BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11162
(91 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|58393315|ref|XP_319985.2| AGAP009209-PA [Anopheles gambiae str. PEST]
gi|74839219|sp|Q7PVQ9.2|RPB11_ANOGA RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|55235548|gb|EAA14713.2| AGAP009209-PA [Anopheles gambiae str. PEST]
Length = 117
Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/89 (87%), Positives = 85/89 (95%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKELD KVPNAAIFTVNKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF+LRIQ
Sbjct: 17 KKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT+E +PH+A MNAITDLL+ELSLFEERF
Sbjct: 77 TTSEYSPHEAFMNAITDLLSELSLFEERF 105
>gi|340711267|ref|XP_003394200.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Bombus terrestris]
gi|350411736|ref|XP_003489439.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Bombus impatiens]
Length = 117
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/89 (86%), Positives = 84/89 (94%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKE DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDP VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKEQDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ TPHDA M+AITDL+AELSLFEERF
Sbjct: 77 TTSDYTPHDAFMHAITDLIAELSLFEERF 105
>gi|242003519|ref|XP_002422761.1| DNA-directed RNA polymerase II subunit J, putative [Pediculus
humanus corporis]
gi|212505604|gb|EEB10023.1| DNA-directed RNA polymerase II subunit J, putative [Pediculus
humanus corporis]
Length = 117
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 85/89 (95%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI+KELD KVPNAAIFT+NKEDHTLGNMIR+QLLKDP+VLFAGYK PHPLEHKF+LRIQ
Sbjct: 17 KKIVKELDQKVPNAAIFTINKEDHTLGNMIRDQLLKDPNVLFAGYKVPHPLEHKFVLRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ TP DALMNAITDLL+ELSLFEERF
Sbjct: 77 TTSDYTPQDALMNAITDLLSELSLFEERF 105
>gi|125985605|ref|XP_001356566.1| GA19897 [Drosophila pseudoobscura pseudoobscura]
gi|195147658|ref|XP_002014796.1| GL18757 [Drosophila persimilis]
gi|54644890|gb|EAL33630.1| GA19897 [Drosophila pseudoobscura pseudoobscura]
gi|194106749|gb|EDW28792.1| GL18757 [Drosophila persimilis]
Length = 117
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/89 (86%), Positives = 84/89 (94%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKELDTKV NAAIFT+NKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TTAE +P +A MNAITDLLAELSLFEERF
Sbjct: 77 TTAEYSPQEAFMNAITDLLAELSLFEERF 105
>gi|170037676|ref|XP_001846682.1| DNA-directed RNA polymerase II subunit J [Culex quinquefasciatus]
gi|167880966|gb|EDS44349.1| DNA-directed RNA polymerase II subunit J [Culex quinquefasciatus]
Length = 117
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 85/89 (95%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ +P +A MNAITDLL+ELSLFEERF
Sbjct: 77 TTSDYSPQEAFMNAITDLLSELSLFEERF 105
>gi|157136940|ref|XP_001663871.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Aedes aegypti]
gi|108869812|gb|EAT34037.1| AAEL013700-PA [Aedes aegypti]
Length = 117
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 85/89 (95%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ +P +A MNAITDLL+ELSLFEERF
Sbjct: 77 TTSDYSPQEAFMNAITDLLSELSLFEERF 105
>gi|156542813|ref|XP_001607873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Nasonia vitripennis]
Length = 117
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/89 (84%), Positives = 84/89 (94%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKE DTKVPNAAIFT+NKEDHTLGNMIRNQLLKDP VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKEQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKLPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ TPH+A MNA+TDL+AELSLFEERF
Sbjct: 77 TTSDHTPHEAFMNAVTDLIAELSLFEERF 105
>gi|66530114|ref|XP_624001.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Apis
mellifera]
gi|380030239|ref|XP_003698760.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Apis
florea]
gi|383860640|ref|XP_003705797.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Megachile rotundata]
gi|307206928|gb|EFN84774.1| DNA-directed RNA polymerase II subunit RPB11 [Harpegnathos
saltator]
Length = 117
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 84/89 (94%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKE DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDP VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKEQDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ TPH+A M+AITDL+AELSLFEERF
Sbjct: 77 TTSDYTPHEAFMHAITDLIAELSLFEERF 105
>gi|332030496|gb|EGI70184.1| DNA-directed RNA polymerase II subunit RPB11 [Acromyrmex
echinatior]
Length = 137
Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/89 (84%), Positives = 84/89 (94%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKE DTKVPNAAIFT+NKEDHTLGNMIRNQLLKDP VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKEQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ TPH+A M+AITDL+AELSLFEERF
Sbjct: 77 TTSDYTPHEAFMHAITDLIAELSLFEERF 105
>gi|242247465|ref|NP_001156261.1| DNA-directed RNA polymerase II subunit RPB11-a [Acyrthosiphon
pisum]
gi|239799164|dbj|BAH70515.1| ACYPI008208 [Acyrthosiphon pisum]
Length = 117
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/89 (86%), Positives = 84/89 (94%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI+KE+DTKV NAAIFTVNKEDHTLGNMIRNQLLKDP+VLFAGYKQPHPLEHKF LRIQ
Sbjct: 17 KKIVKEVDTKVTNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKQPHPLEHKFELRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ TP DAL N+ITDLLAELSLFEERF
Sbjct: 77 TTSDYTPQDALTNSITDLLAELSLFEERF 105
>gi|19921456|ref|NP_609836.1| Rpb11 [Drosophila melanogaster]
gi|194758938|ref|XP_001961713.1| GF15107 [Drosophila ananassae]
gi|194880502|ref|XP_001974452.1| GG21750 [Drosophila erecta]
gi|195035867|ref|XP_001989393.1| GH10081 [Drosophila grimshawi]
gi|195114074|ref|XP_002001592.1| GI16585 [Drosophila mojavensis]
gi|195401096|ref|XP_002059150.1| GJ16235 [Drosophila virilis]
gi|195438427|ref|XP_002067138.1| GK24832 [Drosophila willistoni]
gi|195483889|ref|XP_002090472.1| GE13140 [Drosophila yakuba]
gi|195579746|ref|XP_002079722.1| GD21874 [Drosophila simulans]
gi|11387116|sp|Q9VJE4.1|RPB11_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 13.3 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
II subunit J
gi|7298381|gb|AAF53606.1| Rpb11 [Drosophila melanogaster]
gi|190615410|gb|EDV30934.1| GF15107 [Drosophila ananassae]
gi|190657639|gb|EDV54852.1| GG21750 [Drosophila erecta]
gi|193905393|gb|EDW04260.1| GH10081 [Drosophila grimshawi]
gi|193912167|gb|EDW11034.1| GI16585 [Drosophila mojavensis]
gi|194156024|gb|EDW71208.1| GJ16235 [Drosophila virilis]
gi|194163223|gb|EDW78124.1| GK24832 [Drosophila willistoni]
gi|194176573|gb|EDW90184.1| GE13140 [Drosophila yakuba]
gi|194191731|gb|EDX05307.1| GD21874 [Drosophila simulans]
gi|343962697|gb|AEM72514.1| MIP32452p1 [Drosophila melanogaster]
Length = 117
Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 84/89 (94%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKELDTKV NAAIFT+NKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TTA+ +P +A MNAITDLLAELSLFEERF
Sbjct: 77 TTADYSPQEAFMNAITDLLAELSLFEERF 105
>gi|307188715|gb|EFN73365.1| DNA-directed RNA polymerase II subunit RPB11 [Camponotus
floridanus]
Length = 117
Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/89 (84%), Positives = 84/89 (94%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKE DTKVPNAAIFT+NKEDHTLGNMIRNQLLKDP VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKEQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ TPH+A M+AITDL+AELSLFEERF
Sbjct: 77 TTSDYTPHEAFMHAITDLIAELSLFEERF 105
>gi|91090444|ref|XP_966925.1| PREDICTED: similar to DNA-directed RNA polymerase II 13.3 kDa
polypeptide [Tribolium castaneum]
gi|270013848|gb|EFA10296.1| hypothetical protein TcasGA2_TC012511 [Tribolium castaneum]
Length = 117
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/89 (82%), Positives = 85/89 (95%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KII+E DTKVPNAAIFT+NKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF+LRIQ
Sbjct: 17 KKIIREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVLRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ +P +ALMN+ITDL++ELSLFEERF
Sbjct: 77 TTSDYSPQEALMNSITDLISELSLFEERF 105
>gi|322785814|gb|EFZ12433.1| hypothetical protein SINV_02880 [Solenopsis invicta]
Length = 91
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/88 (84%), Positives = 83/88 (94%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
+IIKE DTKVPNAAIFT+NKEDHTLGNMIRNQLLKDP VLFAGYK PHPLEHKF++RIQT
Sbjct: 3 RIIKEQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQT 62
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T++ TPH+A M+AITDL+AELSLFEERF
Sbjct: 63 TSDYTPHEAFMHAITDLIAELSLFEERF 90
>gi|321474423|gb|EFX85388.1| hypothetical protein DAPPUDRAFT_230556 [Daphnia pulex]
Length = 117
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 82/89 (92%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KII E DTKVPNAAIFTVNKEDHTLGNMIR QLLKDP+VLFAGYKQPHPLEHKFILRIQ
Sbjct: 17 KKIIVEQDTKVPNAAIFTVNKEDHTLGNMIRCQLLKDPNVLFAGYKQPHPLEHKFILRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
+T +PHDALMNAITDL++ELSL EERF
Sbjct: 77 STPAYSPHDALMNAITDLISELSLLEERF 105
>gi|343962687|gb|AEM72509.1| MIP32352p1 [Drosophila melanogaster]
Length = 117
Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/89 (84%), Positives = 83/89 (93%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKELDTKV NAAIFT+NKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TTA+ +P +A MNAITDLLAEL LFEERF
Sbjct: 77 TTADYSPQEAFMNAITDLLAELFLFEERF 105
>gi|332374220|gb|AEE62251.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/89 (82%), Positives = 83/89 (93%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +E DTKVPNAAIFT+NKEDHTLGNMIRNQLLKDP VLFAGYK PHPLEHKF+LRIQ
Sbjct: 17 KKIDREQDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPSVLFAGYKLPHPLEHKFVLRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ +P DALM+AITDL++ELSLFEERF
Sbjct: 77 TTSDYSPQDALMHAITDLISELSLFEERF 105
>gi|195344678|ref|XP_002038908.1| GM17133 [Drosophila sechellia]
gi|194134038|gb|EDW55554.1| GM17133 [Drosophila sechellia]
Length = 105
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/88 (82%), Positives = 81/88 (92%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKELDTKV NAAIFT+NKEDHTLGNMIRNQLLKD +VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDHNVLFAGYKVPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEER 90
TTA+ +P +A MNAITDLLAE SLFEER
Sbjct: 77 TTADYSPQEAFMNAITDLLAEFSLFEER 104
>gi|357608007|gb|EHJ65777.1| putative DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Danaus plexippus]
Length = 117
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 80/89 (89%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ KE DTKV NAAIFTVNKEDH+LGNMIR+QLLKDP VLFAGYK PHPLEHKF+LRIQ
Sbjct: 17 KKVQKEEDTKVTNAAIFTVNKEDHSLGNMIRHQLLKDPKVLFAGYKVPHPLEHKFVLRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ TP DA MNAITDL +ELSLFEERF
Sbjct: 77 TTSDYTPQDAFMNAITDLTSELSLFEERF 105
>gi|193671627|ref|XP_001943405.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Acyrthosiphon pisum]
Length = 119
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 82/90 (91%), Gaps = 1/90 (1%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI++ELDTKV NAAIFT+NKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF LRIQ
Sbjct: 17 KKIVQELDTKVVNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFELRIQ 76
Query: 63 TTA-ESTPHDALMNAITDLLAELSLFEERF 91
T+ E TP DAL N++TDLLAELSLFEERF
Sbjct: 77 TSCPEYTPQDALTNSLTDLLAELSLFEERF 106
>gi|402588406|gb|EJW82339.1| RNA polymerase II subunit [Wuchereria bancrofti]
Length = 166
Score = 150 bits (379), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/89 (78%), Positives = 82/89 (92%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI E DTKVPNAAIFTVNKEDHT+GN++++QLLKDP VLFAGYK PHPLEHKFILR+Q
Sbjct: 17 KKIAIEKDTKVPNAAIFTVNKEDHTIGNLLKHQLLKDPQVLFAGYKCPHPLEHKFILRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT+++TP DAL +AITDL+AELSLFEERF
Sbjct: 77 TTSDTTPADALTSAITDLMAELSLFEERF 105
>gi|393911983|gb|EFO17249.2| DNA-directed RNA polymerase II subunit RPB11-a [Loa loa]
Length = 117
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/89 (78%), Positives = 82/89 (92%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI E DTKVPNAAIFTVNKEDHT+GN++++QLLKDP VLFAGYK PHPLEHKFILR+Q
Sbjct: 17 KKITIEKDTKVPNAAIFTVNKEDHTIGNLLKHQLLKDPQVLFAGYKCPHPLEHKFILRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT+++TP DAL +AITDL+AELSLFEERF
Sbjct: 77 TTSDTTPADALTSAITDLMAELSLFEERF 105
>gi|324533414|gb|ADY49303.1| DNA-directed RNA polymerase II subunit RPB11 [Ascaris suum]
Length = 117
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 82/89 (92%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ + DTKVPNAAIFT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHKFILRIQ
Sbjct: 17 KKVTFQKDTKVPNAAIFTINKEDHTLGNLIKHQLLKDPQVLFAGYKNPHPLEHKFILRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++++P DAL +AITDL+AELSLFEERF
Sbjct: 77 TTSDTSPSDALTSAITDLMAELSLFEERF 105
>gi|312090992|ref|XP_003146821.1| RNA polymerase II [Loa loa]
Length = 124
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/89 (78%), Positives = 82/89 (92%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI E DTKVPNAAIFTVNKEDHT+GN++++QLLKDP VLFAGYK PHPLEHKFILR+Q
Sbjct: 17 KKITIEKDTKVPNAAIFTVNKEDHTIGNLLKHQLLKDPQVLFAGYKCPHPLEHKFILRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT+++TP DAL +AITDL+AELSLFEERF
Sbjct: 77 TTSDTTPADALTSAITDLMAELSLFEERF 105
>gi|389609993|dbj|BAM18608.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide rpb11 [Papilio
xuthus]
Length = 117
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/89 (79%), Positives = 80/89 (89%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ KE DTKV NAAIFTVNKEDHTLGNMIR+QLLKDP VLFAGYK PHPLEHKF+LRIQ
Sbjct: 17 KKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ TP +A MNA+TDL +ELSLFEERF
Sbjct: 77 TTSDYTPQEAFMNALTDLTSELSLFEERF 105
>gi|240271228|gb|ACS53479.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271236|gb|ACS53483.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
Length = 84
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 77/81 (95%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKELD KVPNAAIFTVNKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF+LRIQ
Sbjct: 4 KKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQ 63
Query: 63 TTAESTPHDALMNAITDLLAE 83
TT+E +PH+A MNAITDLL+E
Sbjct: 64 TTSEYSPHEAFMNAITDLLSE 84
>gi|240271196|gb|ACS53463.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271198|gb|ACS53464.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271200|gb|ACS53465.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271202|gb|ACS53466.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271206|gb|ACS53468.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271208|gb|ACS53469.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271210|gb|ACS53470.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271212|gb|ACS53471.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271214|gb|ACS53472.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271216|gb|ACS53473.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271218|gb|ACS53474.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271220|gb|ACS53475.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271222|gb|ACS53476.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271224|gb|ACS53477.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271226|gb|ACS53478.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271230|gb|ACS53480.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271232|gb|ACS53481.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271234|gb|ACS53482.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271238|gb|ACS53484.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271240|gb|ACS53485.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271242|gb|ACS53486.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271246|gb|ACS53488.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271248|gb|ACS53489.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271250|gb|ACS53490.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271252|gb|ACS53491.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271254|gb|ACS53492.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271256|gb|ACS53493.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271262|gb|ACS53496.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271264|gb|ACS53497.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271268|gb|ACS53499.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271274|gb|ACS53502.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271276|gb|ACS53503.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271278|gb|ACS53504.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271290|gb|ACS53510.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271292|gb|ACS53511.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271294|gb|ACS53512.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271298|gb|ACS53514.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271300|gb|ACS53515.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271302|gb|ACS53516.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271304|gb|ACS53517.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271306|gb|ACS53518.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271310|gb|ACS53520.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271312|gb|ACS53521.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271314|gb|ACS53522.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271316|gb|ACS53523.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
merus]
gi|240271318|gb|ACS53524.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
quadriannulatus]
gi|240271320|gb|ACS53525.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
vagus]
gi|240271322|gb|ACS53526.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271324|gb|ACS53527.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271326|gb|ACS53528.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271328|gb|ACS53529.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271330|gb|ACS53530.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271332|gb|ACS53531.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271334|gb|ACS53532.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
gi|240271336|gb|ACS53533.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
melas]
Length = 85
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 77/81 (95%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKELD KVPNAAIFTVNKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF+LRIQ
Sbjct: 5 KKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQ 64
Query: 63 TTAESTPHDALMNAITDLLAE 83
TT+E +PH+A MNAITDLL+E
Sbjct: 65 TTSEYSPHEAFMNAITDLLSE 85
>gi|149689200|gb|ABR27969.1| DNA-directed RNA polymerase II 13.3 kda polypeptide [Triatoma
infestans]
Length = 117
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 79/88 (89%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+I+E+DTKVPNAAIFT+NKEDHTLGNMIRNQLLKDP VLFAGYK PHPL+ KF++RIQT
Sbjct: 18 KVIREMDTKVPNAAIFTINKEDHTLGNMIRNQLLKDPKVLFAGYKVPHPLDPKFVIRIQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + TP L NAITDL++ELSLFEERF
Sbjct: 78 TNDETPQSVLKNAITDLISELSLFEERF 105
>gi|241566022|ref|XP_002402072.1| RNA polymerases L, putative [Ixodes scapularis]
gi|215499963|gb|EEC09457.1| RNA polymerases L, putative [Ixodes scapularis]
gi|442757575|gb|JAA70946.1| Putative rna polymerase subunit l [Ixodes ricinus]
Length = 117
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/89 (80%), Positives = 78/89 (87%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI E DTKVPNAAIFTVNKEDHTLGNMIR QLLKDP VLFAGYK PHPLEHKFILR+Q
Sbjct: 17 KKITIEKDTKVPNAAIFTVNKEDHTLGNMIRAQLLKDPCVLFAGYKVPHPLEHKFILRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT +STP +A NAITDL++ELSL EERF
Sbjct: 77 TTPDSTPQEAFTNAITDLISELSLLEERF 105
>gi|25012186|gb|AAN71209.1| GM15177p [Drosophila melanogaster]
Length = 136
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 84/108 (77%), Gaps = 19/108 (17%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIR-------------------NQLLKDPHVL 43
+KIIKELDTKV NAAIFT+NKEDHTLGNMIR +QLLKDP+VL
Sbjct: 17 KKIIKELDTKVTNAAIFTINKEDHTLGNMIRKYVGQQARLITHEICILACSQLLKDPNVL 76
Query: 44 FAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
FAGYK PHPLEHKF++RIQTTA+ +P +A MNAITDLLAELSLFEERF
Sbjct: 77 FAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERF 124
>gi|290561711|gb|ADD38255.1| DNA-directed RNA polymerase II subunit RPB11 [Lepeophtheirus
salmonis]
Length = 117
Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 81/89 (91%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI KE DTKVPNA+IFT+NKEDHTLGN++R+QLLKDP+VLF GYK PHPLE+K ILRIQ
Sbjct: 17 KKITKEQDTKVPNASIFTINKEDHTLGNLVRHQLLKDPNVLFTGYKNPHPLENKIILRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ TP DALMNAITDL++ELSLFEE F
Sbjct: 77 TTSDYTPLDALMNAITDLISELSLFEESF 105
>gi|240271204|gb|ACS53467.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
arabiensis]
gi|240271244|gb|ACS53487.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271260|gb|ACS53495.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271266|gb|ACS53498.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271270|gb|ACS53500.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271272|gb|ACS53501.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271280|gb|ACS53505.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271282|gb|ACS53506.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271284|gb|ACS53507.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271286|gb|ACS53508.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271288|gb|ACS53509.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271296|gb|ACS53513.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
gi|240271308|gb|ACS53519.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
Length = 79
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/79 (87%), Positives = 75/79 (94%)
Query: 5 IIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTT 64
IIKELD KVPNAAIFTVNKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF+LRIQTT
Sbjct: 1 IIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTT 60
Query: 65 AESTPHDALMNAITDLLAE 83
+E +PH+A MNAITDLL+E
Sbjct: 61 SEYSPHEAFMNAITDLLSE 79
>gi|346470095|gb|AEO34892.1| hypothetical protein [Amblyomma maculatum]
gi|346470103|gb|AEO34896.1| hypothetical protein [Amblyomma maculatum]
Length = 117
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/89 (78%), Positives = 76/89 (85%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI E DTKVPNAAIFTVNKEDHTL NMIR QLLKDP VLFAGYK PHPLEHKFILR+Q
Sbjct: 17 KKITIEKDTKVPNAAIFTVNKEDHTLANMIRAQLLKDPCVLFAGYKVPHPLEHKFILRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + TP +A NAITDL++ELSL EERF
Sbjct: 77 TTPDCTPQEAFTNAITDLISELSLLEERF 105
>gi|427786191|gb|JAA58547.1| Putative rna polymerases l [Rhipicephalus pulchellus]
Length = 117
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 77/89 (86%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTKVPNAAIFTVNKEDHTL NMIR QLLKDP VLFAGYK PHPLEHKFILR+Q
Sbjct: 17 KKVTIEKDTKVPNAAIFTVNKEDHTLANMIRAQLLKDPCVLFAGYKVPHPLEHKFILRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT ++TP +A NAITDL++ELSL EERF
Sbjct: 77 TTPDNTPQEAFTNAITDLISELSLLEERF 105
>gi|390350815|ref|XP_786311.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Strongylocentrotus purpuratus]
Length = 108
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 77/91 (84%)
Query: 1 MIRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILR 60
M KI E DTKVPNAAIFTVNKEDHTLGN++R QLLKDP VLFAGYK PHPLEHKF+LR
Sbjct: 6 MCAKITIEKDTKVPNAAIFTVNKEDHTLGNILRAQLLKDPQVLFAGYKVPHPLEHKFVLR 65
Query: 61 IQTTAESTPHDALMNAITDLLAELSLFEERF 91
+QTT + +P +A NAITDL++E+SL EERF
Sbjct: 66 VQTTPDYSPQEAFTNAITDLISEISLLEERF 96
>gi|240271258|gb|ACS53494.1| putative DNA-directed RNA polymerase II subunit J [Anopheles
gambiae]
Length = 79
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/79 (86%), Positives = 74/79 (93%)
Query: 5 IIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTT 64
IIKELD KVPNAAIFTVNKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF+LRIQTT
Sbjct: 1 IIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTT 60
Query: 65 AESTPHDALMNAITDLLAE 83
+E +PH+A M AITDLL+E
Sbjct: 61 SEYSPHEAFMXAITDLLSE 79
>gi|170586962|ref|XP_001898248.1| RNA polymerase II. [Brugia malayi]
gi|158594643|gb|EDP33227.1| RNA polymerase II., putative [Brugia malayi]
Length = 133
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 82/105 (78%), Gaps = 16/105 (15%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIR----------------NQLLKDPHVLFAG 46
+KI E DTKVPNAAIFTVNKEDHT+GN+++ +QLLKDP VLFAG
Sbjct: 17 KKIAIEKDTKVPNAAIFTVNKEDHTIGNLLKQFAAKIFHKSYFGTFCSQLLKDPQVLFAG 76
Query: 47 YKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
YK PHPLEHKFILR+QTT+++TP DAL +AITDL+AELSLFEERF
Sbjct: 77 YKCPHPLEHKFILRVQTTSDTTPEDALTSAITDLMAELSLFEERF 121
>gi|391324947|ref|XP_003737003.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Metaseiulus occidentalis]
Length = 117
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 77/89 (86%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI E DTKVPNA+IFT+NKEDHTLGNMIR QLLKDP V FAGYK PHPLEHK +LR+Q
Sbjct: 17 KKITIEKDTKVPNASIFTINKEDHTLGNMIRAQLLKDPLVTFAGYKNPHPLEHKILLRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT +STP +AL +AI DL++ELSLFEERF
Sbjct: 77 TTPDSTPVEALKSAINDLMSELSLFEERF 105
>gi|443693124|gb|ELT94560.1| hypothetical protein CAPTEDRAFT_4697 [Capitella teleta]
Length = 130
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTKVPNAAIFTVNKEDHTLGN +R QLLKDP VLFAGYK PHPLE+KF+LRIQ
Sbjct: 17 KKVTIEKDTKVPNAAIFTVNKEDHTLGNALRTQLLKDPKVLFAGYKVPHPLENKFVLRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T AE +P +A NAITDL+AE+SL EE F
Sbjct: 77 TVAEYSPQEAFTNAITDLMAEVSLLEENF 105
>gi|33359678|gb|AAP97076.1| RNA polymerase II subunit [Branchiostoma belcheri]
Length = 135
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 76/89 (85%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNAAIFTVNKEDHTLGN++R QLLKDP V+FAGYK PHPLEHKF+LR+Q
Sbjct: 17 KKITITKDTKVPNAAIFTVNKEDHTLGNLLRAQLLKDPQVIFAGYKVPHPLEHKFVLRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++E+SL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISEVSLLEERF 105
>gi|341892406|gb|EGT48341.1| CBN-RPB-11 protein [Caenorhabditis brenneri]
Length = 122
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 73/89 (82%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K E DTKVPNAAIFT+NKEDHTLGNM++ QLLKDP VLFAGYK PHPLEHK +LRIQ
Sbjct: 16 KKFYIEKDTKVPNAAIFTINKEDHTLGNMLKVQLLKDPEVLFAGYKNPHPLEHKILLRIQ 75
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT +TP DAL AITDL+ ELSL E RF
Sbjct: 76 TTNNTTPADALTTAITDLVGELSLLERRF 104
>gi|198423020|ref|XP_002125909.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide J [Ciona intestinalis]
Length = 117
Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNAA FTVNKEDHTLGN++R QLLKDP VLFAGYK PHPLEHKFILR+Q
Sbjct: 17 KKISITKDTKVPNAAHFTVNKEDHTLGNILRTQLLKDPKVLFAGYKVPHPLEHKFILRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++E+SL EERF
Sbjct: 77 TTGDYSPQEAFTNAITDLISEISLLEERF 105
>gi|308480489|ref|XP_003102451.1| CRE-RPB-11 protein [Caenorhabditis remanei]
gi|308261183|gb|EFP05136.1| CRE-RPB-11 protein [Caenorhabditis remanei]
Length = 122
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 74/88 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K E DTKVPNAAIFT+NKEDHTLGNM++ QLLKDP VLFAGYK PHPLEHK +LRIQ
Sbjct: 16 KKFYIEKDTKVPNAAIFTINKEDHTLGNMLKVQLLKDPEVLFAGYKNPHPLEHKILLRIQ 75
Query: 63 TTAESTPHDALMNAITDLLAELSLFEER 90
TT+++TP DAL AITDL+ ELSL E R
Sbjct: 76 TTSQTTPADALTTAITDLVGELSLLEHR 103
>gi|410984536|ref|XP_003998584.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB11-like [Felis catus]
Length = 117
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKXPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|291232049|ref|XP_002735997.1| PREDICTED: DNA directed RNA polymerase II polypeptide J-like
[Saccoglossus kowalevskii]
Length = 110
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 73/82 (89%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNAA+FTVNKEDHTLGN++R+QLLKDP VLFAGYK PHPLE KF+LR+QTT + +P
Sbjct: 17 DTKVPNAAMFTVNKEDHTLGNLLRSQLLKDPQVLFAGYKVPHPLEFKFVLRVQTTPDYSP 76
Query: 70 HDALMNAITDLLAELSLFEERF 91
+A NAITDL++E+SL EERF
Sbjct: 77 QEAFTNAITDLISEVSLLEERF 98
>gi|432858786|ref|XP_004068938.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Oryzias latipes]
Length = 141
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 74/89 (83%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+IR QLLKDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 41 KKISISKDTKVPNACLFTLNKEDHTLGNIIRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQ 100
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 101 TTPDYSPQEAFTNAITDLISELSLLEERF 129
>gi|268533032|ref|XP_002631644.1| C. briggsae CBR-RPB-11 protein [Caenorhabditis briggsae]
gi|74845978|sp|Q60SM4.1|RPB11_CAEBR RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
Length = 122
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 73/89 (82%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI E DTKVPNAAIFT+NKEDHTLGNM++ QLLKDP VLFAGYK PHPLEHK +LR+Q
Sbjct: 16 KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQ 75
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT +TP DAL AITDL+ ELSL E R
Sbjct: 76 TTNATTPADALTTAITDLVGELSLLEHRI 104
>gi|417408018|gb|JAA50583.1| Putative rna polymerase subunit l, partial [Desmodus rotundus]
Length = 138
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 38 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 97
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 98 TTPDYSPQEAFTNAITDLISELSLLEERF 126
>gi|11595485|emb|CAC18368.1| RPB11a protein [Homo sapiens]
Length = 127
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|308322417|gb|ADO28346.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus furcatus]
Length = 117
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+IR+QLLKDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 17 KKITITKDTKVPNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|5453932|ref|NP_006225.1| DNA-directed RNA polymerase II subunit RPB11-a [Homo sapiens]
gi|82697397|ref|NP_001032560.1| DNA-directed RNA polymerase II subunit RPB11 [Bos taurus]
gi|157786902|ref|NP_001099391.1| polymerase (RNA) II (DNA directed) polypeptide J [Rattus
norvegicus]
gi|188219604|ref|NP_035423.2| DNA-directed RNA polymerase II subunit RPB11 [Mus musculus]
gi|350537195|ref|NP_001232039.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|126314418|ref|XP_001366429.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Monodelphis domestica]
gi|149755994|ref|XP_001504521.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Equus
caballus]
gi|291415582|ref|XP_002724029.1| PREDICTED: DNA directed RNA polymerase II polypeptide J-like
[Oryctolagus cuniculus]
gi|297680126|ref|XP_002817856.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Pongo
abelii]
gi|301780882|ref|XP_002925859.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Ailuropoda melanoleuca]
gi|326931232|ref|XP_003211737.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Meleagris gallopavo]
gi|335284198|ref|XP_003124442.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Sus scrofa]
gi|335284200|ref|XP_003354537.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 2 [Sus scrofa]
gi|344289757|ref|XP_003416607.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Loxodonta africana]
gi|345801173|ref|XP_003434782.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Canis
lupus familiaris]
gi|348568806|ref|XP_003470189.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Cavia
porcellus]
gi|403285780|ref|XP_003934189.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Saimiri
boliviensis boliviensis]
gi|410059453|ref|XP_003949275.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Pan
troglodytes]
gi|426254733|ref|XP_004021031.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Ovis
aries]
gi|1710661|sp|P52435.1|RPB11_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-a;
Short=RNA polymerase II subunit B11-a; Short=RPB11a;
AltName: Full=DNA-directed RNA polymerase II subunit
J-1; AltName: Full=RNA polymerase II 13.3 kDa subunit
gi|116256059|sp|Q32P79.1|RPB11_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|1220358|gb|AAD05361.1| RNA polymerase II [Homo sapiens]
gi|1730469|emb|CAA67075.1| RNA polymerase II subunit [Homo sapiens]
gi|4165267|emb|CAA57785.1| RNA polymerase II subunit [Homo sapiens]
gi|18848196|gb|AAH24165.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Homo
sapiens]
gi|27781313|gb|AAH42939.1| Polymerase (RNA) II (DNA directed) polypeptide J [Mus musculus]
gi|41351295|gb|AAH65711.1| POLR2J protein [Homo sapiens]
gi|74177404|dbj|BAE34594.1| unnamed protein product [Mus musculus]
gi|79160201|gb|AAI08227.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Bos
taurus]
gi|123992951|gb|ABM84077.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
[synthetic construct]
gi|123999873|gb|ABM87445.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa
[synthetic construct]
gi|146218587|gb|AAI39903.1| Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Homo
sapiens]
gi|146327795|gb|AAI41831.1| POLR2J protein [Homo sapiens]
gi|148687376|gb|EDL19323.1| polymerase (RNA) II (DNA directed) polypeptide J [Mus musculus]
gi|149063001|gb|EDM13324.1| polymerase (RNA) II (DNA directed) polypeptide J (predicted)
[Rattus norvegicus]
gi|158254462|dbj|BAF83204.1| unnamed protein product [Homo sapiens]
gi|197129074|gb|ACH45572.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|197129075|gb|ACH45573.1| putative DNA directed RNA polymerase II polypeptide J [Taeniopygia
guttata]
gi|296472981|tpg|DAA15096.1| TPA: DNA-directed RNA polymerase II subunit RPB11 [Bos taurus]
gi|351698747|gb|EHB01666.1| DNA-directed RNA polymerase II subunit RPB11-a [Heterocephalus
glaber]
gi|380783319|gb|AFE63535.1| DNA-directed RNA polymerase II subunit RPB11-a [Macaca mulatta]
gi|384944160|gb|AFI35685.1| DNA-directed RNA polymerase II subunit RPB11-a [Macaca mulatta]
gi|410212832|gb|JAA03635.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|410252394|gb|JAA14164.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|410295166|gb|JAA26183.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Pan
troglodytes]
gi|431898190|gb|ELK06885.1| DNA-directed RNA polymerase II subunit RPB11-a [Pteropus alecto]
gi|440908432|gb|ELR58446.1| DNA-directed RNA polymerase II subunit RPB11-a [Bos grunniens
mutus]
gi|1589095|prf||2210288A RNA polymerase II
Length = 117
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|317587873|ref|NP_001187715.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus
punctatus]
gi|225706696|gb|ACO09194.1| DNA-directed RNA polymerase II subunit J [Osmerus mordax]
gi|308323781|gb|ADO29026.1| DNA-directed RNA polymerase II subunit rpb11-a [Ictalurus
punctatus]
Length = 117
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+IR+QLLKDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 17 KKITITKDTKVPNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|390459035|ref|XP_002744022.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like,
partial [Callithrix jacchus]
Length = 114
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|444715581|gb|ELW56446.1| DNA-directed RNA polymerase II subunit RPB11-a [Tupaia chinensis]
Length = 131
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 72/82 (87%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P
Sbjct: 38 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSP 97
Query: 70 HDALMNAITDLLAELSLFEERF 91
+A NAITDL++ELSL EERF
Sbjct: 98 QEAFTNAITDLISELSLLEERF 119
>gi|2500634|sp|O08740.1|RPB11_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J; AltName:
Full=RNA polymerase II 13.3 kDa subunit; AltName:
Full=RPB14
gi|2081616|dbj|BAA19918.1| RNA polymerase II subuunit RPB14 [Mus musculus]
Length = 117
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|297288087|ref|XP_001114645.2| PREDICTED: ras GTPase-activating protein 4 [Macaca mulatta]
Length = 642
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 72/82 (87%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P
Sbjct: 549 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSP 608
Query: 70 HDALMNAITDLLAELSLFEERF 91
+A NAITDL++ELSL EERF
Sbjct: 609 QEAFTNAITDLISELSLLEERF 630
>gi|387914122|gb|AFK10670.1| polymerase (RNA) II (DNA directed) polypeptide J [Callorhinchus
milii]
Length = 117
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 74/89 (83%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN IR+QLLKDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 17 KKITITKDTKVPNACLFTINKEDHTLGNTIRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|66773140|ref|NP_001019571.1| polymerase (RNA) II (DNA directed) polypeptide J [Danio rerio]
gi|66267264|gb|AAH95123.1| Polymerase (RNA) II (DNA directed) polypeptide J [Danio rerio]
gi|182890238|gb|AAI65488.1| Polr2j protein [Danio rerio]
Length = 117
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+IR+QLLKDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 17 KKITITKDTKVPNACLFTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|426357372|ref|XP_004046017.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Gorilla gorilla gorilla]
Length = 171
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 72/82 (87%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P
Sbjct: 36 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSP 95
Query: 70 HDALMNAITDLLAELSLFEERF 91
+A NAITDL++ELSL EERF
Sbjct: 96 QEAFTNAITDLISELSLLEERF 117
>gi|355560539|gb|EHH17225.1| hypothetical protein EGK_13571 [Macaca mulatta]
gi|355747568|gb|EHH52065.1| hypothetical protein EGM_12433 [Macaca fascicularis]
Length = 158
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 74/88 (84%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QT
Sbjct: 17 KITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + +P +A NAITDL++ELSL EERF
Sbjct: 77 TPDYSPQEAFTNAITDLISELSLLEERF 104
>gi|350581483|ref|XP_003481048.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like,
partial [Sus scrofa]
Length = 99
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 72/82 (87%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P
Sbjct: 6 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSP 65
Query: 70 HDALMNAITDLLAELSLFEERF 91
+A NAITDL++ELSL EERF
Sbjct: 66 QEAFTNAITDLISELSLLEERF 87
>gi|113931298|ref|NP_001039095.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
(Silurana) tropicalis]
gi|89268974|emb|CAJ83522.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
(Silurana) tropicalis]
Length = 117
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHT+GN+I++QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 17 KKITITKDTKVPNACLFTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|348540573|ref|XP_003457762.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Oreochromis niloticus]
Length = 117
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 74/89 (83%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+IR QLLKDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 17 KKISISKDTKVPNACLFTLNKEDHTLGNIIRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|449265930|gb|EMC77057.1| DNA-directed RNA polymerase II subunit RPB11-a, partial [Columba
livia]
Length = 90
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 72/82 (87%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P
Sbjct: 7 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSP 66
Query: 70 HDALMNAITDLLAELSLFEERF 91
+A NAITDL++ELSL EERF
Sbjct: 67 QEAFTNAITDLISELSLLEERF 88
>gi|332634984|ref|NP_001091084.2| DNA-directed RNA polymerase II subunit RPB11-b2 [Homo sapiens]
gi|74725005|sp|Q9GZM3.1|RPB1B_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b1;
Short=RNA polymerase II subunit B11-b1; Short=RPB11b1;
AltName: Full=DNA-directed RNA polymerase II subunit J2
gi|11595474|emb|CAC18329.1| RPB11b1alpha protein [Homo sapiens]
gi|11595483|emb|CAC18332.1| RPB11b1alpha protein [Homo sapiens]
Length = 115
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 74/88 (84%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QT
Sbjct: 17 KITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + +P +A NAITDL++ELSL EERF
Sbjct: 77 TPDYSPQEAFTNAITDLISELSLLEERF 104
>gi|281337679|gb|EFB13263.1| hypothetical protein PANDA_015431 [Ailuropoda melanoleuca]
Length = 97
Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 72/82 (87%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P
Sbjct: 14 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSP 73
Query: 70 HDALMNAITDLLAELSLFEERF 91
+A NAITDL++ELSL EERF
Sbjct: 74 QEAFTNAITDLISELSLLEERF 95
>gi|410926916|ref|XP_003976914.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Takifugu rubripes]
Length = 117
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 74/89 (83%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+IR QLLKDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 17 KKISINKDTKVPNACLFTLNKEDHTLGNIIRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|147902930|ref|NP_001088910.1| polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa [Xenopus
laevis]
gi|56788744|gb|AAH88797.1| LOC496260 protein [Xenopus laevis]
Length = 117
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHT+GN+I++QLLKDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 17 KKITITKDTKVPNACLFTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|19401711|gb|AAL87672.1|AF468111_1 DNA-directed RNA polymerase II subunit 11 [Homo sapiens]
Length = 158
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 74/88 (84%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QT
Sbjct: 17 KITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + +P +A NAITDL++ELSL EERF
Sbjct: 77 TPDYSPQEAFTNAITDLISELSLLEERF 104
>gi|209737046|gb|ACI69392.1| DNA-directed RNA polymerase II subunit RPB11-a [Salmo salar]
gi|221219392|gb|ACM08357.1| DNA-directed RNA polymerase II subunit RPB11-a [Salmo salar]
gi|225704470|gb|ACO08081.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
gi|225714848|gb|ACO13270.1| DNA-directed RNA polymerase II subunit RPB11-a [Esox lucius]
Length = 117
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 74/89 (83%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+IR QLLKDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 17 KKITIIKDTKVPNACLFTLNKEDHTLGNIIRQQLLKDPQVLFAGYKVPHPLEHKIVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|225708058|gb|ACO09875.1| DNA-directed RNA polymerase II subunit J [Osmerus mordax]
Length = 117
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT++KEDHTLGN+IR+QLLKDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 17 KKITITKDTKVPNACLFTLSKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|62088376|dbj|BAD92635.1| MGC13098 protein variant [Homo sapiens]
Length = 180
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 73/88 (82%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QT
Sbjct: 39 KITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 98
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + +P +A NAITDL+ ELSL EERF
Sbjct: 99 TPDYSPQEAFTNAITDLIRELSLLEERF 126
>gi|74177357|dbj|BAE34581.1| unnamed protein product [Mus musculus]
Length = 117
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 74/89 (83%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLF GYK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFVGYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|74725032|sp|Q9H1A7.1|RPB1C_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB11-b2;
Short=RNA polymerase II subunit B11-b2; Short=RPB11b2;
AltName: Full=DNA-directed RNA polymerase II subunit J3
gi|11595478|emb|CAC18331.1| RPB11b2alpha protein [Homo sapiens]
gi|30172701|gb|AAP22342.1| unknown [Homo sapiens]
gi|162318032|gb|AAI56864.1| Polymerase (RNA) II (DNA directed) polypeptide J3 [synthetic
construct]
Length = 115
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 74/88 (84%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QT
Sbjct: 17 KITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + +P +A NAITDL++ELSL EERF
Sbjct: 77 TPDYSPQEAFTNAITDLISELSLLEERF 104
>gi|47211212|emb|CAF90169.1| unnamed protein product [Tetraodon nigroviridis]
Length = 117
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 74/89 (83%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+IR QL+KDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 17 KKISINKDTKVPNACLFTLNKEDHTLGNIIRAQLMKDPQVLFAGYKVPHPLEHKIVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|168277626|dbj|BAG10791.1| RPB11b2 protein [synthetic construct]
Length = 158
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 73/88 (82%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QT
Sbjct: 17 KITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + +P +A NAITDL+ ELSL EERF
Sbjct: 77 TPDYSPQEAFTNAITDLIRELSLLEERF 104
>gi|349804759|gb|AEQ17852.1| putative polymerase ii (dna directed) polypeptide [Hymenochirus
curtipes]
Length = 99
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 71/82 (86%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNA +FT+NKEDHT+GN+I++QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P
Sbjct: 6 DTKVPNACLFTINKEDHTIGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSP 65
Query: 70 HDALMNAITDLLAELSLFEERF 91
+A NAITDLL+ELSL EER
Sbjct: 66 QEAFTNAITDLLSELSLIEERL 87
>gi|62739171|ref|NP_116581.3| DNA-directed RNA polymerase II subunit RPB11-b1 [Homo sapiens]
Length = 115
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 73/88 (82%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI DTKVP A +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QT
Sbjct: 17 KITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + +P +A NAITDL++ELSL EERF
Sbjct: 77 TPDYSPQEAFTNAITDLISELSLLEERF 104
>gi|410059467|ref|XP_003949277.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
3 [Pan troglodytes]
Length = 144
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 73/89 (82%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKV NA +FT+NKEDHTLGN+I+ QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVSNACLFTINKEDHTLGNIIKTQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|332867975|ref|XP_003339459.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
1 [Pan troglodytes]
gi|332867977|ref|XP_003339460.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-b1 isoform
2 [Pan troglodytes]
Length = 116
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 73/89 (82%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKV NA +FT+NKEDHTLGN+I+ QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVSNACLFTINKEDHTLGNIIKTQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|17536663|ref|NP_496942.1| Protein RPB-11 [Caenorhabditis elegans]
gi|11387118|sp|Q9XVH6.1|RPB11_CAEEL RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|3924901|emb|CAB03455.1| Protein RPB-11 [Caenorhabditis elegans]
Length = 122
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 71/88 (80%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K E DTKVPNAAIFT+ KEDHTLGNM++ QLLKDP VLFAGYK PHPLEHK +LRIQ
Sbjct: 16 KKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQ 75
Query: 63 TTAESTPHDALMNAITDLLAELSLFEER 90
TT +TP DAL AITDL+ ELSL E R
Sbjct: 76 TTNNTTPADALTTAITDLVGELSLLEHR 103
>gi|339522065|gb|AEJ84197.1| DNA-directed RNA polymerase II subunit J-1 [Capra hircus]
Length = 117
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 70/81 (86%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHP EHK I+R+QTT + +P
Sbjct: 24 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPWEHKIIIRVQTTPDYSP 83
Query: 70 HDALMNAITDLLAELSLFEER 90
+A NAITDL++ELSL EER
Sbjct: 84 QEAFTNAITDLISELSLLEER 104
>gi|238231721|ref|NP_001154047.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
gi|225703638|gb|ACO07665.1| DNA-directed RNA polymerase II subunit J [Oncorhynchus mykiss]
Length = 117
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 73/89 (82%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I+ QLLKDP VLFAGYK PHPLEHK ++R+Q
Sbjct: 17 KKITIIKDTKVPNACLFTLNKEDHTLGNIIKQQLLKDPQVLFAGYKVPHPLEHKTVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A N ITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNVITDLISELSLLEERF 105
>gi|156372989|ref|XP_001629317.1| predicted protein [Nematostella vectensis]
gi|156216314|gb|EDO37254.1| predicted protein [Nematostella vectensis]
Length = 117
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 74/89 (83%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNAA F VNKEDHTLGN++R QLLKDP V+FAGYK HPLEHKF+LR+Q
Sbjct: 17 KKITITKDTKVPNAAHFVVNKEDHTLGNLLREQLLKDPQVIFAGYKVSHPLEHKFVLRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++ +P +A +AITDL++E+SL EERF
Sbjct: 77 TTSDYSPQEAFTHAITDLISEVSLLEERF 105
>gi|449675933|ref|XP_004208520.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Hydra
magnipapillata]
Length = 117
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 71/82 (86%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNAA FTV KEDHTLGN+IR+QLLKDP V+FAGY+ PHPLEHKF +RIQTT + +P
Sbjct: 24 DTKVPNAAHFTVMKEDHTLGNLIRSQLLKDPQVIFAGYRVPHPLEHKFNVRIQTTPDYSP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+A +AITDLL+E+SL EERF
Sbjct: 84 QEAFTSAITDLLSEISLLEERF 105
>gi|149641980|ref|XP_001514119.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Ornithorhynchus anatinus]
Length = 117
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 72/89 (80%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VL YK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLLQEYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>gi|340377747|ref|XP_003387390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Amphimedon queenslandica]
Length = 117
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 74/89 (83%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNAAIFTV KEDHTLGN++ +QLL DP VLF+GYK PHPLEHKF+LRIQ
Sbjct: 17 KKITVTKDTKVPNAAIFTVFKEDHTLGNLLMHQLLNDPQVLFSGYKVPHPLEHKFVLRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TTA+ +P +AL NA+TDL++E++ E RF
Sbjct: 77 TTADYSPQEALSNALTDLISEVTKIETRF 105
>gi|405967595|gb|EKC32736.1| DNA-directed RNA polymerase II subunit RPB11-a [Crassostrea gigas]
Length = 156
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 76/127 (59%), Gaps = 38/127 (29%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRN---------------------------- 34
+KI E DTKVPNAAIFTVNKEDHTLGNMI
Sbjct: 17 KKITIEKDTKVPNAAIFTVNKEDHTLGNMITARTDTVRTASRANGPRANENQSEQRQGQT 76
Query: 35 ----------QLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAEL 84
QL KDP VLFAGYK PHPLEHKF+LR+QTT++ +P +A+ +AITDL++E
Sbjct: 77 RFRANEQPIIQLRKDPQVLFAGYKNPHPLEHKFVLRVQTTSDYSPQEAITHAITDLISEF 136
Query: 85 SLFEERF 91
SL EERF
Sbjct: 137 SLLEERF 143
>gi|327287597|ref|XP_003228515.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Anolis carolinensis]
Length = 117
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +TKVPNA +FT+NKEDHTLGN+I+ QLL+DP VLFAGYK HPLEHK I+ +Q
Sbjct: 17 KKIAINKNTKVPNACLFTINKEDHTLGNVIKLQLLEDPQVLFAGYKVLHPLEHKIIIWVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A +AITDL++ELS+ EERF
Sbjct: 77 TTPDYSPQEAFTDAITDLISELSILEERF 105
>gi|311259036|ref|XP_003127906.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like [Sus
scrofa]
Length = 140
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 70/89 (78%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
KI DTK PNA +FT++KEDHTLGN+I++QLLKDP VLFAG + PHP EHK I+ +Q
Sbjct: 16 EKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQ 75
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + TP +AL+N ITDL+++LSL EER
Sbjct: 76 TTPDYTPQEALLNVITDLISKLSLLEERL 104
>gi|358332944|dbj|GAA51526.1| DNA-directed RNA polymerase II subunit RPB11 [Clonorchis sinensis]
Length = 177
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 73/91 (80%)
Query: 1 MIRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILR 60
++ +I E DT+VPNAAIFT+N+EDHT+GNM+ QLLKDP VLFAGYK PHPLEHK ++R
Sbjct: 28 LLDRISFEKDTQVPNAAIFTLNREDHTVGNMLTCQLLKDPRVLFAGYKAPHPLEHKIVIR 87
Query: 61 IQTTAESTPHDALMNAITDLLAELSLFEERF 91
+QT +TP D ++A+ DL++E+S EE+F
Sbjct: 88 VQTLPPTTPLDVFISALKDLVSEVSNIEEQF 118
>gi|256078288|ref|XP_002575428.1| DNA-directed rna polymerase II 13.3 kD polypeptide [Schistosoma
mansoni]
gi|226489581|emb|CAX74941.1| hypotherical protein [Schistosoma japonicum]
gi|226489583|emb|CAX74942.1| hypotherical protein [Schistosoma japonicum]
gi|226489585|emb|CAX74943.1| hypotherical protein [Schistosoma japonicum]
gi|360043356|emb|CCD78769.1| putative dna-directed rna polymerase II 13.3 kD polypeptide
[Schistosoma mansoni]
Length = 110
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 71/89 (79%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI E DT+VPNAAIFT+N+EDHT+GNMI QLLKDP VLFAGYK PHPLEHK ++R+
Sbjct: 17 KKISFEKDTQVPNAAIFTLNREDHTVGNMITCQLLKDPRVLFAGYKAPHPLEHKIVIRVH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T +TP D ++A+ DL++E+S EE+F
Sbjct: 77 TAHPATPVDVFVSALKDLISEISNIEEQF 105
>gi|196012022|ref|XP_002115874.1| hypothetical protein TRIADDRAFT_59743 [Trichoplax adhaerens]
gi|190581650|gb|EDV21726.1| hypothetical protein TRIADDRAFT_59743 [Trichoplax adhaerens]
Length = 116
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 71/89 (79%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA FT+ KEDHTLGN+IR QLLKDP V+FAGYK PHPLE+ ++R+Q
Sbjct: 17 KKITITKDTKVPNACHFTIAKEDHTLGNIIRAQLLKDPQVIFAGYKVPHPLEYDVVIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT+ +P +A NA+TDL++EL++ ++RF
Sbjct: 77 TTSNYSPEEAFSNALTDLISELNVLDDRF 105
>gi|745556|prf||2016335A RNA polymerase II:SUBUNIT=14kD
Length = 113
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 61/70 (87%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P
Sbjct: 23 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSP 82
Query: 70 HDALMNAITD 79
+A NAITD
Sbjct: 83 QEAFTNAITD 92
>gi|328771902|gb|EGF81941.1| hypothetical protein BATDEDRAFT_23695 [Batrachochytrium
dendrobatidis JAM81]
Length = 125
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 69/85 (81%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
++KI E+DTK+PNAA FTV KEDHTLGN++R QLLK+P V+FAGYK PHPLEH+FIL+I
Sbjct: 17 MKKISMEMDTKIPNAATFTVLKEDHTLGNILRMQLLKNPKVIFAGYKVPHPLEHQFILKI 76
Query: 62 QTTAESTPHDALMNAITDLLAELSL 86
QTT ++TP D L + +L+ E +L
Sbjct: 77 QTTPDTTPADVLQQEVANLIQENAL 101
>gi|384486353|gb|EIE78533.1| hypothetical protein RO3G_03237 [Rhizopus delemar RA 99-880]
Length = 145
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 70/89 (78%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+DTK+PNAA F V +EDHTLGNM+R QLLKDP VLFAGYK PHPLEH FI+++Q
Sbjct: 17 KKVEMEVDTKIPNAATFIVEREDHTLGNMLRGQLLKDPRVLFAGYKVPHPLEHNFIIKVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
+ ++P AL +A ++L++E++ + +F
Sbjct: 77 SVPGTSPGKALKDATSELISEINALKNKF 105
>gi|156054532|ref|XP_001593192.1| hypothetical protein SS1G_06114 [Sclerotinia sclerotiorum 1980]
gi|154703894|gb|EDO03633.1| hypothetical protein SS1G_06114 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 124
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K +E DT+ PN++IFT NKEDHTL NM+R LLKDPHV+F+GYK PHPL KF LRIQ
Sbjct: 18 KKCTEEADTRTPNSSIFTFNKEDHTLANMLRAHLLKDPHVIFSGYKIPHPLFSKFELRIQ 77
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T E TP +AL+ +L++EL +F F
Sbjct: 78 TDGEITPKEALVACCRNLVSELEVFSREF 106
>gi|303316247|ref|XP_003068128.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240107804|gb|EER25983.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|320032518|gb|EFW14471.1| DNA-directed RNA polymerase II [Coccidioides posadasii str.
