 389 ----------------FNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKI 432
+ K IA+LG AFK NT D RESPA+ + + L +GA++
Sbjct: 289 EVNERRKDKLAEKILNHLGLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIA 348
Query: 433 YDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRI 492
YDP + + V + D + +K AIV+ TEWDEF LD++++
Sbjct: 349 YDPVAM-----------ENAFRNFPDVELESDAEEALKGADAIVINTEWDEFRDLDFEKL 397
Query: 493 YEGMMKPAYIFDGRKILNHD 512
+MK + DGR I + D
Sbjct: 398 ---LMKTPVVIDGRNIFDPD 414
Score = 71.8 bits (177), Expect = 2e-13
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 523 TVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEG 582
V+++NE +K + +EKI++ L + K IA+LG AFK NT D RESPA+ + + L +G
Sbjct: 286 AVVEVNERRKDKLAEKILNHL--GLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKG 343
Query: 583 AKLKIYDPKLM 593
A++ YDP M
Sbjct: 344 AEVIAYDPVAM 354
>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase. Enzymes
in this family catalyze the NAD-dependent
alcohol-to-acid oxidation of nucleotide-linked sugars.
Examples include UDP-glucose 6-dehydrogenase (1.1.1.22)
, GDP-mannose 6-dehydrogenase (1.1.1.132) ,
UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136),
UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase.
These enzymes are most often involved in the
biosynthesis of polysaccharides and are often found in
operons devoted to that purpose. All of these enzymes
contain three Pfam domains, pfam03721, pfam00984, and
pfam03720 for the N-terminal, central, and C-terminal
regions respectively.
Length = 409
Score = 293 bits (752), Expect = 1e-93
Identities = 156/514 (30%), Positives = 221/514 (42%), Gaps = 119/514 (23%)
Query: 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65
I IG GYVG P +++A VT VD +
Sbjct: 1 MKIAVIGLGYVGLPLAALLADL---------------------------GHDVTGVDIDQ 33
Query: 66 ERIRQWNSNKLPIYEPGLDEVVKKTRDVNLF-FSTDIKSAIQKAQLIFISVNTPTKTFGN 124
E++ + N K PIYEPGLDE++ K +TD + AI+ A +I I V TP K
Sbjct: 34 EKVDKLNKGKSPIYEPGLDELLAKALKAGRLRATTDYEEAIRDADVIIICVPTPLK---- 89
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
+ + DL YVE+AA IA+ VV +STVP E
Sbjct: 90 -EDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTE-------------------- 128
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
++ I + ++ K F + NPEFL
Sbjct: 129 ----------EVVKPI-----------------------LERSGLKLGEDFYLAYNPEFL 155
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
EG A+ DL + DRI+ G ET E A E+++ +Y I +L T+ ++E+ KLA
Sbjct: 156 REGNAVHDLLHPDRIVGG--ETEE---AGEAVAELYSP-IIDGPVLVTSIETAEMIKLAE 209
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
N F A +I+ N L+ +CEA G DV EV +A G D RIG FL G GG C KD L
Sbjct: 210 NTFRAVKIAFANELARICEALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLA 269
Query: 365 LVYICECL--NLPEVAS----------YWQQLYESLFNTVSDKHIAILGFAFKKNTGDTR 412
L+ + L N + + Y + + L + K + ILG AFK NT D R
Sbjct: 270 LIAKAKELGYNPELIEAAREINDSQPDYVVEKIKDLLGALKGKTVLILGLAFKPNTDDVR 329
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472
ESPA+ + L +GAK+K YDP V + + +DD + +K
Sbjct: 330 ESPALDIIELLKEKGAKVKAYDPLVPE--------------EEVKGLPSIDDLEEALKGA 375
Query: 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGR 506
A+V+ T+ EF LD ++I +MK + D R
Sbjct: 376 DALVILTDHSEFKDLDLEKIK-DLMKGKVVVDTR 408
Score = 76.5 bits (189), Expect = 7e-15
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ ++N+ Q EKI L + K + ILG AFK NT D RESPA+ + L
Sbjct: 284 IEAAREINDSQPDYVVEKIKDLLGA-LKGKTVLILGLAFKPNTDDVRESPALDIIELLKE 342
Query: 581 EGAKLKIYDPKLMS 594
+GAK+K YDP +
Sbjct: 343 KGAKVKAYDPLVPE 356
>gnl|CDD|217692 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase
family, NAD binding domain. The UDP-glucose/GDP-mannose
dehydrogenaseses are a small group of enzymes which
possesses the ability to catalyze the NAD-dependent
2-fold oxidation of an alcohol to an acid without the
release of an aldehyde intermediate.
