RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11160
(598 letters)
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote
structure initiative, NEW YORK SGX research center for
STRU genomics; 1.88A {Caenorhabditis elegans}
Length = 481
Score = 669 bits (1728), Expect = 0.0
Identities = 284/539 (52%), Positives = 344/539 (63%), Gaps = 93/539 (17%)
Query: 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV 60
+ +S + C+GAGYVGGPTC++IA KCP+I VTVVD
Sbjct: 5 VFGKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDM---------------------- 42
Query: 61 VDKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTK 120
+ +I +WNS+KLPIYEPGLDE+V R NLFFS+DI AI +A LIFISVNTPTK
Sbjct: 43 ---NTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTK 99
Query: 121 TFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 180
+G GKG A DLKYVE+ +R IA+ A KIVVEKSTVPV+AAESI +L+ K N
Sbjct: 100 MYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNE-- 157
Query: 181 QGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSN 240
N++FQ+LSN
Sbjct: 158 ---------------------------------------------------NLKFQVLSN 166
Query: 241 PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELS 300
PEFL+EGTAM DL N DR+LIGGE +PEG A+ L +YE+W+PR I+TTNTWSSELS
Sbjct: 167 PEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELS 226
Query: 301 KLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQK 360
KL ANAFLAQRISSINS+SAVCEATGA++SEVA AVG D+RIG+KFLQASVGFGGSCFQK
Sbjct: 227 KLVANAFLAQRISSINSISAVCEATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQK 286
Query: 361 DILNLVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAILGFAFK 405
D+L+LVY+CE LNLP+VA YWQ + LFNTV+DK IAI GFAFK
Sbjct: 287 DVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFK 346
Query: 406 KNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDP 465
KNTGDTRES AIHV + L+ E AKL +YDPKV+ SQ++ DL + +++ DP
Sbjct: 347 KNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDP 406
Query: 466 YDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTV 524
Y + HAIVV TEWDEFV L+Y +I+ M PA IFDGR IL+ AL +IGF +
Sbjct: 407 YAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAI 465
Score = 125 bits (316), Expect = 5e-31
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
VI++N +Q+ RF++KII+ LFNTV+DK IAI GFAFKKNTGDTRES AIHV + L+
Sbjct: 307 WQGVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLME 366
Query: 581 EGAKLKIYDPKLM 593
E AKL +YDPK+
Sbjct: 367 EHAKLSVYDPKVQ 379
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S
genomics consortium, SGC, oxidoreductase; HET: NAD UPG;
2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Length = 467
Score = 530 bits (1368), Expect = 0.0
Identities = 229/369 (62%), Positives = 278/369 (75%), Gaps = 19/369 (5%)
Query: 175 KTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQ 234
KT +GRAADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+
Sbjct: 95 KTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLN 154
Query: 235 FQILSNPEFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNT 294
Q+LSNPEFL+EGTA+ DL N DR+LIGG+ETPEG A+++L VYEHW+PR+ ILTTNT
Sbjct: 155 LQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNT 214
Query: 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFG 354
WSSELSKLAANAFLAQRISSINS+SA+CEATGADV EVA A+G+D RIG KFL+ASVGFG
Sbjct: 215 WSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQRIGNKFLKASVGFG 274
Query: 355 GSCFQKDILNLVYICECLNLPEVASYWQQ---------------LYESLFNTVSDKHIAI 399
GSCFQKD+LNLVY+CE LNLPEVA YWQQ + +SLFNTV+DK IAI
Sbjct: 275 GSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAI 334
Query: 400 LGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNA- 458
LGFAFKK+TGDTRES +I++ + L+ EGA L IYDPKV QI+ DL D +
Sbjct: 335 LGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSR 394
Query: 459 -VSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILN--HDALL 515
V+I DPY+ HA+V+CTEWD F LDY+RI++ M+KPA+IFDGR++L+ H+ L
Sbjct: 395 LVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQ 454
Query: 516 DIGFNVHTV 524
IGF + T+
Sbjct: 455 TIGFQIETI 463
Score = 239 bits (612), Expect = 1e-72
Identities = 103/180 (57%), Positives = 117/180 (65%), Gaps = 25/180 (13%)
Query: 2 VQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVV 61
+ I ICCIGAGYVGGPTCSVIA CP I+VTVVD
Sbjct: 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDV----------------------- 38
Query: 62 DKSEERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKT 121