Silveira]
Length = 128
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 64/89 (71%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DT+VP+ AIFT NKEDHTLGN+IR+QLLK HV FAGYK PHPL HKFILR+Q
Sbjct: 17 KKVEMETDTRVPSTAIFTFNKEDHTLGNLIRSQLLKSQHVQFAGYKVPHPLVHKFILRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP DA++ A +L+ +L F
Sbjct: 77 TDGAITPKDAVLTACHELVKDLGTLSREF 105
>gi|347830775|emb|CCD46472.1| similar to DNA-directed RNA polymerase II subunit RPB11
[Botryotinia fuckeliana]
Length = 125
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K +E DT+ PN+++FT NKEDHTL NM+R LLKDPHV+F+GYK PHPL KF LRIQ
Sbjct: 18 KKCTEEADTRTPNSSVFTFNKEDHTLANMLRAHLLKDPHVIFSGYKIPHPLFSKFELRIQ 77
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T E TP +AL+ +L++EL +F F
Sbjct: 78 TDGEITPKEALVACCRNLVSELEVFSREF 106
>gi|320168334|gb|EFW45233.1| RNA polymerase II subunit [Capsaspora owczarzaki ATCC 30864]
Length = 121
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 68/89 (76%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RKI+ D++ P+AA+ TVNKEDHTLGN++R QLL+DP VLF+GY PHPL+ KF+LR+
Sbjct: 17 RKIVCVRDSRNPSAAVITVNKEDHTLGNLLRVQLLRDPKVLFSGYHVPHPLQSKFVLRVL 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T +P +A+ A DL++E+SL EERF
Sbjct: 77 TVEGYSPIEAVSGAFNDLISEMSLLEERF 105
>gi|119176958|ref|XP_001240328.1| DNA-directed RNA polymerase II [Coccidioides immitis RS]
gi|392867711|gb|EAS29036.2| DNA-directed RNA polymerase II [Coccidioides immitis RS]
Length = 128
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 63/89 (70%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DT+VP+ AIFT NKEDHTLGN+IR QLLK HV FAGYK PHPL HKFILR+Q
Sbjct: 17 KKVEMETDTRVPSTAIFTFNKEDHTLGNLIRAQLLKSQHVQFAGYKVPHPLVHKFILRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP DA++ A +L+ +L F
Sbjct: 77 TDGAITPKDAVLTACHELVKDLGTLSREF 105
>gi|296805491|ref|XP_002843570.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma otae CBS
113480]
gi|238844872|gb|EEQ34534.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma otae CBS
113480]
Length = 161
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 66/89 (74%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+DT+VP+ AIFT NKEDHTLGNMIR +LL+ HVLFAGYK PHPL HK +LR+Q
Sbjct: 50 KKVEIEVDTRVPSTAIFTFNKEDHTLGNMIRARLLQSQHVLFAGYKIPHPLVHKVLLRVQ 109
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + TP DA++ A +L+ +L F F
Sbjct: 110 TDGQITPKDAVLTACHELVKDLGTFSREF 138
>gi|326472986|gb|EGD96995.1| DNA-directed RNA polymerase II [Trichophyton tonsurans CBS 112818]
gi|326477317|gb|EGE01327.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 160
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 69/89 (77%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+DT+VP+ AIFT NKEDHTLGN+IR++LL++ HVLF+GY+ PHPL HK +LR+Q
Sbjct: 49 KKVEVEIDTRVPSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPHPLVHKVLLRVQ 108
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + TP +A++ A DL+ +L +F F
Sbjct: 109 TDGQITPKEAVLAACHDLVKDLGIFSREF 137
>gi|327304679|ref|XP_003237031.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
gi|326460029|gb|EGD85482.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
Length = 160
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 69/89 (77%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+DT+VP+ AIFT NKEDHTLGN+IR++LL++ HVLF+GY+ PHPL HK +LR+Q
Sbjct: 49 KKVEVEVDTRVPSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPHPLVHKVLLRVQ 108
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + TP +A++ A DL+ +L +F F
Sbjct: 109 TDGQITPKEAVLAACHDLVKDLGIFSREF 137
>gi|121711221|ref|XP_001273226.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus clavatus NRRL 1]
gi|119401377|gb|EAW11800.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus clavatus NRRL 1]
Length = 165
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 65/88 (73%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ + DT++P+ AIFT NKEDHTLGN++R++LL+ PHVLFAGYK PHPL KF LRIQT
Sbjct: 54 KVEVQTDTRIPSTAIFTFNKEDHTLGNLLRSRLLQSPHVLFAGYKIPHPLVPKFELRIQT 113
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E TP DAL+ A DL+ +L + F
Sbjct: 114 DGEVTPKDALLAACHDLVKDLGILSREF 141
>gi|313229045|emb|CBY18197.1| unnamed protein product [Oikopleura dioica]
Length = 119
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 73/89 (82%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI + + VP+A +FT+NKEDHTLGN+++ QLL+DP VLFAGYK PHPLE+K I+R+Q
Sbjct: 17 KKIEVKKEVNVPDACLFTLNKEDHTLGNILKTQLLRDPKVLFAGYKNPHPLENKVIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + TP DA NAITDLL+ELSL EERF
Sbjct: 77 TTKDYTPQDAFTNAITDLLSELSLLEERF 105
>gi|258564550|ref|XP_002583020.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237908527|gb|EEP82928.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 125
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 64/89 (71%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DT++P+ AIFT NKEDHTLGN+IR+QLLK HV FAGYK PHPL HKF+LR+Q
Sbjct: 14 KKVEMEPDTRLPSTAIFTFNKEDHTLGNLIRSQLLKSQHVQFAGYKVPHPLVHKFMLRVQ 73
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP DA++ A +L+ +L F
Sbjct: 74 TDGTITPKDAVLTACHELVKDLGTLSREF 102
>gi|440794029|gb|ELR15200.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 122
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 66/89 (74%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTK+ NAA F + KEDHT+GN++R QLL DP V+FAGYK PHPL+H ++++Q
Sbjct: 17 KKISYLPDTKIQNAATFNIEKEDHTIGNLLRMQLLSDPDVVFAGYKVPHPLKHTTVIKVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T S+P A+ NA+TDLL+E +L ERF
Sbjct: 77 TNHNSSPVAAMTNALTDLLSEFNLLSERF 105
>gi|225682162|gb|EEH20446.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226289350|gb|EEH44862.1| DNA-directed RNA polymerase II [Paracoccidioides brasiliensis Pb18]
Length = 128
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+DT+VP+ AIFT NKEDHTLGNMIR++LL HVLF+GYK PHPL KFILR+Q
Sbjct: 17 KKVEVEVDTRVPSTAIFTFNKEDHTLGNMIRSRLLNSSHVLFSGYKVPHPLIPKFILRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + TP +A++ A +L+ +L F
Sbjct: 77 TDGQITPKEAVITACHELVKDLGALSREF 105
>gi|119482558|ref|XP_001261307.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Neosartorya fischeri NRRL 181]
gi|119409462|gb|EAW19410.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Neosartorya fischeri NRRL 181]
Length = 167
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 66/88 (75%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E DT++P+++IFT NKEDHTLGN++R++LL++ HV+FAGYK PHPL KF LR+QT
Sbjct: 56 KVEVEADTRIPSSSIFTFNKEDHTLGNLLRSRLLQNSHVIFAGYKVPHPLVPKFELRVQT 115
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E TP DAL+ A DL+ +L + F
Sbjct: 116 DGEITPKDALLAACHDLVKDLGILSREF 143
>gi|295661939|ref|XP_002791524.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226280081|gb|EEH35647.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 169
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+DT+VP+ AIFT NKEDHTLGNMIR++LL HVLF+GYK PHPL KFILR+Q
Sbjct: 57 KKVEVEVDTRVPSTAIFTFNKEDHTLGNMIRSRLLNSSHVLFSGYKVPHPLIPKFILRVQ 116
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + TP +A++ A +L+ +L F
Sbjct: 117 TDGQITPKEAVITACHELVKDLGALSREF 145
>gi|315045778|ref|XP_003172264.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma gypseum
CBS 118893]
gi|311342650|gb|EFR01853.1| DNA-directed RNA polymerase II subunit RPB11 [Arthroderma gypseum
CBS 118893]
Length = 161
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 66/89 (74%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DT+VP+ AIFT NKEDHTLGN+IR++L ++ HVLF+ YK PHPL HK +LR+Q
Sbjct: 50 KKVEVETDTRVPSTAIFTFNKEDHTLGNLIRSRLFQNQHVLFSAYKIPHPLVHKVLLRVQ 109
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + TP +A++ A DL+ +L +F F
Sbjct: 110 TDGQITPKEAVLAACHDLVKDLGIFSREF 138
>gi|146324809|ref|XP_749122.2| DNA-directed RNA polymerase II subunit RPB11a [Aspergillus
fumigatus Af293]
gi|129556648|gb|EAL87084.2| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus fumigatus Af293]
Length = 167
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 66/88 (75%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E DT++P+++IFT NKEDHTLGN++R++LL++ HV+FAGYK PHPL KF LR+QT
Sbjct: 56 KVEIETDTRIPSSSIFTFNKEDHTLGNLLRSRLLQNSHVIFAGYKVPHPLVPKFELRVQT 115
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E TP DAL+ A DL+ +L + F
Sbjct: 116 DGEITPKDALLAACHDLVKDLGILSREF 143
>gi|345567881|gb|EGX50783.1| hypothetical protein AOL_s00054g869 [Arthrobotrys oligospora ATCC
24927]
Length = 192
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/88 (55%), Positives = 63/88 (71%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ +T+VPN FT NKEDHTLGN++R+QLLKDP VLFAGYK PHPL F LR+QT
Sbjct: 88 KVTAVDETRVPNCVTFTFNKEDHTLGNLLRSQLLKDPKVLFAGYKVPHPLFPSFELRVQT 147
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T E+ P A++ A DL+ +L++F F
Sbjct: 148 TDETNPRAAVIKAAQDLIKDLTIFRNNF 175
>gi|226504996|ref|NP_001142057.1| uncharacterized protein LOC100274213 [Zea mays]
gi|194696560|gb|ACF82364.1| unknown [Zea mays]
gi|194699868|gb|ACF84018.1| unknown [Zea mays]
gi|194706942|gb|ACF87555.1| unknown [Zea mays]
gi|195615212|gb|ACG29436.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|195628620|gb|ACG36140.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|195656859|gb|ACG47897.1| DNA-directed RNA polymerase II subunit J [Zea mays]
gi|413937791|gb|AFW72342.1| DNA-directed RNA polymerase II subunit J isoform 1 [Zea mays]
gi|413937792|gb|AFW72343.1| DNA-directed RNA polymerase II subunit J isoform 2 [Zea mays]
gi|413937793|gb|AFW72344.1| DNA-directed RNA polymerase II subunit J isoform 3 [Zea mays]
gi|413937794|gb|AFW72345.1| DNA-directed RNA polymerase II subunit J isoform 4 [Zea mays]
gi|413937795|gb|AFW72346.1| DNA-directed RNA polymerase II subunit J isoform 5 [Zea mays]
Length = 120
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 66/89 (74%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FTV +EDHT+GN++R QL +DP+VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A AI DL EL ++ F
Sbjct: 77 TTSQSSPTQAYTQAINDLDKELEYLKQAF 105
>gi|449295408|gb|EMC91430.1| hypothetical protein BAUCODRAFT_127330 [Baudoinia compniacensis
UAMH 10762]
Length = 122
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E++T+VPNAA+FT NKEDHTLGN++R +L K PHVLFA Y+ PHPL F LR+Q
Sbjct: 17 KKVTFEIETRVPNAALFTFNKEDHTLGNLLRAKLTKSPHVLFAAYQVPHPLFAVFKLRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T E +P +A++ A DL+ EL ++ F
Sbjct: 77 TDGEISPKEAVVQACNDLVKELQTLDQEF 105
>gi|326435884|gb|EGD81454.1| DNA-directed RNA polymerase II subunit J [Salpingoeca sp. ATCC
50818]
Length = 202
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 63/89 (70%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ DTKVPNA F +N+EDHTLGNM+ +QL +DP VLF+GY+ PHPLEH +LRIQ
Sbjct: 17 QKVTYTPDTKVPNAGTFRINREDHTLGNMLASQLRRDPRVLFSGYRCPHPLEHHLLLRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +AL A+ D A+++ F
Sbjct: 77 TTPDYSPKEALKTALADCRADITRMTHEF 105
>gi|154275934|ref|XP_001538812.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150413885|gb|EDN09250.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 168
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+DT++P+ AIFT NKEDHTLGNMIR++L+ HVLF+GYK PHPL KFILR+Q
Sbjct: 57 KKVEVEVDTRIPSTAIFTFNKEDHTLGNMIRSRLITSSHVLFSGYKVPHPLVPKFILRVQ 116
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + TP +A++ A +L+ +L F
Sbjct: 117 TDGQITPKEAVITACHELVKDLGSLSREF 145
>gi|225556050|gb|EEH04340.1| polymerase II polypeptide J [Ajellomyces capsulatus G186AR]
gi|240278457|gb|EER41963.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H143]
gi|325090627|gb|EGC43937.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H88]
Length = 168
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+DT++P+ AIFT NKEDHTLGNMIR++L+ HVLF+GYK PHPL KFILR+Q
Sbjct: 57 KKVEVEVDTRIPSTAIFTFNKEDHTLGNMIRSRLITSSHVLFSGYKVPHPLVPKFILRVQ 116
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + TP +A++ A +L+ +L F
Sbjct: 117 TDGQITPKEAVITACHELVKDLGSLSREF 145
>gi|242075042|ref|XP_002447457.1| hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
gi|241938640|gb|EES11785.1| hypothetical protein SORBIDRAFT_06g001360 [Sorghum bicolor]
Length = 117
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 66/89 (74%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT+ +EDHT+GN++R QL +DP+VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIVNAASFTIEREDHTIGNIVRMQLHRDPNVLFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A A+ DL EL ++ F
Sbjct: 77 TTSQSSPTQAYSQAVNDLDKELEYLKQAF 105
>gi|413937790|gb|AFW72341.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
Length = 112
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 66/89 (74%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FTV +EDHT+GN++R QL +DP+VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A AI DL EL ++ F
Sbjct: 77 TTSQSSPTQAYTQAINDLDKELEYLKQAF 105
>gi|67528118|ref|XP_661873.1| hypothetical protein AN4269.2 [Aspergillus nidulans FGSC A4]
gi|40739747|gb|EAA58937.1| hypothetical protein AN4269.2 [Aspergillus nidulans FGSC A4]
gi|259481116|tpe|CBF74353.1| TPA: DNA-directed RNA polymerase II subunit RPB11a, putative
(AFU_orthologue; AFUA_7G03860) [Aspergillus nidulans
FGSC A4]
Length = 129
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 65/88 (73%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E+DT++P++AIFT NKEDHTLGN+IR++LL+ HVLFA YK PHPL KFILR+QT
Sbjct: 18 KVEMEIDTRIPSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPKFILRVQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ +P A++ A +L+ +L + F
Sbjct: 78 DGDISPKQAVITACNELVRDLGILSREF 105
>gi|168000755|ref|XP_001753081.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695780|gb|EDQ82122.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 117
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 65/83 (78%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
++K+ E D KV NAA FTV +EDHT+GN+IR QL +DP VLFAGY+ PHPL+++ +++I
Sbjct: 16 MKKVAYERDMKVMNAATFTVEREDHTVGNVIRMQLHRDPSVLFAGYRLPHPLQYRLVVKI 75
Query: 62 QTTAESTPHDALMNAITDLLAEL 84
QTT++S+P A AITDL+ EL
Sbjct: 76 QTTSQSSPMQAYNLAITDLIKEL 98
>gi|453082047|gb|EMF10095.1| RBP11-like subunits of RNA polymerase [Mycosphaerella populorum
SO2202]
Length = 121
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E +T+VPNA++FT NKEDHTLGN++R +L K HVLFAGY+ PHPL F LR+Q
Sbjct: 17 KKVEHEPETRVPNASMFTFNKEDHTLGNLLRAKLAKADHVLFAGYQVPHPLFATFKLRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T E TP +A++NA DL+ EL ++ F
Sbjct: 77 TDGEITPKEAVVNACQDLVKELGQLDQEF 105
>gi|217070988|gb|ACJ83854.1| unknown [Medicago truncatula]
gi|388519401|gb|AFK47762.1| unknown [Medicago truncatula]
Length = 116
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT+ +EDHT+GN++R QL KDP+VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVAYERDTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A +I DL EL + F
Sbjct: 77 TTSQSSPMQAYNQSINDLDKELDTLKSGF 105
>gi|261200199|ref|XP_002626500.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239593572|gb|EEQ76153.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607549|gb|EEQ84536.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327352540|gb|EGE81397.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 128
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+DT++P+ AIFT +KEDHTLGNMIR++L+ HVLF+GYK PHPL KFILR+Q
Sbjct: 17 KKVEVEVDTRIPSTAIFTFHKEDHTLGNMIRSRLINSSHVLFSGYKVPHPLVPKFILRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + TP +A++ A +L+ +L F
Sbjct: 77 TDGQITPKEAVITACHELVKDLGSLSREF 105
>gi|169775525|ref|XP_001822230.1| DNA-directed RNA polymerase II subunit RPB11 [Aspergillus oryzae
RIB40]
gi|238495811|ref|XP_002379141.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus flavus NRRL3357]
gi|83770093|dbj|BAE60228.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694021|gb|EED50365.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus flavus NRRL3357]
gi|391874196|gb|EIT83118.1| RNA polymerase, subunit L [Aspergillus oryzae 3.042]
Length = 129
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 65/88 (73%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E+DT++P++AIFT NKEDHTLGN+IR++LL+ HVLFA YK PHPL KF LR+QT
Sbjct: 18 KVEMEIDTRIPSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPKFELRVQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E TP +A++ A +L+ +L + F
Sbjct: 78 DGEITPKEAVIAACHELVRDLGILSREF 105
>gi|395862822|ref|XP_003803624.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB11-b1-like [Otolemur garnettii]
Length = 154
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 66/93 (70%), Gaps = 4/93 (4%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPH----VLFAGYKQPHPLEHKFI 58
+KI DTK PNA +FT+NKEDHTLGN+I++ L DP +LFAGYK PHPLEHK
Sbjct: 39 KKIPVNKDTKEPNACLFTINKEDHTLGNIIKSASLXDPKSDTXLLFAGYKIPHPLEHKIN 98
Query: 59 LRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
+ +QTT + + +A +AITDL+ ELS EERF
Sbjct: 99 IXVQTTPDYSLQEAFTSAITDLINELSQLEERF 131
>gi|242047078|ref|XP_002461285.1| hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
gi|241924662|gb|EER97806.1| hypothetical protein SORBIDRAFT_02g000210 [Sorghum bicolor]
Length = 120
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FTV +EDHT+GN++R QL +DP+VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T ++S+P A A+ DL EL ++ F
Sbjct: 77 TMSQSSPTQAYSQAVNDLDKELEYLKQAF 105
>gi|167525603|ref|XP_001747136.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774431|gb|EDQ88060.1| predicted protein [Monosiga brevicollis MX1]
Length = 119
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 63/82 (76%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI E D+KVPNA F +N+EDHT+GN++ +QL KDP VLFAGYK PHPLEH +LR+ T
Sbjct: 18 KITYEPDSKVPNAGTFRMNREDHTVGNLLASQLAKDPRVLFAGYKVPHPLEHYILLRVHT 77
Query: 64 TAESTPHDALMNAITDLLAELS 85
TA+ +P +AL A+ D++ +++
Sbjct: 78 TAQYSPKEALKQALHDVIYDVA 99
>gi|145247839|ref|XP_001396168.1| DNA-directed RNA polymerase II subunit RPB11 [Aspergillus niger CBS
513.88]
gi|134080912|emb|CAK46429.1| unnamed protein product [Aspergillus niger]
Length = 129
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 64/88 (72%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E+DT++P++AIFT NKEDHTLGN+IR++LL+ HVLFA YK PHPL F LR+QT
Sbjct: 18 KVEMEIDTRIPSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPNFQLRVQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ TP DA++ A +L+ +L + F
Sbjct: 78 DGDITPKDAVIAACHELVRDLGILSREF 105
>gi|392589040|gb|EIW78371.1| RBP11-like subunits of RNA polymerase, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 133
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 59/82 (71%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA F + K+DHTLGNMIR Q+L P VLFAGYK PHPL+ F+L+IQT TP
Sbjct: 24 DTKIPNAATFKIVKQDHTLGNMIRAQVLSMPQVLFAGYKVPHPLQPYFLLKIQTDGSLTP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
AL A T L++ +S E++F
Sbjct: 84 QAALEQACTKLISTISTIEKKF 105
>gi|358373008|dbj|GAA89608.1| DNA-directed RNA polymerase II subunit RPB11a [Aspergillus kawachii
IFO 4308]
Length = 161
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 64/88 (72%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E+DT++P++AIFT NKEDHTLGN+IR++LL+ HVLFA YK PHPL F LR+QT
Sbjct: 50 KVEMEIDTRIPSSAIFTFNKEDHTLGNLIRSRLLQSSHVLFAAYKVPHPLVPNFQLRVQT 109
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ +P DA++ A +L+ +L + F
Sbjct: 110 DGDVSPKDAVIAACHELVRDLGILSREF 137
>gi|302501322|ref|XP_003012653.1| hypothetical protein ARB_00903 [Arthroderma benhamiae CBS 112371]
gi|291176213|gb|EFE32013.1| hypothetical protein ARB_00903 [Arthroderma benhamiae CBS 112371]
Length = 149
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 61/79 (77%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDA 72
VP+ AIFT NKEDHTLGN+IR++LL++ HVLF+GY+ PHPL HK +LR+QT + TP +A
Sbjct: 48 VPSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYRIPHPLVHKVLLRVQTDGQITPKEA 107
Query: 73 LMNAITDLLAELSLFEERF 91
++ A DL+ +L +F F
Sbjct: 108 VLAACHDLVKDLGIFSREF 126
>gi|398394339|ref|XP_003850628.1| hypothetical protein MYCGRDRAFT_105083 [Zymoseptoria tritici
IPO323]
gi|339470507|gb|EGP85604.1| hypothetical protein MYCGRDRAFT_105083 [Zymoseptoria tritici
IPO323]
Length = 121
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 66/89 (74%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ + +T+VPNAA+FT NKEDHTLGN++R +L K HVLFAGY+ PHPL +F LR+Q
Sbjct: 17 KKVEVDPETRVPNAAMFTFNKEDHTLGNLLRAKLAKAEHVLFAGYQVPHPLFAQFKLRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T E +P +A++ A +L+AEL ++ F
Sbjct: 77 TDGEVSPKEAVVQACKELVAELQSLDQEF 105
>gi|425766844|gb|EKV05438.1| hypothetical protein PDIP_82960 [Penicillium digitatum Pd1]
gi|425780180|gb|EKV18198.1| hypothetical protein PDIG_11460 [Penicillium digitatum PHI26]
Length = 127
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 63/88 (71%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI E+DT++P+AAIFT KEDHTLGNM+R++LLK HV+FA Y+ PHPL +F LRIQT
Sbjct: 18 KIDVEIDTRLPSAAIFTFRKEDHTLGNMLRHRLLKTAHVIFAAYRVPHPLTPEFQLRIQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E TP A++NA L+ +L + F
Sbjct: 78 DGEVTPRQAVINASEALIKDLGILSREF 105
>gi|357111228|ref|XP_003557416.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Brachypodium distachyon]
Length = 120
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT+ +EDHT+GN++R QL +DP+VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T ++S+P A I DL EL + ++ F
Sbjct: 77 TASQSSPTQAYTQGIDDLDKELEILKQAF 105
>gi|225430537|ref|XP_002285578.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis
vinifera]
gi|296082163|emb|CBI21168.3| unnamed protein product [Vitis vinifera]
Length = 116
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 64/89 (71%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FTV +EDHT+GN++R QL +D +VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIIRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A AI DL EL + F
Sbjct: 77 TTSQSSPMQAYNQAINDLDKELDYLKNAF 105
>gi|357159114|ref|XP_003578343.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 1 [Brachypodium distachyon]
gi|357159117|ref|XP_003578344.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
isoform 2 [Brachypodium distachyon]
Length = 119
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 66/89 (74%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT+ +EDHT+GN++R QL +DP+VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T ++S+P A AI DL +EL ++ F
Sbjct: 77 TASQSSPTQAYNQAINDLDSELENLKQAF 105
>gi|344233314|gb|EGV65187.1| RBP11-like subunits of RNA polymerase [Candida tenuis ATCC 10573]
gi|344233315|gb|EGV65188.1| hypothetical protein CANTEDRAFT_113704 [Candida tenuis ATCC 10573]
Length = 121
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 58/82 (70%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNAAI + KEDHTL N++R QLLKD VLFA YK HPL F+LRIQT TP
Sbjct: 24 DTKVPNAAIIKIEKEDHTLANLLRAQLLKDERVLFAAYKVEHPLFANFVLRIQTEDNYTP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL NA T+L+ EL L + +F
Sbjct: 84 KEALRNACTNLIGELDLIKNKF 105
>gi|19114245|ref|NP_593333.1| RNA polymerase II complex subunit Rpb11 [Schizosaccharomyces
pombe 972h-]
gi|3219850|sp|P87123.1|RPB11_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 14.1 kDa
polypeptide
gi|256599725|pdb|3H0G|K Chain K, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599737|pdb|3H0G|W Chain W, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2104423|emb|CAB08752.1| RNA polymerase II complex subunit Rpb11 [Schizosaccharomyces
pombe]
gi|2529239|dbj|BAA22801.1| RNA polymeraseII subunit Rpb11 [Schizosaccharomyces pombe]
gi|2529251|dbj|BAA22806.1| RNA polymerase II subunit Rpb11 [Schizosaccharomyces pombe]
gi|2708530|gb|AAB92517.1| Rpb11 [Schizosaccharomyces pombe]
Length = 123
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 57/81 (70%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ ELD+K PNAA+ T+ KEDHTL NM+ NQLL D VLFAGYK PHPL H FILR+QT
Sbjct: 17 KVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQT 76
Query: 64 TAESTPHDALMNAITDLLAEL 84
+ +P +++A L+ L
Sbjct: 77 VEDCSPKQVIVDAAKSLITHL 97
>gi|126137858|ref|XP_001385452.1| RNA polymerase II core subunit [Scheffersomyces stipitis CBS 6054]
gi|126092730|gb|ABN67423.1| RNA polymerase II core subunit [Scheffersomyces stipitis CBS 6054]
Length = 122
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 60/82 (73%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D+KVPNAAI + +EDHTL N++R QLLKDP VLFA YK HPL F+LRIQT + +P
Sbjct: 24 DSKVPNAAIIKIEREDHTLANLLRAQLLKDPRVLFAAYKVEHPLFANFVLRIQTEDDYSP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL NA + L++EL + + RF
Sbjct: 84 REALKNACSGLISELDVIKNRF 105
>gi|452980663|gb|EME80424.1| hypothetical protein MYCFIDRAFT_78162 [Pseudocercospora fijiensis
CIRAD86]
Length = 124
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ + +T+VPNAA+FT NKEDHTLGN++R +L K HVLFAGY+ PHPL F LR+Q
Sbjct: 17 KKVEVDPETRVPNAAMFTFNKEDHTLGNLLRAKLAKSEHVLFAGYQVPHPLFATFKLRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T E +P +A++NA +++ EL ++ F
Sbjct: 77 TDGEVSPKEAVVNACREVVKELGQLDQEF 105
>gi|213410391|ref|XP_002175965.1| DNA-directed RNA polymerase II complex subunit Rpb11
[Schizosaccharomyces japonicus yFS275]
gi|212004012|gb|EEB09672.1| DNA-directed RNA polymerase II complex subunit Rpb11
[Schizosaccharomyces japonicus yFS275]
Length = 123
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 59/88 (67%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ ELDTK PN A T+ KEDHTL NM+R QLL D V+FAGY+ PHPL H FILR+QT
Sbjct: 17 KVTYELDTKSPNTANITIEKEDHTLANMLRTQLLYDERVVFAGYRVPHPLNHNFILRVQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T E +P A+++A L+ L + F
Sbjct: 77 TEECSPKQAIIDASKSLITVLEQLKVNF 104
>gi|430814459|emb|CCJ28306.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1377
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP-LEHKFILRI 61
+K+ ++D KVPNAA TV EDHTLGNM+R QLL+D VLFAGY+ HP LEHKF+LR+
Sbjct: 1273 KKVTFDIDPKVPNAANITVLNEDHTLGNMLRAQLLQDERVLFAGYRVSHPILEHKFVLRV 1332
Query: 62 QTTAESTPHDALMNAITDLLAELSLFEERF 91
QT P DA+ NA DLL +L+ F
Sbjct: 1333 QTEEGYEPRDAVSNASRDLLYQLTQLRNNF 1362
>gi|255953613|ref|XP_002567559.1| Pc21g05130 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589270|emb|CAP95410.1| Pc21g05130 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 128
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 63/88 (71%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI E+DT++P+AAIFT +KEDHTLGNM+R +LLK HV+FA Y+ PHPL +F LR+QT
Sbjct: 18 KIDVEVDTRLPSAAIFTFHKEDHTLGNMLRQRLLKTAHVIFAAYRVPHPLTPEFQLRVQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E TP A++NA L+ +L + F
Sbjct: 78 DGEITPRQAVINASQALIKDLGILSREF 105
>gi|353241710|emb|CCA73506.1| related to DNA-directed RNA polymerase 13.3K chain [Piriformospora
indica DSM 11827]
Length = 138
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 59/82 (71%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA F + K+DHTL NMIR QLL+D +V+FAGYK PHPLE F+L++QT TP
Sbjct: 27 DTKIPNAATFRIYKQDHTLANMIRTQLLEDKNVIFAGYKVPHPLEPYFLLKVQTNGSLTP 86
Query: 70 HDALMNAITDLLAELSLFEERF 91
D + A ++A +S E+RF
Sbjct: 87 TDVVNTACASIIATVSQLEKRF 108
>gi|255553542|ref|XP_002517812.1| DNA-directed RNA polymerase II 13.6 kD polypeptide, putative
[Ricinus communis]
gi|223543084|gb|EEF44619.1| DNA-directed RNA polymerase II 13.6 kD polypeptide, putative
[Ricinus communis]
Length = 156
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 66/91 (72%), Gaps = 4/91 (4%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FTV +EDHT+GN++R QL +D +VLFAGY+ PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAGYRLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAEL----SLFEE 89
TT++S+P A AI DL EL S FEE
Sbjct: 77 TTSQSSPMQAYNQAINDLDKELDHLKSAFEE 107
>gi|50424419|ref|XP_460797.1| DEHA2F09944p [Debaryomyces hansenii CBS767]
gi|49656466|emb|CAG89138.1| DEHA2F09944p [Debaryomyces hansenii CBS767]
Length = 122
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 59/82 (71%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNAA+ + +EDHTLGN+IR QLLKD VLFA YK HPL F+LRIQT + +P
Sbjct: 24 DTKVPNAALIKIEREDHTLGNLIRAQLLKDERVLFAAYKVEHPLFANFVLRIQTEDDYSP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL NA + L+ EL + + RF
Sbjct: 84 REALRNACSGLIGELDVIKTRF 105
>gi|452837613|gb|EME39555.1| hypothetical protein DOTSEDRAFT_75275 [Dothistroma septosporum
NZE10]
Length = 121
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 64/88 (72%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI E +T+VPNAA+FT NKEDHTLGN++R +L+K HVLFAGY+ PHPL F LR+QT
Sbjct: 18 KIEVESETRVPNAAMFTFNKEDHTLGNLLRAKLVKSDHVLFAGYQVPHPLFATFKLRVQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
P +A++ A +L++EL F++ F
Sbjct: 78 DGVIQPKEAVVTACKELVSELQQFDQEF 105
>gi|116781365|gb|ABK22069.1| unknown [Picea sitchensis]
gi|116785114|gb|ABK23600.1| unknown [Picea sitchensis]
gi|116790373|gb|ABK25590.1| unknown [Picea sitchensis]
gi|224284720|gb|ACN40091.1| unknown [Picea sitchensis]
Length = 120
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 64/89 (71%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E D K+ NAA F + +EDHT+GN++R QL +DP+VLFAGYK PHPL++K +LRIQ
Sbjct: 17 KKVSYERDMKIMNAATFVIEREDHTIGNIVRMQLHRDPNVLFAGYKLPHPLQYKILLRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A AI DL EL + F
Sbjct: 77 TTSQSSPMQAYNLAIDDLDKELDHLKRSF 105
>gi|168012942|ref|XP_001759160.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689473|gb|EDQ75844.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 137
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 65/90 (72%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
++K+ E D KV NAA FT+ +EDHT+GN++R QL +DP VLFAGYK PHPL+++ +++I
Sbjct: 16 MKKVAYERDMKVMNAATFTLQREDHTIGNILRMQLHRDPSVLFAGYKLPHPLQYRVVVKI 75
Query: 62 QTTAESTPHDALMNAITDLLAELSLFEERF 91
QT ++S+P A AITDL EL + F
Sbjct: 76 QTNSQSSPMQAYNLAITDLTKELDHLKATF 105
>gi|348669578|gb|EGZ09400.1| hypothetical protein PHYSODRAFT_523164 [Phytophthora sojae]
Length = 119
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NA FT+ +EDHT+GN+IR QLL+DP+V+F+GY+ PHPL H +R+Q
Sbjct: 17 QKVTYEKDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVMFSGYRHPHPLIHDITVRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T S+P +AL N++ DL E ++F
Sbjct: 77 TNDASSPVEALANSLDDLSTEFDEIAQKF 105
>gi|344304502|gb|EGW34734.1| RNA polymerase II core subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 122
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 59/82 (71%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNAAI + +EDHTL N++RNQLLKD V+FA YK HPL F+LRIQT + +P
Sbjct: 24 DTKVPNAAIIKIEREDHTLANLLRNQLLKDEKVIFAAYKVEHPLFANFVLRIQTEDDYSP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL NA + L++EL + RF
Sbjct: 84 REALKNACSGLISELDAIKSRF 105
>gi|443895093|dbj|GAC72439.1| RNA polymerase, subunit L [Pseudozyma antarctica T-34]
Length = 154
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 55/76 (72%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA F NKEDHTLGNM+R+ +L +P VLF GYK PHPLE K ++IQT TP
Sbjct: 25 DTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSITP 84
Query: 70 HDALMNAITDLLAELS 85
DAL T L+A++S
Sbjct: 85 TDALKQGCTKLIAQIS 100
>gi|302677665|ref|XP_003028515.1| hypothetical protein SCHCODRAFT_83062 [Schizophyllum commune H4-8]
gi|300102204|gb|EFI93612.1| hypothetical protein SCHCODRAFT_83062 [Schizophyllum commune H4-8]
Length = 149
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 58/82 (70%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNA + K+DHTL NM+R+QLL +P VLFAGYK PHPLE F+LRIQT TP
Sbjct: 24 DTKVPNAVTVKIVKQDHTLANMLRSQLLNNPQVLFAGYKVPHPLEPYFLLRIQTDGTITP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
AL A T LLA +S+ + +F
Sbjct: 84 EIALEQACTQLLAVVSVLKAKF 105
>gi|15231127|ref|NP_190777.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
gi|3219858|sp|Q38859.1|RPB11_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II 13.6 kDa
polypeptide; AltName: Full=DNA-directed RNA polymerase
II subunit J
gi|881501|gb|AAB02849.1| RNA polymerase II 13.6 kDa subunit [Arabidopsis thaliana]
gi|4678938|emb|CAB41329.1| DNA-directed RNA polymerase II 13.6K chain [Arabidopsis thaliana]
gi|29029080|gb|AAO64919.1| At3g52090 [Arabidopsis thaliana]
gi|332645368|gb|AEE78889.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
Length = 116
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ + DTK+ NAA FTV +EDHT+GN++R QL +D +VLFAGY+ PHPL++K I+RI
Sbjct: 17 KKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A AI DL EL + +F
Sbjct: 77 TTSQSSPMQAYNQAINDLDKELDYLKNQF 105
>gi|296413724|ref|XP_002836559.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630386|emb|CAZ80750.1| unnamed protein product [Tuber melanosporum]
Length = 119
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 62/88 (70%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E DT+ PNAAIFT NKEDHTLGN++R LL + HV+F+ YK PHPL KF LR+QT
Sbjct: 18 KVSMEQDTRQPNAAIFTFNKEDHTLGNLLRATLLHNEHVVFSAYKVPHPLFPKFELRVQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E+TP +AL+ A L+ +L + ++
Sbjct: 78 DEETTPKEALLAACQSLIGDLQMLSQKL 105
>gi|356531671|ref|XP_003534400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Glycine
max]
Length = 116
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT+ +E+HT+GN++R QL +DP+VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A +I DL EL + F
Sbjct: 77 TTSQSSPMQAYNQSINDLDRELDHLKSAF 105
>gi|145348497|ref|XP_001418684.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578914|gb|ABO96977.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 64/89 (71%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RK+ E DTKV NA F + +EDHT+GN++R +L K+P V+FAGYK PHP +H+ +L++
Sbjct: 17 RKLSYERDTKVENAGTFVLQREDHTIGNLLRMELHKNPDVVFAGYKNPHPTDHRIVLKVH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T A +TP AL +A+T+L AE+ ++F
Sbjct: 77 TNANTTPVQALRDAVTNLRAEVGDLSQQF 105
>gi|388516987|gb|AFK46555.1| unknown [Lotus japonicus]
Length = 116
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 64/89 (71%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT+ +EDHT+GN++R QL +DP+VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T ++S+P A +I DL EL + F
Sbjct: 77 TASQSSPMQAYNQSINDLDKELDHLKNAF 105
>gi|147832705|emb|CAN70445.1| hypothetical protein VITISV_015574 [Vitis vinifera]
Length = 129
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 61/84 (72%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
E DTK+ NAA FTV +EDHT+GN++R QL +D +VLFAGYK PHPL++K I+RI TT++S
Sbjct: 35 ERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIIRIHTTSQS 94
Query: 68 TPHDALMNAITDLLAELSLFEERF 91
+P A AI DL EL + F
Sbjct: 95 SPMQAYNQAINDLDKELDYLKNAF 118
>gi|125557390|gb|EAZ02926.1| hypothetical protein OsI_25066 [Oryza sativa Indica Group]
gi|125599273|gb|EAZ38849.1| hypothetical protein OsJ_23266 [Oryza sativa Japonica Group]
Length = 135
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 62/90 (68%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
R + E DTK+ NA FT+ +EDHT+GN++R QL +DP+VLFAGYK PHPL++K ++R+
Sbjct: 31 CRWVSYERDTKIVNAGSFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKILVRV 90
Query: 62 QTTAESTPHDALMNAITDLLAELSLFEERF 91
T +STP A AI DL EL ++ F
Sbjct: 91 HTANQSTPTQAYTQAINDLDKELENLKQAF 120
>gi|302783907|ref|XP_002973726.1| hypothetical protein SELMODRAFT_173532 [Selaginella moellendorffii]
gi|302788013|ref|XP_002975776.1| hypothetical protein SELMODRAFT_150734 [Selaginella moellendorffii]
gi|300156777|gb|EFJ23405.1| hypothetical protein SELMODRAFT_150734 [Selaginella moellendorffii]
gi|300158764|gb|EFJ25386.1| hypothetical protein SELMODRAFT_173532 [Selaginella moellendorffii]
Length = 117
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E D KV NA FT+ +EDHT+GN++R QL +DP+VLFAGYK PHPL++K I+++Q
Sbjct: 17 KKVAYERDMKVMNAGAFTIQREDHTVGNVVRMQLHRDPNVLFAGYKLPHPLQYKIIVKVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A A++DL EL + F
Sbjct: 77 TTSQSSPIQAYNLALSDLDKELEHLKRAF 105
>gi|115470799|ref|NP_001058998.1| Os07g0172500 [Oryza sativa Japonica Group]
gi|34394446|dbj|BAC83620.1| putative DNA-directed RNA polymerase II 13.6K chain [Oryza sativa
Japonica Group]
gi|113610534|dbj|BAF20912.1| Os07g0172500 [Oryza sativa Japonica Group]
gi|215704597|dbj|BAG94225.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 120
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 63/89 (70%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NA FT+ +EDHT+GN++R QL +DP+VLFAGYK PHPL++K ++R+
Sbjct: 17 KKVSYERDTKIVNAGSFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKILVRVH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T +STP A AI DL EL ++ F
Sbjct: 77 TANQSTPTQAYTQAINDLDKELENLKQAF 105
>gi|212532477|ref|XP_002146395.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces marneffei ATCC 18224]
gi|210071759|gb|EEA25848.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces marneffei ATCC 18224]
Length = 128
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 62/89 (69%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI ++ DT+ P+ +IFT+NKEDH++GN++R +LL++ HV FA YK PHPL HK LR+Q
Sbjct: 17 KKIEEKADTRTPSTSIFTINKEDHSVGNLLRGRLLQNRHVTFAAYKIPHPLVHKLELRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T E TP DAL+ A D + +L F
Sbjct: 77 TDGEITPKDALLAACHDTVRDLGTLSREF 105
>gi|358248360|ref|NP_001240124.1| uncharacterized protein LOC100784219 [Glycine max]
gi|255626235|gb|ACU13462.1| unknown [Glycine max]
Length = 116
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT+ +E+HT+GN++R QL +DP+VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A ++ DL EL + F
Sbjct: 77 TTSQSSPMQAYNQSVNDLDRELDHLKSAF 105
>gi|224103945|ref|XP_002313254.1| predicted protein [Populus trichocarpa]
gi|118484276|gb|ABK94017.1| unknown [Populus trichocarpa]
gi|222849662|gb|EEE87209.1| predicted protein [Populus trichocarpa]
Length = 116
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 64/89 (71%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FTV +EDHT+GN++R QL +D +VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDDNVLFAGYKLPHPLKYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A AI DL EL + F
Sbjct: 77 TTSQSSPMQAYNQAINDLDKELDHLKNAF 105
>gi|297819918|ref|XP_002877842.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]
gi|297323680|gb|EFH54101.1| ATRPB13.6 [Arabidopsis lyrata subsp. lyrata]
Length = 116
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ + DTK+ NAA FT+ +EDHT+GN++R QL +D +VLFAGY+ PHPL++K I+RI
Sbjct: 17 KKVSYDRDTKIINAASFTIEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A AI DL EL + +F
Sbjct: 77 TTSQSSPMQAYNQAINDLDKELDYLKNQF 105
>gi|301093050|ref|XP_002997374.1| DNA-directed RNA polymerase II subunit J [Phytophthora infestans
T30-4]
gi|262110772|gb|EEY68824.1| DNA-directed RNA polymerase II subunit J [Phytophthora infestans
T30-4]
Length = 119
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 62/89 (69%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NA FT+ +EDHT+GN+IR QLL+DP+V F+GY+ PHPL H +R+Q
Sbjct: 17 QKVTYEKDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDITVRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T S+P +AL N++ DL E ++F
Sbjct: 77 TNDASSPVEALANSLDDLSTEFDEIAQKF 105
>gi|406861045|gb|EKD14101.1| DNA-directed RNA polymerase II [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 122
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 61/89 (68%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ + DT+ ++++FT NKEDHTL N++R L+KDPHVLFAGYK PHPL KF LR+Q
Sbjct: 17 KKVSEAADTRTSDSSVFTFNKEDHTLANILRAHLVKDPHVLFAGYKIPHPLFAKFELRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T +P +AL+ +L+AE+ F
Sbjct: 77 TDGTVSPKEALVKCCKELVAEMETLSREF 105
>gi|393213875|gb|EJC99370.1| RBP11-like subunits of RNA polymerase [Fomitiporia mediterranea
MF3/22]
Length = 171
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 58/82 (70%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA + K+DHTLGNM+R+QLL + VLFAGY+ PHPL+ F+L+IQT TP
Sbjct: 24 DTKIPNAATIKIRKQDHTLGNMLRHQLLANQSVLFAGYRVPHPLQPYFLLKIQTDGTITP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
AL A TDL+ L+ E +F
Sbjct: 84 SQALEKASTDLIGTLTTLETKF 105
>gi|449544553|gb|EMD35526.1| hypothetical protein CERSUDRAFT_116269 [Ceriporiopsis subvermispora
B]
Length = 141
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 57/82 (69%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA V K+DHTLGNM+R QLL+ P VLFAGYK PHPL+ F+++IQT TP
Sbjct: 24 DTKIPNAATIKVVKQDHTLGNMLRAQLLQMPEVLFAGYKVPHPLQPYFLIKIQTDGSVTP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
L A T L+ LS E++F
Sbjct: 84 AAVLEQACTKLIGTLSSLEQKF 105
>gi|328869614|gb|EGG17991.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 1128
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 60/89 (67%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTK+PNA +FT+ KEDHTLGN+IR QL+ DP V FAGY+ PHPLEH ++IQ
Sbjct: 17 KKISMTKDTKIPNACMFTILKEDHTLGNLIRMQLVGDPDVKFAGYRMPHPLEHNITIKIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T +STP AL +I L+ E E F
Sbjct: 77 TFPQSTPIQALEGSIHCLIDEFQKLEIGF 105
>gi|325193331|emb|CCA27671.1| DNAdirected RNA polymerase II subunit J putative [Albugo laibachii
Nc14]
Length = 120
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 63/87 (72%), Gaps = 3/87 (3%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+PNA FT+ +EDHT+GN+IR Q L+DP+V F+GY+ PHPL H ++RIQ
Sbjct: 17 QKVSYEKDTKIPNAGKFTILREDHTIGNLIRMQSLRDPNVTFSGYRHPHPLNHDIVVRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEE 89
T S+P +AL N + DL ++F+E
Sbjct: 77 TNDASSPVEALANCLDDL---STVFDE 100
>gi|326495250|dbj|BAJ85721.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518464|dbj|BAJ88261.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326525789|dbj|BAJ88941.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 119
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 64/89 (71%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT+ +EDHT+GN++R QL +DP+V FAGYK PHPL++K I+RI
Sbjct: 17 KKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T ++S+P A AI DL EL ++ F
Sbjct: 77 TASQSSPTQAYTQAINDLDKELENLKQAF 105
>gi|260808385|ref|XP_002598988.1| hypothetical protein BRAFLDRAFT_280794 [Branchiostoma floridae]
gi|229284263|gb|EEN55000.1| hypothetical protein BRAFLDRAFT_280794 [Branchiostoma floridae]
Length = 117
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 52/64 (81%)
Query: 28 LGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLF 87
+ IR QLLKDP V+FAGYK PHPLEHKF+LR+QTT + +P +A NAITDL++E+SL