Length = 188
Score = 183 bits (467), Expect = 9e-55
Identities = 81/268 (30%), Positives = 109/268 (40%), Gaps = 84/268 (31%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
I IG GYVG PT +A V VD ++ +
Sbjct: 3 IAVIGLGYVGLPTAVCLAEIG---------------------------HDVVGVDINQSK 35
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTR-DVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGK 126
I + N+ K+PIYEPGL+E++K L F+TD+ AI++A +IFI+V TP+K
Sbjct: 36 IDKLNNGKIPIYEPGLEELLKANVETGRLRFTTDVAEAIKEADVIFIAVPTPSKK----D 91
Query: 127 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAAD 186
G A DL YVE+AAR I + K+VV KSTVP E
Sbjct: 92 GGAPDLTYVESAARTIGPVLKKGKVVVVKSTVPPGTTE---------------------- 129
Query: 187 LKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSE 246
E ++ + + K V F + SNPEFL E
Sbjct: 130 ----EVVKPILEKRSGK--------------------------KFGVDFNVASNPEFLRE 159
Query: 247 GTAMTDLFNADRILIGGEETPEGYAAIE 274
G A+ DL N DR++IG E E
Sbjct: 160 GNALHDLLNPDRVVIGVTEECAEERLAE 187
>gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell
envelope biogenesis, outer membrane].
Length = 436
Score = 146 bits (370), Expect = 3e-38
Identities = 116/494 (23%), Positives = 194/494 (39%), Gaps = 97/494 (19%)
Query: 33 VTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRD 92
+ V+ YVG P + A +V VD +++++ + N + I EP LDEVVK+ +
Sbjct: 12 IGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVE 69
Query: 93 VNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV 152
+T +++ + I V TP K K R DL YVE+AAR IA + +V
Sbjct: 70 SGKLRATTDPEELKECDVFIICVPTPLK-----KYREPDLSYVESAARSIAPVLKKGDLV 124
Query: 153 VEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKST 212
+ +ST P E + + + E +
Sbjct: 125 ILESTTPPGTTEEV---------------------------VKPLLEERSG--------- 148
Query: 213 VPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAA 272
LK + + +PE + G + +L N ++ IGG TP+
Sbjct: 149 ------------LKFGEDFYLAY----SPERVLPGNVLKELVNNPKV-IGGV-TPK---C 187
Query: 273 IESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEV 332
E + +Y+ + +T+ ++E+ KL N F I+ N L+ +C A G DV EV
Sbjct: 188 AELAAALYKTIVEGVIPVTSAR-TAEMVKLTENTFRDVNIALANELALICNAMGIDVWEV 246
Query: 333 AKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLP----------------E 376
+A R+ G GG C D L + LP
Sbjct: 247 IEAANTKPRV--NIFYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLIRTAREINDSMPRH 304
Query: 377 VASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPK 436
V ++ +S I +LG A+K + D RESPA+ + L G ++ +YDP
Sbjct: 305 VVDRVKEALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPY 364
Query: 437 VEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGM 496
V+ +D + + +L+ +K+ A+V+ T+ EF +DY+ I +
Sbjct: 365 VKELPTREDGEGVTLAILEE-----------ALKDADAVVIATDHSEFKEIDYEAIGK-- 411
Query: 497 MKPAYIFDGRKILN 510
+ I D R +
Sbjct: 412 -EAKVIVDTRNVWK 424
Score = 56.1 bits (136), Expect = 3e-08
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 547 VSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDP 590
+S I +LG A+K + D RESPA+ + L G ++ +YDP
Sbjct: 320 LSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDP 363
>gnl|CDD|201536 pfam00984, UDPG_MGDP_dh, UDP-glucose/GDP-mannose dehydrogenase
family, central domain. The UDP-glucose/GDP-mannose
dehydrogenaseses are a small group of enzymes which
possesses the ability to catalyze the NAD-dependent
2-fold oxidation of an alcohol to an acid without the
release of an aldehyde intermediate.