+E RI WNS LPIYEPGL EVV+ R NLFFST+I AI++A L+FISVNTPTKT
Sbjct: 39 --NESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKT 96
Query: 122 FGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQ 181
+G GKGRAADLKY+EA AR I + + KIV EKSTVPVRAAESI + AN K N+ Q
Sbjct: 97 YGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQ 156
Score = 125 bits (316), Expect = 6e-31
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
VID+N+YQ+ RF+ +II SLFNTV+DK IAILGFAFKK+TGDTRES +I++ + L+
Sbjct: 301 WQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMD 360
Query: 581 EGAKLKIYDPKLM 593
EGA L IYDPK+
Sbjct: 361 EGAHLHIYDPKVP 373
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate
synthesis, exopolysaccharide, C fibrosis; HET: UGA;
1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Length = 478
Score = 385 bits (992), Expect = e-129
Identities = 153/534 (28%), Positives = 230/534 (43%), Gaps = 102/534 (19%)
Query: 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66
++ IG+G VG T + +A +G V +D +
Sbjct: 10 NLTIIGSGSVGLVTGACLA--------------DIG-------------HDVFCLDVDQA 42
Query: 67 RIRQWNSNKLPIYEPGLDEVVKKTRDVN-LFFSTDIKSAIQKAQLIFISVNTPTKTFGNG 125
+I N+ +PI+EPGL EV+ + R L FSTDI++A+ + FI+V TP G
Sbjct: 43 KIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-- 100
Query: 126 KGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAA 185
+ADL+YV AAAR I T K++V+KSTVPV AE +
Sbjct: 101 ---SADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERV------------------- 138
Query: 186 DLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245
+ + A + F ++SNPEFL
Sbjct: 139 ---------------------------------RAAVAEELAKRGGDQMFSVVSNPEFLK 165
Query: 246 EGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH--ILTTNTWSSELSKLA 303
EG A+ D DRI+IG ++ G A E + +Y + R H L + S+E +K A
Sbjct: 166 EGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFN-RNHERTLYMDVRSAEFTKYA 224
Query: 304 ANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDIL 363
ANA LA RIS +N L+ + + GAD+ V + +G D RIG FL A G+GGSCF KD+
Sbjct: 225 ANAMLATRISFMNELANLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVE 284
Query: 364 NLVYICECLNLP--------EV-----ASYWQQLYESLFNTVSDKHIAILGFAFKKNTGD 410
L+ + V ++ ++ + AI G AFK NT D
Sbjct: 285 ALIRTADEHGQSLQILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDD 344
Query: 411 TRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470
RE+P+ + LL GA++ YDP + +L +S +DD +
Sbjct: 345 MREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAAR 404
Query: 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTV 524
+ A+V+ TEW F + D+ + P IFDGR + + + + G H +
Sbjct: 405 DADALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSEQGIEYHPI 457
Score = 88.0 bits (219), Expect = 1e-18
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ V +N QK ++KI++ ++ + AI G AFK NT D RE+P+ + LL
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLS 359
Query: 581 EGAKLKIYDPKLM 593
GA++ YDP
Sbjct: 360 RGARIAAYDPVAQ 372
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family;
structural genomics, oxidoreductase, PSI-2; HET: UGA;
1.70A {Porphyromonas gingivalis}
Length = 450
Score = 373 bits (961), Expect = e-124
Identities = 145/534 (27%), Positives = 227/534 (42%), Gaps = 118/534 (22%)
Query: 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66
I +G GYVG + + A +G V +D
Sbjct: 4 DIAVVGIGYVGLVSATCFA--------------ELG-------------ANVRCIDTDRN 36
Query: 67 RIRQWNSNKLPIYEPGLDEVVKKTRDVN-LFFSTDIKSAIQKAQLIFISVNTPTKTFGNG 125
+I Q NS +PIYEPGL++++ + L F T+I+ A+ +A +IFI+V TP G
Sbjct: 37 KIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDG-- 94
Query: 126 KGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAA 185
+AD+ YV AAR I + ++V KSTVPV + I
Sbjct: 95 ---SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLI------------------- 132
Query: 186 DLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLS 245
+ + + F I SNPEFL
Sbjct: 133 ---------------------------------RKAIQEELDKREVLIDFDIASNPEFLK 159
Query: 246 EGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH--ILTTNTWSSELSKLA 303
EG A+ D DR+++G + A E ++ +Y+ + + +L + S+E++K A
Sbjct: 160 EGNAIDDFMKPDRVVVGVDSD----RARELITSLYKPML-LNNFRVLFMDIASAEMTKYA 214
Query: 304 ANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDIL 363
ANA LA RIS +N ++ +CE GADVS V +G DSRIG+KFL G+GGSCF KD+
Sbjct: 215 ANAMLATRISFMNDVANLCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVK 274