Sbjct: 43 IAKSIRQQLLKDPQVIFAGYKVPHPLEHKFVLRLQTTPDYSPQEAFTNAITDLISEVSLL 102
Query: 88 EERF 91
EERF
Sbjct: 103 EERF 106
>gi|326500404|dbj|BAK06291.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 120
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 64/89 (71%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT+ +EDHT+GN++R QL +DP+V FAGYK PHPL++K I+RI
Sbjct: 17 KKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T ++S+P A AI DL EL ++ F
Sbjct: 77 TASQSSPTQAYTQAINDLDKELENLKQAF 105
>gi|448089577|ref|XP_004196845.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|448093877|ref|XP_004197876.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|359378267|emb|CCE84526.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
gi|359379298|emb|CCE83495.1| Piso0_004071 [Millerozyma farinosa CBS 7064]
Length = 122
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 58/82 (70%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNAAI + +EDHTL N++R QLLKD VLFA YK HPL F+LRIQT + +P
Sbjct: 24 DTKVPNAAIIKIEREDHTLANLLRAQLLKDEKVLFAAYKVEHPLFANFVLRIQTEDDYSP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL NA + L+ EL + + RF
Sbjct: 84 REALRNACSALIGELDIIKTRF 105
>gi|241948087|ref|XP_002416766.1| DNA-directed RNA polymerase II [13.6 kda] subunit, putative
[Candida dubliniensis CD36]
gi|223640104|emb|CAX44350.1| DNA-directed RNA polymerase II [13.6 kda] subunit, putative
[Candida dubliniensis CD36]
Length = 124
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 59/82 (71%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNAAI + +EDHTL N++R QLLKD VLFA YK HPL F+LR+QT + +P
Sbjct: 24 DTKVPNAAIVKIEREDHTLANLLRAQLLKDERVLFAAYKVEHPLFANFVLRVQTEDDYSP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL NA + L++EL + + +F
Sbjct: 84 REALQNACSSLISELDVIKSKF 105
>gi|388854627|emb|CCF51784.1| related to DNA-directed RNA polymerase 13.3K chain [Ustilago
hordei]
Length = 149
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 54/76 (71%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA F NKEDHTLGNM+R+ +L +P VLF GYK PHPLE K ++IQT TP
Sbjct: 25 DTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSITP 84
Query: 70 HDALMNAITDLLAELS 85
DAL L+A++S
Sbjct: 85 TDALKQGCQKLIAQIS 100
>gi|238879406|gb|EEQ43044.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Candida
albicans WO-1]
Length = 124
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 59/82 (71%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNAAI + +EDHTL N++R QLLKD VLFA YK HPL F+LRIQT + +P
Sbjct: 24 DTKVPNAAIVKIEREDHTLANLLRAQLLKDDRVLFAAYKVEHPLFANFVLRIQTEDDYSP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL NA + L++EL + + +F
Sbjct: 84 REALQNACSGLISELDVIKSKF 105
>gi|392576553|gb|EIW69684.1| hypothetical protein TREMEDRAFT_44159 [Tremella mesenterica DSM
1558]
Length = 161
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 58/82 (70%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D K+PNAA + K+DHT+GNMIR QLL DP VLFAGYK PHPLE+ +++IQT S P
Sbjct: 27 DPKIPNAATIMMKKQDHTMGNMIRAQLLLDPSVLFAGYKVPHPLENDILIKIQTDERSNP 86
Query: 70 HDALMNAITDLLAELSLFEERF 91
DAL A T L+ +L+ + +F
Sbjct: 87 ADALKRACTLLIQQLTEVKRQF 108
>gi|149243898|ref|XP_001526543.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448937|gb|EDK43193.1| DNA-directed RNA polymerase II 13.6 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 121
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 57/82 (69%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNAAI + +EDHTL N++R QLLKDP V+FA YK HPL F+LRIQT + TP
Sbjct: 24 DTKVPNAAIIKIEREDHTLANLLRAQLLKDPRVIFAAYKVEHPLFANFVLRIQTEEDYTP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL NA L+ EL + +F
Sbjct: 84 KEALKNACNMLINELGAIKSKF 105
>gi|449464004|ref|XP_004149719.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
gi|449516703|ref|XP_004165386.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
Length = 116
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 64/89 (71%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT+ +E+HT+GN++R QL +D +VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A AI DL EL + F
Sbjct: 77 TTSQSSPMQAYNQAINDLDKELDHLKNAF 105
>gi|393245982|gb|EJD53491.1| RBP11-like subunits of RNA polymerase [Auricularia delicata
TFB-10046 SS5]
Length = 148
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 56/82 (68%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA + K+DHT+ NMIR QLL P VLFAGYK PHPLE FIL++QT + TP
Sbjct: 24 DTKIPNAATIKIIKQDHTMANMIRAQLLSMPGVLFAGYKVPHPLEPYFILKVQTDGQRTP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+ A +L+ +S+ ERF
Sbjct: 84 AQVVQAACQELIQTISILTERF 105
>gi|330843149|ref|XP_003293524.1| hypothetical protein DICPUDRAFT_90278 [Dictyostelium purpureum]
gi|325076130|gb|EGC29943.1| hypothetical protein DICPUDRAFT_90278 [Dictyostelium purpureum]
Length = 120
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 62/89 (69%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ DTK+PNA++F + KEDHT+GN++R QL+ DP ++FAGY+ PHPLEH +RIQ
Sbjct: 17 KKVTMTRDTKIPNASMFVILKEDHTVGNLVRMQLVADPDIIFAGYRMPHPLEHNVNIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T +TP D++ +I L E E++F
Sbjct: 77 TNQNTTPLDSIKKSIECLTNEFLNIEDQF 105
>gi|451848796|gb|EMD62101.1| hypothetical protein COCSADRAFT_38897 [Cochliobolus sativus ND90Pr]
Length = 130
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 62/88 (70%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ ++ +T+VPN A+FT NKEDHTLGN++ +LLK+P V+FA YK PHPL F LR+QT
Sbjct: 18 KVEEKAETRVPNTAVFTFNKEDHTLGNLLSQRLLKNPAVMFAAYKVPHPLFATFELRVQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
TP +A+M +++A+LS + F
Sbjct: 78 DGSITPKEAVMKTCREVIADLSKLNDSF 105
>gi|343427525|emb|CBQ71052.1| related to DNA-directed RNA polymerase 13.3K chain [Sporisorium
reilianum SRZ2]
Length = 147
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 54/76 (71%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA F NKEDHTLGNM+R+ +L +P VLF GYK PHPLE K ++IQT TP
Sbjct: 25 DTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSITP 84
Query: 70 HDALMNAITDLLAELS 85
DAL L+A++S
Sbjct: 85 TDALKQGSQKLIAQIS 100
>gi|71011575|ref|XP_758471.1| hypothetical protein UM02324.1 [Ustilago maydis 521]
gi|46097891|gb|EAK83124.1| hypothetical protein UM02324.1 [Ustilago maydis 521]
Length = 145
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 54/76 (71%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA F NKEDHTLGNM+R+ +L +P VLF GYK PHPLE K ++IQT TP
Sbjct: 25 DTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSLTP 84
Query: 70 HDALMNAITDLLAELS 85
DAL L+A++S
Sbjct: 85 TDALKQGSQKLIAQIS 100
>gi|451998617|gb|EMD91081.1| hypothetical protein COCHEDRAFT_1103438, partial [Cochliobolus
heterostrophus C5]
Length = 125
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 62/88 (70%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ ++ +T+VPN A+FT NKEDHTLGN++ +LLK+P ++FA YK PHPL F LR+QT
Sbjct: 13 KVEEKAETRVPNTAVFTFNKEDHTLGNLLSQRLLKNPAIMFAAYKVPHPLFATFELRVQT 72
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
TP +A+M +++A+LS + F
Sbjct: 73 DGSITPKEAVMKTCREVIADLSKLNDSF 100
>gi|413937800|gb|AFW72351.1| hypothetical protein ZEAMMB73_926131 [Zea mays]
Length = 120
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 63/89 (70%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT +EDHT+GN++R QL +DP+VLFAGYK PHPL++K I+RI
Sbjct: 17 KKVSYERDTKIVNAASFTDEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T ++S+ A AI DL EL ++ F
Sbjct: 77 TMSQSSLTQAYTQAINDLDKELEYLKQAF 105
>gi|354544239|emb|CCE40962.1| hypothetical protein CPAR2_110000 [Candida parapsilosis]
Length = 122
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 57/82 (69%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D+KVPNAAI + +EDHTL N++R QLLKD V+FA YK HPL F+LRIQT + +P
Sbjct: 24 DSKVPNAAIIKIEREDHTLANLLRAQLLKDDRVIFAAYKVEHPLFANFVLRIQTEDDYSP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
DAL NA L+AEL ++F
Sbjct: 84 KDALKNACQALIAELQAINDKF 105
>gi|389748032|gb|EIM89210.1| RBP11-like subunits of RNA polymerase [Stereum hirsutum FP-91666
SS1]
Length = 166
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 56/82 (68%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA V K+DHTLGNMIR QLL+ P VLFAGYK PHPL F++++QT TP
Sbjct: 24 DTKIPNAATIKVLKQDHTLGNMIRAQLLQSPQVLFAGYKVPHPLHPYFLIKLQTDGTITP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
AL A T L+ L+ E +F
Sbjct: 84 AYALEQACTKLIGTLASLETQF 105
>gi|242775658|ref|XP_002478685.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722304|gb|EED21722.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Talaromyces stipitatus ATCC 10500]
Length = 156
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 62/89 (69%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI ++ DT+ P+ +IFT+NKEDH++GN++R +LL++ HV FA YK PHPL HK LR+Q
Sbjct: 45 KKIEEKADTRTPSTSIFTLNKEDHSVGNLLRGRLLQNRHVTFAAYKIPHPLVHKVELRVQ 104
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T E TP +AL+ A D + +L F
Sbjct: 105 TDGEITPKEALLAACHDTVRDLGTLSREF 133
>gi|336364500|gb|EGN92857.1| hypothetical protein SERLA73DRAFT_190428 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388546|gb|EGO29690.1| hypothetical protein SERLADRAFT_457791 [Serpula lacrymans var.
lacrymans S7.9]
Length = 142
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 54/82 (65%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA F + K+DHTLGNM+R +L P VLFAGYK PHPL F+L+IQT TP
Sbjct: 24 DTKIPNAATFKIMKQDHTLGNMVRAYVLAMPQVLFAGYKVPHPLHPYFLLKIQTDGTVTP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
L A T L+ LS E +F
Sbjct: 84 QVVLEQACTKLIGSLSTLEAKF 105
>gi|115394874|ref|XP_001213448.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193017|gb|EAU34717.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1608
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 46/88 (52%), Positives = 66/88 (75%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E+DT++P++AIFT NKEDHTLGN++ ++LL+ HVLFA YK PHPL+ KF+LR+QT
Sbjct: 55 KVEMEIDTRIPSSAIFTFNKEDHTLGNLLSSRLLQSSHVLFAAYKVPHPLDPKFLLRVQT 114
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E TP DA++ A +L+ +L + F
Sbjct: 115 DGEITPKDAVIAACHELVRDLGILSREF 142
>gi|440632021|gb|ELR01940.1| hypothetical protein GMDG_05113 [Geomyces destructans 20631-21]
Length = 189
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI + +DT+ PN++IFT+ KEDHTL N++R LLKDPHV FAGY+ PHPL LR+Q
Sbjct: 79 KKITEAVDTRTPNSSIFTILKEDHTLANLLRAHLLKDPHVTFAGYRVPHPLFATIELRVQ 138
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP +A++ L+AEL+ F
Sbjct: 139 TDGTLTPKEAVIGIAKSLVAELAQLSREF 167
>gi|281203019|gb|EFA77220.1| hypothetical protein PPL_12430 [Polysphondylium pallidum PN500]
Length = 1177
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ DT++PNA +FT+ KEDHT+GN+IR QL+ DP + FAGY+ PHPLEH ++IQ
Sbjct: 34 KKVSMTKDTRIPNACLFTILKEDHTVGNLIRMQLVGDPDIKFAGYRMPHPLEHNIAIKIQ 93
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T STP AL +I L+ E E +F
Sbjct: 94 TYPHSTPIQALEGSIHCLIDEFQKIELQF 122
>gi|328859791|gb|EGG08899.1| hypothetical protein MELLADRAFT_34668 [Melampsora larici-populina
98AG31]
Length = 159
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 58/81 (71%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ + DTK+PNA T+NKEDHTLGNM+R QLL+ +V+FAGYK PHPLE +FI+++QT
Sbjct: 18 KLTIDEDTKIPNACTVTINKEDHTLGNMLRAQLLQMEYVIFAGYKVPHPLEPRFIIKVQT 77
Query: 64 TAESTPHDALMNAITDLLAEL 84
TP A+ A+ L+ L
Sbjct: 78 DGTHTPIQAIQEAVKSLILSL 98
>gi|330929492|ref|XP_003302661.1| hypothetical protein PTT_14569 [Pyrenophora teres f. teres 0-1]
gi|311321850|gb|EFQ89261.1| hypothetical protein PTT_14569 [Pyrenophora teres f. teres 0-1]
Length = 151
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 62/89 (69%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ ++ +T+VPN A+FT NKEDHTLGN++ +L K+P +LFA YK PHPL F LR+Q
Sbjct: 38 QKVEEKAETRVPNTAVFTFNKEDHTLGNLLSARLQKNPAILFAAYKVPHPLFATFELRVQ 97
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP +A++ T+++ ELS + F
Sbjct: 98 TDGSITPKEAVIRTCTEVITELSKLNDSF 126
>gi|395324938|gb|EJF57369.1| DNA-directed RNA polymerase II [Dichomitus squalens LYAD-421 SS1]
Length = 142
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 56/82 (68%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA + K+DHTL N++R+QLL P VLFAGYK PHPL+ F+L+IQT TP
Sbjct: 24 DTKIPNAATIKIVKQDHTLANLLRSQLLGYPSVLFAGYKAPHPLQPHFLLKIQTDGSITP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
L A TDL+ ++ E +F
Sbjct: 84 AAILEKACTDLIGMVATLESKF 105
>gi|384244757|gb|EIE18255.1| RBP11-like subunits of RNA polymerase [Coccomyxa subellipsoidea
C-169]
Length = 122
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 62/90 (68%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
+ KI E DTKV NAA FT+ +EDHT+GN++R QLL+D V FAGYK PHPL++ ++++
Sbjct: 16 VPKISLEKDTKVTNAATFTLQREDHTVGNLVRMQLLRDKEVTFAGYKFPHPLDYHILIKV 75
Query: 62 QTTAESTPHDALMNAITDLLAELSLFEERF 91
QT + +P + + +A+TDL E +F
Sbjct: 76 QTKGKKSPREVMDDALTDLCDEFEDIRAKF 105
>gi|402222352|gb|EJU02419.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 149
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 55/82 (67%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA V K+DHTL NMIR LLK+P VLFAGYK PHPL+ FIL+IQT STP
Sbjct: 24 DTKIPNAATIVVAKQDHTLANMIRGYLLKNPKVLFAGYKAPHPLDPHFILKIQTDGTSTP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+ L L+A + + +F
Sbjct: 84 LEVLQETCNALIALVGKIDAKF 105
>gi|342320371|gb|EGU12312.1| DNA-directed RNA polymerase II [Rhodotorula glutinis ATCC 204091]
Length = 130
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 56/82 (68%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA T+NKEDHTL NM+R+QLL P+V FAGYK PHPLE + +L++QT TP
Sbjct: 24 DTKIPNAATLTINKEDHTLANMLRSQLLLFPYVQFAGYKVPHPLEPRVVLKVQTDGSRTP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
A+ AI LL L +F
Sbjct: 84 LVAVQEAINTLLILLGKVRSQF 105
>gi|298713624|emb|CBJ33676.1| RNA polymerase II core subunit [Ectocarpus siliculosus]
Length = 170
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
R++ DTK+P+A F + KEDHTLGN++R QLL D V FAGY QPHPLE+K +++Q
Sbjct: 64 RRLAYTPDTKIPHAGTFEIIKEDHTLGNLLRMQLLADRQVRFAGYMQPHPLENKIHIKVQ 123
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T ++TP DAL A DL E+ E F
Sbjct: 124 TNGDNTPVDALSAATEDLSQEMEGLREVF 152
>gi|449436317|ref|XP_004135939.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
gi|449488830|ref|XP_004158185.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Cucumis sativus]
Length = 116
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 63/86 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA F + +EDHT+GN++R QL +D +VLFAGY+ PHPL+++ ++RIQ
Sbjct: 17 KKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAGYQLPHPLKYRILVRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFE 88
T ++S+P A AI DL EL + +
Sbjct: 77 TASQSSPMQAYNQAINDLDKELDVLK 102
>gi|169851088|ref|XP_001832235.1| DNA-directed RNA polymerase II [Coprinopsis cinerea okayama7#130]
gi|116506713|gb|EAU89608.1| DNA-directed RNA polymerase II [Coprinopsis cinerea okayama7#130]
Length = 144
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 57/82 (69%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D+K+PNAA V K+DHTLGNM+R+QLL P VLFAGYK PHPL FI+++QT TP
Sbjct: 24 DSKIPNAATIKVVKQDHTLGNMLRSQLLAMPEVLFAGYKVPHPLHPYFIVKVQTDGSITP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
A+ A T L+A ++ ++F
Sbjct: 84 QAAVEAACTKLIATINTVAQKF 105
>gi|449480053|ref|XP_002193087.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Taeniopygia guttata]
Length = 94
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 35 QLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P +A NAITDL++ELSL EERF
Sbjct: 26 QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 82
>gi|426195387|gb|EKV45317.1| hypothetical protein AGABI2DRAFT_194279 [Agaricus bisporus var.
bisporus H97]
Length = 148
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 55/82 (67%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D+K+PNAA + K+DHTLGNM+R QLL P +LFAGYK PHPL F+++IQT TP
Sbjct: 24 DSKIPNAATIKILKQDHTLGNMLRAQLLSMPQILFAGYKVPHPLHPYFLIKIQTDGTITP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+ L A T L+ +S E +F
Sbjct: 84 QELLEQACTKLIGTMSSLETKF 105
>gi|409077044|gb|EKM77412.1| hypothetical protein AGABI1DRAFT_115317 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 148
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 55/82 (67%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D+K+PNAA + K+DHTLGNM+R QLL P +LFAGYK PHPL F+++IQT TP
Sbjct: 24 DSKIPNAATIKILKQDHTLGNMLRAQLLSMPQILFAGYKVPHPLHPYFLIKIQTDGTITP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+ L A T L+ +S E +F
Sbjct: 84 QELLEQACTKLIGTMSSLETKF 105
>gi|164661103|ref|XP_001731674.1| hypothetical protein MGL_0942 [Malassezia globosa CBS 7966]
gi|159105575|gb|EDP44460.1| hypothetical protein MGL_0942 [Malassezia globosa CBS 7966]
Length = 159
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 59/89 (66%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
++I + D ++PNAA F NKEDHTLGNM+R+ +L P VLF GYK PHPLE + +++IQ
Sbjct: 18 QRIEVQEDMRIPNAATFIFNKEDHTLGNMLRHAVLAQPGVLFCGYKVPHPLEPRVLVKIQ 77
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP + L A T L+ ++ ++ +
Sbjct: 78 TDGSLTPAEVLQQACTKLIVQMGALKQGW 106
>gi|406606706|emb|CCH41930.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 121
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 59/88 (67%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI E D KV NAAI T KEDHTLGN++R QLLKD V+FA YK HPL F++RIQT
Sbjct: 18 KIKVEPDLKVENAAIVTFEKEDHTLGNLLRAQLLKDERVVFAAYKVEHPLFANFVMRIQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
TP +AL NA +++A++ + +F
Sbjct: 78 EDNYTPREALKNACYNVIAQIEALKSKF 105
>gi|395842980|ref|XP_003794284.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a
[Otolemur garnettii]
gi|402863133|ref|XP_003895886.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a [Papio
anubis]
Length = 87
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 49/59 (83%)
Query: 33 RNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
+ QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P +A NAITDL++ELSL EERF
Sbjct: 17 KKQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 75
>gi|339243709|ref|XP_003377780.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella spiralis]
gi|316973374|gb|EFV56975.1| DNA-directed RNA polymerase II subunit RPB11 [Trichinella spiralis]
Length = 114
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 63/88 (71%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ + +TKVPNA +FT+NKEDHT+G++I++ L+ +P VLF G++ PHPLEHK LR+QT
Sbjct: 18 KLVVQKETKVPNAYLFTLNKEDHTIGHLIKDHLMSNPKVLFVGFRAPHPLEHKIYLRLQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + P + A++DL+ EE+
Sbjct: 78 TPDVHPIRVMKLALSDLVTMCDHVEEKL 105
>gi|119570637|gb|EAW50252.1| hCG1818005, isoform CRA_b [Homo sapiens]
Length = 79
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 35 QLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P +A NAITDL++ELSL EERF
Sbjct: 1 QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 57
>gi|119570636|gb|EAW50251.1| hCG1818005, isoform CRA_a [Homo sapiens]
Length = 111
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 35 QLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P +A NAITDL++ELSL EERF
Sbjct: 1 QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 57
>gi|119570638|gb|EAW50253.1| hCG1818005, isoform CRA_c [Homo sapiens]
Length = 69
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 35 QLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P +A NAITDL++ELSL EERF
Sbjct: 1 QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 57
>gi|170099820|ref|XP_001881128.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643807|gb|EDR08058.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 150
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 54/82 (65%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA + K+DHTLGNM+R QLL P +LFAGYK PHPL F+++IQT TP
Sbjct: 24 DTKIPNAATIKIVKQDHTLGNMLRAQLLSMPQILFAGYKVPHPLHPYFLIKIQTDGTITP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
L A T L+ +S E +F
Sbjct: 84 QAILHQACTKLIGTMSSLETKF 105
>gi|291000204|ref|XP_002682669.1| predicted protein [Naegleria gruberi]
gi|284096297|gb|EFC49925.1| predicted protein [Naegleria gruberi]
Length = 140
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 60/88 (68%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ +E K+PNAA F VNKEDHTLGN+IR +L +D VLFAGY+ PHPLEH ++IQT
Sbjct: 17 KLREEKIEKMPNAANFIVNKEDHTLGNIIRMRLHEDKRVLFAGYRNPHPLEHHIEIKIQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + P DAL+ I L+ + + + F
Sbjct: 77 TDDIEPRDALVGTIDSLIRDFNYMKREF 104
>gi|390599050|gb|EIN08447.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 140
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 55/82 (67%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA + K+DHTL NMIR +LL P VLFAGYK PHPL+ F++++QT TP
Sbjct: 24 DTKIPNAATIKIVKQDHTLANMIRAELLASPQVLFAGYKVPHPLQPYFLIKLQTDGSVTP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+ +A T L+ +L E +F
Sbjct: 84 TAIMESACTKLIGQLVTLEAKF 105
>gi|395536502|ref|XP_003770254.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Sarcophilus harrisii]
Length = 122
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 35 QLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P +A NAITDL++ELSL EERF
Sbjct: 54 QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 110
>gi|111226740|ref|XP_642530.2| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74861274|sp|Q86JJ5.1|RPB11_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb11;
Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|90970744|gb|EAL68596.2| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 120
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 59/89 (66%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ DTK+PNA++FT+ KEDHT+GN+IR QL+ D ++FAGY+ PHPLEH +RIQ
Sbjct: 17 KKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + P + + ++ L E + E F
Sbjct: 77 TNNNTNPLECVQKSMECLSREFTSLENSF 105
>gi|448520186|ref|XP_003868244.1| Rpb11 RNA polymerase II subunit [Candida orthopsilosis Co 90-125]
gi|380352583|emb|CCG22810.1| Rpb11 RNA polymerase II subunit [Candida orthopsilosis]
Length = 122
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 58/90 (64%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
+ KI D+KVPNAAI + +EDHTL N++R QLLKD V+FA YK HPL F+LRI
Sbjct: 16 VEKIKITPDSKVPNAAIVKIEREDHTLANLLRAQLLKDDRVIFAAYKVEHPLFANFVLRI 75
Query: 62 QTTAESTPHDALMNAITDLLAELSLFEERF 91
QT +P +AL NA L+AEL +F
Sbjct: 76 QTEDNYSPKEALKNACNALIAELRDISNKF 105
>gi|403416590|emb|CCM03290.1| predicted protein [Fibroporia radiculosa]
Length = 142
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 55/82 (67%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA V K+DHTLGN+IR QLL P VLFAGYK PHPL+ F+++IQT +TP
Sbjct: 24 DTKIPNAATIKVMKQDHTLGNLIRAQLLSMPQVLFAGYKVPHPLQPHFLIKIQTDGTATP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+ L A L+ + E +F
Sbjct: 84 TEILEQACNKLIQMMVSLEAKF 105
>gi|156844441|ref|XP_001645283.1| hypothetical protein Kpol_1037p21 [Vanderwaltozyma polyspora DSM
70294]
gi|156115943|gb|EDO17425.1| hypothetical protein Kpol_1037p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 120
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 55/84 (65%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
E DTK PNA + T KEDHTLGN+IR++LL D VLFA YK HPL +F LRIQT
Sbjct: 22 EPDTKAPNAVVITFEKEDHTLGNLIRSELLNDSKVLFAAYKVEHPLFARFKLRIQTVENY 81
Query: 68 TPHDALMNAITDLLAELSLFEERF 91
P DAL NA +++ +L + + F
Sbjct: 82 DPKDALKNACNNIINKLGILKTNF 105
>gi|401885887|gb|EJT49968.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406697526|gb|EKD00785.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 160
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 55/82 (67%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D K+PNAA F + +DHTLGNM+R QLL DP VLFAGYK PHPLE+ ++IQT S P
Sbjct: 28 DAKIPNAATFVLRAQDHTLGNMLRAQLLLDPTVLFAGYKLPHPLENVISIKIQTDERSNP 87
Query: 70 HDALMNAITDLLAELSLFEERF 91
DAL A L+ + +++F
Sbjct: 88 ADALKRACQQLINQTLSIKKQF 109
>gi|335345786|gb|AEH41473.1| DNA-directed RNA polymerase II subunit RPB11a [Endocarpon pusillum]
Length = 124
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 58/89 (65%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ LDT++PN IF NKEDHTLGN++R +LL+D V FA YK PHPL F LR+Q
Sbjct: 18 KKVEMTLDTRMPNTCIFKFNKEDHTLGNLLRARLLQDRRVTFAAYKVPHPLFPTFELRVQ 77
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T +P +AL+ A D +++L+ F
Sbjct: 78 TDGSLSPKEALLQACRDSVSDLNTLSREF 106
>gi|50551669|ref|XP_503309.1| YALI0D26301p [Yarrowia lipolytica]
gi|49649177|emb|CAG81515.1| YALI0D26301p [Yarrowia lipolytica CLIB122]
Length = 117
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 56/82 (68%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DT++PN A KEDHTLGN++R+QLL D V+FA YK HPL F+LRIQT + +P
Sbjct: 24 DTRIPNCANIKFEKEDHTLGNLLRSQLLHDSRVIFAAYKVEHPLFANFVLRIQTEDDYSP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL NA L+ +LS +E+F
Sbjct: 84 QEALTNACNALIRQLSDLQEKF 105
>gi|403216456|emb|CCK70953.1| hypothetical protein KNAG_0F02910 [Kazachstania naganishii CBS
8797]
Length = 122
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 56/88 (63%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ + DTK PNA + T NKEDHTLGN+IR +LL D VLFA YK HP +F LRIQT
Sbjct: 18 KLVIDPDTKSPNAIVITFNKEDHTLGNLIRAELLNDSKVLFAAYKVEHPFFARFKLRIQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
P DAL NA ++ +L + + F
Sbjct: 78 VEGYDPKDALKNACNGIINKLGILKTNF 105
>gi|366992780|ref|XP_003676155.1| hypothetical protein NCAS_0D02120 [Naumovozyma castellii CBS 4309]
gi|342302021|emb|CCC69793.1| hypothetical protein NCAS_0D02120 [Naumovozyma castellii CBS 4309]
Length = 122
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 53/82 (64%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK PNA + T KEDHTLGN+IR++LL D VLFA YK HP +F LRIQT P
Sbjct: 24 DTKAPNAVVITFEKEDHTLGNLIRSELLNDSRVLFAAYKVEHPFFARFKLRIQTVEGYDP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
DAL NA ++++L + + F
Sbjct: 84 KDALKNACNSIISKLGVLKGNF 105
>gi|254579979|ref|XP_002495975.1| ZYRO0C07502p [Zygosaccharomyces rouxii]
gi|238938866|emb|CAR27042.1| ZYRO0C07502p [Zygosaccharomyces rouxii]
Length = 122
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 53/82 (64%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK PNA + T KEDHTLGN+IR +LL DP VLFA YK HPL +F +RIQT P
Sbjct: 24 DTKAPNAIVVTFEKEDHTLGNLIRAELLNDPKVLFAAYKVEHPLFARFKMRIQTMEGYDP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
DAL NA ++ +L + + F
Sbjct: 84 KDALKNACNGIINKLGVLKTNF 105
>gi|367017037|ref|XP_003683017.1| hypothetical protein TDEL_0G04390 [Torulaspora delbrueckii]
gi|359750680|emb|CCE93806.1| hypothetical protein TDEL_0G04390 [Torulaspora delbrueckii]
Length = 122
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 55/84 (65%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
E DTK PNA + T KEDHTLGN+IR++LL D VLFA YK HPL +F +RIQT
Sbjct: 22 EPDTKAPNAVVITFEKEDHTLGNLIRSELLNDTKVLFAAYKVEHPLFARFKMRIQTVEGY 81
Query: 68 TPHDALMNAITDLLAELSLFEERF 91
P DAL NA ++ +L++ + F
Sbjct: 82 DPKDALKNACNGIINKLAVLKTNF 105
>gi|449018281|dbj|BAM81683.1| RNA polymerase II subunit [Cyanidioschyzon merolae strain 10D]
Length = 133
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
++K+ DT++PN A F + +EDHTL N +R QLL+D +VLFA Y+ PHPLEH IL++
Sbjct: 19 VKKLRYVPDTRLPNCASFVIEREDHTLANALRAQLLRDRNVLFAAYRVPHPLEHHVILKV 78
Query: 62 QT-TAESTPHDALMNAITDLLAELSLFEERF 91
QT +E TP +AL A+ L E+ + E+ F
Sbjct: 79 QTRRSEYTPLEALCAALVALKNEIHVLEDEF 109
>gi|392562097|gb|EIW55278.1| RBP11-like subunits of RNA polymerase [Trametes versicolor
FP-101664 SS1]
Length = 139
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 53/82 (64%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNAA + K+DHTL N++R+QLL P V FAGYK PHPL F+L+IQT TP
Sbjct: 24 DTKIPNAATVKIVKQDHTLANLLRSQLLSMPQVTFAGYKVPHPLHPYFLLKIQTDGSVTP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
L A T L+ ++ E +F
Sbjct: 84 TQVLETACTKLIGTIATLEAKF 105
>gi|378725610|gb|EHY52069.1| DNA-directed RNA polymerase II subunit J [Exophiala dermatitidis
NIH/UT8656]
Length = 269
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ DT+ PN IF NKEDHTLGN + +QL K+ HV +A Y+ PHPL +F LRIQ
Sbjct: 162 KKVEPGHDTRTPNTMIFVYNKEDHTLGNALVDQLHKNSHVTYAAYRVPHPLFARFELRIQ 221
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T E TP +AL+ A D++ EL + + +F
Sbjct: 222 TDGEITPKEALLAASRDVIRELEVIKVKF 250
>gi|354477592|ref|XP_003501003.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Cricetulus griseus]
Length = 99
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 58/89 (65%), Gaps = 18/89 (20%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLK+ VLF
Sbjct: 17 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKETQVLF------------------ 58
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 59 TTPDYSPQEAFTNAITDLISELSLLEERF 87
>gi|422293772|gb|EKU21072.1| DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis
gaditana CCMP526]
Length = 126
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT--TAES 67
+ K+ N+ +NKEDHT+GN+IR QLL+D V FAGY PHPL HK LR+QT A S
Sbjct: 26 NEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALS 85
Query: 68 TPHDALMNAITDLLAELSLFEERF 91
TP AL NA++DL E + + RF
Sbjct: 86 TPMQALENALSDLNQEFTGLKARF 109
>gi|323452227|gb|EGB08102.1| hypothetical protein AURANDRAFT_26699 [Aureococcus anophagefferens]
Length = 118
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES-T 68
D K+PNA FT+NKEDHT+GN++R Q+L+ P FAGY+ PHPL ++ ++IQTT+ + T
Sbjct: 24 DEKIPNAGTFTINKEDHTVGNLLRMQILRSPDTKFAGYQLPHPLMNECRVKIQTTSANLT 83
Query: 69 PHDALMNAITDLLAELSLFEERF 91
P A AI DL +E+ + + F
Sbjct: 84 PIGAFQRAIEDLQSEMDILDRNF 106
>gi|397616203|gb|EJK63876.1| hypothetical protein THAOC_15445 [Thalassiosira oceanica]
Length = 123
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI + DTKV NA FT+NKEDHT+GN++R QLL+DP V FAGY PHPL ++ L++QT
Sbjct: 19 KIEYQPDTKVANAGTFTLNKEDHTVGNLLRMQLLRDPQVKFAGYMHPHPLVNRIHLKVQT 78
Query: 64 -TAESTPHDALMNAITDLLAE 83
T++ P ++L AI DL E
Sbjct: 79 STSQVAPTESLSAAIEDLSNE 99
>gi|413937810|gb|AFW72361.1| hypothetical protein ZEAMMB73_595234 [Zea mays]
Length = 208
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 58/89 (65%), Gaps = 11/89 (12%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
R++ E DTK+ NAA FTV +EDHT+GN++R QL +DP+VLFAGYK PHPL++K I+R
Sbjct: 121 RRVSYERDTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVR-- 178
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
A AI DL EL ++ F
Sbjct: 179 ---------AYTQAINDLDKELEYLKQAF 198
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 5/46 (10%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIR-----NQLLKDPHVL 43
+K+ E DTK+ NAA FTV +EDHT+GN++R N+ + P +L
Sbjct: 17 KKVSYERDTKIVNAASFTVEREDHTVGNILRIWYNTNRQMCTPRIL 62
>gi|365758451|gb|EHN00292.1| Rpb11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401842527|gb|EJT44698.1| RPB11-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 122
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 54/88 (61%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E DTK PNA + T KEDHTLGN+IR +LL D VLFA YK HP +F LRIQT
Sbjct: 18 KLKIEPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T P DAL NA ++ +L + F
Sbjct: 78 TEGYDPKDALKNACNSIINKLGALKTNF 105
>gi|409048064|gb|EKM57542.1| hypothetical protein PHACADRAFT_251231 [Phanerochaete carnosa
HHB-10118-sp]
Length = 141
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 54/82 (65%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNA F + KEDHTLGN++R +LLKD LFAGYK PHPL F+L++Q+ T
Sbjct: 24 DTKIPNATTFKIVKEDHTLGNLLRAELLKDSRCLFAGYKVPHPLHPYFLLKVQSDGSVTA 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+ +A LL +L+ E +F
Sbjct: 84 SKLVTDACQSLLEKLASVEAKF 105
>gi|255080692|ref|XP_002503919.1| predicted protein [Micromonas sp. RCC299]
gi|226519186|gb|ACO65177.1| predicted protein [Micromonas sp. RCC299]
Length = 101
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 58/84 (69%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
+RK+ DTKV NA + V KEDHTLGN++R QL +DP+V+FAGY+ PHP +++ ++++
Sbjct: 16 VRKLTFTRDTKVANAGTYVVQKEDHTLGNIVRMQLHRDPNVVFAGYQVPHPSDNRIVIKV 75
Query: 62 QTTAESTPHDALMNAITDLLAELS 85
T S+P A+ ++ L E+S
Sbjct: 76 HTNKNSSPMQAMTESVNCLSEEVS 99
>gi|403367466|gb|EJY83556.1| DNA-directed RNA polymerase II subunit RPB11 [Oxytricha
trifallax]
Length = 138
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 57/88 (64%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
+I E+D+K+ N A T+ +EDHTLGN +R QLLKD V F+GY+ PHPLEHK +++QT
Sbjct: 7 RIKYEIDSKIRNFATITIEEEDHTLGNTVRVQLLKDTRVRFSGYRMPHPLEHKVEIKVQT 66
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E P +A+ NA + A + + F
Sbjct: 67 NGEINPAEAVQNACLNTHAHVEQIKTSF 94
>gi|403359539|gb|EJY79434.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 138
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 57/88 (64%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
+I E+D+K+ N A T+ +EDHTLGN +R QLLKD V F+GY+ PHPLEHK +++QT
Sbjct: 7 RIKYEIDSKIRNFATITIEEEDHTLGNTVRVQLLKDTRVRFSGYRMPHPLEHKVEIKVQT 66
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E P +A+ NA + A + + F
Sbjct: 67 NGEINPAEAVQNACLNTHAHVEQIKTSF 94
>gi|71650711|ref|XP_814048.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878987|gb|EAN92197.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 133
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 6/95 (6%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RKI +E+ +K+PN+++F ++KEDHTL N++R +L +D V AGY+ PHP +H+ LR+Q
Sbjct: 27 RKITEEISSKMPNSSLFKLDKEDHTLANLLRMKLHEDALVHIAGYRVPHPTQHRVELRVQ 86
Query: 63 TTAES------TPHDALMNAITDLLAELSLFEERF 91
T+++ +P DAL+ AI + +L FEE+
Sbjct: 87 TSSDGSGRPIPSPKDALLKAIDACMQDLQSFEEQL 121
>gi|209879369|ref|XP_002141125.1| RNA polymerase II subunit RPB11 [Cryptosporidium muris RN66]
gi|209556731|gb|EEA06776.1| RNA polymerase II subunit RPB11, putative [Cryptosporidium muris
RN66]
Length = 121
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
++ E++++VP F + EDHTLGN++R QLL+DP V+FA YK PHPLE +RIQT
Sbjct: 23 RVKWEVESRVPCCGSFMIMLEDHTLGNLLRTQLLRDPSVIFAAYKVPHPLEPMVQIRIQT 82
Query: 64 TAESTPHDALMNAITDLLAE 83
+TP A+ NAI +LAE
Sbjct: 83 RETTTPFVAMQNAIQMILAE 102
>gi|71668504|ref|XP_821132.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886501|gb|EAN99281.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 133
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 6/95 (6%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RKI +E+ +K+PN+++F ++KEDHTL N++R +L +D V AGY+ PHP +H+ LR+Q
Sbjct: 27 RKITEEISSKMPNSSLFKLDKEDHTLANLLRMKLHEDALVHIAGYRVPHPTQHRVELRVQ 86
Query: 63 TTAES------TPHDALMNAITDLLAELSLFEERF 91
T+++ +P DAL+ AI + +L FEE+
Sbjct: 87 TSSDGSGRPIPSPKDALLKAIDACMQDLQSFEEQL 121
>gi|6324569|ref|NP_014638.1| Rpb11p [Saccharomyces cerevisiae S288c]
gi|730605|sp|P38902.1|RPB11_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB11;
Short=RNA polymerase II subunit B11; AltName:
Full=B13.6; AltName: Full=DNA-directed RNA polymerase II
13.6 kDa polypeptide
gi|14278332|pdb|1I3Q|K Chain K, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278343|pdb|1I50|K Chain K, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278373|pdb|1I6H|K Chain K, Rna Polymerase Ii Elongation Complex
gi|20150721|pdb|1K83|K Chain K, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749626|pdb|1NIK|K Chain K, Wild Type Rna Polymerase Ii
gi|30749747|pdb|1NT9|K Chain K, Complete 12-Subunit Rna Polymerase Ii
gi|34810563|pdb|1PQV|K Chain K, Rna Polymerase Ii-Tfiis Complex
gi|46015423|pdb|1R5U|K Chain K, Rna Polymerase Ii Tfiib Complex
gi|46015788|pdb|1SFO|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965919|pdb|1R9S|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965931|pdb|1R9T|K Chain K, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966115|pdb|1TWA|K Chain K, Rna Polymerase Ii Complexed With Atp
gi|56966129|pdb|1TWC|K Chain K, Rna Polymerase Ii Complexed With Gtp
gi|56966139|pdb|1TWF|K Chain K, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966149|pdb|1TWG|K Chain K, Rna Polymerase Ii Complexed With Ctp
gi|56966159|pdb|1TWH|K Chain K, Rna Polymerase Ii Complexed With 2'datp
gi|58177174|pdb|1WCM|K Chain K, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679454|pdb|1Y1W|K Chain K, Complete Rna Polymerase Ii Elongation Complex
gi|61679471|pdb|1Y77|K Chain K, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679512|pdb|1Y1V|K Chain K, Refined Rna Polymerase Ii-tfiis Complex
gi|61679525|pdb|1Y1Y|K Chain K, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754253|pdb|2B63|K Chain K, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590864|pdb|2B8K|K Chain K, 12-Subunit Rna Polymerase Ii
gi|122920069|pdb|2E2H|K Chain K, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920084|pdb|2E2I|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920099|pdb|2E2J|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921038|pdb|2NVQ|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921074|pdb|2NVT|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921090|pdb|2NVX|K Chain K, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921105|pdb|2NVY|K Chain K, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921117|pdb|2NVZ|K Chain K, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104684|pdb|2JA5|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104699|pdb|2JA6|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104720|pdb|2JA7|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104732|pdb|2JA7|W Chain W, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104744|pdb|2JA8|K Chain K, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387192|pdb|2YU9|K Chain K, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877783|pdb|2R7Z|K Chain K, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172237|pdb|2R92|K Chain K, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172250|pdb|2R93|K Chain K, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613472|pdb|2VUM|K Chain K, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368742|pdb|3CQZ|K Chain K, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983600|pdb|3FKI|K Chain K, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781924|pdb|3GTG|K Chain K, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781937|pdb|3GTJ|K Chain K, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781950|pdb|3GTK|K Chain K, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781963|pdb|3GTL|K Chain K, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781976|pdb|3GTM|K Chain K, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781990|pdb|3GTO|K Chain K, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239782003|pdb|3GTP|K Chain K, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782016|pdb|3GTQ|K Chain K, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104521|pdb|3H3V|L Chain L, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839451|pdb|3HOU|K Chain K, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839466|pdb|3HOU|W Chain W, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839481|pdb|3HOV|K Chain K, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839496|pdb|3HOW|K Chain K, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839511|pdb|3HOX|K Chain K, Complete Rna Polymerase Ii Elongation Complex V
gi|254839526|pdb|3HOY|K Chain K, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839541|pdb|3HOZ|K Chain K, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471956|pdb|3I4M|K Chain K, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471971|pdb|3I4N|K Chain K, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618775|pdb|3K1F|K Chain K, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914560|pdb|3K7A|K Chain K, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982483|pdb|3M3Y|K Chain K, Rna Polymerase Ii Elongation Complex C
gi|295982496|pdb|3M4O|K Chain K, Rna Polymerase Ii Elongation Complex B
gi|325053973|pdb|3PO2|K Chain K, Arrested Rna Polymerase Ii Elongation Complex
gi|325053988|pdb|3PO3|K Chain K, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634548|pdb|3QT1|K Chain K, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197464|pdb|3RZD|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197476|pdb|3RZO|K Chain K, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197488|pdb|3S14|K Chain K, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197500|pdb|3S15|K Chain K, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197512|pdb|3S16|K Chain K, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197524|pdb|3S17|K Chain K, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197536|pdb|3S1M|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197548|pdb|3S1N|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197560|pdb|3S1Q|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197572|pdb|3S1R|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197584|pdb|3S2D|K Chain K, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781205|pdb|3S2H|K Chain K, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251643|pdb|3J0K|K Chain K, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380846|pdb|4A3C|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546300|pdb|4A3B|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546318|pdb|4A3D|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546335|pdb|4A3E|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546352|pdb|4A3F|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546369|pdb|4A3J|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546386|pdb|4A3K|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546402|pdb|4A3L|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546419|pdb|4A3M|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977889|pdb|4A3G|K Chain K, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977904|pdb|4A3I|K Chain K, Rna Polymerase Ii Binary Complex With Dna
gi|380764989|pdb|4A93|K Chain K, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145456|pdb|4BBR|K Chain K, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145469|pdb|4BBS|K Chain K, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|386198|gb|AAB27135.1| RNA polymerase II subunit RPB11 [Saccharomyces cerevisiae]
gi|1419769|emb|CAA99004.1| RPB11 [Saccharomyces cerevisiae]