Length = 96
Score = 131 bits (333), Expect = 7e-37
Identities = 50/84 (59%), Positives = 57/84 (67%)
Query: 294 TWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGF 353
++E+ K AANAFLA +IS IN L+ +CEA GADVSEVA+A GLD RIG KFL GF
Sbjct: 1 LKTAEMIKYAANAFLATKISFINELANICEAVGADVSEVARAAGLDPRIGRKFLNPGPGF 60
Query: 354 GGSCFQKDILNLVYICECLNLPEV 377
GGSCF KD L Y E L LP
Sbjct: 61 GGSCFPKDPYALTYKAEELGLPAR 84
>gnl|CDD|217691 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase
family, UDP binding domain. The UDP-glucose/GDP-mannose
dehydrogenaseses are a small group of enzymes which
possesses the ability to catalyze the NAD-dependent
2-fold oxidation of an alcohol to an acid without the
release of an aldehyde intermediate.
Length = 103
Score = 128 bits (325), Expect = 1e-35
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 10/113 (8%)
Query: 398 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHN 457
A+LG AFK NT D RESPA+ + LL EGA++ +YDP V I E L +
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEEGAEVVVYDPYVPEEAI---------EALGED 51
Query: 458 AVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN 510
V+++DD + +K AIV+ T+ DEF +LD+ +I + +MKP +FDGR +L+
Sbjct: 52 GVTLVDDLEEALKGADAIVILTDHDEFRSLDWAKIKK-LMKPPVVFDGRNVLD 103
Score = 69.9 bits (172), Expect = 1e-14
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 553 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMS 594
A+LG AFK NT D RESPA+ + LL EGA++ +YDP +
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEEGAEVVVYDPYVPE 42
>gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain. The
UDP-glucose/GDP-mannose dehydrogenases are a small group
of enzymes which possesses the ability to catalyse the
NAD-dependent 2-fold oxidation of an alcohol to an acid
without the release of an aldehyde intermediate.
Length = 99
Score = 115 bits (291), Expect = 6e-31
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 14/113 (12%)
Query: 398 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHN 457
A+LG AFK NT D RESPA+ + LL GA++ +YDP E
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEAGAEVVVYDPYAM-------------EEAREY 47
Query: 458 AVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN 510
++ + D + +K A+V+ TE DEF +LD + + + +MK + DGR IL+
Sbjct: 48 GLTYVSDLEEALKGADAVVIATEHDEFRSLDPEELKD-LMKKPVVVDGRNILD 99
Score = 67.5 bits (166), Expect = 7e-14
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 553 AILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLM 593
A+LG AFK NT D RESPA+ + LL GA++ +YDP M
Sbjct: 1 AVLGLAFKPNTDDLRESPALDIIEELLEAGAEVVVYDPYAM 41
>gnl|CDD|182940 PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase;
Provisional.