Query: 364 NLVYICECLNLP--------EV-----ASYWQQLYESLFNTVSDKHIAILGFAFKKNTGD 410
L+ E V + + + V + +AI G +FK T D
Sbjct: 275 ALIRTAEDNGYRMEVLEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDD 334
Query: 411 TRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVK 470
RE+P++ + LL G ++++YDP +++ ++ + V D YD V+
Sbjct: 335 MREAPSLVLIEKLLEVGCRVRVYDPVA-----MKEAQKRLG-----DKVEYTTDMYDAVR 384
Query: 471 NTHAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTV 524
A+ TEW EF D+ + + M + DGR + + D F + +
Sbjct: 385 GAEALFHVTEWKEFRMPDWSALSQAMAAS-LVIDGRNVY--ELPADSDFTLLNI 435
Score = 88.3 bits (220), Expect = 8e-19
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ V +NE QK+ +K + V + +AI G +FK T D RE+P++ + LL
Sbjct: 290 LEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLE 349
Query: 581 EGAKLKIYDPKLM 593
G ++++YDP M
Sbjct: 350 VGCRVRVYDPVAM 362
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped
dimer, enzyme complex with COFA product, oxidoreductase;
HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP:
a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Length = 436
Score = 358 bits (922), Expect = e-119
Identities = 113/522 (21%), Positives = 195/522 (37%), Gaps = 109/522 (20%)
Query: 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEE 66
I G GYVG ++ G +V VD S
Sbjct: 2 RISIFGLGYVGAVCAGCLS--------------ARG-------------HEVIGVDVSST 34
Query: 67 RIRQWNSNKLPIYEPGLDEVVKKTRDVN-LFFSTDIKSAIQKAQLIFISVNTPTKTFGNG 125
+I N K PI EPGL+ ++++ R L +TD K A+ + + FI V TP+K G+
Sbjct: 35 KIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGD- 93
Query: 126 KGRAADLKYVEAAARMIAEI---ATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQG 182
DL Y+E R I ++ VV +STV +++ L +
Sbjct: 94 ----LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDC-------- 141
Query: 183 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPE 242
+ K V F + +NPE
Sbjct: 142 --------------------------------------------SGKKAGVDFGVGTNPE 157
Query: 243 FLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKL 302
FL E TA+ D +IG + + L +Y + I+ +E+ K
Sbjct: 158 FLRESTAIKDYDFPPMTVIGELDK----QTGDLLEEIYRE-LDAP-IIRKTVEVAEMIKY 211
Query: 303 AANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIG--AKFLQASVGFGGSCFQK 360
N + A +++ N + + +A G D EV + D ++ +++ FGGSC K
Sbjct: 212 TCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPK 271
Query: 361 DILNLVYICECLNLP-----EVASYWQQLYESLFNTVSD---KHIAILGFAFKKNTGDTR 412
D+ L Y L++ + + F+ ++ + + +LG +FK T D R
Sbjct: 272 DVRALTYRASQLDVEHPMLGSLMRSNSNQVQKAFDLITSHDTRKVGLLGLSFKAGTDDLR 331
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNT 472
ESP + + L+ +G +L+I+D VE +++ KE + H + ++ D + V ++
Sbjct: 332 ESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS 391
Query: 473 HAIVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDAL 514
+V+ + FV L K + D + H
Sbjct: 392 DVLVLGNGDELFVDLVNKT-----PSGKKLVDLVGFMPHTTT 428
Score = 80.3 bits (199), Expect = 3e-16
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLY 580
+ +++ N Q + + I S + + +LG +FK T D RESP + + L+
Sbjct: 290 LGSLMRSNSNQVQKAFDLITS-----HDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIG 344
Query: 581 EGAKLKIYDPKLMSR 595
+G +L+I+D +
Sbjct: 345 KGYELRIFDRNVEYA 359
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 253 bits (649), Expect = 7e-78
Identities = 103/549 (18%), Positives = 179/549 (32%), Gaps = 127/549 (23%)
Query: 5 ISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKS 64
I I +G GYVG P + A +V + S
Sbjct: 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRN---------------------SKSS 56
Query: 65 EERIRQWNSNKLPIY--EPGLDEVVKKTRDV-NLFFSTDIKSAIQKAQLIFISVNTPTKT 121
+I N + P+ EPGL+E++ K + D S I + + +++ TP
Sbjct: 57 GYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDF-SRISELDAVTLAIQTPFAN 115
Query: 122 FGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQ 181
+ + D + R + + +VV +ST+ E +
Sbjct: 116 PKDLE---PDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMA-------------- 158
Query: 182 GRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNP 241
+ ES + K F + P
Sbjct: 159 -------------------------------KQILEEESGL-------KAGEDFALAHAP 180
Query: 242 EFLSEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSK 301
E + G + ++ DRI +GG + + +Y + ++ + ++E++K
Sbjct: 181 ERVMVGRLLKNIREHDRI-VGGI-DEA---STKRAVELYSPVLTVGQVIPMSATAAEVTK 235
Query: 302 LAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGL--DSRIGAKFLQASVGFGGSCFQ 359
A N F +I++IN L+ CEA G +V +V V I L G GG C
