RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11160
(598 letters)
>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase,
GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 136
Score = 91.4 bits (226), Expect = 2e-22
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 382 QQLYESLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQ 441
Q+ ++ L + + + +LG +FK T D RESP + + L+ +G +L+I+D VE ++
Sbjct: 2 QKAFD-LITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYAR 60
Query: 442 IIQDLKELDPELLDHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYKRIYEGMMKPAY 501
+ KE + H + ++ D + V ++ +V+ + FV L K
Sbjct: 61 VHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDLVNK-----TPSGKK 115
Query: 502 IFDGRKILNHDAL 514
+ D + H
Sbjct: 116 LVDLVGFMPHTTT 128
Score = 54.4 bits (130), Expect = 2e-09
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 538 KIISSLFNTVSDKHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMS 594
+ L + + + +LG +FK T D RESP + + L+ +G +L+I+D +
Sbjct: 2 QKAFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEY 58
>d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH),
middle domain {Streptococcus pyogenes [TaxId: 1314]}
Length = 98
Score = 64.3 bits (156), Expect = 2e-13
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 295 WSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGAKFLQASVGFG 354
+E KL AN +LA R++ N L E+ + + + + D RIG + S G+G
Sbjct: 2 SEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYG 61
Query: 355 GSCFQKDILNLVYICECLNLP 375
G KD L+ +
Sbjct: 62 GYSLPKDTKQLLANYNNIPQT 82
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH),
C-terminal (UDP-binding) domain {Streptococcus pyogenes
[TaxId: 1314]}
Length = 108
Score = 49.5 bits (118), Expect = 3e-08
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 13/96 (13%)
Query: 395 KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKVEPSQIIQDLKELDPELL 454
K + + K N+ + RES V L + K+ IY+P + +
Sbjct: 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSV------- 68
Query: 455 DHNAVSILDDPYDTVKNTHAIVVCTEWDEFVTLDYK 490
+++D + K + IV +E + K
Sbjct: 69 ------LVNDLENFKKQANIIVTNRYDNELQDVKNK 98
Score = 46.4 bits (110), Expect = 4e-07
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 536 SEKIISSLFNTVSD-KHIAILGFAFKKNTGDTRESPAIHVCRTLLYEGAKLKIYDPKLMS 594
+++II+ L S K + + K N+ + RES V L + K+ IY+P L
Sbjct: 1 AKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNK 60
>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle
domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 98
Score = 48.6 bits (115), Expect = 6e-08
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 296 SSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVAKAVGLDSRIGA--KFLQASVGF 353
+E+ K N + A +++ N + + +A G D EV + D ++ +++ F
Sbjct: 3 VAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAF 62
Query: 354 GGSCFQKDILNLVYICECLNLP 375
GGSC KD+ L Y L++
Sbjct: 63 GGSCLPKDVRALTYRASQLDVE 84
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 202
Score = 50.8 bits (120), Expect = 7e-08
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 28/112 (25%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
I G GYVG ++ + +V VD S +
Sbjct: 3 ISIFGLGYVGAVCAGCLSARG---------------------------HEVIGVDVSSTK 35
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDV-NLFFSTDIKSAIQKAQLIFISVNTP 118
I N K PI EPGL+ ++++ R L +TD K A+ + + FI V TP
Sbjct: 36 IDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTP 87
Score = 30.4 bits (67), Expect = 0.51
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 202 TDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQ--FQILSNPEFLSEGTAMTDLFNADRI 259
+ +VV + +P ++ +++ F + +NPEFL E TA+ D
Sbjct: 115 ERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMT 174
Query: 260 LIGGEETPEGYAAIESLSWVYEHWI 284
+IG + + L +Y
Sbjct: 175 VIGELDK----QTGDLLEEIYRELD 195