gi|45269886|gb|AAS56324.1| YOL005C [Saccharomyces cerevisiae]
gi|151945625|gb|EDN63866.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190407337|gb|EDV10604.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
gi|256273996|gb|EEU08912.1| Rpb11p [Saccharomyces cerevisiae JAY291]
gi|285814885|tpg|DAA10778.1| TPA: Rpb11p [Saccharomyces cerevisiae S288c]
gi|323303058|gb|EGA56861.1| Rpb11p [Saccharomyces cerevisiae FostersB]
gi|323307116|gb|EGA60399.1| Rpb11p [Saccharomyces cerevisiae FostersO]
gi|323331712|gb|EGA73126.1| Rpb11p [Saccharomyces cerevisiae AWRI796]
gi|323335698|gb|EGA76981.1| Rpb11p [Saccharomyces cerevisiae Vin13]
gi|323352374|gb|EGA84909.1| Rpb11p [Saccharomyces cerevisiae VL3]
gi|349581161|dbj|GAA26319.1| K7_Rpb11p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763240|gb|EHN04770.1| Rpb11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296328|gb|EIW07430.1| Rpb11p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 120
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 51/82 (62%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK PNA + T KEDHTLGN+IR +LL D VLFA YK HP +F LRIQTT P
Sbjct: 24 DTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
DAL NA ++ +L + F
Sbjct: 84 KDALKNACNSIINKLGALKTNF 105
>gi|255712823|ref|XP_002552694.1| KLTH0C10934p [Lachancea thermotolerans]
gi|238934073|emb|CAR22256.1| KLTH0C10934p [Lachancea thermotolerans CBS 6340]
Length = 122
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 52/82 (63%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK PNA I T KEDHTL N+IR +LL+D VLFA YK HPL +F LRIQT P
Sbjct: 24 DTKAPNAVIVTFEKEDHTLANLIRGELLEDKGVLFAAYKVEHPLFAQFKLRIQTVEGYDP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
DAL NA ++++L + F
Sbjct: 84 KDALKNACNGIISKLGQLQSNF 105
>gi|407921830|gb|EKG14968.1| DNA-directed RNA polymerase Rpb11 13-16kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 121
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ + DT+VPN AIFT NKEDHTL N++ +L K +V FAGY+ PHPL F LR+
Sbjct: 17 KKVEMKHDTRVPNTAIFTFNKEDHTLANLLTARLHKYKYVSFAGYRVPHPLFASFELRVG 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T P +A++NA D++ +L +F F
Sbjct: 77 TDGTVAPKEAIVNACRDVVQDLEVFSREF 105
>gi|426357388|ref|XP_004046024.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-a-like
[Gorilla gorilla gorilla]
Length = 113
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 35 QLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
QLLKDP VLFAGYK PHPLEHK I+R+QTT + +P +A NAIT+L++ELSL EE F
Sbjct: 3 QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITNLISELSLLEECF 59
>gi|71754779|ref|XP_828304.1| DNA-directed RNA polymerase II [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833690|gb|EAN79192.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261334129|emb|CBH17123.1| DNA-directed RNA polymerase II, putative [Trypanosoma brucei
gambiense DAL972]
Length = 132
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 66/96 (68%), Gaps = 6/96 (6%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
RKI++E+ +K+PN+++F +++EDHTL N++R +L ++P V AGY+ PHP +H+ LR+
Sbjct: 25 CRKIVEEVSSKMPNSSLFKLDREDHTLANLLRMRLHENPLVHIAGYRVPHPTQHRVELRV 84
Query: 62 QTTAES------TPHDALMNAITDLLAELSLFEERF 91
QT+++ TP +AL+ A+ + +L FE F
Sbjct: 85 QTSSDGTGKPIPTPKEALLEAVGSCMKDLEEFEGAF 120
>gi|321251977|ref|XP_003192244.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide [Cryptococcus
gattii WM276]
gi|317458712|gb|ADV20457.1| DNA-directed RNA polymerase ii 13.3 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 162
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 56/82 (68%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D K+PNA+ + ++DHTLGNM+R QL+ DP VLFAGYK PHPLE+ +L+IQT S P
Sbjct: 24 DPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSNP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL A +L+ + + +F
Sbjct: 84 AEALKRACHELIRQTVHIKAQF 105
>gi|405118462|gb|AFR93236.1| DNA-directed RNA polymerase II kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 162
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 56/82 (68%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D K+PNA+ + ++DHTLGNM+R QL+ DP VLFAGYK PHPLE+ +L+IQT S P
Sbjct: 24 DPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSNP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL A +L+ + + +F
Sbjct: 84 AEALKRACHELIRQTVHIKAQF 105
>gi|58263494|ref|XP_569157.1| DNA-directed RNA polymerase ii 13.3 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134108320|ref|XP_777111.1| hypothetical protein CNBB3430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259796|gb|EAL22464.1| hypothetical protein CNBB3430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223807|gb|AAW41850.1| DNA-directed RNA polymerase ii 13.3 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 162
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 56/82 (68%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D K+PNA+ + ++DHTLGNM+R QL+ DP VLFAGYK PHPLE+ +L+IQT S P
Sbjct: 24 DPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSNP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL A +L+ + + +F
Sbjct: 84 AEALKRACHELIRQTVHIKAQF 105
>gi|259149481|emb|CAY86285.1| Rpb11p [Saccharomyces cerevisiae EC1118]
Length = 120
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 51/82 (62%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK PNA + T KEDHTLGN+IR +LL D VLFA YK HP +F LR+QTT P
Sbjct: 24 DTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRVQTTEGYDP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
DAL NA ++ +L + F
Sbjct: 84 KDALKNACNSIINKLGALKTNF 105
>gi|50286733|ref|XP_445796.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525102|emb|CAG58715.1| unnamed protein product [Candida glabrata]
Length = 120
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 51/82 (62%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK PNA + T KEDHTLGN+IR +LL D VLFA YK HP +F LRIQT P
Sbjct: 24 DTKAPNAVVITFEKEDHTLGNLIRAELLNDNKVLFAAYKVEHPFFARFKLRIQTVEGYDP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
DAL NA + ++ +L + F
Sbjct: 84 KDALRNACSSIINKLGALKSNF 105
>gi|367005132|ref|XP_003687298.1| hypothetical protein TPHA_0J00410 [Tetrapisispora phaffii CBS 4417]
gi|357525602|emb|CCE64864.1| hypothetical protein TPHA_0J00410 [Tetrapisispora phaffii CBS 4417]
Length = 120
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 53/84 (63%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
E DTK NA + T KEDHTLGN+IRN+LL D VLFA YK HPL +F LRIQT
Sbjct: 22 EQDTKAANAVVITFEKEDHTLGNLIRNELLNDEKVLFAAYKVEHPLFARFKLRIQTEENY 81
Query: 68 TPHDALMNAITDLLAELSLFEERF 91
P DAL A +++ +L + + F
Sbjct: 82 DPKDALKMACNNIINKLGILKTNF 105
>gi|224007319|ref|XP_002292619.1| probable dna-directed RNA polymerase II 13.6 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
gi|220971481|gb|EED89815.1| probable dna-directed RNA polymerase II 13.6 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
Length = 124
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
KI + DTKV NA FT NKEDHT+ N++R QLL+DP V FAGY PHPL HK L+IQ
Sbjct: 17 EKIEYQPDTKVSNAGTFTFNKEDHTVANLLRMQLLRDPAVKFAGYMHPHPLIHKIHLKIQ 76
Query: 63 -TTAESTPHDALMNAITDLLAE 83
TT++ P + L AI DL E
Sbjct: 77 TTTSQVAPAETLSAAIEDLSNE 98
>gi|444320463|ref|XP_004180888.1| hypothetical protein TBLA_0E03150 [Tetrapisispora blattae CBS 6284]
gi|387513931|emb|CCH61369.1| hypothetical protein TBLA_0E03150 [Tetrapisispora blattae CBS 6284]
Length = 118
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 53/84 (63%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
E DTK PN + T KEDHTLGN+I+++LL DP VLFA YK HPL +F +RIQT
Sbjct: 22 EPDTKAPNTVVITFEKEDHTLGNLIKSELLHDPKVLFAAYKVEHPLFARFKMRIQTVEGY 81
Query: 68 TPHDALMNAITDLLAELSLFEERF 91
P DAL A ++ +L + + F
Sbjct: 82 DPKDALRKACNSIIKKLGILKTNF 105
>gi|340058381|emb|CCC52737.1| putative DNA-directed RNA polymerase II [Trypanosoma vivax Y486]
Length = 132
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RKI++E+ +K+PN+++F ++KEDHTL N++R +L ++ V AGY+ PHP +H+ LR+Q
Sbjct: 26 RKIVEEVSSKMPNSSLFKIDKEDHTLANLLRMRLHENSLVRIAGYRVPHPTQHRVELRVQ 85
Query: 63 TTAES------TPHDALMNAITDLLAELSLFEE 89
T ++ TP +AL+ A+ + +L FEE
Sbjct: 86 TASDGSGRAIPTPKEALLEAVDGCMKDLQTFEE 118
>gi|219122878|ref|XP_002181764.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407040|gb|EEC46978.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 125
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RKI+ DTKV NA F +NKEDHT+ N++R QLL+DP V FAGY PHPL + L++Q
Sbjct: 19 RKIVYTTDTKVTNAGTFRLNKEDHTVLNLLRMQLLRDPGVRFAGYIHPHPLINYMELKVQ 78
Query: 63 T-TAESTPHDALMNAITDLLAE 83
T ++ ++P + L NAI DL +E
Sbjct: 79 TNSSHTSPTEVLSNAIEDLGSE 100
>gi|396457950|ref|XP_003833588.1| hypothetical protein LEMA_P063490.1 [Leptosphaeria maculans JN3]
gi|312210136|emb|CBX90223.1| hypothetical protein LEMA_P063490.1 [Leptosphaeria maculans JN3]
Length = 163
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 57/88 (64%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ + +T+VP+ AIFT NKEDHTLGN++ +LLK V+FA YK PHPL F LR+QT
Sbjct: 51 KVETKEETRVPHTAIFTFNKEDHTLGNLLSQRLLKYDQVMFAAYKVPHPLFAMFELRVQT 110
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
TP DA++ D++ +L + F
Sbjct: 111 DGSITPKDAVVRCCRDVVQDLQKLNDSF 138
>gi|323346625|gb|EGA80911.1| Rpb11p [Saccharomyces cerevisiae Lalvin QA23]
Length = 120
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 50/82 (60%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK PNA + T KEDHTLGN+IR +LL D VLFA YK HP +F LR QTT P
Sbjct: 24 DTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRXQTTEGYDP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
DAL NA ++ +L + F
Sbjct: 84 KDALKNACNSIINKLGALKTNF 105
>gi|50305029|ref|XP_452472.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641605|emb|CAH01323.1| KLLA0C06160p [Kluyveromyces lactis]
Length = 121
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 55/88 (62%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E DTK +A I T KEDHTLGN+IR +LL+D VLFA YK HPL KF +RIQT
Sbjct: 18 KLKVEQDTKASSAIIVTFEKEDHTLGNLIRAELLEDEGVLFAAYKVEHPLFAKFKMRIQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
P DAL NA ++ +L+ + F
Sbjct: 78 VEGYDPKDALKNACNSIINKLAQLQSNF 105
>gi|238579202|ref|XP_002388973.1| hypothetical protein MPER_11952 [Moniliophthora perniciosa FA553]
gi|215450762|gb|EEB89903.1| hypothetical protein MPER_11952 [Moniliophthora perniciosa FA553]
Length = 151
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 50/82 (60%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK+PNA + K+DHTL M+R QLL P VLFAGYK PHPL FI++IQT TP
Sbjct: 24 DTKIPNAGTIKIVKQDHTLAGMLRAQLLSMPQVLFAGYKVPHPLHPYFIIKIQTDGSITP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
L A ++ L+ E +F
Sbjct: 84 EAILEQAALKVIGTLASLEAKF 105
>gi|410074997|ref|XP_003955081.1| hypothetical protein KAFR_0A05110 [Kazachstania africana CBS 2517]
gi|372461663|emb|CCF55946.1| hypothetical protein KAFR_0A05110 [Kazachstania africana CBS 2517]
Length = 122
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK PNA + T KEDHTLGN+IR +LL D VLFA YK HP +F LR+QT P
Sbjct: 24 DTKSPNAVVITFEKEDHTLGNLIRAELLNDTKVLFAAYKVEHPFFARFKLRVQTIEGYDP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
+AL NA ++ +L + + F
Sbjct: 84 KEALKNACNSIINKLGILKTNF 105
>gi|358054586|dbj|GAA99512.1| hypothetical protein E5Q_06213 [Mixia osmundae IAM 14324]
Length = 148
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E D +VPNAA + KEDHT+GNM+R QLL P+V+FAGY+ PHPL+ +LRIQ
Sbjct: 21 KVAIEEDPRVPNAATVIIKKEDHTIGNMLRGQLLHIPYVVFAGYRVPHPLQADVVLRIQV 80
Query: 64 TAE---STPHDALMNAITDLL 81
+ TP AL A +L+
Sbjct: 81 DGKDSSQTPTTALQTATRELI 101
>gi|365984675|ref|XP_003669170.1| hypothetical protein NDAI_0C02670 [Naumovozyma dairenensis CBS 421]
gi|343767938|emb|CCD23927.1| hypothetical protein NDAI_0C02670 [Naumovozyma dairenensis CBS 421]
Length = 122
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 51/82 (62%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK PNA + T KEDHTLGN+IR++LL D VLFA YK HP F LRIQT P
Sbjct: 24 DTKAPNAVVITFQKEDHTLGNLIRSELLNDGKVLFAAYKVEHPFFANFKLRIQTVEGYDP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
AL NA +++ +L + + F
Sbjct: 84 KLALKNACNNIINKLGILKTNF 105
>gi|45185683|ref|NP_983399.1| ACL005Cp [Ashbya gossypii ATCC 10895]
gi|44981438|gb|AAS51223.1| ACL005Cp [Ashbya gossypii ATCC 10895]
gi|374106605|gb|AEY95514.1| FACL005Cp [Ashbya gossypii FDAG1]
Length = 122
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 55/88 (62%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ E DTK NA I T KEDHTLGN+IR +LL+D VLFA YK HPL +F +RIQT
Sbjct: 18 KLKIEPDTKAANAVIITFEKEDHTLGNIIRAELLEDERVLFAAYKVEHPLFARFRMRIQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
P +AL NA ++ +L+ + F
Sbjct: 78 AEGYDPKEALKNACNSIINKLATLKSNF 105
>gi|334185913|ref|NP_001190064.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
gi|332645369|gb|AEE78890.1| DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana]
Length = 146
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 30/119 (25%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILR-- 60
+K+ + DTK+ NAA FTV +EDHT+GN++R QL +D +VLFAGY+ PHPL++K I+R
Sbjct: 17 KKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRDP 76
Query: 61 ----------------------------IQTTAESTPHDALMNAITDLLAELSLFEERF 91
I TT++S+P A AI DL EL + +F
Sbjct: 77 KDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQAINDLDKELDYLKNQF 135
>gi|159471075|ref|XP_001693682.1| DNA-directed RNA polymerase II, 13.6 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158283185|gb|EDP08936.1| DNA-directed RNA polymerase II, 13.6 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 115
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 56/89 (62%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RK+ + DTK+ +A FT EDHT+GN++R QL D +FAGY+ PHPLE ++++Q
Sbjct: 17 RKVKYKADTKLKDAGTFTFRSEDHTIGNLLRMQLHADKSTVFAGYRIPHPLEPVMVVKVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + DA+M+A+ DL E + E F
Sbjct: 77 TNGTKSCEDAMMHALEDLANEYHIMLEEF 105
>gi|126654283|ref|XP_001388406.1| RNA polymerase II [Cryptosporidium parvum Iowa II]
gi|126117499|gb|EAZ51599.1| RNA polymerase II, putative [Cryptosporidium parvum Iowa II]
Length = 115
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 56/88 (63%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
++ +++++VP F + EDHTLGN+I QLL+DP+V+FAGYK PHPLE +RIQT
Sbjct: 17 RVQWKVESRVPCCGSFMIMLEDHTLGNLITTQLLRDPNVIFAGYKVPHPLEPLVQIRIQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+TP A+ NAI + E + F
Sbjct: 77 RENTTPFVAIQNAIKSIQMESQVILNSF 104
>gi|159123105|gb|EDP48225.1| DNA-directed RNA polymerase II subunit RPB11a, putative
[Aspergillus fumigatus A1163]
Length = 229
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 34/113 (30%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYK------------------------ 48
+P+++IFT NKEDHTLGN++R++LL++ HV+FAGYK
Sbjct: 93 IPSSSIFTFNKEDHTLGNLLRSRLLQNSHVIFAGYKVCPPMEAVFSSILFEVLGAFLESF 152
Query: 49 ----------QPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
PHPL KF LR+QT E TP DAL+ A DL+ +L + F
Sbjct: 153 GMHGSDELSQVPHPLVPKFELRVQTDGEITPKDALLAACHDLVKDLGILSREF 205
>gi|302831972|ref|XP_002947551.1| hypothetical protein VOLCADRAFT_103489 [Volvox carteri f.
nagariensis]
gi|300267415|gb|EFJ51599.1| hypothetical protein VOLCADRAFT_103489 [Volvox carteri f.
nagariensis]
Length = 120
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 57/89 (64%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RK+ + DTK+ +A F+ EDHT+GN++R QL D ++FAGY+ PHPLE ++++Q
Sbjct: 17 RKVNYKADTKLKDAGTFSFRSEDHTMGNLLRMQLHSDKAMVFAGYRIPHPLEPVMVVKVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T +P +A+++A+ DL +E F
Sbjct: 77 TNGTKSPEEAMVHALQDLASEFGYMLNEF 105
>gi|169601826|ref|XP_001794335.1| hypothetical protein SNOG_03789 [Phaeosphaeria nodorum SN15]
gi|160706019|gb|EAT88994.2| hypothetical protein SNOG_03789 [Phaeosphaeria nodorum SN15]
Length = 203
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDA 72
VPN IFT NKEDHTLGN+I +LLK P++ F+ YK PHPL F LR+ T TP DA
Sbjct: 100 VPNTGIFTFNKEDHTLGNLISQRLLKYPYITFSAYKVPHPLFATFELRVSTDGSITPKDA 159
Query: 73 LMNAITDLLAELSLFEERF 91
++ ++ +L + F
Sbjct: 160 IIACCRQVVQDLEDLKRSF 178
>gi|160331498|ref|XP_001712456.1| rpb11 [Hemiselmis andersenii]
gi|159765904|gb|ABW98131.1| rpb11 [Hemiselmis andersenii]
Length = 106
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 55/88 (62%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
++KI D K N F + KEDHTLG++I ++LLK+ V+F+GYK+PHPLEH L+I
Sbjct: 17 LQKITFYKDEKNKNCGYFKIEKEDHTLGHLIHSKLLKEKSVIFSGYKRPHPLEHFIYLKI 76
Query: 62 QTTAESTPHDALMNAITDLLAELSLFEE 89
T +P DA + + DL E S E+
Sbjct: 77 ITDGVFSPKDAFDSVLKDLYIEFSYLED 104
>gi|146090865|ref|XP_001466380.1| DNA-directed RNA polymerase II-like protein [Leishmania infantum
JPCM5]
gi|134070742|emb|CAM69097.1| DNA-directed RNA polymerase II-like protein [Leishmania infantum
JPCM5]
Length = 134
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 6/95 (6%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RKI++++ + N+++F + KEDHTL N++R +L + P V AGY+ PHP +H LR+Q
Sbjct: 26 RKIVEQISNTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQ 85
Query: 63 TTAEST------PHDALMNAITDLLAELSLFEERF 91
T + T P AL +AI L +L +FEE+
Sbjct: 86 TASNGTDAPVPAPKKALQDAINGCLKDLEVFEEQL 120
>gi|154339938|ref|XP_001565926.1| DNA-directed RNA polymerase II-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134063244|emb|CAM45446.1| DNA-directed RNA polymerase II-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 134
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 6/95 (6%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RKI++++ + N+++F + KEDHTL N++R +L + P V AGY+ PHP +H LR+Q
Sbjct: 26 RKIVEQISNTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQ 85
Query: 63 TTAEST------PHDALMNAITDLLAELSLFEERF 91
T + T P AL +AI L +L +FEE+
Sbjct: 86 TGSNGTDTPIPAPKKALQDAIDGCLKDLEMFEEQL 120
>gi|226470082|emb|CAX70322.1| hypotherical protein [Schistosoma japonicum]
Length = 66
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 31 MIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEER 90
MI QLLKDP VLFAGYK PHPLEHK ++R+ T +TP D ++A+ DL++E+S EE+
Sbjct: 1 MITCQLLKDPRVLFAGYKAPHPLEHKIVIRVHTAHPATPVDVFVSALKDLISEISNIEEQ 60
Query: 91 F 91
F
Sbjct: 61 F 61
>gi|398017622|ref|XP_003861998.1| DNA-directed RNA polymerase II-like protein [Leishmania donovani]
gi|401424491|ref|XP_003876731.1| DNA-directed RNA polymerase II-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492974|emb|CBZ28256.1| DNA-directed RNA polymerase II-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322500226|emb|CBZ35303.1| DNA-directed RNA polymerase II-like protein [Leishmania donovani]
Length = 134
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 6/95 (6%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RKI++++ + N+++F + KEDHTL N++R +L + P V AGY+ PHP +H LR+Q
Sbjct: 26 RKIVEQISNTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQ 85
Query: 63 TTAEST------PHDALMNAITDLLAELSLFEERF 91
T + T P AL +AI L +L +FEE+
Sbjct: 86 TASNGTDAPVPAPKKALQDAIDGCLKDLEVFEEQL 120
>gi|412986323|emb|CCO14749.1| predicted protein [Bathycoccus prasinos]
Length = 118
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 57/89 (64%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RK+ DTK+ NA F + +EDHTLGNM+R +L DP+V+FAGY+ PHP +H+ ++++
Sbjct: 17 RKLSYTPDTKLANAGEFVLMREDHTLGNMLRMELHNDPNVVFAGYQHPHPTDHRILIKVH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T E+ P A+ A L ++ + ++
Sbjct: 77 TNGETNPVRAMREANQRLTEQVESLKTQW 105
>gi|413937799|gb|AFW72350.1| hypothetical protein ZEAMMB73_315029 [Zea mays]
Length = 75
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 48/59 (81%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
+K+ E DTK+ NAA FTV + DHT+GN++R QL +DP+VLFAGYK PHPL++K I+R+
Sbjct: 17 KKVSYERDTKIVNAASFTVERVDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRV 75
>gi|403360631|gb|EJY79996.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 114
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K I D +V + T+ EDH+LGN++R QLL +P V F+GY++PHPLE +++Q
Sbjct: 8 QKFIYTDDNRVRHQGTLTIKDEDHSLGNLVRQQLLHNPKVKFSGYRKPHPLEEYVEIKVQ 67
Query: 63 TTAESTPHDALMNAITDLLAEL 84
TT E +P D+++ A LL+++
Sbjct: 68 TTGEVSPPDSIIMASEQLLSQM 89
>gi|389593419|ref|XP_003721963.1| DNA-directed RNA polymerase II-like protein [Leishmania major
strain Friedlin]
gi|321438465|emb|CBZ12222.1| DNA-directed RNA polymerase II-like protein [Leishmania major
strain Friedlin]
Length = 134
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 59/95 (62%), Gaps = 6/95 (6%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RKI++++ + N+++F + KEDHTL N++R +L + P V AGY+ PHP +H LR+Q
Sbjct: 26 RKIVEQISNTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQ 85
Query: 63 TTAEST------PHDALMNAITDLLAELSLFEERF 91
T + T P AL +A+ L +L +FEE+
Sbjct: 86 TASNGTDAPVPAPKKALQDAVDGCLKDLEVFEEQL 120
>gi|413937801|gb|AFW72352.1| hypothetical protein ZEAMMB73_926131 [Zea mays]
Length = 75
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 48/59 (81%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
+K+ E DTK+ NAA FT +EDHT+GN++R QL +DP+VLFAGYK PHPL++K I+R+
Sbjct: 17 KKVSYERDTKIVNAASFTDEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRV 75
>gi|440302854|gb|ELP95160.1| DNA-directed RNA polymerase II subunit RPB11, putative [Entamoeba
invadens IP1]
Length = 110
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
N FT KEDHT GNMIR +LL D HV+FAGY+QPHPL++ + I+T TP AL
Sbjct: 26 NVCKFTFVKEDHTAGNMIRVELLNDKHVIFAGYRQPHPLKYVIEMTIRTDGVITPKVALE 85
Query: 75 NAITDLLAELSLFEERF 91
NA+ ++ ++ L +E F
Sbjct: 86 NALDRIIRKVKLAKEDF 102
>gi|67470818|ref|XP_651372.1| RNA polymerases II subunit [Entamoeba histolytica HM-1:IMSS]
gi|56468094|gb|EAL45982.1| RNA polymerases II subunit, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407042561|gb|EKE41399.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Entamoeba nuttalli P19]
gi|449707159|gb|EMD46864.1| RNA polymerases II subunit, putative [Entamoeba histolytica KU27]
Length = 112
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
FT+ KEDHT GN++R LL++PHVLFAGY+QPHPL + + I+T TP AL A+
Sbjct: 30 FTLVKEDHTAGNILRVMLLRNPHVLFAGYRQPHPLNYVIEMTIRTDMTITPKQALEQAMD 89
Query: 79 DLLAELSLFEERF 91
D++ E+ + + F
Sbjct: 90 DVIHEIEIMQNEF 102
>gi|323452880|gb|EGB08753.1| hypothetical protein AURANDRAFT_25751 [Aureococcus anophagefferens]
Length = 136
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K++ D K+PNA FT+ KE HT+G++++ Q+L++ V + GYK PHPL++ ++++Q
Sbjct: 17 KKMVYANDEKIPNAGTFTIAKETHTVGHLLQMQVLRNNQVRYCGYKMPHPLQNSMLVKVQ 76
Query: 63 -TTAESTPHDALMNAITDLLAELSLFEERF 91
TT+++TP + A+ +L +E + + F
Sbjct: 77 TTTSKATPVAVVGAALAELQSECEVLDRSF 106
>gi|294948044|ref|XP_002785588.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239899567|gb|EER17384.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 58/89 (65%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
R+I E + + N FT+ EDHT + +R++LL++ V FAGYK PHPLE+K ++R+Q
Sbjct: 34 RRIYYEPELRQDNTGTFTIWLEDHTAAHALRSELLRNRQVKFAGYKVPHPLENKLLMRVQ 93
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T+++TP +A+ A+ L ++ E+ F
Sbjct: 94 VTSQTTPVEAMKEALKSLRSKGDQLEKEF 122
>gi|294883186|ref|XP_002769975.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239873898|gb|EER02672.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 58/89 (65%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
R+I E + + N FT+ EDHT + +R++LL++ V FAGYK PHPLE+K ++R+Q
Sbjct: 34 RRIYYEPELRQDNTGTFTIWLEDHTAAHALRSELLRNRQVKFAGYKVPHPLENKLLMRVQ 93
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T+++TP +A+ A+ L ++ E+ F
Sbjct: 94 VTSQTTPVEAMKEALKSLRSKGDQLEKEF 122
>gi|167377825|ref|XP_001734557.1| DNA-directed RNA polymerase II subunit RPB11 [Entamoeba dispar
SAW760]
gi|167384275|ref|XP_001736882.1| DNA-directed RNA polymerase II subunit RPB11 [Entamoeba dispar
SAW760]
gi|165900590|gb|EDR26886.1| DNA-directed RNA polymerase II subunit RPB11, putative [Entamoeba
dispar SAW760]
gi|165903881|gb|EDR29278.1| DNA-directed RNA polymerase II subunit RPB11, putative [Entamoeba
dispar SAW760]
Length = 112
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
FT KEDHT GN++R LL++PHVLFAGY+QPHPL + + I+T TP AL A+
Sbjct: 30 FTFVKEDHTAGNILRVMLLRNPHVLFAGYRQPHPLNYIIEMTIRTDTTITPKQALEQAMD 89
Query: 79 DLLAELSLFEERF 91
D++ E+ + + F
Sbjct: 90 DVIHEIEIMQNEF 102
>gi|303271317|ref|XP_003055020.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462994|gb|EEH60272.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 152
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
+RK+ DTKV NA F V KEDHTLGN +R QL +DP V+F+GY+ PHP +++ ++++
Sbjct: 16 VRKLTFTRDTKVANAGTFVVQKEDHTLGNAVRMQLHRDPEVVFSGYQVPHPSDNRIVIKV 75
Query: 62 QTTAEST 68
+ + +
Sbjct: 76 RAASAQS 82
>gi|221487866|gb|EEE26098.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Toxoplasma gondii GT1]
Length = 178
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DT+ P F + ED+T+G +IRN LL DP V F G +QPHPLE K LRIQT + S+P
Sbjct: 31 DTRFPLCGTFVFHLEDYTIGYIIRNDLLNDPRVKFVGLRQPHPLEPKIELRIQTVS-SSP 89
Query: 70 HDALMNAITDLLAELSLFEERF 91
++ ++ A LSL + RF
Sbjct: 90 FTLVLESLRKRKAGLSLLKARF 111
>gi|356516832|ref|XP_003527097.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB11-like
[Glycine max]
Length = 90
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 47/61 (77%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E DTK+ NAA FT+ +E+HT+ N++R QL +DP+VLF GYK PHPL++K I+R Q
Sbjct: 17 KKVSYERDTKIINAASFTIEREEHTIDNILRMQLHRDPNVLFVGYKLPHPLQYKIIVREQ 76
Query: 63 T 63
Sbjct: 77 V 77
>gi|237830945|ref|XP_002364770.1| RNA polymerase II subunit RPB11, putative [Toxoplasma gondii ME49]
gi|211962434|gb|EEA97629.1| RNA polymerase II subunit RPB11, putative [Toxoplasma gondii ME49]
gi|221507649|gb|EEE33253.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 178
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DT+ P F + ED+T+G +IRN LL DP V F G +QPHPLE K LRIQT + S P
Sbjct: 31 DTRFPLCGTFVFHLEDYTIGYIIRNDLLNDPRVKFVGLRQPHPLEPKIELRIQTVS-SNP 89
Query: 70 HDALMNAITDLLAELSLFEERF 91
++ ++ A LSL + RF
Sbjct: 90 FTLVLESLRKRKAGLSLLKARF 111
>gi|154321049|ref|XP_001559840.1| hypothetical protein BC1G_01399 [Botryotinia fuckeliana B05.10]
Length = 80
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 43/61 (70%)
Query: 31 MIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEER 90
M+R LLKDPHV+F+GYK PHPL KF LRIQT E TP +AL+ +L++EL +F
Sbjct: 1 MLRAHLLKDPHVIFSGYKIPHPLFSKFELRIQTDGEITPKEALVACCRNLVSELEVFSRE 60
Query: 91 F 91
F
Sbjct: 61 F 61
>gi|145487466|ref|XP_001429738.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124396832|emb|CAK62340.1| unnamed protein product [Paramecium tetraurelia]
Length = 129
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
++I E + K+ NA + EDHT+GN+ R LLK V F+GY+Q HPL+H +++QT
Sbjct: 26 RVILEDEKKMNNACCVKLYLEDHTIGNLTRMNLLKQKEVTFSGYRQIHPLQHTIEIKVQT 85
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
P+DA+ DL E EE +
Sbjct: 86 NGSIKPYDAIQKTFQDLSDEFKNLEEEW 113
>gi|71026805|ref|XP_763046.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68349999|gb|EAN30763.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 133
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DT+ P F V+ EDHT G++IR++L KD V F GY+ PHPLE+K +RI+T ++ P
Sbjct: 31 DTRFPLCGTFIVHLEDHTFGSLIRSKLSKDDRVTFVGYRMPHPLENKLEIRIRTKTDN-P 89
Query: 70 HDALMNAITDLLAELS 85
+++AIT+L LS
Sbjct: 90 FTVILSAITNLRTNLS 105
>gi|388579813|gb|EIM20133.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wallemia sebi CBS 633.66]
Length = 136
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT-TAEST 68
D+++ + + T+N++DHT+ N++ N++ KD +V+F+GY+ PHPL K +R+QT T
Sbjct: 24 DSRISSTSTITLNRQDHTIANLLSNEISKDKNVVFSGYRVPHPLNPKSEIRVQTLNGTVT 83
Query: 69 PHDALMNAITDLLAELSLFEERF 91
P + L +A T LLA+ F++
Sbjct: 84 PKECLKDAATRLLADCGTFQDEL 106
>gi|330040637|ref|XP_003239979.1| DNA-directed RNA polymerase II complex subunit Rpb11 [Cryptomonas
paramecium]
gi|327206905|gb|AEA39081.1| DNA-directed RNA polymerase II complex subunit Rpb11 [Cryptomonas
paramecium]
Length = 101
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 50/87 (57%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RKI D N F + EDHT+G++I+ QLLK P V+F+GYK+ HPLE L+I
Sbjct: 10 RKIEFYKDKDNVNYGSFRIKNEDHTIGSLIQKQLLKHPDVIFSGYKKFHPLEKYIFLKII 69
Query: 63 TTAESTPHDALMNAITDLLAELSLFEE 89
T TP L + + DL + SL EE
Sbjct: 70 TNGHKTPIQVLDSVLKDLYIQFSLLEE 96
>gi|213402453|ref|XP_002171999.1| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces japonicus yFS275]
gi|212000046|gb|EEB05706.1| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces japonicus yFS275]
Length = 123
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+ F + KEDHTLGN +R ++K+P V F GY PHP E K LRIQT + +T DAL
Sbjct: 34 SVTFQIQKEDHTLGNALRYMIMKNPDVEFCGYSIPHPSEAKMNLRIQTKSTTTAIDALKK 93
Query: 76 AITDLLAELSLFEERF 91
+ DL+ + E F
Sbjct: 94 GLDDLMDLCDVVTESF 109
>gi|440465860|gb|ELQ35160.1| hypothetical protein OOU_Y34scaffold00725g18 [Magnaporthe oryzae
Y34]
gi|440486473|gb|ELQ66334.1| hypothetical protein OOW_P131scaffold00400g21 [Magnaporthe oryzae
P131]
Length = 170
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ + ++T + N + FT KEDHTLGNM+ L + P+VL AGYK HP +F LRIQT
Sbjct: 58 KLTETINTSMSNTSDFTFKKEDHTLGNMLTEHLKQHPNVLMAGYKVSHPNVPEFFLRIQT 117
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ TP L++A +L L F
Sbjct: 118 DGKVTPKACLLDACRTILHSLGQIRTEF 145
>gi|389623207|ref|XP_003709257.1| hypothetical protein MGG_02463 [Magnaporthe oryzae 70-15]
gi|351648786|gb|EHA56645.1| hypothetical protein MGG_02463 [Magnaporthe oryzae 70-15]
Length = 130
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ + ++T + N + FT KEDHTLGNM+ L + P+VL AGYK HP +F LRIQT
Sbjct: 18 KLTETINTSMSNTSDFTFKKEDHTLGNMLTEHLKQHPNVLMAGYKVSHPNVPEFFLRIQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ TP L++A +L L F
Sbjct: 78 DGKVTPKACLLDACRTILHSLGQIRTEF 105
>gi|344245738|gb|EGW01842.1| Ras GTPase-activating protein 4 [Cricetulus griseus]
Length = 1179
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTKVPNA +FT+NKEDHTLGN+I++ + Q H TT + +P
Sbjct: 1092 DTKVPNACLFTINKEDHTLGNIIKSGSCS------VDWTQTDSPYHGCRDPGHTTPDYSP 1145
Query: 70 HDALMNAITDLLAELSLFEERF 91
+A NAITDL++ELSL EERF
Sbjct: 1146 QEAFTNAITDLISELSLLEERF 1167
>gi|323331945|gb|EGA73357.1| Rpc19p [Saccharomyces cerevisiae AWRI796]
Length = 111
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ + ++ +A F + +EDHTLGN +R ++K+P V F GY PHP E+ +RIQT
Sbjct: 17 KLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E+T DAL + DL+ + E +F
Sbjct: 77 YGETTAVDALQKGLKDLMDLCDVVESKF 104
>gi|281200289|gb|EFA74510.1| putative RNA polymerase III subunit [Polysphondylium pallidum
PN500]
Length = 130
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
E+ + P+ A F EDHTLGN + L+K+P V F+GY PHP ++K LRIQT +
Sbjct: 19 EVISDRPDCATFIFVDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNKMNLRIQTKGNT 78
Query: 68 TPHDALMNAITDLLAELSLFEERF 91
T DA+MN ++D+ +ER
Sbjct: 79 TAQDAIMNGLSDIKDISQSVDERI 102
>gi|156835838|ref|XP_001642180.1| hypothetical protein Kpol_165p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112621|gb|EDO14322.1| hypothetical protein Kpol_165p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 128
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI+ + ++ A F + EDHTLGN +R ++K+P V F GY PHP E+ LRIQT
Sbjct: 34 KILPQATSEDGTCASFQIMDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENLLNLRIQT 93
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+T +AL + DL+ + EE+F
Sbjct: 94 YGSTTAVEALQKGLGDLMDMCDVVEEKF 121
>gi|385301731|gb|EIF45900.1| putative rna polymerase i and iii shared subunit rpc19 [Dekkera
bruxellensis AWRI1499]
Length = 144
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT E T DAL
Sbjct: 56 AAFQIIDEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKMNIRIQTYGEQTAVDALHKG 115
Query: 77 ITDLLAELSLFEERF 91
+ DL S E+ F
Sbjct: 116 LDDLSKLCSFIEDTF 130
>gi|410076614|ref|XP_003955889.1| hypothetical protein KAFR_0B04570 [Kazachstania africana CBS 2517]
gi|372462472|emb|CCF56754.1| hypothetical protein KAFR_0B04570 [Kazachstania africana CBS 2517]
Length = 131
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI+ + ++ +A F + +EDHTLGN +R ++K+P V F GY PHP E+ +RIQT
Sbjct: 37 KILPQATSEDGTSASFQIVEEDHTLGNALRYIIMKNPQVEFCGYSIPHPSENLLNIRIQT 96
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E T DAL + DL+ + EE F
Sbjct: 97 YGEITAVDALKKGLADLMDLCDVVEETF 124
>gi|366999324|ref|XP_003684398.1| hypothetical protein TPHA_0B02920 [Tetrapisispora phaffii CBS 4417]
gi|357522694|emb|CCE61964.1| hypothetical protein TPHA_0B02920 [Tetrapisispora phaffii CBS 4417]
Length = 130
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+A F +++EDHTLGN +R+ ++K+P V F GY PHP E LRIQT +T +AL
Sbjct: 48 SASFQISEEDHTLGNALRHIIMKNPEVEFCGYSIPHPSETLLNLRIQTYGNTTAVEALQK 107
Query: 76 AITDLLAELSLFEERF 91
+ DL+ + EE+F
Sbjct: 108 GLKDLMDMCDVVEEKF 123
>gi|323307474|gb|EGA60747.1| Rpc19p [Saccharomyces cerevisiae FostersO]
Length = 111
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+A F + +EDHTLGN +R ++K+P V F GY PHP E+ +RIQT E+T DAL
Sbjct: 29 SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 88
Query: 76 AITDLLAELSLFEERF 91
+ DL+ + E +F
Sbjct: 89 GLKDLMDLCDVVESKF 104
>gi|323303408|gb|EGA57204.1| Rpc19p [Saccharomyces cerevisiae FostersB]
Length = 111
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K + + ++ +A F + +EDHTLGN +R ++K+P V F GY PHP E+ +RIQT
Sbjct: 17 KFLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E+T DAL + DL+ + E +F
Sbjct: 77 YGETTAVDALQKGLKDLMDLCDVVESKF 104
>gi|85000057|ref|XP_954747.1| DNA-directed RNA polymerase II [Theileria annulata strain Ankara]
gi|65302893|emb|CAI75271.1| DNA-directed RNA polymerase II, putative [Theileria annulata]
Length = 124
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DT+ P F V+ EDHT G++IR +L KD V F GY+ PHPLE+K +RI+T ++ P
Sbjct: 31 DTRFPLCGTFIVHLEDHTFGSLIRTKLSKDDRVTFVGYRMPHPLENKLEIRIRTKTDN-P 89
Query: 70 HDALMNAITDLLAELS 85
+++AIT++ LS
Sbjct: 90 FTVILSAITNIRNNLS 105
>gi|6324215|ref|NP_014286.1| Rpc19p [Saccharomyces cerevisiae S288c]
gi|133371|sp|P28000.1|RPAC2_YEAST RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerases I
and III 16 kDa polypeptide; AltName: Full=RPA19
gi|172472|gb|AAA34998.1| AC19 RNA polymerase subunit [Saccharomyces cerevisiae]
gi|1183960|emb|CAA93394.1| Subunit of RNA polymerase I and III [Saccharomyces cerevisiae]
gi|1302037|emb|CAA95994.1| RPC19 [Saccharomyces cerevisiae]
gi|45269892|gb|AAS56327.1| YNL113W [Saccharomyces cerevisiae]
gi|151944423|gb|EDN62701.1| AC19 [Saccharomyces cerevisiae YJM789]
gi|190409101|gb|EDV12366.1| RNA polymerases I subunit [Saccharomyces cerevisiae RM11-1a]
gi|256273818|gb|EEU08740.1| Rpc19p [Saccharomyces cerevisiae JAY291]
gi|259149248|emb|CAY82490.1| Rpc19p [Saccharomyces cerevisiae EC1118]
gi|285814540|tpg|DAA10434.1| TPA: Rpc19p [Saccharomyces cerevisiae S288c]
gi|323335952|gb|EGA77230.1| Rpc19p [Saccharomyces cerevisiae Vin13]
gi|323346881|gb|EGA81160.1| Rpc19p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352551|gb|EGA85050.1| Rpc19p [Saccharomyces cerevisiae VL3]
gi|349580826|dbj|GAA25985.1| K7_Rpc19p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763575|gb|EHN05103.1| Rpc19p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296878|gb|EIW07979.1| Rpc19p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 142
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ + ++ +A F + +EDHTLGN +R ++K+P V F GY PHP E+ +RIQT
Sbjct: 48 KLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQT 107
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E+T DAL + DL+ + E +F
Sbjct: 108 YGETTAVDALQKGLKDLMDLCDVVESKF 135
>gi|402081162|gb|EJT76307.1| hypothetical protein GGTG_06227 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 130
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI + ++T + N + FT KEDHTLGN++ L + P+VL AGYK HP +F LRIQT
Sbjct: 18 KITETINTTMSNCSDFTFMKEDHTLGNLLCEHLKQQPNVLMAGYKVGHPNVPEFFLRIQT 77
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ TP L+ A ++ LS +F
Sbjct: 78 DGKVTPKVCLVEACRTIVQLLSQISSQF 105
>gi|401623947|gb|EJS42026.1| rpc19p [Saccharomyces arboricola H-6]
Length = 142
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ + ++ +A F + +EDHTLGN +R ++K+P V F GY PHP E+ +RIQT
Sbjct: 48 KLLTQATSEDGTSASFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQT 107
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E+T DAL + DL+ + E +F
Sbjct: 108 YGETTAVDALQKGLQDLMDLCDVVESKF 135
>gi|302663304|ref|XP_003023296.1| hypothetical protein TRV_02570 [Trichophyton verrucosum HKI 0517]
gi|291187286|gb|EFE42678.1| hypothetical protein TRV_02570 [Trichophyton verrucosum HKI 0517]
Length = 135
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 14/79 (17%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDA 72
VP+ AIFT NKEDHTLGN+IR++LL++ HVLF+GY+ T + TP +A
Sbjct: 48 VPSTAIFTFNKEDHTLGNLIRSRLLQNQHVLFSGYR--------------TDGQITPKEA 93
Query: 73 LMNAITDLLAELSLFEERF 91
++ A DL+ +L F F
Sbjct: 94 VLAACHDLVKDLGTFSREF 112
>gi|403223457|dbj|BAM41588.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 116
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DT+ P F V+ EDHT G++IR++L KD V F GY+ PHPLE+K +R++T ++ P
Sbjct: 31 DTRFPLCGTFIVHLEDHTFGSLIRSKLSKDDRVTFVGYRIPHPLENKLEIRLRTKMDN-P 89
Query: 70 HDALMNAITDLLAELS 85
+M+AI++L + +S
Sbjct: 90 FTVVMSAISNLRSNIS 105
>gi|428671107|gb|EKX72026.1| DNA-directed RNA polymerase II, putative [Babesia equi]
Length = 122
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
I+K+ DT+ P F V+ EDHT G +IR++L +D V F GY+ PHPLE+K +R+
Sbjct: 23 IKKVEWIPDTRFPLCGTFIVHLEDHTFGALIRSRLSRDERVTFVGYRIPHPLENKLEIRL 82
Query: 62 QTTAESTPHDALMNAITDLLAELS 85
+T +S P ++NAI+ L S
Sbjct: 83 RTKVDS-PFTVILNAISGLKGNFS 105
>gi|365988010|ref|XP_003670836.1| hypothetical protein NDAI_0F02750 [Naumovozyma dairenensis CBS 421]
gi|343769607|emb|CCD25593.1| hypothetical protein NDAI_0F02750 [Naumovozyma dairenensis CBS 421]
Length = 149
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI+++ ++ +A F + +EDHTLGN +R ++K+P V F GY PHP E +RIQT
Sbjct: 55 KILQQGASEDGCSASFQILQEDHTLGNALRYIIMKNPQVEFCGYSIPHPSEEFLNIRIQT 114
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E T +AL + DL+ + EE+F
Sbjct: 115 YGEITAVEALHKGLQDLMDLCDVVEEKF 142
>gi|346974639|gb|EGY18091.1| DNA-directed RNA polymerase II [Verticillium dahliae VdLs.17]
Length = 151
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI ++ + N + F + KEDHT+GN+I L HVL AGYK PHP + +R+Q
Sbjct: 42 KKIEEKPYAGMSNTSDFVIKKEDHTVGNLISEHLKMHQHVLMAGYKIPHPNVSEMFIRVQ 101
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP DA+ I DL+ + S + F
Sbjct: 102 TDGTITPKDAVTEVIKDLMKDFSHLAQEF 130
>gi|242211754|ref|XP_002471714.1| predicted protein [Postia placenta Mad-698-R]
gi|220729270|gb|EED83148.1| predicted protein [Postia placenta Mad-698-R]
Length = 89
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRN-QLLKDPHVLFAGYKQPHPLEHKFILRIQTTAEST 68
DTK+PNAA V K+DHTLGN+IR + D YK PHPL+ F+++IQT T
Sbjct: 4 DTKIPNAATIKVLKQDHTLGNLIRAYTTVVDAANFVCRYKVPHPLQPHFLIKIQTDGTIT 63
Query: 69 PHDALMNAITDLLAELSLFEERF 91
P L A T L+ ++ E +F
Sbjct: 64 PTAVLEQACTKLIGTMASLEAKF 86
>gi|328768812|gb|EGF78857.1| hypothetical protein BATDEDRAFT_12522 [Batrachochytrium
dendrobatidis JAM81]
Length = 99
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F ++ EDHTLGN +R ++K+P V F GY PHP E++ LRIQT T DAL
Sbjct: 3 GSATFCISNEDHTLGNALRYIIMKNPAVSFCGYSVPHPSEYQINLRIQTDGSITAVDALH 62
Query: 75 NAITDLLAELSLFEERF 91
+ DL+ + +E F
Sbjct: 63 KGLDDLVDMTTHVKESF 79
>gi|320582021|gb|EFW96240.1| RNA polymerase II core subunit [Ogataea parapolymorpha DL-1]
Length = 107
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAE 83
EDHTLGN+++ +L DP VLF YK HPL F++R+QT P AL NA T L+++
Sbjct: 22 EDHTLGNLLKQELANDPQVLFVAYKVEHPLFANFVMRLQTEEGYKPRIALKNACTRLISK 81
Query: 84 LSLFEERF 91
L + ++F
Sbjct: 82 LGILNDKF 89
>gi|50312213|ref|XP_456138.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645274|emb|CAG98846.1| KLLA0F23760p [Kluyveromyces lactis]
Length = 127
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ E ++ +A F + EDHTLGN +R ++K+P V F GY PHP E+ +RIQT
Sbjct: 33 KLLTEATSEDGTSASFRITDEDHTLGNTLRYMIMKNPEVEFCGYSIPHPSENFLHIRIQT 92
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ T +AL + DL+ E+RF
Sbjct: 93 YGKITAVEALHKGLGDLMDMCDAVEDRF 120
>gi|403217497|emb|CCK71991.1| hypothetical protein KNAG_0I02060 [Kazachstania naganishii CBS
8797]
Length = 134
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI+ E T+ A F + EDHTLGN +R ++K+P V F GY PHP E+ +RIQT
Sbjct: 40 KILPEATTEDGTCASFQILNEDHTLGNALRYVIMKNPEVEFCGYSIPHPSENWLNVRIQT 99
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ T DA + DL+ + E+ F
Sbjct: 100 YGKITAVDAFKKGLGDLMDMCDVVEDVF 127
>gi|444315668|ref|XP_004178491.1| hypothetical protein TBLA_0B01290 [Tetrapisispora blattae CBS
6284]
gi|387511531|emb|CCH58972.1| hypothetical protein TBLA_0B01290 [Tetrapisispora blattae CBS
6284]
Length = 102
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 6 IKELDTKVPN--AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
I++L P+ AA F + EDHTLGN +R L+++P V F GY PHP E LR+QT
Sbjct: 8 IRQLPPVTPDGSAASFQIRDEDHTLGNALRYLLMRNPAVEFCGYSIPHPSEPFLNLRVQT 67
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ T DAL + DL+ + E+ F
Sbjct: 68 YGDITASDALAQGLQDLMDLCDVVEDTF 95
>gi|340914788|gb|EGS18129.1| hypothetical protein CTHT_0061440 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 146
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ T + N + F + KEDHT+GN++ L + PHV+ AGYK HP + ++R+Q
Sbjct: 26 KKITEKVVTGMANTSDFIILKEDHTIGNLLSEHLKQAPHVMMAGYKIGHPNVPEVLVRVQ 85
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP +AL+N L+A F
Sbjct: 86 TDGTITPREALVNVCKQLVAAYGQLGREF 114
>gi|12718487|emb|CAC28816.1| related to DNA-directed RNA polymerase 13.3K chain [Neurospora
crassa]
Length = 133
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ T + N + F + KEDHTLGN++ L + PHVL AGYK HP + +RIQ
Sbjct: 17 KKIEEKVFTGMSNTSDFKILKEDHTLGNLLAEHLKQAPHVLMAGYKIAHPNVPELFIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLA 82
T TP +AL+ A L+A
Sbjct: 77 TDGSITPREALVGACKQLVA 96
>gi|164426902|ref|XP_961128.2| hypothetical protein NCU03782 [Neurospora crassa OR74A]
gi|157071522|gb|EAA31892.2| predicted protein [Neurospora crassa OR74A]
Length = 141
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ T + N + F + KEDHTLGN++ L + PHVL AGYK HP + +RIQ