Sbjct: 236 TAENTFRDLQIAAINQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLT 295
Query: 360 KDILNLVYICECLNLPEVASYW--------------------QQLYESLFN---TVSDKH 396
KD +L + +L +
Sbjct: 296 KDTYHLERGVKIGRGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSK 355
Query: 397 IAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDH 456
+A+LG+AF K++ D R +P+ L GA + ++DP V ++
Sbjct: 356 VAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVV----------------NY 399
Query: 457 NAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGM-MKPAYIFDGRKILNHDALL 515
V I D+ + V+N AIVV + +L + I DGR ++ D +
Sbjct: 400 PGVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNVIEPDEFI 459
Query: 516 DIGFNVHTV 524
GF +
Sbjct: 460 GKGFVYKGI 468
Score = 70.8 bits (174), Expect = 4e-13
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFN---TVSDKHIAILGFAFKKNTGDTRESPAIHVCRT 577
+N++ +++L + +A+LG+AF K++ D R +P+
Sbjct: 322 YVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDL 381
Query: 578 LLYEGAKLKIYDPKLMS 594
L GA + ++DP +++
Sbjct: 382 CLKAGASVMVHDPYVVN 398
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 232 bits (595), Expect = 9e-71
Identities = 68/324 (20%), Positives = 125/324 (38%), Gaps = 41/324 (12%)
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
D ++VE + + + + ++ KST+P+ + + + I+ +PEFL
Sbjct: 92 FDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQKFQTDR-------IIFSPEFL 143
Query: 245 SEGTAMTDLFNADRILIGGEE---TPEGYAAIESLSWVYEHWIPRKH-ILTTNTWSSELS 300
E A+ D RI++ EE A + + +L +E
Sbjct: 144 RESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAV 203
Query: 301 KLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQK 360
KL AN +LA R++ N L E+ + + + + D RIG + S G+GG K
Sbjct: 204 KLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPK 263
Query: 361 DILNLVYICECLNLPE------VASYWQQ---LYESLFNTVSD-----KHIAILGFAFKK 406
D L+ N+P+ V+S + + + + N + + K + + K
Sbjct: 264 DTKQLLANYN--NIPQTLIEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKS 321
Query: 407 NTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPY 466
N+ + RES V L + K+ IY+P + E D +++D
Sbjct: 322 NSDNFRESAIKDVIDILKSKDIKIIIYEPMLN-----------KLESEDQ--SVLVNDLE 368
Query: 467 DTVKNTHAIVVCTEWDEFVTLDYK 490
+ K + IV +E + K
Sbjct: 369 NFKKQANIIVTNRYDNELQDVKNK 392
Score = 114 bits (287), Expect = 1e-27
Identities = 30/167 (17%), Positives = 69/167 (41%), Gaps = 34/167 (20%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
I G+GYVG + ++L +VT+VD +
Sbjct: 3 IAVAGSGYVG----LSLG-------------------VL--LSL---QNEVTIVDILPSK 34
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
+ + N+ PI + ++ +K + +++ + D K+A ++A+L+ I+ T N +
Sbjct: 35 VDKINNGLSPIQDEYIEYYLKS-KQLSIKATLDSKAAYKEAELVIIATPTNY----NSRI 89
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANH 174
D ++VE + + + + ++ KST+P+ + + +
Sbjct: 90 NYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQKFQTDR 135
Score = 71.4 bits (176), Expect = 2e-13
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 521 VHTVIDLNEYQKTRFSEKIISSLFNTVS-DKHIAILGFAFKKNTGDTRESPAIHVCRTLL 579
+ ++ N +K+ +++II+ L S K + + K N+ + RES V L
Sbjct: 280 IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILK 339
Query: 580 YEGAKLKIYDPKLM 593
+ K+ IY+P L
Sbjct: 340 SKDIKIIIYEPMLN 353
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 226 bits (578), Expect = 5e-68
Identities = 74/316 (23%), Positives = 132/316 (41%), Gaps = 39/316 (12%)
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
+ VEA R + EI N +++ KST+PV I L ++ ++ +PEFL
Sbjct: 128 FNTSTVEAVIRDVTEI-NPNAVMIIKSTIPVGFTRDIKERLGIDN-------VIFSPEFL 179
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKH-ILTTNTWSSELSKLA 303
EG A+ D + RI+IG A + E I + L T++ +E KL
Sbjct: 180 REGRALYDNLHPSRIVIGERSA----RAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLF 235
Query: 304 ANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDIL 363
AN +LA R++ N L + E+ G + ++ + V LD RIG + S G+GG C KD
Sbjct: 236 ANTYLALRVAYFNELDSYAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTK 295
Query: 364 NLVYICECLNLPE------VASYWQQ---LYESLFNTVSDKHIAILGFAFKKNTGDTRES 414
L+ E ++P V + + + +S+ K + + K + + R S
Sbjct: 296 QLLANYE--SVPNNIIAAIVDANRTRKDFIADSILA-RKPKVVGVYRLIMKSGSDNFRAS 352
Query: 415 PAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474
+ + + +G + IY+P ++ + E + ++ D +
Sbjct: 353 SIQGIMKRIKAKGIPVIIYEPVMQ-----------EDEFFN---SRVVRDLNAFKQEADV 398
Query: 475 IVVCTEWDEFVTLDYK 490
I+ +E + K
Sbjct: 399 IISNRMAEELADVADK 414