>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH)
{Streptococcus pyogenes [TaxId: 1314]}
Length = 196
Score = 45.0 bits (105), Expect = 7e-06
Identities = 31/167 (18%), Positives = 70/167 (41%), Gaps = 34/167 (20%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
I G+GYVG +++L+ +VT+VD +
Sbjct: 3 IAVAGSGYVGLSLGVLLSLQN----------------------------EVTIVDILPSK 34
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
+ + N+ PI + ++ K++ +++ + D K+A ++A+L+ I T T N +
Sbjct: 35 VDKINNGLSPIQDEYIEY-YLKSKQLSIKATLDSKAAYKEAELVII----ATPTNYNSRI 89
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANH 174
D ++VE + + + + ++ KST+P+ + + +
Sbjct: 90 NYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQKFQTDR 135
Score = 41.5 bits (96), Expect = 1e-04
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 10/130 (7%)
Query: 162 AAESIMNVLKANHKTNVQFQGRAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESI 221
AA ++ TN + D ++VE + + + + ++ KST+P+ +
Sbjct: 69 AAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEM 127
Query: 222 MNVLKANHKTNVQFQILSNPEFLSEGTAMTDLFNADRILIGGEE--TPEGYAAIESLSWV 279
+ + +PEFL E A+ D RI++ EE +P+ A E + +
Sbjct: 128 RQKFQTDRIIF-------SPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALL 180
Query: 280 YEHWIPRKHI 289
+ + ++
Sbjct: 181 LKSAAKKNNV 190
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 43.0 bits (100), Expect = 3e-05
Identities = 30/225 (13%), Positives = 61/225 (27%), Gaps = 58/225 (25%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEER 67
+G G G + +ALK V D +R
Sbjct: 4 YAVLGLGNGGHAFAAYLALK---------------------------GQSVLAWDIDAQR 36
Query: 68 IRQWNSNKLPIYEPGLDEVVKKTRDVNLFFSTDIKSAIQKAQLIFISVNTPTKTFGNGKG 127
I++ I + ++DI A++ A +I I V
Sbjct: 37 IKEIQDRGAII----AEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAI--------- 83
Query: 128 RAADLKYVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQGRAADL 187
+ + A IA ++ ++++ A E +L+ N V +
Sbjct: 84 ------HHASIAANIASYISEGQLIILNPGATGGALE-FRKILRENGAPEVTI----GET 132
Query: 188 KYVEAAARM-----IAEIATDNKIVVEKSTVPVRAAESIMNVLKA 227
+ R + A + + +P A + + +
Sbjct: 133 SSMLFTCRSERPGQVTVNAIKGAMDF--ACLPAAKAGWALEQIGS 175
Score = 39.9 bits (92), Expect = 3e-04
Identities = 10/99 (10%), Positives = 28/99 (28%), Gaps = 2/99 (2%)
Query: 189 YVEAAARMIAEIATDNKIVVEKSTVPVRAAESIMNVLKANHKTNVQFQILSNPEF--LSE 246
+ + A IA ++ ++++ A E + + + S
Sbjct: 84 HHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGAPEVTIGETSSMLFTCRSER 143
Query: 247 GTAMTDLFNADRILIGGEETPEGYAAIESLSWVYEHWIP 285
+T + + A+E + V ++
Sbjct: 144 PGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQYVA 182
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 242
Score = 41.9 bits (98), Expect = 1e-04
Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 35/144 (24%)
Query: 55 NIQVTVVDKSEER-IRQWNSNKLPIYEPGLDEVVKK-----------------TRDVNLF 96
V + + + + S P + EVVK DV L
Sbjct: 71 PGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLK 130
Query: 97 FSTDIKSAIQKAQLIFISVNTPTKTFGNGKGRAADLKYVEAAARMIAEIATDNKIVVEKS 156
++D + A++ A ++ + + A+ + IV
Sbjct: 131 VTSDDREAVEGADIVITWLPKG--------------NKQPDIIKKFADAIPEGAIVTHAC 176
Query: 157 TVPVRAAESIMNVLKANHKTNVQF 180
T+P I L + ++
Sbjct: 177 TIPTTKFAKIFKDLG---REDLNI 197
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 37.3 bits (85), Expect = 0.003
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 1 MVQTISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIA 50
M+ + + +G+G +G S + L V ++ + + A
Sbjct: 2 MMHSQKRVVVLGSGVIG--LSSALILARKGYSVHILARDLPEDVSSQTFA 49
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 30.3 bits (67), Expect = 0.61
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 12 GAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVD 62
GAG++G + P++ VTV+DK G ++ A+ +++ V D
Sbjct: 10 GAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGD 60