Sbjct: 25 KKIEEKVFTGMSNTSDFKILKEDHTLGNLLAEHLKQAPHVLMAGYKIAHPNVPELFIRIQ 84
Query: 63 TTAESTPHDALMNAITDLLA 82
T TP +AL+ A L+A
Sbjct: 85 TDGSITPREALVGACKQLVA 104
>gi|367015282|ref|XP_003682140.1| hypothetical protein TDEL_0F01180 [Torulaspora delbrueckii]
gi|359749802|emb|CCE92929.1| hypothetical protein TDEL_0F01180 [Torulaspora delbrueckii]
Length = 129
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ + ++ A F + +EDHTLGN +R ++K+ V F GY PHP E+ LRIQT
Sbjct: 35 KLLPQASSEDGTCASFQIAEEDHTLGNALRYVIMKNKDVEFCGYSIPHPSENLLNLRIQT 94
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+T D L +TDL+ E+RF
Sbjct: 95 YGATTAVDVLQKGLTDLMDLCDAVEDRF 122
>gi|336472984|gb|EGO61144.1| hypothetical protein NEUTE1DRAFT_58240 [Neurospora tetrasperma FGSC
2508]
gi|350293767|gb|EGZ74852.1| RBP11-like subunits of RNA polymerase [Neurospora tetrasperma FGSC
2509]
Length = 141
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ T + N + F + KEDHTLGN++ L + PHVL AGYK HP + +RIQ
Sbjct: 25 KKIEEKVFTGMSNTSDFKILKEDHTLGNLLAEHLKQAPHVLMAGYKIAHPNVPELFIRIQ 84
Query: 63 TTAESTPHDALMNAITDLLA 82
T TP +AL+ A L+A
Sbjct: 85 TDGSITPREALVGACKQLVA 104
>gi|345560677|gb|EGX43802.1| hypothetical protein AOL_s00215g538 [Arthrobotrys oligospora ATCC
24927]
Length = 141
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%)
Query: 11 TKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPH 70
T + A F EDHTLGN +R ++K+P V F GY PHP E K +RIQT E T
Sbjct: 48 TDDDSCASFQFENEDHTLGNALRWIIMKNPQVEFCGYSIPHPSETKMNMRIQTYGEITAK 107
Query: 71 DALMNAITDLLAELSLFEERF 91
DAL+ + DL + ++F
Sbjct: 108 DALIKGLADLRDLCDVVTDKF 128
>gi|401412023|ref|XP_003885459.1| putative RNA polymerase II subunit RPB11 [Neospora caninum
Liverpool]
gi|325119878|emb|CBZ55431.1| putative RNA polymerase II subunit RPB11 [Neospora caninum
Liverpool]
Length = 208
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DT+ P F + ED+T+G ++RN LL D V F G +QPHPLE K LRIQT + S P
Sbjct: 31 DTRFPLCGTFVFHLEDYTIGYVLRNDLLNDARVKFVGLRQPHPLEPKIELRIQTVSNS-P 89
Query: 70 HDALMNAITDLLAELSLFEERF 91
++ ++ A LSL RF
Sbjct: 90 FTLVLESLRKRKAALSLLRARF 111
>gi|225709232|gb|ACO10462.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 102
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E+HTLGN +R+ +L++P VLF GY PHP E + +LRIQT + DAL +
Sbjct: 24 FIFKGENHTLGNALRSVILQNPDVLFCGYSIPHPAEDQMLLRIQTVSSVPTQDALRRGLE 83
Query: 79 DLLAELSLFEERF 91
DL S+ +F
Sbjct: 84 DLKDMCSVVSSKF 96
>gi|443895240|dbj|GAC72586.1| DNA-directed RNA polymerase, subunit L [Pseudozyma antarctica
T-34]
Length = 164
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F + +EDHTLGN +R ++KDP V F GY PHP E+K LR+Q ++ DAL
Sbjct: 32 SAVTFCLKEEDHTLGNSLRYMIMKDPRVEFCGYSNPHPSENKIHLRVQMYDRASALDALR 91
Query: 75 NAITDL 80
+AI +L
Sbjct: 92 DAIENL 97
>gi|303286291|ref|XP_003062435.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455952|gb|EEH53254.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 109
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
FT+ EDHT+GN IR L K+P V AGY PHP+E +R+QTT E T A+ +A+
Sbjct: 8 FTLKDEDHTMGNAIRYMLNKNPQVALAGYSVPHPMERSVNVRVQTTGEVTATAAMRDALL 67
Query: 79 DLLAELSLFEERF 91
D+++ + F
Sbjct: 68 DIISVCDHVHDTF 80
>gi|63054500|ref|NP_593118.2| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces pombe 972h-]
gi|2500635|sp|Q09177.1|RPAC2_SCHPO RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerases I
and III 14 kDa polypeptide
gi|5579416|gb|AAD45538.1|AF079779_1 nuclear RNA polymerases I and III common subunit Rpc19
[Schizosaccharomyces pombe]
gi|6692475|gb|AAF24657.1|AF116919_1 Rpc19 [Schizosaccharomyces pombe]
gi|1255203|gb|AAC49604.1| DNA-directed RNA polymerase I and III 16 kDa polypeptide
[Schizosaccharomyces pombe]
gi|3721850|dbj|BAA33719.1| RPA17 [Schizosaccharomyces pombe]
gi|4126811|dbj|BAA36760.1| RPA17 [Schizosaccharomyces pombe]
gi|159883909|emb|CAB50921.2| DNA-directed RNA polymerase I and III subunit Rpc19
[Schizosaccharomyces pombe]
Length = 125
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ F + KEDHTLGN +R ++K+P V F GY PHP E K RIQT +T D L
Sbjct: 33 TSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLR 92
Query: 75 NAITDLLAELSLFEERF 91
+ DL+ E+F
Sbjct: 93 KGLDDLIDLCDAVTEKF 109
>gi|302815190|ref|XP_002989277.1| hypothetical protein SELMODRAFT_160051 [Selaginella
moellendorffii]
gi|300143020|gb|EFJ09715.1| hypothetical protein SELMODRAFT_160051 [Selaginella
moellendorffii]
Length = 101
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 8 ELDTKV-PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE 66
EL + V P ++ F +N EDHT GN IR L DP V F GY PHP +++ +R+QTT E
Sbjct: 4 ELGSDVEPESSTFCINDEDHTFGNSIRYVLNGDPRVTFCGYSVPHPSDNRVNVRVQTTGE 63
Query: 67 STPHDALMNAITDLL 81
S +A+ DL+
Sbjct: 64 SAKS-VFKDALRDLV 77
>gi|168025386|ref|XP_001765215.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683534|gb|EDQ69943.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 118
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P A F+++ EDHTLGN +R L KDP V F GY PHP E + +R+QTT D L
Sbjct: 9 PRNATFSISDEDHTLGNSLRFVLNKDPRVAFCGYSVPHPSETRINVRVQTTGVPA-RDVL 67
Query: 74 MNAITDLLA 82
+A+ DL+A
Sbjct: 68 KDALNDLMA 76
>gi|302308422|ref|NP_985330.2| AFL220Cp [Ashbya gossypii ATCC 10895]
gi|299790625|gb|AAS53154.2| AFL220Cp [Ashbya gossypii ATCC 10895]
gi|374108558|gb|AEY97464.1| FAFL220Cp [Ashbya gossypii FDAG1]
Length = 135
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
A F + EDHTLGN +R ++K+P V F GY PHP E+ +RIQT + T DAL
Sbjct: 53 CASFQITDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENFLNIRIQTYGKVTAVDALHK 112
Query: 76 AITDLLAELSLFEERF 91
+ DL+ + E++F
Sbjct: 113 GLQDLMDMCDVVEDKF 128
>gi|363753556|ref|XP_003646994.1| hypothetical protein Ecym_5423 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890630|gb|AET40177.1| hypothetical protein Ecym_5423 [Eremothecium cymbalariae
DBVPG#7215]
Length = 127
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
+++ E ++ A F ++ EDHTLGN +R ++K+P V F GY PHP E LRIQT
Sbjct: 33 RLLPEAASEDGTCASFQISDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSETVLNLRIQT 92
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ T +AL + DL+ + E++F
Sbjct: 93 YGKMTAVEALHKGLKDLMDLCDVVEDKF 120
>gi|340504627|gb|EGR31054.1| DNA-directed polymerase II polypeptide J, putative
[Ichthyophthirius multifiliis]
Length = 125
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 12 KVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHD 71
K+ N+ +N EDHT+GN+IR LLK V FAGY+ PHPLE K +++QT ++T +
Sbjct: 35 KMKNSKTIIMNLEDHTIGNLIRMYLLKSKEVKFAGYRMPHPLETKVEIKVQTVKDNTC-E 93
Query: 72 ALMNAITDLLAELSLFEERF 91
L+N + L+ ++ + + F
Sbjct: 94 ILINTLDGLIKDIDIIQYDF 113
>gi|451854249|gb|EMD67542.1| hypothetical protein COCSADRAFT_188250 [Cochliobolus sativus
ND90Pr]
gi|452000164|gb|EMD92626.1| hypothetical protein COCHEDRAFT_1174793 [Cochliobolus
heterostrophus C5]
Length = 131
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
R I+ L AA F + EDHTLGN +R + K+P V F GY PHP E K LRIQ
Sbjct: 30 RDRIRVLSGSTETAASFQFDGEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQ 89
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + + L + DL+A + E++F
Sbjct: 90 TYDGVSVYTVLEKGLEDLMAMCDVVEKKF 118
>gi|365758721|gb|EHN00549.1| Rpc19p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 156
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F + +EDHTLGN +R ++K+P V F GY PHP E+ +RIQT E T DAL
Sbjct: 75 ASFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQTYGEITAVDALQKG 134
Query: 77 ITDLLAELSLFEERF 91
+ DL+ + E +F
Sbjct: 135 LKDLMDLCDVVEAKF 149
>gi|401839526|gb|EJT42714.1| RPC19-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 142
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F + +EDHTLGN +R ++K+P V F GY PHP E+ +RIQT E T DAL
Sbjct: 61 ASFQIVEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSENLLNIRIQTYGEITAVDALQKG 120
Query: 77 ITDLLAELSLFEERF 91
+ DL+ + E +F
Sbjct: 121 LKDLMDLCDVVEAKF 135
>gi|378730189|gb|EHY56648.1| DNA-directed RNA polymerase III subunit C19 [Exophiala dermatitidis
NIH/UT8656]
Length = 129
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE--STPHDAL 73
AA F + KEDHTLGN +R + K+P V F GY PHP E K LRIQT + +T DAL
Sbjct: 40 AASFQIEKEDHTLGNALRYFVTKNPDVEFCGYTIPHPSETKMHLRIQTWEDTKTTAVDAL 99
Query: 74 MNAITDLLAELSLFEERF 91
+ D++ + E+F
Sbjct: 100 RKGLEDMMEACDVVSEKF 117
>gi|71005330|ref|XP_757331.1| hypothetical protein UM01184.1 [Ustilago maydis 521]
gi|46096735|gb|EAK81968.1| hypothetical protein UM01184.1 [Ustilago maydis 521]
Length = 164
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F + +EDHTLGN +R ++KDP V F GY PHP E+K LRIQ ++ DAL
Sbjct: 32 SAVTFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDNASALDALR 91
Query: 75 NAITDL 80
+AI +L
Sbjct: 92 DAIENL 97
>gi|399949660|gb|AFP65318.1| ring-box protein 11 [Chroomonas mesostigmatica CCMP1168]
Length = 112
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
++KI D K N + +EDHTLGN+I +LK+ V+F+GYK+ HPLE+ + +I
Sbjct: 17 LKKINYYKDEKKLNCGYIKIEREDHTLGNIIHKNILKNKFVVFSGYKKTHPLEYFILFKI 76
Query: 62 QTTAESTPHDALMNAITDLLAELSLFE 88
T +P A N + D+ +LS E
Sbjct: 77 ITDGNISPLTAFENVLQDIYIQLSQLE 103
>gi|255075357|ref|XP_002501353.1| predicted protein [Micromonas sp. RCC299]
gi|226516617|gb|ACO62611.1| predicted protein [Micromonas sp. RCC299]
Length = 100
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
FT+ EDHT+GN +R L K+P V AGY PHP+E +R+QTT E T A+ +A+
Sbjct: 8 FTLKDEDHTMGNAVRYMLNKNPQVSLAGYSVPHPMEKSVNVRVQTTGEVTATAAMRDALL 67
Query: 79 DLLAELSLFEERF 91
D+++ + F
Sbjct: 68 DIISVCDHVHDTF 80
>gi|50293019|ref|XP_448942.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528255|emb|CAG61912.1| unnamed protein product [Candida glabrata]
Length = 137
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ + ++ A F + +EDHTLGN +R ++K+P V F GY PHP E LRIQT
Sbjct: 44 KLLPQATSEDGTCASFQIAQEDHTLGNALRYIIMKNPEVEFCGYSIPHPSEELLNLRIQT 103
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T DAL + DL+ +++F
Sbjct: 104 YGNITAVDALQKGLDDLIDLCDAVKDKF 131
>gi|343427064|emb|CBQ70592.1| related to Rpc19-DNA-directed RNA polymerases I and III, 18KD
subunit [Sporisorium reilianum SRZ2]
Length = 164
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F + +EDHTLGN +R ++KDP V F GY PHP E+K LRIQ ++ DAL
Sbjct: 32 SAVTFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDHASALDALR 91
Query: 75 NAITDL 80
+AI +L
Sbjct: 92 DAIENL 97
>gi|225709920|gb|ACO10806.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 102
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E+HTLGN +R+ +L++P VLF GY PHP E + LRIQT + DAL +
Sbjct: 24 FIFKGENHTLGNALRSVILQNPDVLFCGYSIPHPAEDQMPLRIQTVSSVPAQDALRRGLE 83
Query: 79 DLLAELSLFEERF 91
DL S+ +F
Sbjct: 84 DLKDMCSVVSSKF 96
>gi|328865481|gb|EGG13867.1| putative RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 103
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ A F + +EDHT+GN + L+K+P V F+GY PHP ++K LRIQT E++ DA++
Sbjct: 22 DCATFIMTEEDHTIGNSLHYVLMKNPKVDFSGYSIPHPSDNKLNLRIQTKGETSAQDAIL 81
Query: 75 NAITDL 80
+ D+
Sbjct: 82 TGLNDI 87
>gi|366995461|ref|XP_003677494.1| hypothetical protein NCAS_0G02550 [Naumovozyma castellii CBS 4309]
gi|342303363|emb|CCC71142.1| hypothetical protein NCAS_0G02550 [Naumovozyma castellii CBS 4309]
Length = 150
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI+ E ++ A F + EDHTLGN +R ++K+P+V F GY PHP E+ +RIQT
Sbjct: 56 KILPEGASEDGTCASFQIVDEDHTLGNALRYIIMKNPNVEFCGYSIPHPSENFLNVRIQT 115
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ T +A + DL+ + E++F
Sbjct: 116 YGDITAVEAFQKGLQDLMDLCDVVEDKF 143
>gi|254570701|ref|XP_002492460.1| RNA polymerase II subunit B12.5 [Komagataella pastoris GS115]
gi|238032258|emb|CAY70274.1| RNA polymerase II subunit B12.5 [Komagataella pastoris GS115]
gi|328353526|emb|CCA39924.1| DNA-directed RNA polymerase II subunit J [Komagataella pastoris CBS
7435]
Length = 118
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D++VPN I +EDHTL N++R +L P V F YK HPL F++R+QT + P
Sbjct: 24 DSRVPNCIIIKFEREDHTLANLLREELALYPDVTFVAYKVEHPLFANFVMRLQTEEGTRP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
AL A ++ +L + +F
Sbjct: 84 KQALERACASIINKLKTLDHKF 105
>gi|294654812|ref|XP_456893.2| DEHA2A12980p [Debaryomyces hansenii CBS767]
gi|199429167|emb|CAG84870.2| DEHA2A12980p [Debaryomyces hansenii CBS767]
Length = 129
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT + +AL
Sbjct: 40 AASFQIVDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQ 99
Query: 76 AITDLLAELSLFEERF 91
+ +L S EE+F
Sbjct: 100 GLDNLSELCSTIEEKF 115
>gi|320580545|gb|EFW94767.1| DNA-directed RNA polymerase subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 125
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 6 IKELDTKVPN--AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
IK L P+ AA F ++ EDHTLGN +R ++K+P V F GY PHP E K +RIQT
Sbjct: 24 IKLLPGSTPDGTAASFQISDEDHTLGNALRYMIMKNPEVEFCGYSIPHPAESKMNIRIQT 83
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ +AL + DL+ + E+ F
Sbjct: 84 YGGMSAVEALHKGLDDLVDLCTHVEDVF 111
>gi|258569481|ref|XP_002543544.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903814|gb|EEP78215.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 145
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 45/79 (56%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
R+ IK L AA F KEDHTLGN +R ++K+P V F GY PHP E + LRIQ
Sbjct: 44 RQRIKVLPGASETAASFQFEKEDHTLGNALRYVIMKNPGVEFCGYTMPHPSEERMNLRIQ 103
Query: 63 TTAESTPHDALMNAITDLL 81
T + + + L +DL+
Sbjct: 104 TYSPANVFEVLDKGFSDLM 122
>gi|254578786|ref|XP_002495379.1| ZYRO0B09878p [Zygosaccharomyces rouxii]
gi|238938269|emb|CAR26446.1| ZYRO0B09878p [Zygosaccharomyces rouxii]
Length = 130
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI+ + ++ A F + +EDHTLGN +R ++K+P V F GY PHP E+ +R+QT
Sbjct: 36 KILPQATSEDGTCASFQIAEEDHTLGNALRYMIMKNPDVEFCGYSIPHPSENLLNIRVQT 95
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T D L + DL+ E++F
Sbjct: 96 YGNVTAVDVLHKGLQDLMDLCDAVEDKF 123
>gi|380092277|emb|CCC10053.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 131
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ T + N + F + KEDHTL N++ L + PHVL AGYK HP + ++RIQ
Sbjct: 17 KKIEEKVFTGMSNTSDFKILKEDHTLANLLAEHLKQAPHVLMAGYKIAHPNVPEVMIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP +AL+ A L+A F
Sbjct: 77 TDGSITPREALVGACKQLVAMYGQLGREF 105
>gi|336274887|ref|XP_003352197.1| hypothetical protein SMAC_02632 [Sordaria macrospora k-hell]
Length = 140
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ T + N + F + KEDHTL N++ L + PHVL AGYK HP + ++RIQ
Sbjct: 26 KKIEEKVFTGMSNTSDFKILKEDHTLANLLAEHLKQAPHVLMAGYKIAHPNVPEVMIRIQ 85
Query: 63 TTAESTPHDALMNAITDLLA 82
T TP +AL+ A L+A
Sbjct: 86 TDGSITPREALVGACKQLVA 105
>gi|330932673|ref|XP_003303866.1| hypothetical protein PTT_16250 [Pyrenophora teres f. teres 0-1]
gi|311319853|gb|EFQ88038.1| hypothetical protein PTT_16250 [Pyrenophora teres f. teres 0-1]
Length = 126
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F + EDHTLGN +R + K+P V F GY PHP E K LRIQT ++ + L
Sbjct: 38 AASFQFDDEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQTYDGASVYTVLEK 97
Query: 76 AITDLLAELSLFEERF 91
+ DL+A + E++F
Sbjct: 98 GLEDLMAMCDVVEQKF 113
>gi|413937805|gb|AFW72356.1| hypothetical protein ZEAMMB73_054239 [Zea mays]
Length = 68
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 41/57 (71%)
Query: 35 QLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
QL +DP+VLFAGYK PHPL++K I+RI TT++S+P A AI DL EL ++ F
Sbjct: 2 QLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYTQAINDLDKELEYLKQAF 58
>gi|344304121|gb|EGW34370.1| hypothetical protein SPAPADRAFT_59793 [Spathaspora passalidarum
NRRL Y-27907]
Length = 127
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT + +AL
Sbjct: 38 AASFQIVDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQ 97
Query: 76 AITDLLAELSLFEERF 91
+ +L ++ EE+F
Sbjct: 98 GLDNLSELCTVIEEKF 113
>gi|315045149|ref|XP_003171950.1| DNA-directed RNA polymerase I and III subunit RPAC2 [Arthroderma
gypseum CBS 118893]
gi|311344293|gb|EFR03496.1| DNA-directed RNA polymerase I and III subunit RPAC2 [Arthroderma
gypseum CBS 118893]
Length = 157
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDA 72
V AA F EDHTLGN +R ++K+P V F GY PHP E K LRIQT + A
Sbjct: 65 VETAASFQFEAEDHTLGNALRYMIMKNPDVEFCGYTMPHPSEAKLNLRIQTYDSTDVFTA 124
Query: 73 LMNAITDLLAELSLFEERF 91
L + DL+ + E+F
Sbjct: 125 LEKGLDDLMDLCDVVTEKF 143
>gi|302660638|ref|XP_003021996.1| hypothetical protein TRV_03890 [Trichophyton verrucosum HKI 0517]
gi|291185920|gb|EFE41378.1| hypothetical protein TRV_03890 [Trichophyton verrucosum HKI 0517]
Length = 147
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
R+ I L V AA F EDHTLGN +R ++K+P V F GY PHP E K LRIQ
Sbjct: 45 RQRITILPGAVETAASFQFEDEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQ 104
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + L + DL+ + E+F
Sbjct: 105 TYDSTNVFTVLEKGLNDLMDLCDVVTEKF 133
>gi|388851779|emb|CCF54585.1| related to Rpc19-DNA-directed RNA polymerases I and III, 18KD
subunit [Ustilago hordei]
Length = 164
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F + +EDHTLGN +R ++KDP V F GY PHP E+K LRIQ +++ +AL
Sbjct: 32 SAVTFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDKASALEALR 91
Query: 75 NAITDL 80
+AI +L
Sbjct: 92 DAIENL 97
>gi|66802584|ref|XP_635164.1| hypothetical protein DDB_G0291362 [Dictyostelium discoideum AX4]
gi|74851461|sp|Q54ES6.1|RPC19_DICDI RecName: Full=DNA-directed RNA polymerases I and III subunit
rpc19
gi|60463480|gb|EAL61665.1| hypothetical protein DDB_G0291362 [Dictyostelium discoideum AX4]
Length = 116
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
E+ + P+ A F EDHTLGN + L+K+P V F+GY PHP +++ LRIQT +
Sbjct: 27 EIISDRPDCATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNI 86
Query: 68 TPHDALMNAITDL 80
T ++L+ +TD+
Sbjct: 87 TAQESLLQGLTDI 99
>gi|402077371|gb|EJT72720.1| DNA-directed RNA polymerase I and III polypeptide [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 157
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+K L P AA F KE HTLGN +R ++K+P V Y PHP EHK LRIQT
Sbjct: 57 VKMLPGSTPTAASFEFQKEGHTLGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYD 116
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+T +AL + DL + ++F
Sbjct: 117 GTTAIEALEKGLRDLQDLCDVVTDKF 142
>gi|406607619|emb|CCH41090.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 130
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 11 TKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPH 70
T+ AA F + EDHTLGN +R ++K+P V F GY PHP E K +RIQT + T
Sbjct: 36 TEDGTAASFQILDEDHTLGNALRYIIMKNPDVEFCGYSIPHPSETKLNIRIQTYGDMTAV 95
Query: 71 DALMNAITDLLAELSLFEERF 91
+AL + DL + E++F
Sbjct: 96 EALHKGLDDLSDMCTHIEDKF 116
>gi|189190328|ref|XP_001931503.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973109|gb|EDU40608.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 126
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
I+ L AA F + EDHTLGN +R + K+P V F GY PHP E K LRIQT
Sbjct: 28 IRVLAGASDTAASFQFDDEDHTLGNALRYIIHKNPDVEFCGYSIPHPSEAKMNLRIQTYD 87
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
++ + L + DL+A + E+++
Sbjct: 88 GASVYTVLEKGLEDLMAMCDIVEQKY 113
>gi|302843852|ref|XP_002953467.1| hypothetical protein VOLCADRAFT_63657 [Volvox carteri f.
nagariensis]
gi|300261226|gb|EFJ45440.1| hypothetical protein VOLCADRAFT_63657 [Volvox carteri f.
nagariensis]
Length = 104
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 40/65 (61%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F++ +EDHTL N +R L K+PHV F GY PHP E LR+QTT + T A+
Sbjct: 10 AATFSIEEEDHTLANSLRFFLNKNPHVSFCGYSMPHPSEELVNLRVQTTGQITAMQAVKA 69
Query: 76 AITDL 80
A D+
Sbjct: 70 ACEDM 74
>gi|448111317|ref|XP_004201814.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
gi|359464803|emb|CCE88508.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
Length = 133
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
A+ F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT T +AL
Sbjct: 44 ASSFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNITAVEALHQ 103
Query: 76 AITDLLAELSLFEERF 91
+ +L+ + E++F
Sbjct: 104 GLDNLVELCGVIEDKF 119
>gi|326484083|gb|EGE08093.1| DNA-directed RNA polymerase I and III polypeptide [Trichophyton
equinum CBS 127.97]
Length = 147
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDA 72
V AA F EDHTLGN +R ++K+P V F GY PHP E K LRIQT +
Sbjct: 55 VETAASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTV 114
Query: 73 LMNAITDLLAELSLFEERF 91
L ++DL+ + E+F
Sbjct: 115 LEKGLSDLMDLCDIVTEKF 133
>gi|452982354|gb|EME82113.1| hypothetical protein MYCFIDRAFT_77593 [Pseudocercospora fijiensis
CIRAD86]
Length = 133
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 41/76 (53%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F KEDHTLGN +R ++K+P V F GY PHP E LRIQT + D L
Sbjct: 40 AASFAFEKEDHTLGNALRYMIMKNPDVEFCGYSIPHPSEAVMNLRIQTWDGVSVFDVLRK 99
Query: 76 AITDLLAELSLFEERF 91
+ DL EE+F
Sbjct: 100 GLEDLADLCDAVEEKF 115
>gi|412986016|emb|CCO17216.1| predicted protein [Bathycoccus prasinos]
Length = 133
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A +++ EDHTLGN +R QL K+P V AGY PHP+E K +R+QT T A+ A
Sbjct: 36 ATYSLQNEDHTLGNCLRYQLNKNPGVALAGYSVPHPMERKVNVRVQTIQPLTADGAMREA 95
Query: 77 ITDLLAELSLFEERF 91
+ D+++ E F
Sbjct: 96 LLDVVSICEHVTETF 110
>gi|327295865|ref|XP_003232627.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
gi|326464938|gb|EGD90391.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
Length = 147
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDA 72
V AA F EDHTLGN +R ++K+P V F GY PHP E K LRIQT +
Sbjct: 55 VETAASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTV 114
Query: 73 LMNAITDLLAELSLFEERF 91
L ++DL+ + E+F
Sbjct: 115 LEKGLSDLMDLCDVVTEKF 133
>gi|296810458|ref|XP_002845567.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Arthroderma otae CBS 113480]
gi|238842955|gb|EEQ32617.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Arthroderma otae CBS 113480]
Length = 144
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDA 72
V AA F EDHTLGN +R ++K+P V F GY PHP E K LRIQT +
Sbjct: 52 VETAASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTMPHPSEAKMNLRIQTYDSTNVFTV 111
Query: 73 LMNAITDLLAELSLFEERF 91
L ++DL+ + E+F
Sbjct: 112 LEKGLSDLMDLCDVVTEKF 130
>gi|358054588|dbj|GAA99514.1| hypothetical protein E5Q_06215 [Mixia osmundae IAM 14324]
Length = 171
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
++A F + +EDHTLGN +R ++K+P V F GY QPHP E K LRIQ + ++AL
Sbjct: 26 SSATFCILEEDHTLGNALRYMIMKNPQVQFCGYSQPHPSEDKIHLRIQMYDGLSAYEALQ 85
Query: 75 NAITDL 80
+ + L
Sbjct: 86 SGLASL 91
>gi|159116857|ref|XP_001708649.1| RNA polymerase II subunit Rpb11 [Giardia lamblia ATCC 50803]
gi|21842229|gb|AAM77741.1|AF510649_1 RNA polymerase II subunit Rpb11 [Giardia intestinalis]
gi|157436762|gb|EDO80975.1| RNA polymerase II subunit Rpb11 [Giardia lamblia ATCC 50803]
Length = 131
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT--------TAE 66
NA F + +D+T+G+++R +LL P V FAG K PHPLE K ++R+QT T +
Sbjct: 30 NALEFQIPYQDYTIGHILRKELLSMPQVTFAGMKTPHPLESKIVIRLQTNPSGFLSDTIQ 89
Query: 67 STPHDALMNAITDLLAELSLFEERF 91
+TP + +A+T + + L ++ F
Sbjct: 90 ATPENCFQSALTKITESMELIKKTF 114
>gi|212546343|ref|XP_002153325.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
gi|210064845|gb|EEA18940.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
Length = 135
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 9 LDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAEST 68
L AA F +E HTLGN +R ++K+P V F GY PHP E K LRIQT ++T
Sbjct: 36 LSGATDTAASFQFKEEGHTLGNALRYVIMKNPKVEFCGYTIPHPSEAKMNLRIQTYDDTT 95
Query: 69 PHDALMNAITDLLAELSLFEERF 91
+AL + DL+ + ++F
Sbjct: 96 AIEALEKGLNDLMDLCDVVSDKF 118
>gi|126134273|ref|XP_001383661.1| RNA polymerase I and III subunit [Scheffersomyces stipitis CBS
6054]
gi|126095810|gb|ABN65632.1| RNA polymerase I and III subunit [Scheffersomyces stipitis CBS
6054]
Length = 119
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F + +EDHTLGN +R ++K+P V F GY PHP E+K +RIQT T +AL
Sbjct: 30 AASFQILEEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNITAVEALHQ 89
Query: 76 AITDLLAELSL-----FEER 90
+ D LAEL FEE+
Sbjct: 90 GL-DNLAELCTVIGDKFEEK 108
>gi|308163296|gb|EFO65646.1| RNA polymerase II subunit Rpb11 [Giardia lamblia P15]
Length = 131
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT--------TAE 66
NA F + +D+T+G+++R +LL P V FAG K PHPLE K ++R+QT T +
Sbjct: 30 NALEFQIPYQDYTIGHILRKELLSMPQVTFAGMKTPHPLESKIVIRLQTNSSGFLSDTIQ 89
Query: 67 STPHDALMNAITDLLAELSLFEERF 91
+TP + +A+T + + L ++ F
Sbjct: 90 ATPENCFQSALTKITESMELIKKTF 114
>gi|448509278|ref|XP_003866104.1| Rpc19 RNA polymerases I and III subunit AC19 [Candida orthopsilosis
Co 90-125]
gi|380350442|emb|CCG20664.1| Rpc19 RNA polymerases I and III subunit AC19 [Candida orthopsilosis
Co 90-125]
Length = 125
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
++A F + +EDHTLGN +R ++K+P V F GY PHP E+K +RIQT + +AL
Sbjct: 35 SSASFQILEEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISAVEALH 94
Query: 75 NAITDLLAELSLFEERF 91
+ +L + EE+F
Sbjct: 95 QGLDNLSELCGVVEEKF 111
>gi|303322216|ref|XP_003071101.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110800|gb|EER28956.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 145
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 43/76 (56%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F EDHTLGN +R ++K+P V F GY PHP E K LRIQT A + + L
Sbjct: 57 AASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMPHPSETKMNLRIQTYASTNVFEVLDK 116
Query: 76 AITDLLAELSLFEERF 91
++DL+ + E F
Sbjct: 117 GLSDLIDLCDVVTETF 132
>gi|116781945|gb|ABK22308.1| unknown [Picea sitchensis]
gi|224285983|gb|ACN40703.1| unknown [Picea sitchensis]
Length = 107
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P ++ F N EDHTLGN +R L DP V F GY PHP +++ +R+QTT + D L
Sbjct: 9 PRSSTFAFNDEDHTLGNSLRYVLNHDPRVEFCGYSIPHPSDNRVNIRVQTTGDPA-KDVL 67
Query: 74 MNAITDLLAELSLFEERF 91
+A+ DL+ + F
Sbjct: 68 KDALQDLMVVCQQVRQTF 85
>gi|320034951|gb|EFW16893.1| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
posadasii str. Silveira]
gi|392861857|gb|EAS37553.2| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
immitis RS]
Length = 145
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 43/76 (56%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F EDHTLGN +R ++K+P V F GY PHP E K LRIQT A + + L
Sbjct: 57 AASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMPHPSETKMNLRIQTYASTNVFEVLDK 116
Query: 76 AITDLLAELSLFEERF 91
++DL+ + E F
Sbjct: 117 GLSDLIDLCDVVTETF 132
>gi|253744474|gb|EET00682.1| RNA polymerase II subunit Rpb11 [Giardia intestinalis ATCC 50581]
Length = 131
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA--------E 66
NA F + +D+T+G+++R +LL P V FAG K PHPLE K ++R+QT A +
Sbjct: 30 NALEFQIPYQDYTIGHILRKELLAMPQVTFAGMKTPHPLESKIVIRLQTNASAFLSDTIQ 89
Query: 67 STPHDALMNAITDLLAELSLFEERF 91
+TP + +A+T + + L ++ F
Sbjct: 90 ATPENCFQSALTKVTESMELLKKTF 114
>gi|402222155|gb|EJU02222.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 148
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F + +EDHTLGN +R ++K+P V F GY PHP E+K LRIQ ++ DAL A
Sbjct: 33 ATFCIEEEDHTLGNALRWMIMKNPKVEFCGYSMPHPSEYKINLRIQMYDNASSLDALALA 92
Query: 77 ITDLLAELSLFEERF 91
+ L EE +
Sbjct: 93 LKQLDDLAGAIEEEY 107
>gi|260948950|ref|XP_002618772.1| hypothetical protein CLUG_02231 [Clavispora lusitaniae ATCC 42720]
gi|238848644|gb|EEQ38108.1| hypothetical protein CLUG_02231 [Clavispora lusitaniae ATCC 42720]
Length = 154
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F V EDHTLGN +R ++K+P V F GY PHP E+K +RIQT T +AL
Sbjct: 65 AASFQVLDEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNITALEALHQ 124
Query: 76 AITDLLAELSLFEERF 91
+ +L + EE F
Sbjct: 125 GLDNLSELCTHVEETF 140
>gi|255713672|ref|XP_002553118.1| KLTH0D09350p [Lachancea thermotolerans]
gi|238934498|emb|CAR22680.1| KLTH0D09350p [Lachancea thermotolerans CBS 6340]
Length = 146
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
A F +++EDHTLGN +R ++K+P V F GY PHP E LRIQT + T + L
Sbjct: 64 CASFQISEEDHTLGNALRYIIMKNPDVEFCGYSIPHPSETLLNLRIQTYGKFTAVEVLQK 123
Query: 76 AITDLLAELSLFEERF 91
+ DL+ E++F
Sbjct: 124 GLQDLMDLCDAVEDKF 139
>gi|308798741|ref|XP_003074150.1| RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa
polypeptide (ISS) [Ostreococcus tauri]
gi|116000322|emb|CAL50002.1| RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa
polypeptide (ISS) [Ostreococcus tauri]
Length = 230
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 35 QLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
+L K+P V+FAGYK PHP +H+ IL++ T A +TP AL +A+T+L AE+S ++F
Sbjct: 20 ELHKNPDVVFAGYKNPHPTDHRVILKVHTNANTTPVQALRDAVTNLRAEVSDIAQQF 76
>gi|354544993|emb|CCE41718.1| hypothetical protein CPAR2_802680 [Candida parapsilosis]
Length = 125
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
++A F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT + +AL
Sbjct: 35 SSASFQILDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISAVEALH 94
Query: 75 NAITDLLAELSLFEERF 91
+ +L + EE+F
Sbjct: 95 QGLDNLSELCGVVEEKF 111
>gi|407922733|gb|EKG15828.1| DNA-directed RNA polymerase Rpb11 13-16kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 126
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F EDHTLGN +R ++K+P V F GY PHP E K LRIQT + + +D L
Sbjct: 41 AASFEFENEDHTLGNALRYIIMKNPSVEFCGYSIPHPSEAKMNLRIQTYDDVSVYDVLEK 100
Query: 76 AITDLLAELS 85
+ D LAEL
Sbjct: 101 GLDD-LAELC 109
>gi|159117927|ref|XP_001709183.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia lamblia ATCC 50803]
gi|157437298|gb|EDO81509.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia lamblia ATCC 50803]
Length = 101
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F + EDHTLGN IR L +P V FAGY PHP E K LRIQ+ +S D L+ A
Sbjct: 6 ATFVIVNEDHTLGNCIRYCLTCNPAVSFAGYSVPHPAEPKLNLRIQSDTQSA-TDCLLQA 64
Query: 77 ITDLLAELSLFEERF 91
+ A S+ +R
Sbjct: 65 ADLMYAIASVLRQRL 79
>gi|326476483|gb|EGE00493.1| DNA-directed RNA polymerase I and III [Trichophyton tonsurans CBS
112818]
Length = 147
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDA 72
V AA F EDHTLGN +R ++K+P V F GY PHP E K LRIQT +
Sbjct: 55 VETAASFQFEGEDHTLGNALRYVIMKNPDVEFCGYTIPHPSEAKMNLRIQTYDSTKVFTV 114
Query: 73 LMNAITDLLAELSLFEERF 91
L ++DL+ + E+F
Sbjct: 115 LEKGLSDLMDLCDIVTEKF 133
>gi|448097294|ref|XP_004198635.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
gi|359380057|emb|CCE82298.1| Piso0_002018 [Millerozyma farinosa CBS 7064]
Length = 133
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
A+ F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT T +AL
Sbjct: 44 ASSFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKMNVRIQTYGNITAVEALHQ 103
Query: 76 AITDLLAELSLFEERF 91
+ +L+ + E+ F
Sbjct: 104 GLDNLVELCGVIEDNF 119
>gi|146414666|ref|XP_001483303.1| hypothetical protein PGUG_04032 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT + +AL
Sbjct: 34 AATFQIIDEDHTLGNTLRYVIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISSVEALHQ 93
Query: 76 AITDLLAELSLFEERF 91
+ +L ++ E +F
Sbjct: 94 GLDNLSELCTVIETKF 109
>gi|190347624|gb|EDK39934.2| hypothetical protein PGUG_04032 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT + +AL
Sbjct: 34 AATFQIIDEDHTLGNTLRYVIMKNPEVEFCGYSIPHPSENKMNIRIQTYGNISSVEALHQ 93
Query: 76 AITDLLAELSLFEERF 91
+ +L ++ E +F
Sbjct: 94 GLDNLSELCTVIETKF 109
>gi|169612495|ref|XP_001799665.1| hypothetical protein SNOG_09370 [Phaeosphaeria nodorum SN15]
gi|160702522|gb|EAT83562.2| hypothetical protein SNOG_09370 [Phaeosphaeria nodorum SN15]
Length = 139
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKD--------PHVLFAGYKQPHPLE 54
R I+ L AA F ++ EDHTLGN +R + K+ P V F GY PHP E
Sbjct: 30 RDRIRVLSGATETAASFQIDGEDHTLGNALRYIIHKNEVANTIYSPDVEFCGYSIPHPSE 89
Query: 55 HKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
K LRIQT + + L + DL+A + EE+F
Sbjct: 90 AKMNLRIQTYDGVSVYSVLEKGLEDLMAMCDVVEEKF 126
>gi|302817582|ref|XP_002990466.1| hypothetical protein SELMODRAFT_49918 [Selaginella
moellendorffii]
gi|300141634|gb|EFJ08343.1| hypothetical protein SELMODRAFT_49918 [Selaginella
moellendorffii]
Length = 92
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
++ F N EDHTLGN +R L KDP V+F GY PHP E+K +R+QTT + + +
Sbjct: 3 SSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQTTG-APAKEVFKD 61
Query: 76 AITDLLA 82
A+ D++A
Sbjct: 62 ALLDMVA 68
>gi|367038609|ref|XP_003649685.1| hypothetical protein THITE_2108460 [Thielavia terrestris NRRL
8126]
gi|346996946|gb|AEO63349.1| hypothetical protein THITE_2108460 [Thielavia terrestris NRRL
8126]
Length = 138
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ L PHV+ AGYK HP + ++R+Q
Sbjct: 17 KKITEKVVSGMSNTSDFILLKEDHTLGNLLSEHLKMAPHVMMAGYKIDHPNVPEVLIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLA 82
T TP +AL+ L+A
Sbjct: 77 TDGSITPREALVRVCKQLVA 96
>gi|426356122|ref|XP_004045440.1| PREDICTED: uncharacterized protein LOC101147128 [Gorilla gorilla
gorilla]
Length = 403
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 48 KQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
K PHPLEHK I+R+QTT + +P +A NAIT+L++ELSL EE F
Sbjct: 306 KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITNLISELSLLEECF 349
>gi|302804069|ref|XP_002983787.1| hypothetical protein SELMODRAFT_49652 [Selaginella
moellendorffii]
gi|300148624|gb|EFJ15283.1| hypothetical protein SELMODRAFT_49652 [Selaginella
moellendorffii]
Length = 92
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
++ F N EDHTLGN +R L KDP V+F GY PHP E+K +R+QTT + + +
Sbjct: 3 SSTFCFNGEDHTLGNSLRFLLNKDPRVVFCGYSVPHPSENKVNVRVQTTG-APGKEVFKD 61
Query: 76 AITDLLA 82
A+ D++A
Sbjct: 62 ALLDMVA 68
>gi|241958198|ref|XP_002421818.1| DNA-directed RNA polymerase subunit, common to RNA polymerases I
and III, putative [Candida dubliniensis CD36]
gi|223645163|emb|CAX39762.1| DNA-directed RNA polymerase subunit, common to RNA polymerases I
and III, putative [Candida dubliniensis CD36]
Length = 130
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+A F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT + +AL
Sbjct: 41 SASFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQ 100
Query: 76 AITDLLAELSLFEERF 91
+ +L S E++F
Sbjct: 101 GLDNLSELCSAIEDKF 116
>gi|328863713|gb|EGG12812.1| hypothetical protein MELLADRAFT_70512 [Melampsora larici-populina
98AG31]
Length = 143
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 38/65 (58%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F + EDHTLGN +R ++K+P V F GY PHP E K LRIQ + ALM
Sbjct: 28 AATFCLKDEDHTLGNSLRYIIMKNPDVEFCGYSLPHPSEPKLNLRIQMYDNKSAVQALMK 87
Query: 76 AITDL 80
+ DL
Sbjct: 88 GLADL 92
>gi|209731212|gb|ACI66475.1| DNA-directed RNA polymerase II subunit RPB11 [Salmo salar]
Length = 128
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F +NKEDHTLGN++ L P+V AGYK HP + +R+Q
Sbjct: 17 KKIEEKVYSGMSNTSDFVLNKEDHTLGNLLAEHLKAHPNVYMAGYKLGHPNVPQLFIRLQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP D + L+ +L + F
Sbjct: 77 TDGTKTPRDVFTSVCEKLINQLESLHQEF 105
>gi|429860805|gb|ELA35525.1| amino acid permease [Colletotrichum gloeosporioides Nara gc5]
Length = 855
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 50/89 (56%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ L + +VL AGYK HP + +R+Q
Sbjct: 747 KKIEEKVFSGMSNTSDFILKKEDHTLGNLLSEHLKQHKNVLMAGYKISHPNVPELFIRVQ 806
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T P +AL+ I L+ + S F
Sbjct: 807 TDGSIPPKEALVQVIKRLMQDFSHLSREF 835
>gi|254572994|ref|XP_002493606.1| hypothetical protein [Komagataella pastoris GS115]
gi|238033405|emb|CAY71427.1| hypothetical protein PAS_chr4_0925 [Komagataella pastoris GS115]
gi|328354564|emb|CCA40961.1| DNA-directed RNA polymerase III subunit C19 [Komagataella pastoris
CBS 7435]
Length = 136
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F + EDHTLGN +R ++K+P V + GY PHP E K +RIQT T +AL
Sbjct: 47 AASFQILDEDHTLGNSLRYIIIKNPEVEYCGYSIPHPSEAKLNIRIQTYGGMTAVEALRK 106
Query: 76 AITDLLAELSLFEERF 91
+ DL+ E++F
Sbjct: 107 GLDDLVDICDHVEKKF 122
>gi|225678511|gb|EEH16795.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 201
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 46/91 (50%)
Query: 1 MIRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILR 60
++ +I L A F ++EDHTLGN +R ++K+P V F GY PHP E K LR
Sbjct: 98 VLSTVILCLPGATETAVSFQFDREDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLR 157
Query: 61 IQTTAESTPHDALMNAITDLLAELSLFEERF 91
IQT +T L DL+ + E F
Sbjct: 158 IQTYDTTTAIAVLEKGFDDLMELCDVVTETF 188
>gi|296417394|ref|XP_002838343.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634271|emb|CAZ82534.1| unnamed protein product [Tuber melanosporum]
Length = 105
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE----STPH 70
+A F + EDHTLGN +R ++K+P V F GY PHP E K +RIQ E + P+
Sbjct: 8 GSASFEILGEDHTLGNALRYIIMKNPEVEFCGYSIPHPSEEKMNIRIQIYPEYWEHTKPY 67
Query: 71 DALMNAITDL 80
DALM + DL
Sbjct: 68 DALMKGLDDL 77
>gi|50554135|ref|XP_504476.1| YALI0E27676p [Yarrowia lipolytica]
gi|49650345|emb|CAG80079.1| YALI0E27676p [Yarrowia lipolytica CLIB122]
Length = 140
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
A F +EDHT+GN ++ ++K+P V F GY PHP E K +RIQT + T +AL
Sbjct: 54 ACSFQFTEEDHTIGNALQYIIMKNPEVEFCGYSIPHPSEAKLNIRIQTYGDITAIEALQK 113
Query: 76 AITDLLAELSLFEERF 91
+ DL+ + + +F
Sbjct: 114 GLDDLIQACDVVKNKF 129
>gi|242823716|ref|XP_002488115.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces stipitatus ATCC 10500]
gi|218713036|gb|EED12461.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces stipitatus ATCC 10500]
Length = 136
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 9 LDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAEST 68
L AA F +E HTLGN +R ++K+P V F GY PHP E K LRIQT +T
Sbjct: 37 LSGATETAASFQFKEEGHTLGNALRYVIMKNPAVEFCGYTIPHPSEAKMNLRIQTYENTT 96
Query: 69 PHDALMNAITDLLAELSLFEERF 91
+AL + DL+ + ++F
Sbjct: 97 AIEALEKGLDDLMDLCDVVTDKF 119
>gi|356577658|ref|XP_003556941.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB11-like [Glycine max]
Length = 75
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
+K E+DTK+ NA+ FT+ E+HT+ N++R QL +DP+VL YK PH L++K I+R+
Sbjct: 17 KKFSYEMDTKIINASSFTIEXEEHTINNILRMQLHRDPNVLIVRYKLPHALQYKIIVRL 75
>gi|240276866|gb|EER40377.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H143]
Length = 137
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 41/76 (53%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F +KEDHTLGN +R ++K+P V F GY PHP E K LRIQT + L
Sbjct: 49 AASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFSVLEK 108
Query: 76 AITDLLAELSLFEERF 91
+ DL+ E F
Sbjct: 109 GLDDLMNLCDTVTETF 124
>gi|154272529|ref|XP_001537117.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409104|gb|EDN04560.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 137
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 41/76 (53%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F +KEDHTLGN +R ++K+P V F GY PHP E K LRIQT + L
Sbjct: 49 AASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFSVLEK 108
Query: 76 AITDLLAELSLFEERF 91
+ DL+ E F
Sbjct: 109 GLDDLMNLCDTVTETF 124
>gi|321252347|ref|XP_003192374.1| DNA-directed RNA polymerase [Cryptococcus gattii WM276]
gi|317458842|gb|ADV20587.1| DNA-directed RNA polymerase, putative [Cryptococcus gattii WM276]
Length = 155
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F + +EDHTLGN +R ++KDP V F GY PHP E K LRIQ + D L
Sbjct: 38 SACTFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQSAVDCLR 97
Query: 75 NAITDL 80
A+++L
Sbjct: 98 RALSNL 103
>gi|261190999|ref|XP_002621908.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239590952|gb|EEQ73533.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239613144|gb|EEQ90131.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
gi|327354788|gb|EGE83645.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 142
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 41/76 (53%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F +KEDHTLGN +R ++K+P V F GY PHP E K LRIQT + + L
Sbjct: 54 AASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTYDTTNVFEVLEK 113
Query: 76 AITDLLAELSLFEERF 91
DL+ E F
Sbjct: 114 GFDDLMDLCDTVTETF 129
>gi|398393690|ref|XP_003850304.1| hypothetical protein MYCGRDRAFT_45952, partial [Zymoseptoria
tritici IPO323]
gi|339470182|gb|EGP85280.1| hypothetical protein MYCGRDRAFT_45952 [Zymoseptoria tritici
IPO323]
Length = 101
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 40/76 (52%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F KEDHTLGN +R ++K+P V F GY PHP E LRIQT + L
Sbjct: 8 AASFAFEKEDHTLGNALRYMIMKNPDVEFCGYSIPHPSEAVMNLRIQTWDGVNVMEVLRK 67
Query: 76 AITDLLAELSLFEERF 91
+ DL EE+F
Sbjct: 68 GLDDLSDMCDAVEEKF 83
>gi|405118365|gb|AFR93139.1| DNA-directed RNA polymerase [Cryptococcus neoformans var. grubii
H99]
Length = 155
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F + +EDHTLGN +R ++KDP V F GY PHP E K LRIQ + D L
Sbjct: 38 SACTFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQSAVDCLR 97
Query: 75 NAITDL 80
A+++L
Sbjct: 98 RALSNL 103
>gi|325095094|gb|EGC48404.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H88]
Length = 137
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 41/76 (53%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F +KEDHTLGN +R ++K+P V F GY PHP E K LRIQT + L
Sbjct: 49 AASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFSVLEK 108
Query: 76 AITDLLAELSLFEERF 91
+ DL+ E F
Sbjct: 109 GLDDLMNLCDTVTETF 124
>gi|84996827|ref|XP_953135.1| RNA polymerases I and III subunit (RPC19 homologue) [Theileria
annulata strain Ankara]
gi|65304131|emb|CAI76510.1| RNA polymerases I and III subunit (RPC19 homologue), putative
[Theileria annulata]
Length = 90
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+ ++D K PN F + EDHTLGN +R L++ V+FAGY PHP+E + +RIQTT
Sbjct: 1 MDKVDHKSPNIT-FCIENEDHTLGNTLRALLVERDDVVFAGYSVPHPMEPEMNIRIQTTG 59
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+ + ++ + D++ + E+F
Sbjct: 60 QPAV-EVFLDCLDDMVKICDILREKF 84
>gi|225554760|gb|EEH03055.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Ajellomyces capsulatus G186AR]
Length = 137
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 41/76 (53%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F +KEDHTLGN +R ++K+P V F GY PHP E K LRIQT + L
Sbjct: 49 AASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFSVLEK 108
Query: 76 AITDLLAELSLFEERF 91
+ DL+ E F
Sbjct: 109 GLDDLMNLCDTVTETF 124
>gi|58262798|ref|XP_568809.1| DNA-directed RNA polymerase [Cryptococcus neoformans var.