Score = 112 bits (282), Expect = 8e-27
Identities = 36/167 (21%), Positives = 60/167 (35%), Gaps = 34/167 (20%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
I G GYVG L N +V +D + +
Sbjct: 39 ITISGTGYVG----LSNG------------------------VLIAQNHEVVALDIVQAK 70
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
+ N PI + + E + + + +N +TD A + A + I+ T + K
Sbjct: 71 VDMLNQKISPIVDKEIQEYLAE-KPLNFRATTDKHDAYRNADYVIIATPTDY----DPKT 125
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANH 174
+ VEA R + EI N +++ KST+PV I L ++
Sbjct: 126 NYFNTSTVEAVIRDVTEI-NPNAVMIIKSTIPVGFTRDIKERLGIDN 171
Score = 69.9 bits (172), Expect = 6e-13
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 516 DIGFN-VHTVIDLNEYQKTRFSEKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHV 574
+ N + ++D N +K ++ I++ K + + K + + R S +
Sbjct: 303 SVPNNIIAAIVDANRTRKDFIADSILA-----RKPKVVGVYRLIMKSGSDNFRASSIQGI 357
Query: 575 CRTLLYEGAKLKIYDPKLM 593
+ + +G + IY+P +
Sbjct: 358 MKRIKAKGIPVIIYEPVMQ 376
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 152 bits (387), Expect = 8e-41
Identities = 99/533 (18%), Positives = 181/533 (33%), Gaps = 127/533 (23%)
Query: 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65
S + +G GY+G PT + A + V VD ++
Sbjct: 12 SKLTVVGLGYIGLPTSIMFAKH---------------------------GVDVLGVDINQ 44
Query: 66 ERIRQWNSNKLPIYEPGLDEVVKKTRDV-NLFFSTDIKSAIQKAQLIFISVNTPTKTFGN 124
+ I + + ++ I EPGL EV ++ L ST + + + I+V TP +
Sbjct: 45 QTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTP----EASDVFIIAVPTP---NND 97
Query: 125 GKGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRA 184
+ R+ D+ V A I ++ +ST+ + + +
Sbjct: 98 DQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFV----------------- 140
Query: 185 ADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFL 244
K V+E + PE +
Sbjct: 141 --------------------KPVIENLG------------FTIGEDIYLVH----CPERV 164
Query: 245 SEGTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIPRKHILTTNTWSSELSKLAA 304
G + +L + +RI IGG T A + + Y ++ + I T+ ++E+SKL
Sbjct: 165 LPGKILEELVHNNRI-IGG-VTKACIEAGKRV---YRTFVQGEMI-ETDARTAEMSKLME 218
Query: 305 NAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFGGSCFQKDILN 364
N + I+ N L+ +C +V +V + R+ Q G GG C D
Sbjct: 219 NTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNI--HQPGPGVGGHCLAVDPYF 276
Query: 365 LVYIC-ECLNLPEVA--------SYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESP 415
++ E L + +Y + + +S + + G +K + D RESP
Sbjct: 277 IIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESP 336
Query: 416 AIHVCRTLLYE-GAKLKIYDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHA 474
A + L E ++ YDP VE + D+ VK+
Sbjct: 337 AFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSH-------------------AVKDASL 377
Query: 475 IVVCTEWDEFVTLDYKRIYEGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDL 527
+++ ++ EF L MK IFD + ++ + +N + +
Sbjct: 378 VLILSDHSEFKNLSDSHF--DKMKHKVIFDTKNVVKSSFEDVLYYNYGNIFNF 428
Score = 59.9 bits (146), Expect = 1e-09
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 537 EKIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYE-GAKLKIYDP 590
+ + +S + + G +K + D RESPA + L E ++ YDP
Sbjct: 304 DTTKQII-KALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDP 357
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 9e-13
Identities = 90/614 (14%), Positives = 199/614 (32%), Gaps = 193/614 (31%)
Query: 76 LPIYEPGL--DEVVKKTRDV--NLFFSTDIK------SAIQKAQLIFISVNTPTKTFGNG 125
L ++E + K +D+ ++ +I A+ +F ++ +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS-------- 73
Query: 126 KGRAADLKYVEAAAR-----MIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQF 180
K K+VE R +++ I T+ + + + + + + N + K NV
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS- 132
Query: 181 QGRAADLKYVEAAARMIAEIATDNKIVVE------KSTVPVRAAESIMNVLKANHKTNVQ 234
R L+ + + E+ ++++ K+ V A + V ++K +
Sbjct: 133 --R---LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV---ALD----VCL-SYKVQCK 179
Query: 235 --FQI----LSN---PEFLSEGTAMTDLFNADRILIGGEETPEGYAAIE-SLSWVYEH-- 282
F+I L N PE + E + L +I + + I+ + +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLE--MLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 283 --WIPRKH-----ILTTNTWSSELSKLAANAFLAQ-RI-------SSINSLSAVCEATGA 327
+ + +L N +++ NAF +I + LSA AT
Sbjct: 236 RLLKSKPYENCLLVLL-NVQNAKA----WNAFNLSCKILLTTRFKQVTDFLSA---ATTT 287
Query: 328 DVSEVAKAVGLDSR----IGAKFLQASVGFGGSCFQKDI---------LNLVYICECL-N 373