Length = 415
Score = 85.8 bits (213), Expect = 8e-18
Identities = 110/413 (26%), Positives = 162/413 (39%), Gaps = 91/413 (22%)
Query: 33 VTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRD 92
++V+ Y+G PT + A + QV VD ++ + N ++ I EP LD VVK +
Sbjct: 6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVE 63
Query: 93 VNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIV 152
+T + + A I+V TP K DL YVEAAA+ IA + +V
Sbjct: 64 GGYLRAT---TTPEPADAFLIAVPTPFK-----GDHEPDLTYVEAAAKSIAPVLKKGDLV 115
Query: 153 VEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKST 212
+ +ST PV A E + L A AR T
Sbjct: 116 ILESTSPVGATEQMAEWL---------------------AEAR-------------PDLT 141
Query: 213 VPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAA 272
P +A E I PE + G M +L DR+ IGG TP A
Sbjct: 142 FPQQAGE------------QADINIAYCPERVLPGQVMVELIKNDRV-IGG-MTPVCSAR 187
Query: 273 IESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEV 332
L Y+ ++ + ++ TN+ ++E+ KL N+F I+ N LS +C G +V E+
Sbjct: 188 ASEL---YKIFLEGECVV-TNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWEL 243
Query: 333 AKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVAS------------- 379
+ R+ LQ G GG C D +V P+ A
Sbjct: 244 IRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVAQN-----PQQARLIRTAREVNDGKP 296
Query: 380 YW------QQLYESLFNT---VSDKHIAILGFAFKKNTGDTRESPAIHVCRTL 423
+W + + L T S+ IA G AFK N D RESPA+ + +
Sbjct: 297 HWVIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI 349
Score = 39.2 bits (92), Expect = 0.005
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 548 SDKHIAILGFAFKKNTGDTRESPAIHVCRTL 578
S+ IA G AFK N D RESPA+ + +
Sbjct: 319 SEVKIACFGLAFKPNIDDLRESPAMEIAELI 349
>gnl|CDD|185017 PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.
Length = 388
Score = 81.2 bits (200), Expect = 2e-16
Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Query: 190 VEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTA 249
VE+ + + EI +V+ KSTVPV A HK I+ +PEFL EG A
Sbjct: 97 VESVIKDVVEINPYAVMVI-KSTVPV-------GFTAAMHKKYRTENIIFSPEFLREGKA 148
Query: 250 MTDLFNADRILIGGE-ETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFL 308
+ D + RI+IG E E +AA+ + ++ IP L T++ +E KL AN +L
Sbjct: 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQN-IP---TLFTDSTEAEAIKLFANTYL 204
Query: 309 AQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILNLV 366
A R++ N L + E+ G + ++ + V LD RIG + S G+GG C KD L+
Sbjct: 205 AMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL 262
>gnl|CDD|185104 PRK15182, PRK15182, Vi polysaccharide biosynthesis protein TviB;
Provisional.
Length = 425
Score = 50.8 bits (121), Expect = 1e-06
Identities = 71/286 (24%), Positives = 117/286 (40%), Gaps = 41/286 (14%)
Query: 183 RAADLKYVEAAARMIAEIATDNKIVVEKSTV-PVRAAESIMNVLK--ANHKTNVQFQILS 239
+ DL + A+ + + IVV +STV P E + +L + N F +
Sbjct: 92 KQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGY 151
Query: 240 NPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSEL 299
+PE ++ G L N +I G E + VY+ I++ T+ +E
Sbjct: 152 SPERINPGDKKHRLTNIKKITSGSTAQ-----IAELIDEVYQQ------IISAGTYKAES 200
Query: 300 SKLAANAFL---AQR---ISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGF 353
K+A A + QR I+ +N L+ + D V +A G FL G
Sbjct: 201 IKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK----WNFLPFRPGL 256
Query: 354 -GGSCFQKDILNLVYICECLNL-PEVASYWQQLYESLFNTVSDKHIA------------- 398
GG C D L + + + PE+ ++L +++ N VS++ I
Sbjct: 257 VGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNMGNYVSEQLIKAMIKKGINVEGSS 316
Query: 399 --ILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQI 442
ILGF FK+N D R + I V + L K+ I+DP V+ ++
Sbjct: 317 VLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEV 362
Score = 37.7 bits (87), Expect = 0.017
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 527 LNEYQKTRFSEKIISSLFN---TVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGA 583
LN+ SE++I ++ V + ILGF FK+N D R + I V + L
Sbjct: 289 LNDNMGNYVSEQLIKAMIKKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSC 348
Query: 584 KLKIYDP 590
K+ I+DP
Sbjct: 349 KVDIFDP 355
>gnl|CDD|176655 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease domain of
Caenorhabditis elegans mut-7 and similar proteins. The
mut-7 subfamily is composed of Caenorhabditis elegans
mut-7 and similar proteins found in plants and
metazoans. Mut-7 is implicated in posttranscriptional
gene silencing. It contains a DEDDy-type DnaQ-like 3'-5'
exonuclease domain possessing three conserved sequence
motifs, termed ExoI, ExoII and ExoIII, with a specific
YX(3)D pattern at ExoIII. These motifs are clustered
around the active site and contain four conserved acidic
residues that serve as ligands for the two metal ions
required for catalysis.