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 30.0 bits (66), Expect = 0.72
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 3 QTIS-HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVV 61
QTI + IG G GG ++ A + I +V+ + +GG TC I + V
Sbjct: 2 QTIQTTLLIIGGGP-GGYVAAIRAGQL-GIPTVLVEGQALGG-TCLNIGCIPSKALIHVA 58
Query: 62 DKSEERIRQWNSNKLPI 78
++ + R + L I
Sbjct: 59 EQFHQASRFTEPSPLGI 75
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 28.6 bits (62), Expect = 1.5
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKR 39
+ +G G G I L P+I+VT+++
Sbjct: 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN 36
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase
SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 335
Score = 28.1 bits (61), Expect = 2.8
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVDKR-YVGG 43
TI I IGAG G T + + QVT+ ++R GG
Sbjct: 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 43
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide
dehydrogenase {Garden pea (Pisum sativum) [TaxId:
3888]}
Length = 221
Score = 27.1 bits (59), Expect = 6.0
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 11 IGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALKCPNIQVTVVDKSEERIRQ 70
IG G GG ++ A + + T ++KR G TC + + E
Sbjct: 9 IGGGP-GGYVAAIKAAQL-GFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHS 66
Query: 71 WNSNKLPIYEPGLD 84
+ ++ + + +D
Sbjct: 67 FANHGVKVSNVEID 80
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 27.1 bits (58), Expect = 6.2
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 11 IGAGYVGGPTCSVIALKCPNIQVTVVDKRYVGGPTCSVIALK 52
+G G + S + +V +D+ G S I
Sbjct: 12 LGTG-LTECILS-GIMSVNGKKVLHMDRNPYYGGESSSITPL 51
>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of
mitochondrial p450 systems {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 26.8 bits (58), Expect = 6.8
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDKR-YVGG 43
IC +G+G G T + V + +K+ G
Sbjct: 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 40
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus
faecalis [TaxId: 1351]}
Length = 198
Score = 26.7 bits (57), Expect = 6.9
Identities = 4/32 (12%), Positives = 13/32 (40%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKR 39
+ +G+ + G + P+ ++ +K
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG 34
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 26.1 bits (57), Expect = 8.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 8 ICCIGAGYVGGPTCSVIALKCPNIQVTVVDKR 39
I +G G VG I LK ++ +VD
Sbjct: 22 ITVVGVGDVGMACAISILLKGLADELALVDAD 53
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 26.1 bits (56), Expect = 8.8
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 7 HICCIGAGYVGGPTCSVIALKCPNIQVTVVDK 38
+ +G+G+V PT L I+VTV +
Sbjct: 4 SVLMLGSGFVTRPTLD--VLTDSGIKVTVACR 33
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 26.0 bits (56), Expect = 9.5
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 4 TISHICCIGAGYVGGPTCSVIALKCPNIQVTVVD 37
+ H+ IG G +G V A V +VD
Sbjct: 3 IVKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVD 34
>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 26.5 bits (58), Expect = 9.6
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 83 LDEVVKKTRDVNLFFSTDIKSAIQKAQLIFIS------VNTPTKTFGNGKGRAADLKYV 135
LD+ +++ + + +KS +KA+ I V P G+ G+ DL +
Sbjct: 5 LDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMEL 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.390
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,188,220
Number of extensions: 102931
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 34
Length of query: 598
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 508
Effective length of database: 1,171,896
Effective search space: 595323168
Effective search space used: 595323168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.0 bits)