+S ++ L + K+L +D+ L I E + +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRP--------QDLPREVLTTNPRRLSIIAESIRD 339
Query: 374 LPEVASYWQQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIY 433
W+ + T+ + + +L + R+ +++ +L ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVL------EPAEYRK----------MFD--RLSVF 381
Query: 434 DPKVE-PSQIIQ----DLKELDPE----------LLDHNA----VSILD------DPYDT 468
P P+ ++ D+ + D L++ +SI +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 469 VKNTHAIVV-------CTEWDEFVT--LD-YKRIYE---------------GMMKPAYI- 502
H +V + D+ + LD Y Y + + ++
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 503 --FDGRKILNHD--ALLDIGFNVHTVIDLNEYQK-----TRFSEKIISSL--F------N 545
F +KI HD A G ++T+ L Y+ E++++++ F N
Sbjct: 500 FRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 546 TVSDKHIAILGFAF 559
+ K+ +L A
Sbjct: 559 LICSKYTDLLRIAL 572
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 1e-07
Identities = 66/356 (18%), Positives = 114/356 (32%), Gaps = 124/356 (34%)
Query: 126 KGRAADLKY-VEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKT-NVQF--- 180
+G DL Y AA+ + A DN SI++++ N + F
Sbjct: 1629 QGMGMDL-YKTSKAAQDVWNRA-DNHFKDTYG-------FSILDIVINNPVNLTIHFGGE 1679
Query: 181 QGRAADLKYVEAAARMIAEIATDNKIVVEK---------STVPVRAAESIMNVLKANHKT 231
+G+ Y + MI E D K+ EK ++ R+ + +++ T
Sbjct: 1680 KGKRIRENY----SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS------AT 1729
Query: 232 -NVQ----------FQILSNPEFLSEGTAMTDLFNADRILIG---GEETPEGYAAI---- 273
Q F+ L S+G L AD G GE YAA+
Sbjct: 1730 QFTQPALTLMEKAAFEDLK-----SKG-----LIPADATFAGHSLGE-----YAALASLA 1774
Query: 274 ESLSWVYEHWIPRKHILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVA 333
+ +S L ++ + R ++ E ++ +A
Sbjct: 1775 DVMSI------------------ESLVEV-----VFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 334 KAVGLDSRIGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYESLFNTVS 393
G R+ A F Q ++ + K LV I N+ QQ V
Sbjct: 1812 INPG---RVAASFSQEALQYVVERVGKRTGWLVEIV-NYNVEN-----QQ-------YV- 1854
Query: 394 DKHIAILGFAFKKNTGDTRESPAIH-VCRTLLYEGAKLKIYDPKVEPSQIIQDLKE 448
A GD R A+ V L + + KI +++ S +++++
Sbjct: 1855 ---AA----------GDLR---ALDTVTNVLNFIKLQ-KIDIIELQKSLSLEEVEG 1893
Score = 49.3 bits (117), Expect = 4e-06
Identities = 87/529 (16%), Positives = 150/529 (28%), Gaps = 196/529 (37%)
Query: 94 NLFFSTDIKSAIQ-KAQLIFI-SVNTPTKTFGNGKGRAADLK---YVEAAARMIAEIATD 148
FF A Q + Q F + PT+ F AAD + E + + +++
Sbjct: 25 ASFFI-----ASQLQEQ--FNKILPEPTEGF------AADDEPTTPAELVGKFLGYVSS- 70
Query: 149 NKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQG---RAADLKYVEAAARMIAEIATDNK 205
+VE S V VL +F+ D + A A A++ +N
Sbjct: 71 ---LVEPSKVG-----QFDQVLNLCLT---EFENCYLEGND---IHALA---AKLLQEND 113
Query: 206 IVVEKSTVPVRA---AESIMN----------VLKA----NHKTNVQF--QILSNPE-FLS 245
+ K+ ++ A + + +A N + F Q N + +
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--GNTDDYFE 171
Query: 246 EGTAMTDLFNADRILIG------GEETPEGYAAIESLSWVYEH------WI------PRK 287
E + DL+ +L+G E E V+ W+ P K
Sbjct: 172 E---LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 288 HILTTNTWS---SELSKLA-----ANAF------LAQRISSINS-----LSAVCEATGAD 328
L + S + +LA A L + ++AV A
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 329 VSE----VAKAVGLDSRIGAKFLQA---------------SVGFGGSCF--------QKD 361
V KA+ + IG + +A G Q+
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 362 ILNLVYICECLN--LPEVASYWQQLYESLFNTVSDKHIAILG------------------ 401
+ + V N LP +Q+ SL N K++ + G
Sbjct: 349 VQDYV---NKTNSHLPAG----KQVEISLVN--GAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 402 ---------FAFKKNTGDTR----ESP--------AIHV------CRTLLYEGAKLKI-- 432
F+ +K R SP A + + + ++I
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 433 YDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYD---TVKN--THAIV 476
YD DL+ L + + I+ P T + TH +
Sbjct: 460 YDTFDG-----SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Score = 38.5 bits (89), Expect = 0.007
Identities = 59/398 (14%), Positives = 102/398 (25%), Gaps = 138/398 (34%)
Query: 296 SSELSKLAAN--AFLAQRI--SSINSLSAVCEA----------TGADVSEVAKAVGLDSR 341
++ L +++ + S + V G D+ +A L
Sbjct: 55 TTPAE-LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA--AKLLQE 111
Query: 342 IGAKFLQASVGFGGSCFQKDILNLVYICECLNLPEVASYWQQLYES-LFNTVSDKH---I 397
++ ++ I N + P + S LF V + + +
Sbjct: 112 NDTTLVKT---------KELIKNYITARIMAKRPF-----DKKSNSALFRAVGEGNAQLV 157
Query: 398 AILG------FAFKK-----NTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPS--QIIQ 444