neoformans JEC21]
gi|134108506|ref|XP_777204.1| hypothetical protein CNBB4340 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259889|gb|EAL22557.1| hypothetical protein CNBB4340 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223459|gb|AAW41502.1| DNA-directed RNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 155
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 40/66 (60%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F + +EDHTLGN +R ++KDP V F GY PHP E K LRIQ + D L
Sbjct: 38 SACTFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQSAVDCLR 97
Query: 75 NAITDL 80
A+++L
Sbjct: 98 RALSNL 103
>gi|344232063|gb|EGV63942.1| RNA polymerase I and III subunit [Candida tenuis ATCC 10573]
Length = 123
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT T +AL
Sbjct: 43 AASFQIVDEDHTLGNSLRYVIMKNPEVEFVGYSIPHPSENKLNIRIQTYGSITAVEALHL 102
Query: 76 AITDLLAELSLFEERF 91
+ +L + E +F
Sbjct: 103 GLENLSQLCGVIETKF 118
>gi|124512838|ref|XP_001349775.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
gi|74843039|sp|Q8IER7.1|RPB11_PLAF7 RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|23615192|emb|CAD52182.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
Length = 126
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ IF + EDHT+GN+I+ QL +DP VLFA Y+QPHPL++ + I+ + L
Sbjct: 34 DCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAYRQPHPLQNAIEITIKPKGYAGVK-LLS 92
Query: 75 NAITDLLAELSLFEERF 91
+ + ++L++++ +E F
Sbjct: 93 DNVNNILSQVATLKENF 109
>gi|242085108|ref|XP_002442979.1| hypothetical protein SORBIDRAFT_08g005640 [Sorghum bicolor]
gi|241943672|gb|EES16817.1| hypothetical protein SORBIDRAFT_08g005640 [Sorghum bicolor]
Length = 108
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+++ F++ +EDHTL N +R L +DP V F GY PHP E+K +R+QTT + D L
Sbjct: 10 SSSTFSIMEEDHTLANSVRFVLNQDPRVAFCGYSIPHPAENKVNIRVQTTGDPA-KDVLK 68
Query: 75 NAITDLL 81
+A+ DL+
Sbjct: 69 DALQDLM 75
>gi|238879719|gb|EEQ43357.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
albicans WO-1]
Length = 133
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+A F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT + +AL
Sbjct: 44 SASFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQ 103
Query: 76 AITDLLAELSLFEERF 91
+ +L E++F
Sbjct: 104 GLDNLSELCGAIEDKF 119
>gi|68490974|ref|XP_710709.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|68491001|ref|XP_710695.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|46431930|gb|EAK91447.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
gi|46431945|gb|EAK91461.1| potential RNA Polymerase I and III shared subunit Rpc19 [Candida
albicans SC5314]
Length = 131
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+A F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT + +AL
Sbjct: 42 SASFQIIDEDHTLGNALRYIIMKNPEVEFCGYSIPHPSENKLNIRIQTYGNISAVEALHQ 101
Query: 76 AITDLLAELSLFEERF 91
+ +L E++F
Sbjct: 102 GLDNLSELCGAIEDKF 117
>gi|347829199|emb|CCD44896.1| hypothetical protein [Botryotinia fuckeliana]
Length = 148
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F KEDHTLGN +R ++K+P V F GY PHP E +RIQT +++ DAL
Sbjct: 61 AASFEFKKEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEELMNIRIQTY-DNSAEDALRK 119
Query: 76 AITDLLAELSLFEERF 91
+ DL+ + ++F
Sbjct: 120 GLDDLIDLCDVVADKF 135
>gi|221060743|ref|XP_002261941.1| DNA-directed RNA polymerase 2 [Plasmodium knowlesi strain H]
gi|193811091|emb|CAQ41819.1| DNA-directed RNA polymerase 2, putative [Plasmodium knowlesi strain
H]
Length = 126
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+ K + IFT+ EDHT+GN+I+ L +DP V FA Y+QPHPL++ + I+
Sbjct: 23 KKVSCEISEK-GDCNIFTIKLEDHTIGNLIKQALCQDPQVTFAAYRQPHPLQNTIEITIK 81
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
+ L + + LL+++S E F
Sbjct: 82 PKGYAGVK-LLSDNVNSLLSDVSQLRETF 109
>gi|71028926|ref|XP_764106.1| RNA polymerase small subunit [Theileria parva strain Muguga]
gi|68351060|gb|EAN31823.1| RNA polymerase small subunit, putative [Theileria parva]
Length = 92
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+ ++D K PN F + EDHTLGN +R L++ V+FAGY PHP+E + +RIQTT
Sbjct: 1 MDKVDHKSPNIT-FCIENEDHTLGNTLRALLVERDDVVFAGYSVPHPMEPEMNVRIQTTG 59
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+ + ++ + D++ + E+F
Sbjct: 60 QPAV-EVFLDCLDDMVKICDILTEKF 84
>gi|156102573|ref|XP_001616979.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Plasmodium
vivax Sal-1]
gi|148805853|gb|EDL47252.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide, putative
[Plasmodium vivax]
Length = 126
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+ K + IFT+ EDHT+GN+I+ L +DP V FA Y+QPHPL++ + I+
Sbjct: 23 KKVSCEISEK-GDCNIFTIKLEDHTIGNLIKQALCQDPKVTFAAYRQPHPLQNTIEITIK 81
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
+ L + + LL+++S E F
Sbjct: 82 PKGYAGVK-LLSDNVNSLLSDVSQLRETF 109
>gi|357160551|ref|XP_003578801.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Brachypodium distachyon]
Length = 108
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
A+ F++ +EDHTL N +R L +DP V F GY PHP ++K +R+QTT + D +++
Sbjct: 11 ASSFSIMEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTGDPA-KDVMVD 69
Query: 76 AITDLL 81
A+ DL+
Sbjct: 70 ALQDLM 75
>gi|453083599|gb|EMF11644.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Mycosphaerella populorum SO2202]
Length = 134
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F KEDHTLGN++R + K+P V F GY PHP E LRIQT + + L
Sbjct: 40 AASFAFEKEDHTLGNVLRYLISKNPDVEFVGYSIPHPSEAFMNLRIQTWDNVSVFEVLRK 99
Query: 76 AITDLLAELSLFEERF 91
+ DL + EE+F
Sbjct: 100 GLQDLEDMCDVIEEKF 115
>gi|389585987|dbj|GAB68716.1| DNA-directed RNA polymerase II 13.3 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 126
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ E+ K + IFT+ EDHT+GN+I+ L +DP V FA Y+QPHPL++ + I+
Sbjct: 23 KKVSCEISEK-GDCNIFTIKLEDHTIGNLIKQALCQDPKVTFAAYRQPHPLQNTIEITIK 81
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
+ L + + LL+++S E F
Sbjct: 82 PKGYAGVK-LLSDNVNSLLSDVSQLRETF 109
>gi|198419255|ref|XP_002121265.1| PREDICTED: similar to LOC494863 protein [Ciona intestinalis]
Length = 109
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
IK+ D++ F ++ EDHTLGN +R L+K+P + F GY PHP E+K LRIQT
Sbjct: 15 IKDGDSET--CCTFIIHNEDHTLGNALRYILMKNPDIEFCGYSIPHPAENKMNLRIQTRG 72
Query: 66 ESTPHDALMNAITDL 80
S +AL + DL
Sbjct: 73 ISAT-EALKKGLKDL 86
>gi|401883042|gb|EJT47278.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 184
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F + +EDHTLGN +R ++KDP V + GY PHP E K LR+Q + D L
Sbjct: 71 SACTFCLWEEDHTLGNALRWMIMKDPDVEYCGYSAPHPSEPKIHLRVQMYEGLSAVDCLR 130
Query: 75 NAITDL 80
A+++L
Sbjct: 131 RALSNL 136
>gi|406700270|gb|EKD03443.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 162
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F + +EDHTLGN +R ++KDP V + GY PHP E K LR+Q + D L
Sbjct: 49 SACTFCLWEEDHTLGNALRWMIMKDPDVEYCGYSAPHPSEPKIHLRVQMYEGLSAVDCLR 108
Query: 75 NAITDL 80
A+++L
Sbjct: 109 RALSNL 114
>gi|384500104|gb|EIE90595.1| hypothetical protein RO3G_15306 [Rhizopus delemar RA 99-880]
Length = 156
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P A F EDHTLGN +R+ + K+ V F GY PHP E K +RIQTT ++T DAL
Sbjct: 63 PTALTFCFKNEDHTLGNSLRHVINKNRDVDFCGYSIPHPSEAKMNIRIQTTDKTTSIDAL 122
Query: 74 MNAITDL 80
+ +L
Sbjct: 123 KTGLQNL 129
>gi|330799276|ref|XP_003287672.1| hypothetical protein DICPUDRAFT_32831 [Dictyostelium purpureum]
gi|325082292|gb|EGC35778.1| hypothetical protein DICPUDRAFT_32831 [Dictyostelium purpureum]
Length = 116
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
E+ + P+ A F EDHTLGN + L+K+P V F+GY PHP +++ LRIQT
Sbjct: 27 EIISDRPDCATFIFTDEDHTLGNSLHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKGHI 86
Query: 68 TPHDALMNAITDL 80
+ ++L+ + D+
Sbjct: 87 SAQESLLQGLNDI 99
>gi|401406776|ref|XP_003882837.1| DNA-directed RNA polymerase I 16 kDa polypeptide,related
[Neospora caninum Liverpool]
gi|325117253|emb|CBZ52805.1| DNA-directed RNA polymerase I 16 kDa polypeptide,related
[Neospora caninum Liverpool]
Length = 129
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 18 IFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
FT+ EDHTLGN IR+ L++ P V FAGY PHP + + +R+QTT ES
Sbjct: 38 TFTLTGEDHTLGNAIRSILVRKPGVEFAGYSVPHPTQPEMNIRLQTTGES 87
>gi|15897236|ref|NP_341841.1| DNA-directed RNA polymerase subunit L (rpoL) [Sulfolobus
solfataricus P2]
gi|284174481|ref|ZP_06388450.1| DNA-directed RNA polymerase, subunit L (rpoL) [Sulfolobus
solfataricus 98/2]
gi|384433747|ref|YP_005643105.1| RNA polymerase dimerization [Sulfolobus solfataricus 98/2]
gi|21263959|sp|Q980K0.1|RPOL_SULSO RecName: Full=DNA-directed RNA polymerase subunit L
gi|167013265|pdb|2PA8|L Chain L, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
gi|167744889|pdb|2PMZ|L Chain L, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744900|pdb|2PMZ|X Chain X, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782152|pdb|3HKZ|L Chain L, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
gi|239782165|pdb|3HKZ|V Chain V, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
gi|13813435|gb|AAK40631.1| DNA-directed RNA polymerase, subunit L (rpoL) [Sulfolobus
solfataricus P2]
gi|261601901|gb|ACX91504.1| RNA polymerase dimerization [Sulfolobus solfataricus 98/2]
Length = 92
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDL 80
+ EDHTLGN+I L + V FA Y QPHPL K I++I T TP DAL+ AI ++
Sbjct: 17 IEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENI 76
>gi|302911227|ref|XP_003050446.1| hypothetical protein NECHADRAFT_84788 [Nectria haematococca mpVI
77-13-4]
gi|256731383|gb|EEU44733.1| hypothetical protein NECHADRAFT_84788 [Nectria haematococca mpVI
77-13-4]
Length = 136
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ L P+V AGYK HP + +R+Q
Sbjct: 26 KKIEEKVFSGMSNTSDFVLKKEDHTLGNLLSEHLKMHPNVYMAGYKIAHPNVPELFIRVQ 85
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP D + L+ +L + + F
Sbjct: 86 TDGTITPRDVFTSVCEKLINQLEMLHQEF 114
>gi|237831979|ref|XP_002365287.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Toxoplasma gondii ME49]
gi|211962951|gb|EEA98146.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Toxoplasma gondii ME49]
gi|221486858|gb|EEE25104.1| DNA-directed RNA polymerase, putative [Toxoplasma gondii GT1]
gi|221506554|gb|EEE32171.1| DNA-directed RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 129
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
FT+ EDHTLGN IR+ L++ P V FAGY PHP + + +R+QTT ES
Sbjct: 39 FTLTGEDHTLGNTIRSILVRKPGVEFAGYSVPHPTQPEMNIRLQTTGES 87
>gi|189205499|ref|XP_001939084.1| RNA polymerase II subunit [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975177|gb|EDU41803.1| RNA polymerase II subunit [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 183
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQ 49
+K+ ++ +T+VPN A+FT NKEDHTLGN++ +L K+P +LFA YK+
Sbjct: 92 QKVEEKAETRVPNTAVFTFNKEDHTLGNLLSARLQKNPAILFAAYKE 138
>gi|380474439|emb|CCF45777.1| hypothetical protein CH063_03693 [Colletotrichum higginsianum]
Length = 125
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ L +VL AGYK HP + +R+Q
Sbjct: 17 KKIEEKVFSGMSNTSDFVIKKEDHTLGNLLSEHLKAHKNVLMAGYKIAHPNVPEMFIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T T +AL+ I L+ +LS F
Sbjct: 77 TDGSITAKEALVQVIKKLMQDLSHLSREF 105
>gi|400596490|gb|EJP64261.1| DNA-directed RNA polymerase 13.3K chain [Beauveria bassiana ARSEF
2860]
Length = 128
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ L P+VL AGYK HP + +R+Q
Sbjct: 17 KKIEEKVYSGMSNTSDFLLKKEDHTLGNLLSEHLKLHPNVLMAGYKLGHPNVPELFIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T T D + L+ +L + ++F
Sbjct: 77 TDGTVTSRDVFTSVCEKLINQLEMLHQKF 105
>gi|357157134|ref|XP_003577696.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Brachypodium distachyon]
Length = 107
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A+ F++ +EDHTL N +R L +DP V F GY PHP ++K +R+QTT + D +
Sbjct: 10 SASSFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTGDPA-KDVMK 68
Query: 75 NAITDLL 81
+A+ DL+
Sbjct: 69 DALQDLM 75
>gi|331230585|ref|XP_003327957.1| DNA-directed RNA polymerase III subunit C19 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309306947|gb|EFP83538.1| DNA-directed RNA polymerase III subunit C19 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 154
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F++ EDHTLGN +R ++K+P V F GY PHP E K LRIQ + AL
Sbjct: 34 DAMTFSLKDEDHTLGNSLRYIIMKNPEVEFCGYSLPHPSEPKLHLRIQMYDNKSAAGALA 93
Query: 75 NAITDLLAELSLFEERF 91
+ DL + + ER+
Sbjct: 94 KGLDDLEQLVLVLAERY 110
>gi|308162692|gb|EFO65073.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia lamblia P15]
Length = 100
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F + EDHTLGN IR L +P V FAGY PHP E K LRIQ+ +S D L+ A
Sbjct: 6 ATFVIVNEDHTLGNCIRYCLTCNPAVSFAGYSVPHPAEPKLNLRIQSDTQSAT-DCLLQA 64
Query: 77 ITDLLAELS 85
DL+ ++
Sbjct: 65 -ADLMYNIA 72
>gi|320591999|gb|EFX04438.1| DNA-directed RNA polymerase 2 subunit [Grosmannia clavigera kw1407]
Length = 168
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI + T + N + F + KEDHTLGN++ L P +L AGYK HP + +LR+Q
Sbjct: 57 KKITETPFTGMANTSDFLMLKEDHTLGNLLAEHLKMHPKILMAGYKVAHPNVAEVLLRVQ 116
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP + L+ L+A L F
Sbjct: 117 TDGTVTPKEVLVEVCKQLVATLGHLSREF 145
>gi|392595387|gb|EIW84710.1| RBP11-like subunits of RNA polymerase [Coniophora puteana
RWD-64-598 SS2]
Length = 114
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+AA + + E HT+GN +R L+K+P V F GY PHP E+ +RIQ E + DAL+
Sbjct: 22 SAATYQIFDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENHINVRIQMYDELSSLDALL 81
Query: 75 NAITDLLAELSLFEERF 91
A+++L E+++
Sbjct: 82 EALSNLDDLCETVEQKY 98
>gi|342878460|gb|EGU79797.1| hypothetical protein FOXB_09656 [Fusarium oxysporum Fo5176]
Length = 136
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ L P+V AGYK HP + +R+Q
Sbjct: 26 KKIEEKVFSGMSNTSDFVLMKEDHTLGNLLSEHLKMHPNVYMAGYKIAHPNVPELFIRVQ 85
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP D + L+ +L + + F
Sbjct: 86 TDGTITPRDVFTSVCEKLIKQLEMLHQEF 114
>gi|389639282|ref|XP_003717274.1| DNA-directed RNA polymerase I and III polypeptide [Magnaporthe
oryzae 70-15]
gi|351643093|gb|EHA50955.1| DNA-directed RNA polymerase I and III polypeptide [Magnaporthe
oryzae 70-15]
Length = 149
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+K L AA F KE HT+GN +R ++K+P V Y PHP EHK LRIQT
Sbjct: 49 VKMLPGSTETAASFEFLKEGHTMGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYE 108
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+T +AL + DL + ++F
Sbjct: 109 GTTAIEALEKGLKDLQELCDVVTDKF 134
>gi|384248587|gb|EIE22071.1| RBP11-like subunits of RNA polymerase [Coccomyxa subellipsoidea
C-169]
Length = 105
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 38/70 (54%)
Query: 11 TKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPH 70
T F + EDHTL N +R+ L ++PHV F GY PHP E LRIQTT E +
Sbjct: 5 TGADTGVTFALEDEDHTLANSLRHLLNRNPHVSFVGYSIPHPSEKVVNLRIQTTGEISAV 64
Query: 71 DALMNAITDL 80
+AL A L
Sbjct: 65 EALRQACQSL 74
>gi|115487728|ref|NP_001066351.1| Os12g0194700 [Oryza sativa Japonica Group]
gi|77553282|gb|ABA96078.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113648858|dbj|BAF29370.1| Os12g0194700 [Oryza sativa Japonica Group]
gi|125578768|gb|EAZ19914.1| hypothetical protein OsJ_35508 [Oryza sativa Japonica Group]
gi|215768489|dbj|BAH00718.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218186562|gb|EEC68989.1| hypothetical protein OsI_37758 [Oryza sativa Indica Group]
Length = 108
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
A+ F++ +EDHTL N +R L +DP V F GY PHP ++K +R+QTT + D L +
Sbjct: 11 ASTFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTGDPA-KDVLKD 69
Query: 76 AITDLL 81
++ DL+
Sbjct: 70 SLQDLM 75
>gi|452841596|gb|EME43533.1| hypothetical protein DOTSEDRAFT_63729 [Dothistroma septosporum
NZE10]
Length = 133
Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 44/86 (51%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
++ LD AA F+ EDHTLGN +R L KDP V F GY PHP E +RIQT
Sbjct: 30 LRVLDGYTDTAASFSFENEDHTLGNALRYMLTKDPDVEFCGYSIPHPSEPFMNIRIQTWD 89
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+ L A+ +L EE+F
Sbjct: 90 GVHVNVVLRRALENLADLCDAVEEKF 115
>gi|406864812|gb|EKD17855.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 142
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 43/78 (55%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K I+ L AA F KEDHTLGN +R ++K+P+V F GY PHP E +RIQT
Sbjct: 43 KRIRILPGSSDTAASFEFKKEDHTLGNSLRYIIMKNPNVEFCGYSIPHPSEELMNIRIQT 102
Query: 64 TAESTPHDALMNAITDLL 81
+T AL DL+
Sbjct: 103 YEGTTAVAALDKGFQDLM 120
>gi|425773962|gb|EKV12287.1| hypothetical protein PDIG_46120 [Penicillium digitatum PHI26]
gi|425782350|gb|EKV20265.1| hypothetical protein PDIP_18050 [Penicillium digitatum Pd1]
Length = 138
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HT+GN +R ++K+P V F GY PHP + K +RIQT +T +AL
Sbjct: 46 AASFQFEGEGHTMGNALRYAIMKNPAVEFCGYTIPHPSDPKMNVRIQTNDTTTALEALEK 105
Query: 76 AITDLLAELSLFEERF 91
DL+ + E+F
Sbjct: 106 GFNDLMDLCDVVTEKF 121
>gi|440795586|gb|ELR16706.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 129
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
N T++ EDHTLGN +R L+K+P V F GY PHP E K +RIQT +AL
Sbjct: 28 NLITVTLSNEDHTLGNSLRWILMKNPEVDFCGYSVPHPSEPKMNVRIQTKDGKPSVEALR 87
Query: 75 NAITDLLA----ELSLFEERF 91
+ DL++ L F+ F
Sbjct: 88 KGLNDLVSIAEYTLGTFQSEF 108
>gi|410058836|ref|XP_003318424.2| PREDICTED: uncharacterized protein LOC100610393 [Pan troglodytes]
Length = 231
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 36/53 (67%)
Query: 39 DPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
DP VL PHPLE K I+ QTT + +P +AL NAI DL++ELSL EERF
Sbjct: 125 DPQVLLLLXXVPHPLERKIIIEXQTTPDYSPQEALPNAIADLISELSLLEERF 177
>gi|119467720|ref|XP_001257666.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Neosartorya fischeri NRRL 181]
gi|119405818|gb|EAW15769.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Neosartorya fischeri NRRL 181]
Length = 142
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F GY PHP E K LRIQT +T +AL
Sbjct: 50 AASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYDSTTAVEALEK 109
Query: 76 AITDLLAELSLFEERF 91
+ L+ + ++F
Sbjct: 110 GLEALMDLCDVVTDKF 125
>gi|255722409|ref|XP_002546139.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240136628|gb|EER36181.1| DNA-directed RNA polymerases I and III 14 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 128
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+A F + EDHTLGN +R ++K+P V F GY PHP E+K RIQT T +A
Sbjct: 39 SASFQIIDEDHTLGNALRYIIMKNPEVEFVGYSIPHPSENKLNFRIQTYGNITAVEAFHM 98
Query: 76 AITDLLAELSLFEERF 91
+ +L + E++F
Sbjct: 99 GLDNLSELCGVIEDKF 114
>gi|310792346|gb|EFQ27873.1| hypothetical protein GLRG_03017 [Glomerella graminicola M1.001]
Length = 125
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ L +VL AGYK HP + +R+Q
Sbjct: 17 KKIEEKVFSGMSNTSDFIIKKEDHTLGNLLSEHLKMHKNVLMAGYKISHPNVPEMFIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T T +AL+ I L+ +LS F
Sbjct: 77 TDGSITAKEALVQVIKKLMQDLSHLSREF 105
>gi|317035305|ref|XP_001396609.2| DNA-directed RNA polymerases I and III subunit RPAC2 [Aspergillus
niger CBS 513.88]
Length = 138
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F GY PHP E K LRIQT +T +AL
Sbjct: 46 AASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEALEK 105
Query: 76 AITDLLAELSLFEERF 91
+ L+ + ++F
Sbjct: 106 GLDTLMDLCDVVTDKF 121
>gi|255945795|ref|XP_002563665.1| Pc20g11790 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588400|emb|CAP86508.1| Pc20g11790 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 137
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HT+GN +R ++K+P V F GY PHP + K +RIQT +T +AL
Sbjct: 45 AASFQFEGEGHTMGNALRYAIMKNPAVEFCGYTIPHPSDPKMNVRIQTNDTTTALEALEK 104
Query: 76 AITDLLAELSLFEERF 91
DL+ + E+F
Sbjct: 105 GFDDLMDLCDVVTEKF 120
>gi|134082123|emb|CAK42239.1| unnamed protein product [Aspergillus niger]
Length = 153
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F GY PHP E K LRIQT +T +AL
Sbjct: 61 AASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEALEK 120
Query: 76 AITDLLAELSLFEERF 91
+ L+ + ++F
Sbjct: 121 GLDTLMDLCDVVTDKF 136
>gi|358369667|dbj|GAA86281.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus kawachii IFO 4308]
Length = 137
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F GY PHP E K LRIQT +T +AL
Sbjct: 45 AASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEALEK 104
Query: 76 AITDLLAELSLFEERF 91
+ L+ + ++F
Sbjct: 105 GLDTLMDLCDVVTDKF 120
>gi|115386266|ref|XP_001209674.1| hypothetical protein ATEG_06988 [Aspergillus terreus NIH2624]
gi|114190672|gb|EAU32372.1| hypothetical protein ATEG_06988 [Aspergillus terreus NIH2624]
Length = 142
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F GY PHP E K LRIQT + +AL
Sbjct: 50 AASFQFEGEGHTLGNALRYAIMKNPQVEFCGYTIPHPSETKMNLRIQTYDTTNAVEALEK 109
Query: 76 AITDLLAELSLFEERF 91
+ L+ + E+F
Sbjct: 110 GLDSLMDLCDVVTEKF 125
>gi|350636095|gb|EHA24455.1| hypothetical protein ASPNIDRAFT_40356 [Aspergillus niger ATCC 1015]
Length = 138
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F GY PHP E K LRIQT +T +AL
Sbjct: 46 AASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSETKMNLRIQTYETTTAVEALEK 105
Query: 76 AITDLLAELSLFEERF 91
+ L+ + ++F
Sbjct: 106 GLDTLMDLCDVVTDKF 121
>gi|336257723|ref|XP_003343685.1| hypothetical protein SMAC_08854 [Sordaria macrospora k-hell]
gi|380091918|emb|CCC10647.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 157
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
++ L P AA F +E+HTLGN +R ++K+P V F Y PHP E K +RIQT
Sbjct: 56 VRLLPGSTPTAASFEFLEENHTLGNALRYVIMKNPDVEFCAYAIPHPSEAKMNVRIQTYE 115
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+T +AL + D+ + ++F
Sbjct: 116 GTTAVEALRKGLRDIQELCDVVSDKF 141
>gi|426195181|gb|EKV45111.1| hypothetical protein AGABI2DRAFT_186894 [Agaricus bisporus var.
bisporus H97]
Length = 112
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+AA F ++ E HT+GN +R L+K+P V F GY PHP E+ +RIQ + DAL+
Sbjct: 20 SAATFQIHDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENVINVRIQMYDNISSFDALI 79
Query: 75 NAITDL 80
+A+ +L
Sbjct: 80 SALDNL 85
>gi|399217331|emb|CCF74218.1| unnamed protein product [Babesia microti strain RI]
Length = 116
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK F ++ EDHT+G +I++QL D +V F GY+ PHPLE LR++T ++S P
Sbjct: 31 DTKFSMCGTFIIHLEDHTMGALIKSQLNLDENVTFVGYRIPHPLESLLELRVKTRSKS-P 89
Query: 70 HDALMNAITDLLAELS 85
+L+ A+ L +++S
Sbjct: 90 ISSLLYALGMLKSDVS 105
>gi|358392256|gb|EHK41660.1| hypothetical protein TRIATDRAFT_302116 [Trichoderma atroviride IMI
206040]
Length = 128
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ L P+V AGYK HP + +R+Q
Sbjct: 17 KKIEEKVYSGMSNTSDFVLKKEDHTLGNLLAEHLKAHPNVYMAGYKIAHPNVPELYIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T +P D + L+ +L + + F
Sbjct: 77 TDGTISPRDVFTSVCEKLINQLEMLYQEF 105
>gi|225434732|ref|XP_002281351.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
isoform 1 [Vitis vinifera]
gi|297745971|emb|CBI16027.3| unnamed protein product [Vitis vinifera]
Length = 105
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
+ F+++ EDHTL N IR L +DP V F GY PHP + + +R+QTT +S + L +A
Sbjct: 12 STFSLSDEDHTLANSIRFTLNQDPRVAFCGYSIPHPSDARVNIRVQTTGDSA-REVLKDA 70
Query: 77 ITDLL 81
DL+
Sbjct: 71 CQDLM 75
>gi|83286192|ref|XP_730053.1| RNA polymerases L / 13 to 16 kDa subunit [Plasmodium yoelii
yoelii 17XNL]
gi|23489608|gb|EAA21618.1| RNA polymerases L / 13 to 16 kDa subunit, putative [Plasmodium
yoelii yoelii]
Length = 117
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ IFT+ EDHTLGN+I+ L +DP V FA Y+QPHPL+++ + I+ + L
Sbjct: 10 DCNIFTIKLEDHTLGNLIKQSLCQDPKVTFAAYRQPHPLQNEIEITIRPKGYAGV-KLLS 68
Query: 75 NAITDLLAELSLFEERF 91
+ + +L ++S E F
Sbjct: 69 DNVHTILNQVSTLRETF 85
>gi|302764430|ref|XP_002965636.1| hypothetical protein SELMODRAFT_28501 [Selaginella
moellendorffii]
gi|300166450|gb|EFJ33056.1| hypothetical protein SELMODRAFT_28501 [Selaginella
moellendorffii]
Length = 51
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE 66
++ F +N EDHT GN IR L DP V F GY PHP +++ +R+QTT +
Sbjct: 1 SSTFCINDEDHTFGNSIRYVLNGDPRVTFCGYSVPHPSDNRVNVRVQTTGK 51
>gi|403223937|dbj|BAM42067.1| RNA polymerases I and III subunit [Theileria orientalis strain
Shintoku]
Length = 981
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+ ++D K PN F++ EDHTLGN +R L++ V+FAGY PHP+E + +RIQTT
Sbjct: 1 MDKVDYKSPNIT-FSIENEDHTLGNTLRAVLVERDDVIFAGYSVPHPMEPEMNVRIQTTE 59
Query: 66 E 66
E
Sbjct: 60 E 60
>gi|340370096|ref|XP_003383582.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Amphimedon queenslandica]
Length = 107
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F + EDHTLGN +R L+K+P V F GY PHP E K LRIQTT S + L +
Sbjct: 24 FVLQDEDHTLGNALRWILIKNPDVSFCGYSTPHPSERKINLRIQTTGISAT-EVLRRGLE 82
Query: 79 DL 80
DL
Sbjct: 83 DL 84
>gi|237823487|pdb|2WAQ|L Chain L, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823501|pdb|2WB1|L Chain L, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823502|pdb|2WB1|M Chain M, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462799|pdb|2Y0S|L Chain L, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
gi|323462800|pdb|2Y0S|M Chain M, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
gi|400260751|pdb|4AYB|L Chain L, Rnap At 3.2ang
gi|400260768|pdb|4B1O|L Chain L, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260778|pdb|4B1P|M Chain M, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814447|gb|ACL36497.1| RNA polymerase subunit 11 [Sulfolobus shibatae B12]
Length = 92
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
+ EDHTLGN+I L K V FA Y QPHPL K I++I T P DAL+ AI
Sbjct: 17 IEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAI 73
>gi|227828072|ref|YP_002829852.1| RNA polymerase dimerisation [Sulfolobus islandicus M.14.25]
gi|227830809|ref|YP_002832589.1| RNA polymerase dimerisation [Sulfolobus islandicus L.S.2.15]
gi|229579705|ref|YP_002838104.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.G.57.14]
gi|229581629|ref|YP_002840028.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.N.15.51]
gi|229585341|ref|YP_002843843.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.27]
gi|238620302|ref|YP_002915128.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.4]
gi|284998323|ref|YP_003420091.1| RNA polymerase, dimerization [Sulfolobus islandicus L.D.8.5]
gi|385773780|ref|YP_005646347.1| RNA polymerase dimerization [Sulfolobus islandicus HVE10/4]
gi|385776415|ref|YP_005648983.1| RNA polymerase dimerization [Sulfolobus islandicus REY15A]
gi|259494225|sp|C3MZG6.1|RPOL_SULIA RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494226|sp|C4KIP6.1|RPOL_SULIK RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494227|sp|C3MRD1.1|RPOL_SULIL RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494228|sp|C3MXM0.1|RPOL_SULIM RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494229|sp|C3NFY8.1|RPOL_SULIN RecName: Full=DNA-directed RNA polymerase subunit L
gi|259494367|sp|C3N7I8.1|RPOL_SULIY RecName: Full=DNA-directed RNA polymerase subunit L
gi|227457257|gb|ACP35944.1| RNA polymerase dimerisation [Sulfolobus islandicus L.S.2.15]
gi|227459868|gb|ACP38554.1| RNA polymerase dimerisation [Sulfolobus islandicus M.14.25]
gi|228010420|gb|ACP46182.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.G.57.14]
gi|228012345|gb|ACP48106.1| RNA polymerase dimerisation [Sulfolobus islandicus Y.N.15.51]
gi|228020391|gb|ACP55798.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.27]
gi|238381372|gb|ACR42460.1| RNA polymerase dimerisation [Sulfolobus islandicus M.16.4]
gi|284446219|gb|ADB87721.1| RNA polymerase, dimerization [Sulfolobus islandicus L.D.8.5]
gi|323475163|gb|ADX85769.1| RNA polymerase dimerization [Sulfolobus islandicus REY15A]
gi|323477895|gb|ADX83133.1| RNA polymerase dimerization [Sulfolobus islandicus HVE10/4]
Length = 92
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
+ EDHTLGN+I L K V FA Y QPHPL K I++I T P DAL+ AI
Sbjct: 17 IEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAI 73
>gi|340522866|gb|EGR53099.1| predicted protein [Trichoderma reesei QM6a]
Length = 128
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ L P+V AGYK HP + +R+Q
Sbjct: 17 KKIEEKVYSGMSNTSDFLLKKEDHTLGNLLSEHLKAHPNVYMAGYKIAHPNVPELYIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T +P D + L+ +L + + F
Sbjct: 77 TDGTISPRDVFTSVCEKLINQLEMLYQEF 105
>gi|159490407|ref|XP_001703168.1| RNA polymerase subunit [Chlamydomonas reinhardtii]
gi|158270708|gb|EDO96544.1| RNA polymerase subunit [Chlamydomonas reinhardtii]
Length = 99
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
AA F++ +EDHTL N +R L K+PHV F GY PHP E LR+QTT
Sbjct: 10 AATFSIEEEDHTLANSLRFFLNKNPHVAFCGYSMPHPSEELVNLRVQTTG 59
>gi|149246468|ref|XP_001527691.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
gi|146447645|gb|EDK42033.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
Length = 135
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+A F + EDHTLGN +R ++K+P V F GY PHP E+K +RIQT + +AL
Sbjct: 46 SASFQILDEDHTLGNALRYMIMKNPEVEFCGYSIPHPSENKLNVRIQTYGNISAVEALHQ 105
Query: 76 AITDLLAELS 85
+ D L+EL
Sbjct: 106 GL-DNLSELC 114
>gi|367025619|ref|XP_003662094.1| hypothetical protein MYCTH_2302244 [Myceliophthora thermophila
ATCC 42464]
gi|347009362|gb|AEO56849.1| hypothetical protein MYCTH_2302244 [Myceliophthora thermophila
ATCC 42464]
Length = 116
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDA 72
+ N + F + KEDHTLGN++ L PHV+ AGYK HP + ++R+QT TP +A
Sbjct: 1 MSNCSDFILLKEDHTLGNLLSAYLKMAPHVMMAGYKIGHPNVPEVLIRVQTDGTITPREA 60
Query: 73 LMNAITDLLAELSLFEERF 91
L+ L+A F
Sbjct: 61 LVTVCKQLVAMYGQLGREF 79
>gi|260812261|ref|XP_002600839.1| hypothetical protein BRAFLDRAFT_75869 [Branchiostoma floridae]
gi|229286129|gb|EEN56851.1| hypothetical protein BRAFLDRAFT_75869 [Branchiostoma floridae]
Length = 110
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
++ LD+ + F ++ EDHTLGN +R ++K+P V F GY PHP EHK LRIQ+
Sbjct: 1 VQTLDSD-ESCQTFVLHDEDHTLGNALRYMIMKNPDVDFCGYSVPHPSEHKINLRIQSRG 59
Query: 66 ESTPHDALMNAITDLLA 82
D L +T+L A
Sbjct: 60 PPAA-DILRRGLTELNA 75
>gi|221113159|ref|XP_002160299.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Hydra magnipapillata]
Length = 127
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
F + EDHT+GN +R ++K+P V + GY PHP E K LRIQT + P DAL
Sbjct: 26 CQTFVFHNEDHTIGNSLRYMIMKNPEVQYCGYSNPHPSEPKINLRIQTHKIAAP-DALQK 84
Query: 76 AITDL 80
+ DL
Sbjct: 85 GLLDL 89
>gi|443685824|gb|ELT89297.1| hypothetical protein CAPTEDRAFT_127647, partial [Capitella
teleta]
Length = 93
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
A F ++ EDHTLGN +R+ ++K+P V F GY PHP E K LRIQT S
Sbjct: 14 CATFVLHGEDHTLGNSLRHMIMKNPDVEFCGYSVPHPSETKINLRIQTKGPS 65
>gi|15922592|ref|NP_378261.1| DNA-directed RNA polymerase subunit L [Sulfolobus tokodaii str.
7]
gi|21263952|sp|Q96YA7.1|RPOL_SULTO RecName: Full=DNA-directed RNA polymerase subunit L
gi|15623382|dbj|BAB67370.1| DNA-directed RNA polymerase subunit L [Sulfolobus tokodaii str.