Length = 193
Score = 32.7 bits (75), Expect = 0.36
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 366 VYICECLNLPEVASY-WQQLYESLFNTVSDKHIAILGFAFK 405
V++ + L L + S W +L + LF D + LGF FK
Sbjct: 54 VFLLDLLALENLESEDWDRLLKRLFE---DPDVLKLGFGFK 91
>gnl|CDD|223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy
production and conversion].
Length = 598
Score = 30.8 bits (70), Expect = 2.6
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 11/124 (8%)
Query: 172 ANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIV---VEKSTVPVRAAESIMNVLKAN 228
A+ K V G A +Y + ++ + D +V S P AE+I+
Sbjct: 345 ASVKNPVDLTGDADAERYKKTLEILLRDENVDALLVIVLPPASADPEETAEAIIRATAKK 404
Query: 229 HKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH 288
V ++S+ S A L I TPE A+++LS + + K
Sbjct: 405 RGKPV---VVSSMGGESSEKA-RRLLEEAGI--PTYPTPE--RAVKALSALARYRRWLKK 456
Query: 289 ILTT 292
+ T
Sbjct: 457 LRET 460
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 30.0 bits (68), Expect = 2.6
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 11 IGAGYVGGPTCSV-IALKCPNIQVTVVDKRYVGG 43
IG G VG S L + VT++++ +
Sbjct: 5 IGGGIVG---LSTAYELARRGLSVTLLERGDLAS 35
>gnl|CDD|173495 PTZ00256, PTZ00256, glutathione peroxidase; Provisional.
Length = 183
Score = 29.3 bits (66), Expect = 3.7
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 404 FKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKEL 449
F+ NT + R+ P + +G +K + PKV P+++IQD+++L
Sbjct: 135 FQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKL 180
>gnl|CDD|200138 TIGR01879, hydantase, amidase, hydantoinase/carbamoylase family.
Enzymes in this subfamily hydrolize the amide bonds of
compounds containing carbamoyl groups or hydantoin
rings. These enzymes are members of the broader family
of amidases represented by pfam01546.
Length = 400
Score = 29.8 bits (67), Expect = 5.1
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 271 AAIESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRI----SSINSLSAVCEATG 326
A IE + + E ++ H + ++ E R ++ + +C+A G
Sbjct: 93 AGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLANPEDVRNICDAKG 152
Query: 327 ADVSEVAKAVGLD 339
+E KA G D
Sbjct: 153 ISFAEAMKACGPD 165
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 29.6 bits (67), Expect = 5.7
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 25/89 (28%)
Query: 258 RILIGGEETPEGYAAIESLSWVYEH--WIPRKHILTTNTWSSELSKLAANAFLAQRISSI 315
I + G + A SW + W+P+ L T +A N LA+
Sbjct: 378 SIAVNGVPLADADAD----SW-RDQIAWVPQHPFLFAGT-------IAENIRLARP---- 421
Query: 316 NSLSAVCEATGADVSEVAKAVGLDSRIGA 344
+A+ A++ E + GLD + A
Sbjct: 422 -------DASDAEIREALERAGLDEFVAA 443
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 29.6 bits (67), Expect = 6.0
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 125 GKGRAA---DLKYVEAAARMIAEI-ATDNKIVVEKSTVPVRAAESIMNVLKANH 174
G GR + D+++ EAA M A++ + N + V + P++A + L NH
Sbjct: 268 GVGRDSIQGDIRFAEAARAMGAQVTSGPNWLEVRRGAWPLKAID-----LDCNH 316
Score = 29.2 bits (66), Expect = 7.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 181 QGRAADLKYVEAAARMIAEI-ATDNKIVVEKSTVPVRAAESIMNVLKANH 229
QG D+++ EAA M A++ + N + V + P++A + L NH
Sbjct: 275 QG---DIRFAEAARAMGAQVTSGPNWLEVRRGAWPLKAID-----LDCNH 316
>gnl|CDD|182640 PRK10676, PRK10676, DNA-binding transcriptional regulator ModE;
Provisional.