AI G F++ T I L E + + KV I++
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 445 DLKEL----DPELLDHNAVS-----------------ILD-DPYDTVKNTHAIVVC---- 478
L+ D + L +S +L P +
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 479 ---------TEWDEFVTLDYK----------RIYEGMMKPAYIFDGRKILNHDAL---LD 516
W+ F K R YE AY L L L+
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE-----AY---PNTSLPPSILEDSLE 329
Query: 517 IGFNVHT----VIDLNEYQKTRFSEKIISSLFNTV--SDKHIAI-LGFAFKKN------- 562
V + + +L + Q + ++ N+ + K + I L N
Sbjct: 330 NNEGVPSPMLSISNLTQEQ----VQDYVNK-TNSHLPAGKQVEISL-----VNGAKNLVV 379
Query: 563 TGDTRESPA--IHVCRTLLYEGAKLKIYDPKLMSRIDH 598
+G P + TL K K SRI
Sbjct: 380 SG----PPQSLYGLNLTL----RKAKAPSGLDQSRIPF 409
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 46.4 bits (109), Expect = 2e-05
Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 45/150 (30%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+C G G G T S +A ++V V+ +
Sbjct: 5 VCVCGGGN--------------------------GAHTLSGLAASRDGVEVRVLTLFADE 38
Query: 68 IRQWN----SNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFG 123
+W +++L + D + + + D + AI A ++ ++V
Sbjct: 39 AERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISGADVVILTVPA------ 92
Query: 124 NGKGRAADLKYVEAAARMIAEIATDNKIVV 153
E + +A D+ ++V
Sbjct: 93 ---------FAHEGYFQAMAPYVQDSALIV 113
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 37.9 bits (87), Expect = 0.008
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+ +GAG G VIA P+++V +++ G + + V+ K
Sbjct: 68 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAM---VMRKPAHL 124
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKA 108
++P + G VVK LF ST + +Q
Sbjct: 125 F--LQELEIPYEDEGDYVVVK---HAALFISTVLSKVLQLP 160
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.14
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 413 ESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQ 444
E A+ + L + A LK+Y P+ I+
Sbjct: 18 EKQAL---KKL--Q-ASLKLYADDSAPALAIK 43
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 32.6 bits (73), Expect = 0.39
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVD 62
+ +G+G+V PT + L I+VTV + + ++ + +D
Sbjct: 5 SVLMLGSGFVTRPT--LDVLTDSGIKVTVACRTL---ESAKKLSAGVQHSTPISLD 55
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 32.1 bits (72), Expect = 0.59
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 6 SHICCIGAGYVGGPTCSVIALKCPNIQVTVVD------KRYVGGPTCSVIALKCPNIQ 57
++ +G+G+V P +A +I VTV + I+L +
Sbjct: 24 KNVLLLGSGFVAQPVIDTLA-ANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDS 80
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 31.5 bits (71), Expect = 0.69
Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSE 65
+ +GAG +G + V + D + ++V + +
Sbjct: 19 VLILGAGNIGRA---IAWDLKDEFDVYIGDVN---NENLEKVKEFATPLKVDASNFDK 70
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 30.8 bits (69), Expect = 1.2
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 1 MVQTISHICCIGAGYVGGPTCSV-IALKCPNIQVTVVDKRYVGGPTCSVIA-LKCP-NIQ 57
M+ + + +G+G +G S + L V ++ + + A N
Sbjct: 2 MMHSQKRVVVLGSGVIG---LSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWT 58
Query: 58 VTVVDKSEERIRQW 71
+ R +W
Sbjct: 59 PFMTLTDGPRQAKW 72
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 30.1 bits (68), Expect = 2.3
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 11 IGAGYVGGPTCSVIALKCPNIQVTVVDKR 39
IG G G T + L+ I V+V ++
Sbjct: 32 IGGG-PVGLTMA-KLLQQNGIDVSVYERD 58
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 29.7 bits (66), Expect = 2.7
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 8 ICCIGAGYVGGPTCSV-IALKCPNIQVTVVDKR 39
I IGAG G + + P + +V+K
Sbjct: 3 ILVIGAG-PAGLVFASQLKQARPLWAIDIVEKN 34
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 29.4 bits (65), Expect = 4.2
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 11 IGAGYVGGPTCSVIA---LKCPNIQVTVVDKR-YVGG 43
+G+G+ G IA + +V V+++R ++GG
Sbjct: 13 VGSGFFG----LTIAERVATQLDKRVLVLERRPHIGG 45
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET:
SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A*
3ssm_A*
Length = 419
Score = 29.2 bits (64), Expect = 4.3
Identities = 20/203 (9%), Positives = 53/203 (26%), Gaps = 17/203 (8%)
Query: 383 QLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKI------YDPK 436
Y+ F ++ + +L ++ + ++ G + + +
Sbjct: 204 PHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDE 263
Query: 437 VEPSQIIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIY--- 493