7]
Length = 93
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
++ E+HT+GN+++ LLK P V FA Y +PHPL IL+I T +P +AL+ AI
Sbjct: 15 LQIDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALVKAI 73
>gi|46124881|ref|XP_386994.1| hypothetical protein FG06818.1 [Gibberella zeae PH-1]
Length = 239
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ L P+V AGYK HP + +R+Q
Sbjct: 129 KKIEEKVFSGMSNTSDFVLMKEDHTLGNLLSEHLKMHPNVHMAGYKIAHPNVPELFIRVQ 188
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP D + L+ +L + + F
Sbjct: 189 TDGTITPRDVFTSVCEKLINQLEMLHQEF 217
>gi|408388350|gb|EKJ68036.1| hypothetical protein FPSE_11847 [Fusarium pseudograminearum CS3096]
Length = 136
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ L P+V AGYK HP + +R+Q
Sbjct: 26 KKIEEKVFSGMSNTSDFVLMKEDHTLGNLLSEHLKMHPNVHMAGYKIAHPNVPELFIRVQ 85
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP D + L+ +L + + F
Sbjct: 86 TDGTITPRDVFTSVCEKLINQLEMLHQEF 114
>gi|322696273|gb|EFY88068.1| DNA-directed RNA polymerase II subunit RPB11 [Metarhizium acridum
CQMa 102]
Length = 128
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
++I +++ + + N + F +NKEDHTLGN++ + P+V AGYK HP + +R+Q
Sbjct: 17 KRIEEKVYSGMSNTSDFILNKEDHTLGNLLSEHIKAHPNVYMAGYKLGHPNVPQLFIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP + L+ +L + F
Sbjct: 77 TDGTKTPREVFTAVCEKLINQLESLHQEF 105
>gi|322704990|gb|EFY96579.1| DNA-directed RNA polymerase II subunit RPB11 [Metarhizium
anisopliae ARSEF 23]
Length = 128
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
++I +++ + + N + F +NKEDHTLGN++ + P+V AGYK HP + +R+Q
Sbjct: 17 KRIEEKVYSGMSNTSDFILNKEDHTLGNLLSEHIKAHPNVYMAGYKLGHPNVPQLFIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T TP + L+ +L + F
Sbjct: 77 TDGTKTPREVFTAVCEKLINQLESLHQEF 105
>gi|85084361|ref|XP_957305.1| hypothetical protein NCU00419 [Neurospora crassa OR74A]
gi|28918394|gb|EAA28069.1| hypothetical protein NCU00419 [Neurospora crassa OR74A]
Length = 156
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
++ L P AA F E+HTLGN +R ++K+P V F Y PHP E K +RIQT
Sbjct: 55 VRLLPGSTPTAASFEFLDENHTLGNALRYVIMKNPDVEFCAYAIPHPSEAKMNVRIQTYE 114
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+T +AL + D+ + ++F
Sbjct: 115 GTTAVEALRKGLRDIQDLCDVVSDKF 140
>gi|67540776|ref|XP_664162.1| hypothetical protein AN6558.2 [Aspergillus nidulans FGSC A4]
gi|40738708|gb|EAA57898.1| hypothetical protein AN6558.2 [Aspergillus nidulans FGSC A4]
gi|259480131|tpe|CBF70983.1| TPA: DNA-directed RNA polymerase I and III 14 KDA polypeptide
(AFU_orthologue; AFUA_6G04610) [Aspergillus nidulans
FGSC A4]
Length = 137
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F GY PHP E K +RIQT +T +AL
Sbjct: 45 AASFQFEGEGHTLGNALRFAIMKNPEVEFCGYTIPHPSESKMNIRIQTYDSTTAVEALEK 104
Query: 76 AITDLLAELSLFEERF 91
+ L+ + ++F
Sbjct: 105 GLDTLMDLCDVVTDKF 120
>gi|301112645|ref|XP_002998093.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262112387|gb|EEY70439.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 107
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+ + ++EDHTLGN +R L+++P V F GY PHP E K +R+QT + +AL +
Sbjct: 18 SKTYVFHEEDHTLGNAVRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGALADEALRS 77
Query: 76 AITDL 80
+TDL
Sbjct: 78 GLTDL 82
>gi|242068175|ref|XP_002449364.1| hypothetical protein SORBIDRAFT_05g008640 [Sorghum bicolor]
gi|241935207|gb|EES08352.1| hypothetical protein SORBIDRAFT_05g008640 [Sorghum bicolor]
Length = 107
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
++ F++ +EDHTL N R L +DP V F GY PHP E K +R+QTT ++ D L +
Sbjct: 11 SSTFSIMEEDHTLANSARFVLNQDPRVAFCGYSIPHPAEKKVNIRVQTTGDAAK-DVLKD 69
Query: 76 AITDLL 81
A+ +L+
Sbjct: 70 ALQNLM 75
>gi|300175723|emb|CBK21266.2| unnamed protein product [Blastocystis hominis]
Length = 99
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
++KI + ++TK+ N+ + + EDHTLGN++R +++DP+V F GY+ PHPL +R+
Sbjct: 16 MKKITQIVETKMNNSCKYIIEVEDHTLGNIMRMDMIEDPNVKFVGYRVPHPLSTCIEMRV 75
>gi|238494098|ref|XP_002378285.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus flavus NRRL3357]
gi|317148865|ref|XP_001822973.2| DNA-directed RNA polymerases I and III subunit RPAC2 [Aspergillus
oryzae RIB40]
gi|220694935|gb|EED51278.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus flavus NRRL3357]
gi|391872363|gb|EIT81490.1| DNA-directed RNA polymerase, subunit L [Aspergillus oryzae 3.042]
Length = 142
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F GY PHP E K LRIQT + +AL
Sbjct: 50 AASFQFEGEGHTLGNALRYAIMKNPQVEFCGYTIPHPSETKMNLRIQTYDTTNAVEALEK 109
Query: 76 AITDLLAELSLFEERF 91
+ L+ + ++F
Sbjct: 110 GLDSLMDLCDVVTDKF 125
>gi|443730362|gb|ELU15913.1| hypothetical protein CAPTEDRAFT_128661, partial [Capitella
teleta]
Length = 94
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
A F ++ EDHTLGN +R+ ++K+P V F GY PHP E K LRIQT
Sbjct: 12 CATFVLHGEDHTLGNSLRHMIMKNPDVEFCGYSVPHPSETKINLRIQTKG 61
>gi|367028040|ref|XP_003663304.1| hypothetical protein MYCTH_2036258, partial [Myceliophthora
thermophila ATCC 42464]
gi|347010573|gb|AEO58059.1| hypothetical protein MYCTH_2036258, partial [Myceliophthora
thermophila ATCC 42464]
Length = 157
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
++ L P AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT
Sbjct: 63 VRLLPGSTPTAASFEFLNEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNVRIQTFE 122
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+T +AL + DL + ++F
Sbjct: 123 GTTAIEALQKGLRDLQELCDIVTDKF 148
>gi|290983816|ref|XP_002674624.1| 13 to 16 kDa subunit of RNA polymerase [Naegleria gruberi]
gi|284088215|gb|EFC41880.1| 13 to 16 kDa subunit of RNA polymerase [Naegleria gruberi]
Length = 157
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 14 PNAAI--FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT-----TAE 66
P+A++ F +KE HT+GN +R+ L+K+ V F GY PHPLE K LR+QT TA+
Sbjct: 68 PDASVSTFIFHKESHTMGNSVRHMLMKNKKVSFCGYTVPHPLEAKMNLRLQTVGEKYTAK 127
Query: 67 STPHDALMN 75
T + L+N
Sbjct: 128 ETLEEGLVN 136
>gi|392576372|gb|EIW69503.1| hypothetical protein TREMEDRAFT_71650 [Tremella mesenterica DSM
1558]
Length = 154
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+A F + EDHTLGN +R L+KDP V F GY PHP + K LR+Q + + L
Sbjct: 43 SACTFCLWNEDHTLGNALRWMLMKDPDVEFCGYSAPHPSDPKIHLRVQMYDNLSAVECLR 102
Query: 75 NAITDL 80
A+ +L
Sbjct: 103 KALKNL 108
>gi|358389646|gb|EHK27238.1| hypothetical protein TRIVIDRAFT_63005 [Trichoderma virens Gv29-8]
Length = 126
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLGN++ + P+V AGYK HP + +R+Q
Sbjct: 17 KKIEEKVYSGMSNTSDFILKKEDHTLGNLLAEHIKAHPNVYMAGYKIAHPNVPELYIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T +P D + L+ +L + + F
Sbjct: 77 TDGTISPRDVFTSVCEKLINQLEMLYQEF 105
>gi|308801407|ref|XP_003078017.1| trithorax-like (ISS) [Ostreococcus tauri]
gi|116056468|emb|CAL52757.1| trithorax-like (ISS) [Ostreococcus tauri]
Length = 2007
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT------TAESTPH 70
A FT+ EDHTLGN +R L +P V GY PHP+E + +R+QT TA
Sbjct: 1920 ATFTLEGEDHTLGNALRYVLNANPSVTLCGYSAPHPMERRVNVRVQTHGREGATARGAMR 1979
Query: 71 DALMNAIT 78
DAL++ I+
Sbjct: 1980 DALLDVIS 1987
>gi|387018232|gb|AFJ51234.1| DNA-directed RNA polymerases I and III subunit RPAC2-like [Crotalus
adamanteus]
Length = 114
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
F +N EDHTLGN +R ++K+P + F GY HP E K RIQT DA
Sbjct: 25 CVTFVLNNEDHTLGNSLRYMIMKNPEIEFCGYSITHPSESKINFRIQTRGGLPAIDAFQK 84
Query: 76 AITDLLA----ELSLFE 88
+ DL LS FE
Sbjct: 85 GLEDLTGVCQHVLSTFE 101
>gi|253745917|gb|EET01521.1| DNA-directed RNA polymerases I and III 16 kDa polypeptide
[Giardia intestinalis ATCC 50581]
Length = 95
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F + EDHTLGN IR L +P V FAGY PHP E K LRIQ+ S D L+ A
Sbjct: 6 ATFVIVNEDHTLGNCIRYCLNCNPDVSFAGYSVPHPAEPKLNLRIQSDIRSAT-DCLLQA 64
Query: 77 ITDLLAEL-SLFEERF 91
DL+ + S+ +R
Sbjct: 65 -ADLMYNIASVLRQRL 79
>gi|320590409|gb|EFX02852.1| DNA-directed RNA polymerase 1 and 3 polypeptide [Grosmannia
clavigera kw1407]
Length = 171
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+K L P AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT
Sbjct: 72 VKLLPGSTPTAASFEFLDEGHTLGNSLRYIIMKNPDVEFCAYTIPHPSEAKMNIRIQTY- 130
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
E T AL + DL + EE++
Sbjct: 131 EGTALQALEKGLHDLQDLCDVVEEKY 156
>gi|296479321|tpg|DAA21436.1| TPA: polymerase (RNA) I polypeptide D-like [Bos taurus]
Length = 133
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT +
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQR 98
Query: 76 AITDLL 81
+TDL+
Sbjct: 99 GVTDLM 104
>gi|348672539|gb|EGZ12359.1| hypothetical protein PHYSODRAFT_361522 [Phytophthora sojae]
Length = 107
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+ + ++EDHTLGN +R L+++P V F GY PHP E K +R+QT + +AL +
Sbjct: 18 SKTYVFHEEDHTLGNALRYVLMRNPDVDFCGYTIPHPSEPKMHIRLQTRQGAPADEALRS 77
Query: 76 AITDL 80
+TDL
Sbjct: 78 GLTDL 82
>gi|156084318|ref|XP_001609642.1| RNA polymerase small subunit protein [Babesia bovis T2Bo]
gi|154796894|gb|EDO06074.1| RNA polymerase small subunit protein, putative [Babesia bovis]
Length = 96
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+ ++D+ PN F++ EDHTLGN +R L++ V FAGY PHP++ + +RIQTT
Sbjct: 1 MDKVDSSSPNIT-FSIENEDHTLGNAVRTLLVEREDVFFAGYSVPHPMQPEVNIRIQTTG 59
Query: 66 E 66
+
Sbjct: 60 K 60
>gi|70948405|ref|XP_743717.1| DNA-directed RNA polymerase 2 [Plasmodium chabaudi chabaudi]
gi|74976313|sp|Q4XS21.1|RPB11_PLACH RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|56523351|emb|CAH80291.1| DNA-directed RNA polymerase 2, putative [Plasmodium chabaudi
chabaudi]
Length = 126
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ IFT+ EDHT+GN+I+ L +DP V FA Y+QPHPL++ + I+ + L
Sbjct: 34 DCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNAIEITIRPKGYAGV-KLLS 92
Query: 75 NAITDLLAELSLFEERF 91
+ + +L ++S E F
Sbjct: 93 DNVHSILNQVSTLRETF 109
>gi|346325285|gb|EGX94882.1| DNA-directed RNA polymerase II subunit RPB11a, putative [Cordyceps
militaris CM01]
Length = 134
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI +++ + + N + F + KEDHTLG+++ L P+VL AGYK HP + +R+Q
Sbjct: 23 KKIEEKIYSGMSNTSDFLLKKEDHTLGHLLSEHLKMHPNVLMAGYKLGHPNVPELFIRVQ 82
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T T D L+ +L + ++F
Sbjct: 83 TDGTVTSRDVFTAVCEKLINQLEMLHQKF 111
>gi|440468859|gb|ELQ37993.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Magnaporthe oryzae Y34]
gi|440487550|gb|ELQ67333.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Magnaporthe oryzae P131]
Length = 151
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT-- 63
+K L AA F KE HT+GN +R ++K+P V Y PHP EHK LRIQT
Sbjct: 49 VKMLPGSTETAASFEFLKEGHTMGNALRYIIMKNPEVELCAYAIPHPSEHKMNLRIQTYA 108
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T +T +AL + DL + ++F
Sbjct: 109 TEGTTAIEALEKGLKDLQELCDVVTDKF 136
>gi|121703648|ref|XP_001270088.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus clavatus NRRL 1]
gi|119398232|gb|EAW08662.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus clavatus NRRL 1]
Length = 142
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F GY PHP E K LRIQT + +AL
Sbjct: 50 AASFQFEGEGHTLGNALRYTIMKNPEVEFCGYTIPHPSEAKMNLRIQTYDTTNAVEALEK 109
Query: 76 AITDLLAELSLFEERF 91
+ L+ + ++F
Sbjct: 110 GLEALMDLCDVVTDKF 125
>gi|224059388|ref|XP_002299838.1| predicted protein [Populus trichocarpa]
gi|222847096|gb|EEE84643.1| predicted protein [Populus trichocarpa]
Length = 102
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P++A F EDHTL N +R L +DP V F GY PHP + K +R+QTT + + L
Sbjct: 9 PSSATFCFVDEDHTLANSVRFALNQDPRVSFCGYSIPHPSDAKVNIRVQTTGDPA-REVL 67
Query: 74 MNAITDLL 81
+A +L+
Sbjct: 68 KDACQNLM 75
>gi|332796908|ref|YP_004458408.1| RNA polymerase dimerization [Acidianus hospitalis W1]
gi|332694643|gb|AEE94110.1| RNA polymerase dimerization [Acidianus hospitalis W1]
Length = 91
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI+K DT A + E+HTLGN++ L K V++A Y QPHPL + +L++ T
Sbjct: 4 KILKSSDT----YAEIEIEGEEHTLGNLLAGSLRKVEGVIYASYYQPHPLVNSIVLKVMT 59
Query: 64 TAESTPHDALMNAI 77
E P DA+ AI
Sbjct: 60 NGEIKPMDAIKKAI 73
>gi|119196667|ref|XP_001248937.1| hypothetical protein CIMG_02708 [Coccidioides immitis RS]
Length = 99
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE-STPH 70
AA F EDHTLGN +R ++K+P V F GY PHP E K LRIQT + + PH
Sbjct: 44 AASFQFEGEDHTLGNALRYIIMKNPDVEFCGYTMPHPSETKMNLRIQTYGKLAVPH 99
>gi|340059083|emb|CCC53456.1| putative DNA-dependent RNA polymerases [Trypanosoma vivax Y486]
Length = 135
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 11 TKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
T+ +AA + EDHTLGN +R+ L+++ V AGY PHPLE K +L +Q+TA
Sbjct: 41 TETESAATVAFSHEDHTLGNSLRHVLMQNAQVTSAGYAIPHPLEEKMLLHVQSTA 95
>gi|115497472|ref|NP_001069612.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Bos taurus]
gi|122143797|sp|Q1RMG8.1|RPAC2_BOVIN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=DNA-directed RNA polymerase I subunit D
gi|92096988|gb|AAI14906.1| Polymerase (RNA) I polypeptide D, 16kDa [Bos taurus]
gi|296481744|tpg|DAA23859.1| TPA: DNA-directed RNA polymerases I and III subunit RPAC2 [Bos
taurus]
gi|440900647|gb|ELR51729.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Bos grunniens
mutus]
Length = 133
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT +
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQR 98
Query: 76 AITDLL 81
+TDL+
Sbjct: 99 GLTDLM 104
>gi|115638551|ref|XP_794921.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Strongylocentrotus purpuratus]
Length = 117
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+ F ++ EDHTLGN +R ++KDP V F GY PHP E++ RIQT
Sbjct: 28 DCVTFVMHNEDHTLGNALRYMVMKDPDVEFCGYSVPHPTENRINFRIQTKG 78
>gi|156378249|ref|XP_001631056.1| predicted protein [Nematostella vectensis]
gi|156218089|gb|EDO38993.1| predicted protein [Nematostella vectensis]
Length = 85
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP-HDALMNAI 77
F ++ EDHTLGN +R ++K+P V F GY PHP E K LRIQT TP D L +
Sbjct: 7 FVLHDEDHTLGNSLRYIIMKNPDVKFCGYSIPHPSESKINLRIQT--HGTPASDVLRRGL 64
Query: 78 TDLLA 82
++L A
Sbjct: 65 SELTA 69
>gi|68072823|ref|XP_678325.1| DNA-directed RNA polymerase 2 [Plasmodium berghei strain ANKA]
gi|74991219|sp|Q4YZZ7.1|RPB11_PLABA RecName: Full=Probable DNA-directed RNA polymerase II subunit
RPB11; Short=RNA polymerase II subunit B11; AltName:
Full=DNA-directed RNA polymerase II subunit J
gi|56498758|emb|CAH96395.1| DNA-directed RNA polymerase 2, putative [Plasmodium berghei]
Length = 126
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ IFT+ EDHT+GN+I+ L +DP V FA Y+QPHPL++ + I+ + L
Sbjct: 34 DCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNVIEITIRPKGYAGV-KLLS 92
Query: 75 NAITDLLAELSLFEERF 91
+ + +L ++S E F
Sbjct: 93 DNVHTILNQVSTLRETF 109
>gi|116198139|ref|XP_001224881.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51]
gi|88178504|gb|EAQ85972.1| hypothetical protein CHGG_07225 [Chaetomium globosum CBS 148.51]
Length = 736
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 39/68 (57%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
N + F + KEDHTLGN++ L PHV+ A YK HP + LR+QT TP +ALM
Sbjct: 3 NCSDFLMLKEDHTLGNLLSVYLKMAPHVMMAAYKIGHPNVPEVQLRVQTDGTITPREALM 62
Query: 75 NAITDLLA 82
L+A
Sbjct: 63 TVCKQLVA 70
>gi|389585811|dbj|GAB68541.1| RNA polymerase small subunit [Plasmodium cynomolgi strain B]
Length = 97
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F EDHTLGN +R LL+ V FAGY PHP + + LRIQTT E +N
Sbjct: 16 ATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTGEPA-----INI 70
Query: 77 ITDLLAELS 85
+ D L +LS
Sbjct: 71 LKDSLEDLS 79
>gi|221060390|ref|XP_002260840.1| RNA polymerase small subunit [Plasmodium knowlesi strain H]
gi|193810914|emb|CAQ42812.1| RNA polymerase small subunit, putative [Plasmodium knowlesi
strain H]
Length = 94
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F EDHTLGN +R LL+ V FAGY PHP + + LRIQTT E +N
Sbjct: 16 ATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTGEPA-----VNI 70
Query: 77 ITDLLAELS 85
+ D L +LS
Sbjct: 71 LKDALDDLS 79
>gi|298706157|emb|CBJ49085.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 111
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
++A F EDHTLGN +R+ L+++ V F GY PHP E K LR+QTT + L
Sbjct: 24 SSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPA-LELLK 82
Query: 75 NAITDLLAELSLFEER 90
+ DL ++ EER
Sbjct: 83 EGLRDLRDLCNILEER 98
>gi|116208000|ref|XP_001229809.1| hypothetical protein CHGG_03293 [Chaetomium globosum CBS 148.51]
gi|88183890|gb|EAQ91358.1| hypothetical protein CHGG_03293 [Chaetomium globosum CBS 148.51]
Length = 155
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
++ L P AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT
Sbjct: 60 VRLLPGSTPTAASFEFLNEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNVRIQTFD 119
Query: 66 ESTPHDALMNAITDL 80
+T +AL + DL
Sbjct: 120 GTTAVEALEKGLRDL 134
>gi|156102216|ref|XP_001616801.1| RNA polymerase small subunit [Plasmodium vivax Sal-1]
gi|148805675|gb|EDL47074.1| RNA polymerase small subunit, putative [Plasmodium vivax]
Length = 97
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F EDHTLGN +R LL+ V FAGY PHP + + LRIQTT E +N
Sbjct: 16 ATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTGEPA-----INI 70
Query: 77 ITDLLAELS 85
+ D L +LS
Sbjct: 71 LKDSLDDLS 79
>gi|326432315|gb|EGD77885.1| hypothetical protein PTSG_09519 [Salpingoeca sp. ATCC 50818]
Length = 164
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
P +A F + EDHTLGN +R L +DP V F GY QPHP + LR+Q
Sbjct: 36 PQSATFVIANEDHTLGNSLRWILNRDPRVDFCGYSQPHPSDKLIKLRVQ 84
>gi|449544336|gb|EMD35309.1| hypothetical protein CERSUDRAFT_156998 [Ceriporiopsis
subvermispora B]
Length = 111
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI+K + + +AA + ++ E HTLGN +R L+K+P V F GY PHP E+ +RIQ
Sbjct: 9 KILKGAEPDL-SAATYQIHDESHTLGNALRWMLMKNPKVEFCGYSVPHPSENHINMRIQM 67
Query: 64 TAESTPHDALMNAITDL 80
+ AL+ A+++L
Sbjct: 68 YDNLSSLTALITALSNL 84
>gi|413920766|gb|AFW60698.1| hypothetical protein ZEAMMB73_622044 [Zea mays]
Length = 106
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
++ F++ EDHTL N R L +DP V F GY PHP E K +R+QTT ++ D L +
Sbjct: 11 SSTFSIMDEDHTLANSARFVLNQDPRVAFCGYTIPHPSEKKVNIRLQTTGDAAK-DVLKD 69
Query: 76 AITDLL 81
A+ +L+
Sbjct: 70 ALQNLM 75
>gi|429329665|gb|AFZ81424.1| RNA polymerase small subunit, putative [Babesia equi]
Length = 92
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE 66
F++ EDHTLGN++R L++ V+FAGY PHP++ + +RIQTT +
Sbjct: 10 FSIENEDHTLGNVLRTLLVERDDVVFAGYSVPHPMQPEMNIRIQTTGQ 57
>gi|399217051|emb|CCF73738.1| unnamed protein product [Babesia microti strain RI]
Length = 88
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE 66
F + EDHTLGN++R L K V FAGY PHP++++ +R+QTT +
Sbjct: 10 FCIENEDHTLGNVVRTILSKKKDVSFAGYTMPHPMQYQVNIRVQTTGK 57
>gi|358399593|gb|EHK48930.1| hypothetical protein TRIATDRAFT_297692 [Trichoderma atroviride IMI
206040]
Length = 154
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT + T +AL
Sbjct: 65 AASFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTY-DGTAVNALKK 123
Query: 76 AITDLLAELSLFEERF 91
++DL + E+F
Sbjct: 124 GLSDLQDVCDVVAEKF 139
>gi|322699006|gb|EFY90771.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Metarhizium acridum CQMa 102]
Length = 154
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+K L AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT +
Sbjct: 55 VKILPGSTDTAASFEFTDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNIRIQTYS 114
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
T DAL + DL + + F
Sbjct: 115 -GTAVDALKKGLADLQDVCDVVSDEF 139
>gi|145546486|ref|XP_001458926.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426748|emb|CAK91529.1| unnamed protein product [Paramecium tetraurelia]
Length = 97
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
NA + ED T+GN++R LLK V F+ +Q HPL+H ++++T P+DA+
Sbjct: 3 NACCVKLILEDRTIGNLLRTNLLKQKEVTFSRQRQIHPLQHTIEIKVKTKGTIKPYDAIE 62
Query: 75 NAITDLLAELSLFEERF 91
+ DL E E+ +
Sbjct: 63 KTLKDLSEEFKNLEDEW 79
>gi|390599234|gb|EIN08631.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 111
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+AA F + E HT+GN +R ++K+P V F GY PHP E +RIQ + DAL+
Sbjct: 19 SAATFQIADETHTIGNALRWMIMKNPKVEFCGYSVPHPSEPNINVRIQMYDNLSALDALI 78
Query: 75 NAITDLLAELSLFEERF 91
+A+ L + +E++
Sbjct: 79 DALNRLDDLFAAVDEQY 95
>gi|336375362|gb|EGO03698.1| hypothetical protein SERLA73DRAFT_130145 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388418|gb|EGO29562.1| hypothetical protein SERLADRAFT_378617 [Serpula lacrymans var.
lacrymans S7.9]
Length = 111
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
+I+K D + +AA + + E HT+GN +R L+K+P V F GY PHP E+ LRIQ
Sbjct: 9 RIMKGADQDL-SAATYQIFDESHTMGNALRWMLMKNPKVEFCGYSVPHPSENLIQLRIQM 67
Query: 64 TAESTPHDALMNAITDL 80
+ + AL+ A+ +L
Sbjct: 68 YDKLSSLTALLEALDNL 84
>gi|322707085|gb|EFY98664.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 155
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+K L AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT +
Sbjct: 56 VKILPGSTDTAASFEFTDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEPKMNIRIQTYS 115
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
T DAL + DL + + F
Sbjct: 116 -GTAVDALKKGLVDLQDVCDVVSDEF 140
>gi|395324917|gb|EJF57348.1| RBP11-like subunits of RNA polymerase [Dichomitus squalens
LYAD-421 SS1]
Length = 111
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+AA + ++ E HT+GN +R L+K+P V F GY PHP E+ +RIQ + AL+
Sbjct: 19 SAATYQIHDESHTIGNALRWMLMKNPKVEFCGYSVPHPSENHINMRIQMYDGLSSLAALL 78
Query: 75 NAITDL 80
A+ DL
Sbjct: 79 QALKDL 84
>gi|118349948|ref|XP_001008255.1| DNA-directed RNA polymerase I subunit D [Tetrahymena thermophila]
gi|89290022|gb|EAR88010.1| DNA-directed RNA polymerase I subunit D [Tetrahymena thermophila
SB210]
Length = 150
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ + + K A +T EDHTLGN +R L+K V F GY PHP E+K LR+QT
Sbjct: 48 KLVIDQNEKDRTCATYTFYDEDHTLGNTVRYMLVKRKDVEFCGYTIPHPSENKMNLRLQT 107
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+++ ++ L + L + ++F
Sbjct: 108 IKKNS-NEVLKEGLDSLAGLCDVLNDKF 134
>gi|70949116|ref|XP_743999.1| RNA polymerase small subunit [Plasmodium chabaudi chabaudi]
gi|56523760|emb|CAH77311.1| RNA polymerase small subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 96
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F EDHTLGN +R LL+ + FAGY PHP + + LRIQTT E +N
Sbjct: 16 ATFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTTGEPA-----INI 70
Query: 77 ITDLLAELS 85
+ D L +LS
Sbjct: 71 LKDSLDDLS 79
>gi|346324843|gb|EGX94440.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide [Cordyceps
militaris CM01]
Length = 162
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+K L AA F +E HT+GN +R ++K+P V F Y PHP E K +RIQT
Sbjct: 63 VKILPGSTDTAASFEFIEEGHTMGNALRYIIMKNPDVEFCAYTIPHPSEDKMNVRIQTY- 121
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
E T DAL + DL + + F
Sbjct: 122 EGTAIDALKKGLDDLQQVCDVVADEF 147
>gi|302916795|ref|XP_003052208.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733147|gb|EEU46495.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 147
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT + T DAL
Sbjct: 58 AASFEFVDEGHTLGNALRYIVMKNPDVEFCAYSIPHPSEPKMNIRIQTYS-GTAVDALKK 116
Query: 76 AITDLLAELSLFEERF 91
+TDL + + F
Sbjct: 117 GLTDLQDVCDVVADEF 132
>gi|400599076|gb|EJP66780.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Beauveria
bassiana ARSEF 2860]
Length = 156
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+K L AA F +E HT+GN +R ++K+P V F Y PHP E K +RIQT
Sbjct: 57 VKILPGSTETAASFEFIEEGHTMGNALRYIIMKNPDVEFCAYTIPHPSEDKMNIRIQTY- 115
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
E T DAL + DL + + F
Sbjct: 116 EGTAIDALKKGLGDLQQVCDVVADEF 141
>gi|358387089|gb|EHK24684.1| hypothetical protein TRIVIDRAFT_31426 [Trichoderma virens Gv29-8]
Length = 155
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT + T +AL
Sbjct: 66 AASFEFTDEGHTLGNALRYVIMKNPDVEFCAYSIPHPSEPKMNIRIQTY-DGTAVNALKK 124
Query: 76 AITDLLAELSLFEERF 91
++DL + E F
Sbjct: 125 GLSDLQDVCDVVAEEF 140
>gi|145344709|ref|XP_001416869.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577095|gb|ABO95162.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 100
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE--STPHDA 72
N A FT+ EDHTL N +R+ L + V GY PHP++ + +R+QTT +T A
Sbjct: 11 NEATFTLAGEDHTLANALRHALNGNADVALCGYSVPHPMKREARVRVQTTGANGTTAQGA 70
Query: 73 LMNAITDLLAELSLFEERF 91
+ +A+ D+++ E +
Sbjct: 71 MRDALLDVISVCDRVREAY 89
>gi|405969527|gb|EKC34493.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Crassostrea
gigas]
Length = 549
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F + EDHTLGN +R ++K+P V F GY PHP E K RIQT E D L +
Sbjct: 28 FVFHNEDHTLGNSLRYMVMKNPEVQFCGYSVPHPSESKINFRIQTHGE-LGTDVLKKGLK 86
Query: 79 DLLAEL 84
DL +++
Sbjct: 87 DLNSKM 92
>gi|426236489|ref|XP_004012200.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Ovis aries]
Length = 123
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT +
Sbjct: 29 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQR 88
Query: 76 AITDLL 81
+T+L+
Sbjct: 89 GLTELM 94
>gi|393217041|gb|EJD02531.1| RBP11-like subunits of RNA polymerase [Fomitiporia mediterranea
MF3/22]
Length = 111
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+AA F +N E HT+GN +R L+K+P V F GY PHP E+ +R+Q
Sbjct: 19 SAATFRLNDESHTIGNALRWMLMKNPDVEFCGYSAPHPSENAIQVRVQ 66
>gi|70984198|ref|XP_747617.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus Af293]
gi|66845244|gb|EAL85579.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus Af293]
gi|159122404|gb|EDP47525.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Aspergillus fumigatus A1163]
Length = 161
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 30/48 (62%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
AA F E HTLGN +R ++K+P V F GY PHP E K LRIQT
Sbjct: 50 AASFQFEGEGHTLGNALRYAIMKNPEVEFCGYTIPHPSEAKMNLRIQT 97
>gi|397630084|gb|EJK69633.1| hypothetical protein THAOC_09087 [Thalassiosira oceanica]
Length = 145
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHD 71
F + EDHTLGN +R+ L+ D V FAGY PHP E +R+QT S P+D
Sbjct: 28 FVLGDEDHTLGNALRHVLINDARVDFAGYCVPHPSEPVVHIRVQTNTNSKPND 80
>gi|320166880|gb|EFW43779.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 166
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
A + EDHT+GN +R L+K+P V F GY PHP E+K +R+QT S
Sbjct: 71 ATVAIKDEDHTIGNALRYMLMKNPDVEFCGYSIPHPSENKIHVRVQTVPGS 121
>gi|427794155|gb|JAA62529.1| Putative rna polymerase i/iii 16kd polypeptide, partial
[Rhipicephalus pulchellus]
Length = 131
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F ++ +DHTLGN +R ++K+P V F GY PHP E K LRI+T T +AL +
Sbjct: 44 FVMDDQDHTLGNALRYMIMKNPEVRFCGYAIPHPSERKVHLRIETRG-ITAVEALKKGLQ 102
Query: 79 DL--LAE--LSLFEE 89
DL ++E L FEE
Sbjct: 103 DLHKMSEHMLKEFEE 117
>gi|71756079|ref|XP_828954.1| DNA-dependent RNA polymerases [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70834340|gb|EAN79842.1| DNA-dependent RNA polymerases, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261334881|emb|CBH17875.1| DNA-dependent RNA polymerases, putative [Trypanosoma brucei
gambiense DAL972]
Length = 134
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTT 64
+AA T + EDHTLGN +R+ +++DP V AGY PHPLE K L +Q++
Sbjct: 45 SAATVTFSHEDHTLGNPLRHVIMEDPSVTSAGYAIPHPLEAKMQLHVQSS 94
>gi|402468386|gb|EJW03550.1| hypothetical protein EDEG_02134 [Edhazardia aedis USNM 41457]
Length = 161
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D N ++ E HTLGN++ ++LL+D +FA YK PHPLE K ++R+ T+A++
Sbjct: 67 DQTASNTVELEIHGETHTLGNILADRLLQDTRCVFAAYKVPHPLEEKVMVRV-TSAKNCD 125
Query: 70 HDALMNAITDLLAELS 85
+M I D L LS
Sbjct: 126 ---VMELINDALMSLS 138
>gi|335296765|ref|XP_003357859.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Sus scrofa]
Length = 133
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT +
Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 75 NAITDLL 81
+T+L+
Sbjct: 98 RGLTELM 104
>gi|342185977|emb|CCC95462.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
gi|343469253|emb|CCD17721.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
Length = 131
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 11 TKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
T +AA T + EDHTLGN +R L++DP V AGY PHPLE K L +Q+
Sbjct: 41 TGADSAATVTFSHEDHTLGNPLRYVLMQDPDVTSAGYAIPHPLEAKMQLHVQS 93
>gi|321478705|gb|EFX89662.1| hypothetical protein DAPPUDRAFT_40279 [Daphnia pulex]
Length = 86
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E HTLGN IR +LK+P V+F GY PHP E+K LRI+T + S DAL +
Sbjct: 4 FIFKGEGHTLGNAIRTIILKNPDVIFCGYTIPHPSENKLHLRIETKSISAI-DALREGLE 62
Query: 79 DL 80
L
Sbjct: 63 QL 64
>gi|388497488|gb|AFK36810.1| unknown [Lotus japonicus]
Length = 104
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE 66
+ F++ EDHT N IR L +DP V F GY PHP +++ +R+QTT E
Sbjct: 12 STFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGE 61
>gi|88687070|emb|CAJ43896.1| RNA polymerase I subunit RPC19 [Trypanosoma brucei brucei]
Length = 134
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTT 64
+AA T + EDHTLGN +R+ +++DP V AGY PHPLE K L +Q++
Sbjct: 45 SAATVTFSHEDHTLGNPLRHVIMEDPSVTSAGYAIPHPLEAKMQLHVQSS 94
>gi|351725297|ref|NP_001238111.1| uncharacterized protein LOC100500695 [Glycine max]
gi|255630968|gb|ACU15848.1| unknown [Glycine max]
Length = 107
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
+ F++ EDHT N +R L +DP V F GY PHP +++ +R+QTT + + + L +A
Sbjct: 12 STFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRVQTTGDPS-REVLKDA 70
Query: 77 ITDLL 81
DL+
Sbjct: 71 CQDLM 75
>gi|158828223|gb|ABW81101.1| RNApol24 [Cleome spinosa]
Length = 109
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F++ +EDHTL N +R L +DP V F GY PHP + +R+QTT + + L +A
Sbjct: 12 ATFSLTEEDHTLANAVRFVLNQDPRVTFCGYSIPHPSHARVNIRVQTTGDPA-REVLKDA 70
Query: 77 ITDLL 81
DL+
Sbjct: 71 CQDLM 75
>gi|327277356|ref|XP_003223431.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Anolis carolinensis]
Length = 116
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ F ++ EDHTLGN +R ++KDP V F GY HP E K RIQT +
Sbjct: 24 SCVTFVLHNEDHTLGNSLRYMIMKDPEVEFCGYSITHPSESKINFRIQTKGGIPAAEMFQ 83
Query: 75 NAITDLLA 82
+ +L+
Sbjct: 84 KGLEELIG 91
>gi|154311455|ref|XP_001555057.1| hypothetical protein BC1G_06580 [Botryotinia fuckeliana B05.10]
Length = 110
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
AA F KEDHTLGN +R ++K+P V F GY PHP E +RIQT
Sbjct: 61 AASFEFKKEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEELMNIRIQT 108
>gi|389747581|gb|EIM88759.1| RBP11-like subunits of RNA polymerase [Stereum hirsutum FP-91666
SS1]
Length = 101
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+AA F + E HT+GN +R ++K+P+V F GY PHP E+ LRIQ + L
Sbjct: 9 SAATFQIFDESHTMGNALRWIIMKNPNVEFCGYSVPHPSENFIQLRIQMYDGLSALATLE 68
Query: 75 NAITDLLAELSLFEERF 91
A+ DL A + EE +
Sbjct: 69 KALYDLDALYATIEESY 85
>gi|118089544|ref|XP_426271.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Gallus gallus]
Length = 114
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
+ D N F ++ EDHTLGN +R ++K+P V F GY HP E K RIQT
Sbjct: 15 QADGTDGNCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRIQTRGSL 74
Query: 68 TPHDALMNAITDLLA 82
+ + DL+
Sbjct: 75 PAVEPFRKGLNDLMG 89
>gi|430811896|emb|CCJ30651.1| unnamed protein product [Pneumocystis jirovecii]
Length = 124
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+ F + KEDHTL N +R ++K+P V F GY PHP E RIQT + D +
Sbjct: 30 SVTFQIIKEDHTLANALRYIVMKNPDVEFCGYSIPHPSEPTLNFRIQTFRNISAVDVFIK 89
Query: 76 AITDLLA 82
+ DL+A
Sbjct: 90 GLDDLVA 96
>gi|345328398|ref|XP_001514864.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Ornithorhynchus anatinus]
Length = 114
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA---ESTPHD 71
N F ++ EDHTLGN +R ++K+P V F GY HP E K RIQT P
Sbjct: 22 NCVTFVLHDEDHTLGNSLRYMVMKNPEVEFCGYSITHPSESKINFRIQTRGGLPAVEPFR 81
Query: 72 ALMNAITDLL 81
+N +TD+
Sbjct: 82 QGLNELTDVC 91
>gi|342865951|gb|EGU71952.1| hypothetical protein FOXB_17513 [Fusarium oxysporum Fo5176]
Length = 147
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT + T DAL
Sbjct: 58 AASFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTYS-GTAVDALKK 116
Query: 76 AITDLLAELSLFEERF 91
+ D+ + + F
Sbjct: 117 GLVDIQEVCDVVADEF 132
>gi|442747853|gb|JAA66086.1| Putative rna polymerase i/iii 16kd polypeptide [Ixodes ricinus]
Length = 110
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
+ ++ +DHTLGN +R ++K+P V F GY PHP E K LRI+ T + T +AL +
Sbjct: 21 YLLDDQDHTLGNSLRYMIMKNPQVKFCGYAIPHPSERKVHLRIE-TRDITADEALKKGLQ 79
Query: 79 DL 80
DL
Sbjct: 80 DL 81
>gi|388495242|gb|AFK35687.1| unknown [Medicago truncatula]
Length = 115
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
+ F++ EDHT N +R L +DP V F GY PHP E++ +R+QTT + + L +
Sbjct: 12 STFSLVDEDHTFANSVRFTLNQDPRVTFCGYSIPHPSENRVNVRVQTTGDPAS-EVLKDG 70
Query: 77 ITDLL 81
DL+
Sbjct: 71 CQDLM 75
>gi|388580060|gb|EIM20378.1| RBP11-like subunits of RNA polymerase [Wallemia sebi CBS 633.66]
Length = 135
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ A F + EDHT+GN +R L+K+ +V F GY PHP E K LRIQ + DAL
Sbjct: 31 STATFCLFNEDHTIGNALRYILMKNGNVEFCGYSIPHPSEPKVHLRIQMYDNLSAIDALY 90
Query: 75 NAITDLLAELSLFEERF 91
+ DL + + E +
Sbjct: 91 KGLDDLESMFNEIEASY 107
>gi|326924460|ref|XP_003208445.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Meleagris gallopavo]
Length = 134
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
I + + D N F ++ EDHTLGN +R ++K+P V F GY HP E K RI
Sbjct: 7 ISSPLVQADGTDGNCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRI 66
Query: 62 QTTAESTPHDALMNAITDLLA 82
QT + + DL+
Sbjct: 67 QTRGSLPAVEPFRKGLNDLMG 87
>gi|449455052|ref|XP_004145267.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cucumis sativus]
gi|449516242|ref|XP_004165156.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like isoform 1 [Cucumis sativus]
gi|449516244|ref|XP_004165157.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like isoform 2 [Cucumis sativus]
Length = 108
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
+ F++ EDHTL N +R L +DP V F GY PHP +++ +R+QTT + + L +A
Sbjct: 12 STFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDA 70
Query: 77 ITDLL 81
+L+
Sbjct: 71 CQNLM 75
>gi|330834285|ref|YP_004409013.1| DNA-directed RNA polymerase, subunit L [Metallosphaera cuprina
Ar-4]
gi|329566424|gb|AEB94529.1| DNA-directed RNA polymerase, subunit L [Metallosphaera cuprina
Ar-4]
Length = 90
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 9 LDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAEST 68
++ K N F + EDHTLGN++ + + P V+ + Y PHPL+ + I++++T +
Sbjct: 5 VEKKDDNYVEFRIQGEDHTLGNLVAATMRRVPGVILSTYYLPHPLKDELIIKVKTDGSIS 64
Query: 69 PHDALMNAI 77
P DAL AI
Sbjct: 65 PVDALKKAI 73
>gi|428179316|gb|EKX48188.1| DNA-directed RNA polymerase subunit [Guillardia theta CCMP2712]
Length = 148
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE 66
F + EDHTLGN +R + ++P+V F GY PHPLE K L IQT E
Sbjct: 64 FVMRNEDHTLGNALRIVISRNPNVTFCGYSVPHPLESKMHLHIQTKGE 111
>gi|123508377|ref|XP_001329625.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121912671|gb|EAY17490.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 124
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 5 IIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTT 64
++KE K N FTV KEDHTLGN++ +QLL + +LFAGY+ HP + +R++ +
Sbjct: 26 VVKE--EKSDNCYTFTVQKEDHTLGNLLTDQLLTENRILFAGYRIEHPTKDLIKIRVKAS 83
Query: 65 AEST-PHDALMNAITDLLAELSLFEERF 91
P + + AI L +++ + F
Sbjct: 84 QNVNHPKELIDPAIEALKTKIAGLQSSF 111
>gi|46125119|ref|XP_387113.1| hypothetical protein FG06937.1 [Gibberella zeae PH-1]
Length = 146
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT + T DAL
Sbjct: 57 AASFEFTDEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEPKMNIRIQTYS-GTAVDALKK 115
Query: 76 AITDLLAELSLFEERF 91
+ D+ + + F
Sbjct: 116 GLVDIQEVCDVVADEF 131
>gi|325186683|emb|CCA21232.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 897
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
+ + EDHTLGN +R L+++P V F GY PHP E K LR+QT + + L +
Sbjct: 36 YVFHDEDHTLGNALRYILMRNPKVEFCGYTIPHPSEPKMHLRLQTQKDVASDEVLREGLQ 95
Query: 79 DL 80
DL
Sbjct: 96 DL 97
>gi|154414194|ref|XP_001580125.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121914339|gb|EAY19139.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 101
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
+++ D + P++ E +T+GN +R +L++P V F GY PHP E K LR+Q
Sbjct: 5 ELVITYDDEKPSSGSMLFTGETYTMGNALRQTILQNPKVNFCGYTVPHPAETKVALRVQA 64
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ D +++ I+D + E F
Sbjct: 65 DDDEKITDIVLSGISDFKQWCNNTETEF 92
>gi|355712710|gb|AES04440.1| polymerase I polypeptide D, 16kDa [Mustela putorius furo]
Length = 90
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 86
>gi|357461253|ref|XP_003600908.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
gi|355489956|gb|AES71159.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
Length = 218
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
+ F++ EDHT N +R L +DP V F GY PHP E++ +R+QTT + + L +
Sbjct: 115 STFSLVNEDHTFSNSVRFTLNQDPRVTFCGYSIPHPSENRVNVRVQTTGDPAS-EVLKDG 173
Query: 77 ITDLL 81
DL+
Sbjct: 174 CQDLM 178
>gi|300175414|emb|CBK20725.2| unnamed protein product [Blastocystis hominis]
Length = 100
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
E + + F E HTLGN IR +++ V F GY PHP+E K LR+QTT E
Sbjct: 13 EYGVGINTSRTFVFYNEGHTLGNPIRTIMMQQEGVEFCGYSVPHPVEAKMHLRVQTTGE- 71
Query: 68 TPHDALMNAITDLLAELSLFE 88
NA L+ L FE
Sbjct: 72 -------NATEALIKGLRTFE 85
>gi|241121691|ref|XP_002403305.1| RNA polymerase I/III 16Kd polypeptide, putative [Ixodes
scapularis]
gi|215493414|gb|EEC03055.1| RNA polymerase I/III 16Kd polypeptide, putative [Ixodes
scapularis]
Length = 109
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
+ ++ +DHTLGN +R ++K+P V F GY PHP E K LRI+T + T +AL +
Sbjct: 20 YLLDDQDHTLGNSLRYMIMKNPQVKFCGYAIPHPSERKVHLRIETR-DITADEALKKGLQ 78
Query: 79 DL 80
DL
Sbjct: 79 DL 80
>gi|301783617|ref|XP_002927225.1| PREDICTED: hypothetical protein LOC100471798 [Ailuropoda
melanoleuca]
Length = 324
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 233 FVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 277
>gi|340522545|gb|EGR52778.1| predicted protein [Trichoderma reesei QM6a]
Length = 151
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT + + +AL
Sbjct: 62 AASFEFTDEGHTLGNALRYVIMKNPDVEFCAYSIPHPSEPKMNIRIQTY-DGSAVNALKK 120
Query: 76 AITDLLAELSLFEERF 91
++DL + E F
Sbjct: 121 GLSDLQDVCDVVAEEF 136
>gi|383872945|ref|NP_001244388.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Macaca
mulatta]
gi|355700890|gb|EHH28911.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Macaca
mulatta]
gi|380787579|gb|AFE65665.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
gi|383413361|gb|AFH29894.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
gi|384942556|gb|AFI34883.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Macaca mulatta]
Length = 133
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 86
>gi|449281716|gb|EMC88730.1| DNA-directed RNA polymerases I and III subunit RPAC2, partial
[Columba livia]
Length = 90
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
+ D N F ++ EDHTLGN +R ++K+P V F GY HP E K RIQT
Sbjct: 3 QADGTDGNCVTFVLHDEDHTLGNSLRYMVMKNPDVEFCGYCITHPSESKINFRIQTRGTL 62
Query: 68 TPHDALMNAITDLLA----ELSLFEERF 91
+ + DL+ L+ FE R
Sbjct: 63 PAVEPFRKGLNDLMGVCQHVLNTFEVRL 90
>gi|444518031|gb|ELV11918.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Tupaia
chinensis]
Length = 133
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 86
>gi|429855586|gb|ELA30535.1| DNA-directed RNA polymerase i and iii 14 kda polypeptide
[Colletotrichum gloeosporioides Nara gc5]
Length = 138
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+K L +AA F E HTLGN +R ++K+P V F Y PHP E K LRIQT
Sbjct: 44 VKILPGSTDSAASFEFIDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNLRIQTY- 102
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+ T AL + DL A E F
Sbjct: 103 DGTAVAALQQGLKDLQALSDTVAEEF 128
>gi|345790282|ref|XP_003433343.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Canis lupus familiaris]
Length = 133
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 86
>gi|449459084|ref|XP_004147276.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cucumis sativus]
Length = 104
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
+ F++ EDHTL N +R L +DP V F GY PHP +++ +R+QTT + + L +A
Sbjct: 12 STFSMADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPA-REVLKDA 70
Query: 77 ITDLL 81
+L+
Sbjct: 71 CQNLM 75
>gi|145541556|ref|XP_001456466.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424278|emb|CAK89069.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P F EDHTLGN +R L P+V F GY PHP E+K +R+QT E+ + +
Sbjct: 39 PFNGTFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENKMNMRLQTVNET--KEKI 96