Length = 263
Score = 29.2 bits (66), Expect = 6.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 244 LSEGTAMTDLFNADRILI 261
L +G A+T FNADR++I
Sbjct: 242 LQQGDAVTAYFNADRVII 259
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In
many organisms, this protein is fused to the CbiE
subunit. The fused protein, when found in organisms
catalyzing the oxidative version of the cobalamin
biosynthesis pathway, is called CobL [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 124
Score = 28.1 bits (63), Expect = 6.3
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 41 VGGPTCSV---IALKCPNIQVTVVDKSEERIRQWNSN 74
+G T SV A PN +V ++++ E + N
Sbjct: 26 IGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERN 62
>gnl|CDD|183173 PRK11519, PRK11519, tyrosine kinase; Provisional.
Length = 719
Score = 29.0 bits (65), Expect = 8.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 506 RKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAI 554
R I + L + G +V+ I L+E+QK R S K I + + +A+
Sbjct: 451 RGIESPQVLEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAV 499
>gnl|CDD|176525 cd08583, PI-PLCc_GDPD_SF_unchar1, Uncharacterized hypothetical
proteins similar to the catalytic domains of
Phosphoinositide-specific phospholipaseand
Glycerophosphodiester phosphodiesterases. This
subfamily corresponds to a group of uncharacterized
hypothetical proteins similar to the catalytic domains
of Phosphoinositide-specific phospholipase C (PI-PLC),
and glycerophosphodiester phosphodiesterases (GP-GDE),
and also sphingomyelinases D (SMases D) and similar
proteins. They hydrolyze the 3'-5' phosphodiester bonds
in different substrates, utilizing a similar mechanism
of general base and acid catalysis involving two
conserved histidine residues.
Length = 237
Score = 28.4 bits (64), Expect = 8.2
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 37/125 (29%)
Query: 431 KIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDP-YDTVKNTHA--------------- 474
D K I+++ KE+DP+LLD I ++ Y+ + + +
Sbjct: 111 DDNDIKKLYEYIVKEAKEVDPDLLDRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQDSIR 170
Query: 475 ----IVVCTEWD-EFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFN--VHTVIDL 527
I C E + VT+ + + +++ L G V+T+ DL
Sbjct: 171 LDEIIAFCYENGIKAVTISKNYVNDKLIE--------------KLNKAGIYVYVYTINDL 216
Query: 528 NEYQK 532
+ Q+
Sbjct: 217 KDAQE 221
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 28.8 bits (65), Expect = 9.2
Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 36/170 (21%)
Query: 183 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242
A L ++ +AE + ++V VPV A E ++ LK
Sbjct: 43 LAVSLGVIDRGEEDLAEAVSGADVIV--LAVPVLAMEKVLADLKP--------------- 85
Query: 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSK- 301
LSE +TD+ + ++ AA + ++P I SE S
Sbjct: 86 LLSEHAIVTDVGSTKGNVVD--------AARAVFGELPAGFVPGHPIA-----GSEKSGV 132
Query: 302 LAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASV 351
AANA L + I + D + +A+ L +GA L V
Sbjct: 133 HAANADLFRNHKVI-----LTPLAETDPAALARVDRLWRAVGADVLHMDV 177
>gnl|CDD|227439 COG5108, RPO41, Mitochondrial DNA-directed RNA polymerase
[Transcription].
Length = 1117
Score = 28.8 bits (64), Expect = 9.4
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 59 TVVDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118
T+V +SE Q + L +P ++ V K+ ++N S+ S++ + + ++
Sbjct: 180 TIVGESENGKDQNGDSSLKEKQPDVETTVTKSANLNALRSS--LSSLLTESIDMLPLDET 237
Query: 119 TKTFGNGKG 127
+ F G
Sbjct: 238 NELFLAAHG 246
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0832 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,070,030
Number of extensions: 2951855
Number of successful extensions: 2800
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2763
Number of HSP's successfully gapped: 54
Length of query: 598
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 496
Effective length of database: 6,413,494
Effective search space: 3181093024
Effective search space used: 3181093024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.5 bits)