+ I D + + D D + +A V + F + +Y
Sbjct: 264 LRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIE 323
Query: 494 EGMMKPAYIFDGRKILNHDALLDIGFNVHTVIDLNEYQKTRFSEKIISSLFNTVSDKH-- 551
+ F G+ + +G + + + + + + H
Sbjct: 324 DMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQELPSDPNRSPGYVDRNIVGLHVY 383
Query: 552 --IAILGFAFKKNTGDTRESPAI 572
+A +K D P
Sbjct: 384 HNVAF----VEKGRNDEGGIPTW 402
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 29.0 bits (64), Expect = 4.9
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKR-YVGGPTCSVIALKCPNIQVTVVDKSEE 66
I +GAG G V++ P++++T+V+ GG L + +
Sbjct: 82 IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVM------RKP 135
Query: 67 RIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKA 108
+ +P + G VVK LF ST + +Q+
Sbjct: 136 ADVFLDEVGVPYEDEGDYVVVK---HAALFTSTVLSKVLQRP 174
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 28.4 bits (64), Expect = 6.4
Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 50/146 (34%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+ +GAG VG Y GG L +V ++ + +
Sbjct: 22 VAIMGAGAVGC---------------------YYGG------MLARAGHEVILIAR-PQH 53
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
++ + L + DE VK + S+D SA+Q A L+ V K+
Sbjct: 54 VQAIEATGLRLETQSFDEQVK------VSASSDP-SAVQGADLVLFCV----KSTD---- 98
Query: 128 RAADLKYVEAAARMIAEIATDNKIVV 153
++AA + + +V+
Sbjct: 99 -------TQSAALAMKPALAKSALVL 117
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 28.7 bits (65), Expect = 6.9
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 389 FNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPK-VEPSQIIQDLK 447
T +K + +LG A +G R L GA + + D K + + Q L
Sbjct: 4 ITTFENKKVLVLGLA---RSG-------EAAARLLAKLGAIVTVNDGKPFDENPTAQSLL 53
Query: 448 ELDPEL-LDHNAVSILDDPYDTV 469
E ++ + + +LD+ + +
Sbjct: 54 EEGIKVVCGSHPLELLDEDFCYM 76
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 27.1 bits (60), Expect = 7.2
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 11 IGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVD 62
+GAG +G +++ N VTV D ++ L + VD
Sbjct: 11 VGAGKIGQMIAALLK-TSSNYSVTVADHD-----LAALAVLNRMGVATKQVD 56
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 27.7 bits (62), Expect = 8.3
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 192 AAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEFLSEGTAMT 251
A + + ++++ P + + MN+ + NV PE L
Sbjct: 50 ELAGRVRRV-----YAIDRN--PEAISTTEMNLQRHGLGDNVTLMEGDAPEALC------ 96
Query: 252 DLFNADRILIGG 263
+ + D ++GG
Sbjct: 97 KIPDIDIAVVGG 108
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83,
structural genomics, PSI-2; HET: MSE; 2.15A
{Porphyromonas gingivalis}
Length = 317
Score = 28.0 bits (63), Expect = 8.7
Identities = 26/155 (16%), Positives = 42/155 (27%), Gaps = 46/155 (29%)
Query: 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTV 60
M Q I G G VGG Y G A ++V+
Sbjct: 4 MNQQPIKIAVFGLGGVGG---------------------YYGAMLALRAAATDGLLEVSW 42
Query: 61 VDKSE--ERIRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTP 118
+ + E IR + L + P D + + T TD + + I
Sbjct: 43 IARGAHLEAIRA--AGGLRVVTPSRDFLARPTC------VTDNPAEVGTVDYILFCT--- 91
Query: 119 TKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVV 153
K + +E I + N ++
Sbjct: 92 -KDYD-----------MERGVAEIRPMIGQNTKIL 114
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.80A {Coccidioides immitis}
Length = 353
Score = 28.0 bits (63), Expect = 8.8
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 419 VCRTLLYEGAKLKI---------YDPKVEPSQIIQDLKELDPELLDHNAVSILDDPYDTV 469
V L K+ + Y+ PS I++ +++ + ++ P V
Sbjct: 200 VLFDLAIAATKMGVNVAVATPRGYEI---PSHIVELIQKAREGVQSPGNLTQTTVPEVAV 256
Query: 470 KNTHAIV 476
K+ IV
Sbjct: 257 KDADVIV 263
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 28.1 bits (63), Expect = 8.8
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKR 39
H+ IG G G T + P++++T++ R
Sbjct: 4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDR 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,120,157
Number of extensions: 565383
Number of successful extensions: 1491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1415
Number of HSP's successfully gapped: 65
Length of query: 598
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 499
Effective length of database: 3,937,614
Effective search space: 1964869386
Effective search space used: 1964869386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.6 bits)