Query: 74 MNAITDLLAELS-LFEERF 91
MN L+++ + E++F
Sbjct: 97 MNDGLKCLSQICDIIEDKF 115
>gi|296203610|ref|XP_002748958.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Callithrix jacchus]
Length = 133
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 86
>gi|432880437|ref|XP_004073697.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Oryzias latipes]
Length = 142
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
+ D + F ++ EDHTLGN +R ++K+P V F GY HP E K RIQT
Sbjct: 15 QADGAQEDCVTFVMHDEDHTLGNSLRYMIMKNPDVDFCGYTITHPSESKINFRIQTRGGV 74
Query: 68 TPHDALMNAITDL 80
+ L ++DL
Sbjct: 75 PAVEPLQKGLSDL 87
>gi|431920979|gb|ELK18748.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Pteropus
alecto]
Length = 123
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 29 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 76
>gi|68071445|ref|XP_677636.1| RNA polymerase small subunit [Plasmodium berghei strain ANKA]
gi|56497829|emb|CAH98380.1| RNA polymerase small subunit, putative [Plasmodium berghei]
Length = 96
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F EDHTLGN +R LL+ + FAGY PHP + + LRIQTT + + L ++
Sbjct: 16 ATFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTTGKPAI-NILKDS 74
Query: 77 ITDLLAELSLFEERF 91
+ DL ++ E+F
Sbjct: 75 LDDLSNICTILLEKF 89
>gi|7705740|ref|NP_057056.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1
[Homo sapiens]
gi|410047658|ref|XP_003952423.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Pan troglodytes]
gi|426375009|ref|XP_004054344.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Gorilla gorilla gorilla]
gi|441624152|ref|XP_004088972.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Nomascus leucogenys]
gi|11387119|sp|Q9Y2S0.1|RPAC2_HUMAN RecName: Full=DNA-directed RNA polymerases I and III subunit
RPAC2; Short=RNA polymerases I and III subunit AC2;
AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D; AltName: Full=RNA polymerase I
16 kDa subunit; Short=RPA16; AltName: Full=RPC16;
AltName: Full=hRPA19
gi|4689136|gb|AAD27777.1|AF077044_1 RNA polymerase I 16 kDa subunit [Homo sapiens]
gi|12654143|gb|AAH00889.1| Polymerase (RNA) I polypeptide D, 16kDa [Homo sapiens]
gi|119628820|gb|EAX08415.1| hCG2020048, isoform CRA_a [Homo sapiens]
gi|208968663|dbj|BAG74170.1| polymerase (RNA) I polypeptide D, 16kDa [synthetic construct]
gi|410217740|gb|JAA06089.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
gi|410304014|gb|JAA30607.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
gi|410334477|gb|JAA36185.1| polymerase (RNA) I polypeptide D, 16kDa [Pan troglodytes]
Length = 133
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 86
>gi|354468533|ref|XP_003496707.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Cricetulus griseus]
Length = 133
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 86
>gi|145535985|ref|XP_001453720.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421453|emb|CAK86323.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P F EDHTLGN +R L P+V F GY PHP E+K +R+QT E+ + +
Sbjct: 39 PFNGTFVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENKMNMRLQTVNET--KEKV 96
Query: 74 MNAITDLLAELS-LFEERF 91
MN L+++ + E++F
Sbjct: 97 MNDGLKCLSQICDIIEDKF 115
>gi|291410364|ref|XP_002721466.1| PREDICTED: polymerase (RNA) I polypeptide D [Oryctolagus
cuniculus]
Length = 133
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 86
>gi|432117377|gb|ELK37721.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Myotis
davidii]
Length = 123
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 29 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 76
>gi|281344161|gb|EFB19745.1| hypothetical protein PANDA_016989 [Ailuropoda melanoleuca]
Length = 125
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 31 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 78
>gi|212546345|ref|XP_002153326.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
gi|210064846|gb|EEA18941.1| DNA-directed RNA polymerase I and III 14 KDA polypeptide
[Talaromyces marneffei ATCC 18224]
Length = 100
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%)
Query: 9 LDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
L AA F +E HTLGN +R ++K+P V F GY PHP E K LRIQT
Sbjct: 36 LSGATDTAASFQFKEEGHTLGNALRYVIMKNPKVEFCGYTIPHPSEAKMNLRIQT 90
>gi|6677791|ref|NP_033113.1| DNA-directed RNA polymerases I and III subunit RPAC2 isoform 1 [Mus
musculus]
gi|11387094|sp|P97304.1|RPAC2_MOUSE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D; AltName: Full=RNA polymerase I 16 kDa
subunit; Short=RPA16
gi|1778684|dbj|BAA13139.1| RPA16 [Mus musculus]
gi|12833069|dbj|BAB22376.1| unnamed protein product [Mus musculus]
gi|148673878|gb|EDL05825.1| RNA polymerase 1-3, isoform CRA_a [Mus musculus]
Length = 133
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT +
Sbjct: 38 QCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 75 NAITDLL 81
+ +LL
Sbjct: 98 KGLNELL 104
>gi|410947157|ref|XP_003980319.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
[Felis catus]
Length = 116
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 22 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 69
>gi|340503209|gb|EGR29821.1| hypothetical protein IMG5_148050 [Ichthyophthirius multifiliis]
Length = 143
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ + + K +A + EDHTLGN +R L+K V F GY PHP E++ LR+QT
Sbjct: 43 KLVIDQNEKDKTSATYIFYDEDHTLGNALRYVLVKRKDVEFCGYTIPHPSENRLNLRLQT 102
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+++++ ++ L ++ L + ++F
Sbjct: 103 SSKNS-NEVLKESLDSLAGLCDVLNDKF 129
>gi|338715260|ref|XP_003363239.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I
and III subunit RPAC2-like [Equus caballus]
Length = 126
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 32 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 79
>gi|149034849|gb|EDL89569.1| rCG42593, isoform CRA_b [Rattus norvegicus]
Length = 133
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT +
Sbjct: 39 CVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQK 98
Query: 76 AITDLL 81
+ +LL
Sbjct: 99 GLNELL 104
>gi|344237268|gb|EGV93371.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Cricetulus
griseus]
Length = 116
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 22 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 69
>gi|310789432|gb|EFQ24965.1| hypothetical protein GLRG_00109 [Glomerella graminicola M1.001]
Length = 141
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+K L AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT
Sbjct: 47 VKILPGSTDTAASFEFIDEGHTLGNALRYIIMKNPDVEFCAYAIPHPSEAKMNIRIQTY- 105
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+ T AL + DL A E F
Sbjct: 106 DGTAVSALQKGLKDLQALSDTVAEEF 131
>gi|219119219|ref|XP_002180374.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407847|gb|EEC47782.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES--------TPH 70
F + EDHTLGN +R+ L+++ + FAGY PHP E +R+QT A + T
Sbjct: 5 FCIGDEDHTLGNAVRHVLIRNNSIGFAGYSVPHPSEPVVQIRVQTVAPAGSRGQQPPTAT 64
Query: 71 DALMNAITDLLAELSLFEERF 91
AL A L + + ER
Sbjct: 65 GALKTACQTLYDQCDIVLERL 85
>gi|196012371|ref|XP_002116048.1| hypothetical protein TRIADDRAFT_30263 [Trichoplax adhaerens]
gi|190581371|gb|EDV21448.1| hypothetical protein TRIADDRAFT_30263 [Trichoplax adhaerens]
Length = 92
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ F ++ E+HTLGN +R ++K+P GY PHP +HK LRI+T E +
Sbjct: 9 DCQTFVLHGENHTLGNAVRYLIMKNPETKLCGYSVPHPSQHKINLRIETNNEKDAIEVFR 68
Query: 75 NAITDL 80
+ DL
Sbjct: 69 TGLQDL 74
>gi|51468043|ref|NP_001003888.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Danio rerio]
gi|82173244|sp|Q6DRI4.1|RPAC2_DANRE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC2;
Short=RNA polymerases I and III subunit AC2; AltName:
Full=AC19; AltName: Full=DNA-directed RNA polymerase I
subunit D
gi|49619017|gb|AAT68093.1| RNA polymerase I polypeptide D [Danio rerio]
gi|133777915|gb|AAI15139.1| Zgc:136449 protein [Danio rerio]
Length = 112
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT---TAE 66
D F +N+EDHTLGN +R ++K V F GY HP E K RIQT
Sbjct: 16 DGADEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPA 75
Query: 67 STPHDALMNAITDLLAE-LSLFEERF 91
S P +N +TD+ L FE R
Sbjct: 76 SEPLRNGLNNLTDVCKHVLQTFEARM 101
>gi|224006698|ref|XP_002292309.1| small RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220971951|gb|EED90284.1| small RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 83
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES-TPHDALMNAI 77
F + EDHTLGN +R+ L+ D V FAGY PHP E LR+QT + T +AL A
Sbjct: 5 FVLGDEDHTLGNALRHVLINDARVDFAGYCVPHPSEPVVHLRVQTNEKPLTAIEALKEAC 64
Query: 78 TDLLAELSLFEERF 91
+ L + F E+
Sbjct: 65 STLSKQCDFFLEQL 78
>gi|395850165|ref|XP_003797668.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2
isoform 1 [Otolemur garnettii]
Length = 133
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F ++ EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 39 CVTFVLHDEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 86
>gi|357502661|ref|XP_003621619.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
gi|355496634|gb|AES77837.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Medicago
truncatula]
Length = 115
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
+ F++ EDHT N +R L +DP V F GY PHP E++ +R+QTT + + L +
Sbjct: 12 STFSLVDEDHTFANSVRFILNQDPRVTFCGYSIPHPSENRVNVRVQTTGDPAS-EVLKDG 70
Query: 77 ITDLL 81
DL+
Sbjct: 71 CQDLM 75
>gi|295668907|ref|XP_002795002.1| predicted protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285695|gb|EEH41261.1| predicted protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 180
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 16 AAIFTVNKEDHTLGNMIR------------NQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
A F ++EDHTLGN +R + +++ P V F GY PHP E K LRIQT
Sbjct: 81 AVSFQFDREDHTLGNALRYVIMKNPKFLTYSSIIRSPEVEFCGYTMPHPSEAKMNLRIQT 140
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+T L DL+ + E F
Sbjct: 141 YETTTAIAVLEKGFDDLMDLCDVVTETF 168
>gi|393243778|gb|EJD51292.1| RBP11-like subunits of RNA polymerase [Auricularia delicata
TFB-10046 SS5]
Length = 110
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+AA + ++ E HT+GN +R L+K+P V F GY PHP E LRIQ + AL
Sbjct: 19 SAATYCLHDESHTIGNALRWMLMKNPKVEFCGYSAPHPSEPVIHLRIQMYDRHSSLTALT 78
Query: 75 NAITDL 80
A+ +L
Sbjct: 79 EALDNL 84
>gi|389860778|ref|YP_006363018.1| DNA-directed RNA polymerase subunit L [Thermogladius
cellulolyticus 1633]
gi|388525682|gb|AFK50880.1| DNA-directed RNA polymerase subunit L [Thermogladius
cellulolyticus 1633]
Length = 91
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
N + + EDHTLGN++ + L DP V ++ Y+ PHPL+ + L + T P L+
Sbjct: 11 NELVIEIQGEDHTLGNLLAKEALLDPRVEYSAYRIPHPLQERMELTLVTKQGEDPLKVLV 70
Query: 75 NAITDLLAEL----SLFEERF 91
I L+ ++ SL EE+
Sbjct: 71 EIIDKLVGDIRAFRSLVEEKL 91
>gi|312070093|ref|XP_003137987.1| hypothetical protein LOAG_02401 [Loa loa]
gi|307766855|gb|EFO26089.1| hypothetical protein LOAG_02401 [Loa loa]
Length = 113
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P+ + +EDHT+GN +++ L K V F GY PHPLE K ++R+QT D L
Sbjct: 23 PSNLTVILYEEDHTIGNSLKHILCKMRDVEFCGYNVPHPLEDKILIRLQTKRGVPAADVL 82
Query: 74 MNAITDLLAELSLFEERF 91
M +L ++F
Sbjct: 83 MKGFEELECIFGSIRQKF 100
>gi|294942414|ref|XP_002783512.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239896009|gb|EER15308.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 256
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
+ + EDHTLGN +R L K+P V FAGY PHP E +R+QT T ++++
Sbjct: 8 CGTYQLKNEDHTLGNSVRYVLAKNPKVDFAGYSVPHPNEPFVNIRVQTYPGMTADESMIW 67
Query: 76 AITDL 80
A+ +L
Sbjct: 68 ALEEL 72
>gi|449472913|ref|XP_004153732.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like, partial [Cucumis sativus]
Length = 59
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTT 64
+ F++ EDHTL N +R L +DP V F GY PHP +++ +R+QTT
Sbjct: 12 STFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTT 59
>gi|356573936|ref|XP_003555110.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Glycine max]
Length = 106
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
+ F++ EDHT N +R L +DP V F GY PHP +++ +R+QTT + + L +
Sbjct: 12 STFSLVDEDHTFANSVRFTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDP-AREVLKDG 70
Query: 77 ITDLL 81
DL+
Sbjct: 71 CQDLM 75
>gi|392562075|gb|EIW55256.1| RBP11-like subunits of RNA polymerase [Trametes versicolor
FP-101664 SS1]
Length = 111
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+AA + ++ E HT+GN +R L+K+ V F GY PHP E+ +RIQ + AL+
Sbjct: 19 SAATYQIHDESHTIGNALRWMLMKNEKVEFCGYSVPHPSENHINMRIQMYDGLSSLTALI 78
Query: 75 NAITDL 80
A+ DL
Sbjct: 79 QALKDL 84
>gi|126308959|ref|XP_001380567.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Monodelphis domestica]
Length = 134
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
N F + EDHTLGN +R ++K+P V F GY HP E K RIQT
Sbjct: 42 NCVTFVLYDEDHTLGNSLRYMIMKNPEVEFCGYSITHPSESKINFRIQTKG 92
>gi|395537015|ref|XP_003770503.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Sarcophilus harrisii]
Length = 114
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
N F + EDHTLGN +R ++K+P V F GY HP E K RIQT
Sbjct: 22 NCVTFVLYDEDHTLGNSLRYMIMKNPEVEFCGYSITHPSESKINFRIQT 70
>gi|402588033|gb|EJW81967.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein,
partial [Wuchereria bancrofti]
Length = 110
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P+ + +EDHT+GN +++ L K V F GY PHPLE K ++R+QT + + L
Sbjct: 20 PSNLTVILYEEDHTIGNSLKHVLCKMRDVEFCGYNVPHPLEDKILIRLQTKRGVSAANTL 79
Query: 74 MNAITDLLAELSLFEERF 91
M +L + + ++F
Sbjct: 80 MKGFEELESIFASIRQKF 97
>gi|146304610|ref|YP_001191926.1| DNA-directed RNA polymerase L [Metallosphaera sedula DSM 5348]
gi|172046935|sp|A4YHV0.1|RPOL_METS5 RecName: Full=DNA-directed RNA polymerase subunit L
gi|145702860|gb|ABP96002.1| DNA-directed RNA polymerase, subunit L [Metallosphaera sedula DSM
5348]
Length = 90
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDL 80
+ EDHTLGN+I +L V+ A Y PHPL+ + +++I+T +P +AL AI D+
Sbjct: 17 IQGEDHTLGNLIAGRLRSVKGVILATYYLPHPLKDELVIKIKTDGTISPREALNRAIEDV 76
>gi|170595751|ref|XP_001902505.1| Probable DNA-directed RNA polymerases I/III 16 kDa polypeptide,
putative [Brugia malayi]
gi|158589782|gb|EDP28642.1| Probable DNA-directed RNA polymerases I/III 16 kDa polypeptide,
putative [Brugia malayi]
Length = 113
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P+ + +EDHT+GN +++ L K V F GY PHPLE K ++R+QT + L
Sbjct: 23 PSNLTVILYEEDHTIGNSLKHVLCKMRDVEFCGYNVPHPLEDKILIRLQTKRGVSAASML 82
Query: 74 MNAITDLLAELSLFEERF 91
M +L + ++F
Sbjct: 83 MKGFEELECIFASIRQKF 100
>gi|380486342|emb|CCF38765.1| hypothetical protein CH063_09777 [Colletotrichum higginsianum]
Length = 140
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+K L AA F E HTLGN +R ++K+P V F Y PHP E K +RIQT
Sbjct: 46 VKILPGSTDTAASFEFIDEGHTLGNALRFIIMKNPDVEFCAYAIPHPSEAKMNIRIQTY- 104
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+ T AL + DL A E F
Sbjct: 105 DGTAVAALQKGLKDLQALSDTVAEEF 130
>gi|124808476|ref|XP_001348323.1| RNA polymerase small subunit, putative [Plasmodium falciparum
3D7]
gi|23497215|gb|AAN36762.1|AE014818_27 RNA polymerase small subunit, putative [Plasmodium falciparum
3D7]
Length = 96
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A F EDHTLGN +R LL+ V FAGY PHP + + +RIQTT + D L +
Sbjct: 16 ATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQPEINVRIQTTGKPAI-DILKES 74
Query: 77 ITDL 80
+ DL
Sbjct: 75 LDDL 78
>gi|391334302|ref|XP_003741544.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Metaseiulus occidentalis]
Length = 104
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F + EDHTLGN +R ++K+P V F GY PHP E +RIQ S DAL
Sbjct: 18 FLLENEDHTLGNALRCMIMKNPAVQFCGYAIPHPSERTIHVRIQMINGSAI-DALEKGFQ 76
Query: 79 DL 80
DL
Sbjct: 77 DL 78
>gi|341877867|gb|EGT33802.1| hypothetical protein CAEBREN_16714 [Caenorhabditis brenneri]
Length = 138
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P+ + +EDHT+GN I++ L + V F GY PHPLE K + R+QT + L
Sbjct: 52 PSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTRDGINALEVL 111
Query: 74 MNAITDLLAELSLFEERF 91
M A + S E+F
Sbjct: 112 MKAFESVEKIFSTIREKF 129
>gi|302678017|ref|XP_003028691.1| hypothetical protein SCHCODRAFT_237070 [Schizophyllum commune
H4-8]
gi|300102380|gb|EFI93788.1| hypothetical protein SCHCODRAFT_237070 [Schizophyllum commune
H4-8]
Length = 112
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
AA + + E HTLGN +R ++K+P+V F GY PHP E+ +RIQ
Sbjct: 21 AATYQIYDESHTLGNALRWMIMKNPNVEFCGYSAPHPSENVINVRIQ 67
>gi|148232551|ref|NP_001088155.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Xenopus
laevis]
gi|82180681|sp|Q5XK67.1|RPAC2_XENLA RecName: Full=DNA-directed RNA polymerases I and III subunit
RPAC2; Short=RNA polymerases I and III subunit AC2;
AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
gi|52789423|gb|AAH83053.1| LOC494863 protein [Xenopus laevis]
Length = 114
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
+ F +++EDHTLGN +R ++K+P V F GY HP E K RIQT
Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQT 70
>gi|410913427|ref|XP_003970190.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Takifugu rubripes]
Length = 122
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
+ D F ++ EDHTLGN +R ++K+ V F GY HP E+K RIQT
Sbjct: 15 QADGADEGCVTFVMHDEDHTLGNSLRYMVMKNEDVEFCGYTITHPSENKINFRIQTRGGV 74
Query: 68 TPHDALMNAITDL 80
+ L ++DL
Sbjct: 75 PAAEVLRKGLSDL 87
>gi|82540957|ref|XP_724755.1| RNA polymerase L [Plasmodium yoelii yoelii 17XNL]
gi|23479513|gb|EAA16320.1| RNA polymerases L / 13 to 16 kDa subunit [Plasmodium yoelii
yoelii]
Length = 92
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
A F EDHTLGN +R LL+ + FAGY PHP + + LRIQTT
Sbjct: 16 ATFCFENEDHTLGNCLRCILLQKEGIEFAGYTVPHPTQAEINLRIQTTG 64
>gi|70606015|ref|YP_254885.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
DSM 639]
gi|449066211|ref|YP_007433293.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
N8]
gi|449068487|ref|YP_007435568.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
Ron12/I]
gi|1173166|sp|P46217.1|RPOL_SULAC RecName: Full=DNA-directed RNA polymerase subunit L
gi|912481|emb|CAA50072.1| RNA polymerase subunit L [Sulfolobus acidocaldarius]
gi|68566663|gb|AAY79592.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
DSM 639]
gi|449034719|gb|AGE70145.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
N8]
gi|449036995|gb|AGE72420.1| DNA-directed RNA polymerase subunit L [Sulfolobus acidocaldarius
Ron12/I]
Length = 90
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
++ E+HT+GN+++ LLK P V FA Y PHPL ++I T + +AL+ AI
Sbjct: 17 IDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREALIKAI 73
>gi|118790581|ref|XP_318678.2| AGAP009644-PA [Anopheles gambiae str. PEST]
gi|116118014|gb|EAA14103.3| AGAP009644-PA [Anopheles gambiae str. PEST]
Length = 105
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
++ F E HTLGN++++ + K P V F GY PHP E+K RIQ D L
Sbjct: 16 SSRTFVFEDEGHTLGNVLKSIICKYPDVNFCGYTVPHPAENKMHFRIQAAKSVRAIDVLR 75
Query: 75 NAITDL 80
+ DL
Sbjct: 76 RGLEDL 81
>gi|401425126|ref|XP_003877048.1| DNA-directed RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493292|emb|CBZ28577.1| DNA-directed RNA polymerase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 137
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTT 64
+ A+ T + EDHTLGN +R+ L+++ V AGY PHPLE K +L +Q +
Sbjct: 46 STAVVTFSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQAS 95
>gi|407044128|gb|EKE42390.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Entamoeba nuttalli P19]
Length = 85
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT--TAESTPHDA 72
N +T+ EDHT N +R+ + P GY PHP + K + RIQT +++ TP D
Sbjct: 3 NGISYTIEGEDHTFANPLRHVIANLPDTDLCGYSIPHPSDTKVVFRIQTQKSSKKTPFDV 62
Query: 73 LMNAITDLLAELSLFEERF 91
+ + +L+ ++ E +
Sbjct: 63 MEDGCKELIRQMDELNELY 81
>gi|301615272|ref|XP_002937095.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Xenopus (Silurana) tropicalis]
Length = 114
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
+ F +++EDHTLGN +R ++K+P + F GY HP E K RIQT
Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPDIEFCGYSITHPSETKINFRIQT 70
>gi|403285030|ref|XP_003933845.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Saimiri boliviensis boliviensis]
Length = 134
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
F ++KEDHTLGN + L+K+P V F GY P E K LRIQT
Sbjct: 40 CVTFVLHKEDHTLGNSLCYMLMKNPEVEFCGYTTTDPSESKINLRIQTQG 89
>gi|154340595|ref|XP_001566254.1| DNA-directed RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063573|emb|CAM39755.1| DNA-directed RNA polymerase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 137
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 11 TKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTT 64
T + A+ T + EDHTLGN +R+ L+++ V AGY PHPLE K +L +Q +
Sbjct: 42 TDSESTAVVTFSHEDHTLGNPLRHVLMQNVAVTSAGYAIPHPLEPKMLLHVQAS 95
>gi|146092259|ref|XP_001470246.1| DNA-directed RNA polymerase-like protein [Leishmania infantum
JPCM5]
gi|398018276|ref|XP_003862319.1| DNA-directed RNA polymerase-like protein [Leishmania donovani]
gi|134085040|emb|CAM69441.1| DNA-directed RNA polymerase-like protein [Leishmania infantum
JPCM5]
gi|322500548|emb|CBZ35625.1| DNA-directed RNA polymerase-like protein [Leishmania donovani]
Length = 137
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTT 64
+ A+ T + EDHTLGN +R+ L+++ V AGY PHPLE K +L +Q +
Sbjct: 46 STAVVTFSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQAS 95
>gi|242025436|ref|XP_002433130.1| DNA-directed RNA polymerase I 16 kD polypeptide, putative
[Pediculus humanus corporis]
gi|212518671|gb|EEB20392.1| DNA-directed RNA polymerase I 16 kD polypeptide, putative
[Pediculus humanus corporis]
Length = 103
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F + E HTLGN +R+ + + V F GY PHP E K RIQT+ + D L +T
Sbjct: 19 FVFDGEGHTLGNALRSVISRYSEVTFCGYTIPHPSEEKINFRIQTSG-ARAVDILKKGLT 77
Query: 79 DL 80
DL
Sbjct: 78 DL 79
>gi|449703286|gb|EMD43765.1| DNA-directed RNA polymerase I and III subunit Rpc19, putative
[Entamoeba histolytica KU27]
Length = 85
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES--TPHDA 72
N +T+ EDHT N +R+ + P GY PHP + K + RIQT S TP D
Sbjct: 3 NGISYTIEGEDHTFANPLRHVIANLPDTDLCGYSIPHPSDTKVVFRIQTQKSSNKTPFDV 62
Query: 73 LMNAITDLLAELSLFEERF 91
+ + +L+ ++ E +
Sbjct: 63 MEDGCKELIRQMDELNELY 81
>gi|346971331|gb|EGY14783.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
dahliae VdLs.17]
Length = 146
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F Y PHP E +RIQT + T AL
Sbjct: 58 AASFEFKAEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEDLMNIRIQTY-DGTAVSALSK 116
Query: 76 AITDLLAELSLFEERF 91
+ DL + + F
Sbjct: 117 GLKDLQGLCDVMTDEF 132
>gi|302410981|ref|XP_003003324.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
albo-atrum VaMs.102]
gi|261358348|gb|EEY20776.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Verticillium
albo-atrum VaMs.102]
Length = 146
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
AA F E HTLGN +R ++K+P V F Y PHP E +RIQT + T AL
Sbjct: 58 AASFEFKAEGHTLGNALRYIIMKNPDVEFCAYSIPHPSEDLMNIRIQTY-DGTAVSALSK 116
Query: 76 AITDLLAELSLFEERF 91
+ DL + + F
Sbjct: 117 GLKDLQGLCDVMTDEF 132
>gi|225716362|gb|ACO14027.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Esox lucius]
Length = 114
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
+ D F +++EDHTLGN +R ++K+ V F GY HP E K RIQT
Sbjct: 16 QADGADEGCVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGAV 75
Query: 68 TPHDALMNAITDL--LAE--LSLFEER 90
+ L +T+L L + L+ FE+R
Sbjct: 76 PAVEPLRRGLTELTDLCQHVLNTFEKR 102
>gi|296241786|ref|YP_003649273.1| RNA polymerase dimerization [Thermosphaera aggregans DSM 11486]
gi|296094370|gb|ADG90321.1| RNA polymerase dimerization [Thermosphaera aggregans DSM 11486]
Length = 92
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPL--EHKFILRIQTTA 65
E+ TK N + EDHTLGN++ + L+ P V++A Y+ PHPL E +F++ +Q
Sbjct: 4 EVLTKTSNHLAIKIKGEDHTLGNLLMKEALRHPKVVYASYRVPHPLREEIEFVITVQEGT 63
Query: 66 ESTPHDALMNAITDLLAELSLF 87
+ + L + + ELS F
Sbjct: 64 DVG--EVLREIVGGIKRELSDF 83
>gi|395841302|ref|XP_003793484.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Otolemur garnettii]
Length = 134
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F ++ +DHTLGN +R ++K+P V F GY HP E K L IQT + L +
Sbjct: 42 FVLHNKDHTLGNSLRYMIMKNPEVEFCGYTMAHPSESKINLHIQTQGALPAVEPLQRGLN 101
Query: 79 DLL 81
+L+
Sbjct: 102 ELM 104
>gi|347522733|ref|YP_004780303.1| RNA polymerase dimerization [Pyrolobus fumarii 1A]
gi|343459615|gb|AEM38051.1| RNA polymerase dimerization [Pyrolobus fumarii 1A]
Length = 95
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAE 83
EDHT+ N+I ++ PHV +A Y+ HPL ++ I T +P D L N + +++
Sbjct: 21 EDHTMANLIVKLAIRKPHVTYAAYRIDHPLVDDPVVVIATDGTVSPIDVLENVLNEIVKL 80
Query: 84 LSLFEERF 91
F+E+F
Sbjct: 81 CDEFKEKF 88
>gi|374634177|ref|ZP_09706542.1| DNA-directed RNA polymerase, subunit L [Metallosphaera
yellowstonensis MK1]
gi|373523965|gb|EHP68885.1| DNA-directed RNA polymerase, subunit L [Metallosphaera
yellowstonensis MK1]
Length = 90
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 9 LDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAEST 68
+D + N + EDHTLGN++ L + V +A Y QPHPL + +L+I T +
Sbjct: 5 VDKRSENYLELRLAGEDHTLGNLLAGALREVKGVSYASYYQPHPLNDEIVLKIMTDGTIS 64
Query: 69 PHDALMNAI 77
P +AL A+
Sbjct: 65 PLEALNKAL 73
>gi|218884727|ref|YP_002429109.1| DNA-directed RNA polymerase subunit L [Desulfurococcus
kamchatkensis 1221n]
gi|218766343|gb|ACL11742.1| DNA-directed RNA polymerase, subunit L [Desulfurococcus
kamchatkensis 1221n]
Length = 93
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 18 IFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKF----ILRIQTTAESTPHDAL 73
+ + EDHTLGN++ + ++ P V +A Y+ PHPL++ F I++ T ES D +
Sbjct: 14 VLEIYDEDHTLGNLLAKEAIRHPGVEYAAYRVPHPLKNMFEFTIIVKPGYTVESILRD-I 72
Query: 74 MNAITDLLAEL-SLFEER 90
+N + + LAEL L EE+
Sbjct: 73 VNGLKNSLAELRRLVEEK 90
>gi|307110082|gb|EFN58319.1| hypothetical protein CHLNCDRAFT_142343 [Chlorella variabilis]
Length = 139
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
++K ++ + + E HTLGN +R+ + PHV A Y Q HP ++ ++R QT+ T
Sbjct: 14 ESKEDSSIVLALGDETHTLGNALRDVMWAHPHVQLASYTQEHPSLNEIVVRCQTSGAVTA 73
Query: 70 HDALMNAI 77
A+ A+
Sbjct: 74 EQAVAEAL 81
>gi|323447577|gb|EGB03493.1| hypothetical protein AURANDRAFT_17769 [Aureococcus
anophagefferens]
Length = 74
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F EDHTLGN +R+ L++ FAGY PHP E +R+QTT P A+M+
Sbjct: 2 FVFRDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTTGR--PALAVMD--- 56
Query: 79 DLLAELS 85
D LA+LS
Sbjct: 57 DGLAQLS 63
>gi|429964494|gb|ELA46492.1| hypothetical protein VCUG_02036 [Vavraia culicis 'floridensis']
Length = 103
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
PN +N E HTLGNMI ++L DP F+ YK HPL + L++ + + TP
Sbjct: 17 TPNTIELHINGESHTLGNMIAEKILSDPRCTFSAYKVSHPLNEEVDLKV-SAEKDTP 72
>gi|157107641|ref|XP_001649871.1| DNA-directed RNA polymerase I 16 kDa polypeptide [Aedes aegypti]
gi|157131975|ref|XP_001662388.1| DNA-directed RNA polymerase I 16 kDa polypeptide [Aedes aegypti]
gi|108868667|gb|EAT32892.1| AAEL014869-PA [Aedes aegypti]
gi|108871328|gb|EAT35553.1| AAEL012284-PA [Aedes aegypti]
Length = 103
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E HTLGN++++ + K P V F GY PHP E+K RIQ D L +
Sbjct: 20 FVFEDEGHTLGNVLKSIICKYPDVNFCGYTVPHPAENKMHFRIQAARNVRAIDILKRGLE 79
Query: 79 DL 80
DL
Sbjct: 80 DL 81
>gi|213512884|ref|NP_001134696.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo salar]
gi|209735308|gb|ACI68523.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo salar]
gi|303657411|gb|ADM15874.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo salar]
Length = 115
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
+ D F +++EDHTLGN +R ++K+ V F GY HP E K RIQT
Sbjct: 16 QADGADEGCVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGGV 75
Query: 68 TPHDAL---MNAITDLLAE-LSLFEER 90
+ L +N +TD+ L+ F+ R
Sbjct: 76 PAVEPLRRGLNELTDVCQHVLNTFQRR 102
>gi|209877969|ref|XP_002140426.1| DNA-directed RNA polymerases I and III subunit RPAC2
[Cryptosporidium muris RN66]
gi|209556032|gb|EEA06077.1| DNA-directed RNA polymerases I and III subunit RPAC2, putative
[Cryptosporidium muris RN66]
Length = 160
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
F +N EDHTLGN++R+ + +P FAGY PHP LRI+T +
Sbjct: 35 FQINGEDHTLGNIMRHLAMLNPSTTFAGYAIPHPSISSMNLRIETVS 81
>gi|157871878|ref|XP_001684488.1| DNA-directed RNA polymerase-like protein [Leishmania major strain
Friedlin]
gi|68127557|emb|CAJ05635.1| DNA-directed RNA polymerase-like protein [Leishmania major strain
Friedlin]
Length = 137
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTT 64
+ A+ + EDHTLGN +R+ L+++ V AGY PHPLE K +L +Q +
Sbjct: 46 STAVVAFSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQAS 95
>gi|223646456|gb|ACN09986.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo
salar]
gi|223672303|gb|ACN12333.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Salmo
salar]
Length = 102
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
+ D F +++EDHTLGN +R ++K+ V F GY HP E K RIQT
Sbjct: 3 QADGADEGCVTFVLHEEDHTLGNSLRYMVMKNLDVDFCGYSITHPSESKINFRIQTRGGV 62
Query: 68 TPHDAL---MNAITDLLAE-LSLFEER 90
+ L +N +TD+ L+ F+ R
Sbjct: 63 PAVEPLRRGLNELTDVCQHVLNTFQRR 89
>gi|268573450|ref|XP_002641702.1| Hypothetical protein CBG10036 [Caenorhabditis briggsae]
gi|74846694|sp|Q61IX2.1|RPAC2_CAEBR RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
Length = 145
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P+ + +EDHT+GN I++ L + V F GY PHPLE K + R+QT + L
Sbjct: 59 PSNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVL 118
Query: 74 MNAITDLLAELSLFEERF 91
+ A + S +F
Sbjct: 119 VKAFESVEQVFSTIRGKF 136
>gi|71421443|ref|XP_811802.1| DNA-directed RNA polymerase I/III subunit [Trypanosoma cruzi strain
CL Brener]
gi|70876509|gb|EAN89951.1| DNA-directed RNA polymerase I/III subunit, putative [Trypanosoma
cruzi]
Length = 134
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 11 TKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPH 70
T + + EDHTLGN +R+ L+++ V AGY PHPLE K +L +Q+T
Sbjct: 41 TDSESTVTIAFSHEDHTLGNPLRHVLMQNREVTSAGYAIPHPLEAKMLLHVQST------ 94
Query: 71 DALMNAITDLLAELS 85
D + A+ + L L+
Sbjct: 95 DYAVEAVAEGLERLA 109
>gi|348536761|ref|XP_003455864.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC2-like [Oreochromis niloticus]
Length = 114
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA-- 65
+ D F ++ EDHTLGN +R ++K+ V F GY HP E K RIQT
Sbjct: 15 QADGADEGCVTFVLHDEDHTLGNSLRYMIMKNADVEFCGYTITHPSESKINFRIQTRGGI 74
Query: 66 -ESTPHDALMNAITDLLAE-LSLFEER 90
+ P +N ++D+ L+ F+ R
Sbjct: 75 PAAEPLRRGLNELSDVCQHVLNTFQAR 101
>gi|297822669|ref|XP_002879217.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325056|gb|EFH55476.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 122
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE 66
A FT+++EDHTL N +R L +DP V A Y PHP + +R+QTT +
Sbjct: 12 ASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGD 61
>gi|15227556|ref|NP_180514.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis
thaliana]
gi|79323435|ref|NP_001031443.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis
thaliana]
gi|1184686|gb|AAC49453.1| RNA polymerase I(A) and III(C) 14 kDa subunit [Arabidopsis
thaliana]
gi|1184688|gb|AAC49454.1| Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa
subunit [Arabidopsis thaliana]
gi|3980382|gb|AAC95185.1| DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14)
[Arabidopsis thaliana]
gi|26452894|dbj|BAC43525.1| putative DNA-directed RNA polymerase 14 kDa subunit AtRPAC14
[Arabidopsis thaliana]
gi|28827296|gb|AAO50492.1| putative DNA-directed RNA polymerase 14 kDa subunit (AtRPAC14)
[Arabidopsis thaliana]
gi|330253175|gb|AEC08269.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis
thaliana]
gi|330253176|gb|AEC08270.1| DNA-directed RNA polymerase III subunit C19 [Arabidopsis
thaliana]
Length = 122
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE 66
A FT+++EDHTL N +R L +DP V A Y PHP + +R+QTT +
Sbjct: 12 ASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGD 61
>gi|71416664|ref|XP_810336.1| DNA-dependent RNA polymerases [Trypanosoma cruzi strain CL Brener]
gi|70874850|gb|EAN88485.1| DNA-dependent RNA polymerases, putative [Trypanosoma cruzi]
Length = 134
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 11 TKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPH 70
T + + EDHTLGN +R+ L+++ V AGY PHPLE K +L +Q+T
Sbjct: 41 TDSESTVTIAFSHEDHTLGNPLRHVLMQNREVTSAGYAIPHPLEAKMLLHVQST------ 94
Query: 71 DALMNAITDLLAELS 85
D + A+ + L L+
Sbjct: 95 DYAVEAVAEGLERLA 109
>gi|47187235|emb|CAG14790.1| unnamed protein product [Tetraodon nigroviridis]
Length = 60
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE 66
+ D F ++ EDHTLGN +R ++K+ V F GY HP E+K RIQT +
Sbjct: 2 QADGADEGCVTFVMHDEDHTLGNSLRYMVMKNEDVEFCGYTITHPSENKINFRIQTRGK 60
>gi|11595476|emb|CAC18330.1| RPB11b1beta protein [Homo sapiens]
gi|56270591|gb|AAH86857.1| POLR2J2 protein [Homo sapiens]
Length = 116
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQ 35
KI DTKVPNA +FT+NKEDHTLGN+I+++
Sbjct: 17 KITINKDTKVPNACLFTINKEDHTLGNIIKSR 48
>gi|340959302|gb|EGS20483.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 164
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT-- 63
++ L P AA F E HTLGN + + ++P V F Y PHP E+K +RIQT
Sbjct: 61 VRLLPGSTPTAASFEFLNEGHTLGNALSYIINRNPDVEFCAYAIPHPSENKMNVRIQTFE 120
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ +T AL + DL + ++F
Sbjct: 121 GSGTTAIQALEKGLRDLQDLCDVVTDKF 148
>gi|308502351|ref|XP_003113360.1| hypothetical protein CRE_25564 [Caenorhabditis remanei]
gi|308265661|gb|EFP09614.1| hypothetical protein CRE_25564 [Caenorhabditis remanei]
Length = 139
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
P+ + +EDHT+GN I++ L + V F GY PHPLE K + R+QT
Sbjct: 53 PSNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQT 102
>gi|378755189|gb|EHY65216.1| hypothetical protein NERG_01662 [Nematocida sp. 1 ERTm2]
Length = 108
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 12/83 (14%)
Query: 12 KVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPH- 70
K+ N+ ++ EDHT+GN + ++L K+ V FA YK PHPL++ IL+++ + +
Sbjct: 26 KLANSIELSIRDEDHTIGNALASELQKNEDVAFAAYKIPHPLQN--ILKVKVVVDKSEDR 83
Query: 71 ---------DALMNAITDLLAEL 84
D+L+N +L+++
Sbjct: 84 PIDFVKASLDSLINDCESMLSQI 106
>gi|390937790|ref|YP_006401528.1| RNA polymerase dimerization [Desulfurococcus fermentans DSM
16532]
gi|390190897|gb|AFL65953.1| RNA polymerase dimerization [Desulfurococcus fermentans DSM
16532]
Length = 93
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 18 IFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKF----ILRIQTTAESTPHDAL 73
+ + EDHTLGN++ + ++ P V +A Y+ PHPL++ F I++ T ES D +
Sbjct: 14 VLEIYGEDHTLGNLLAKEAIRHPGVEYAAYRVPHPLKNMFEFTIIVKPGYTVESILRD-I 72
Query: 74 MNAITDLLAEL-SLFEER 90
++ + + LAEL L EE+
Sbjct: 73 VDGLKNSLAELRRLVEEK 90
>gi|440494570|gb|ELQ76940.1| RNA polymerase, subunit L [Trachipleistophora hominis]
Length = 103
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 13 VPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
PN +N E HTLGN+I ++L DP F+ YK HPL+ + L++ + + TP
Sbjct: 17 TPNTVELHINGESHTLGNLIAEKILSDPRCTFSAYKVNHPLDEEVDLKV-SAQKDTP 72
>gi|17553746|ref|NP_499132.1| Protein RPAC-19 [Caenorhabditis elegans]
gi|464673|sp|P34476.1|RPAC2_CAEEL RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
gi|3877824|emb|CAA80165.1| Protein RPAC-19 [Caenorhabditis elegans]
Length = 144
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
P+ + +EDHT+GN I++ L + V F GY PHPLE K + R+QT
Sbjct: 58 PSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQT 107
>gi|195050014|ref|XP_001992809.1| GH13479 [Drosophila grimshawi]
gi|193899868|gb|EDV98734.1| GH13479 [Drosophila grimshawi]
Length = 106
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F N E HTLGN ++ + + P V F GY PHP E K RIQ+ E D L +
Sbjct: 20 FVFNNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRERAI-DLLKRGLE 78
Query: 79 DLLA 82
DL A
Sbjct: 79 DLEA 82
>gi|30172700|gb|AAP22341.1| unknown [Homo sapiens]
Length = 76
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQ 35
KI DTKVPNA +FT+NKEDHTLGN+I+++
Sbjct: 17 KITINKDTKVPNACLFTMNKEDHTLGNIIKSR 48
>gi|170029538|ref|XP_001842649.1| DNA-directed RNA polymerase I subunit D [Culex quinquefasciatus]
gi|167863233|gb|EDS26616.1| DNA-directed RNA polymerase I subunit D [Culex quinquefasciatus]
Length = 104
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E HTLGN++++ + K V F GY PHP E+K RIQ D L +
Sbjct: 20 FVFEDEGHTLGNVLKSIICKYSDVNFCGYTVPHPAENKMHFRIQAARNVRAIDVLRRGLE 79
Query: 79 DL 80
DL
Sbjct: 80 DL 81
>gi|156088259|ref|XP_001611536.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798790|gb|EDO07968.1| conserved hypothetical protein [Babesia bovis]
Length = 92
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 28 LGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDL 80
LG ++ +L KD V F GY+ PHPLE+K +R++ +S P ++NAI+ +
Sbjct: 19 LGQGVKKRLSKDERVAFVGYRMPHPLENKLEIRLRCKVDS-PFTVMLNAISSV 70
>gi|238231741|ref|NP_001154057.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225703254|gb|ACO07473.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225703690|gb|ACO07691.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
gi|225704120|gb|ACO07906.1| DNA-directed RNA polymerase I subunit D [Oncorhynchus mykiss]
Length = 115
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
+ D F +++EDHTLGN +R ++K V F GY HP E K RIQT
Sbjct: 16 QADGTDEGCVTFVLHEEDHTLGNSLRYMVMKSLDVDFCGYSITHPSESKINFRIQTRG 73
>gi|387593600|gb|EIJ88624.1| hypothetical protein NEQG_01314 [Nematocida parisii ERTm3]
gi|387597255|gb|EIJ94875.1| hypothetical protein NEPG_00400 [Nematocida parisii ERTm1]
Length = 97
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 12 KVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAEST 68
K+ N+ ++ EDHT+GN + ++L K+ V F+ YK PHPL++ IL+++ E +
Sbjct: 15 KLSNSIEISIRDEDHTIGNALASELQKEKDVSFSAYKIPHPLQN--ILKVKVVVEKS 69
>gi|302421254|ref|XP_003008457.1| DNA-directed RNA polymerase II [Verticillium albo-atrum VaMs.102]
gi|261351603|gb|EEY14031.1| DNA-directed RNA polymerase II [Verticillium albo-atrum VaMs.102]
Length = 75
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 41 HVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
HVL AGYK PHP + +R+QT TP DA+ I DL+ + S + F
Sbjct: 4 HVLMAGYKIPHPNVSEMFIRVQTDGTITPKDAVTEVIKDLMKDFSHLAQEF 54
>gi|413937798|gb|AFW72349.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
Length = 91
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 15/72 (20%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFA--------GYKQ----- 49
+K+ E DTK+ NAA FTV +EDHT+GN++R + KD H L G++Q
Sbjct: 17 KKVSYERDTKIVNAASFTVEREDHTVGNILR--MRKDAHALAWRIQRLRSNGFQQHAHSD 74
Query: 50 PHPLEHKFILRI 61
HPL + +R+
Sbjct: 75 VHPLAEEMCIRM 86
>gi|332864991|ref|XP_001135267.2| PREDICTED: uncharacterized protein LOC735728 [Pan troglodytes]
Length = 293
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRN 34
+KI D KVPNA +FT+NKEDHTLGN+I++
Sbjct: 262 KKISINKDFKVPNACLFTINKEDHTLGNIIKS 293
>gi|300707051|ref|XP_002995750.1| hypothetical protein NCER_101277 [Nosema ceranae BRL01]
gi|239604958|gb|EEQ82079.1| hypothetical protein NCER_101277 [Nosema ceranae BRL01]
Length = 91
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
D + N V KE H+LG+ + ++L KD +F+ YK HP + LR+ +
Sbjct: 8 DKNIKNTIELKVEKETHSLGSSLSDKLCKDKRCIFSSYKVCHPKDDFMFLRVSCDDAISV 67
Query: 70 HDALMNAITDL 80
D ++ + DL
Sbjct: 68 KDCIVENLVDL 78
>gi|83771710|dbj|BAE61840.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 152
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLF----------AGYKQPHPLEHKFILRIQTTA 65
AA F E HTLGN +R ++K +LF GY PHP E K LRIQT
Sbjct: 50 AASFQFEGEGHTLGNALRYAIMKKCVLLFIVSVVDIVEFCGYTIPHPSETKMNLRIQTYD 109
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
+ +AL + L+ + ++F
Sbjct: 110 TTNAVEALEKGLDSLMDLCDVVTDKF 135
>gi|91081259|ref|XP_975661.1| PREDICTED: similar to GA10493-PA [Tribolium castaneum]
gi|270005223|gb|EFA01671.1| hypothetical protein TcasGA2_TC007243 [Tribolium castaneum]
Length = 105
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ F + E HTLGN +R + P V F Y PHP+E LRIQ + DAL
Sbjct: 15 SCRTFILQGEGHTLGNALRCVISGYPDVEFCAYTVPHPMECSMHLRIQMRS-GRAVDALK 73
Query: 75 NAITDLLA 82
+ DL A
Sbjct: 74 RGLEDLAA 81
>gi|162605706|ref|XP_001713368.1| dna directed RNA polymerase II 13.6 kDa chain [Guillardia theta]
gi|13794300|gb|AAK39677.1|AF083031_34 dna directed RNA polymerase II 13.6 kDa chain [Guillardia theta]
Length = 108
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
N F ED T+G ++ +L +VLF GYK+ HPL++ L+I+T + + P L
Sbjct: 28 NTKEFLFENEDATMGEILVYKLENHKNVLFCGYKKLHPLDNNIFLKIKTNSFTDPVLELE 87
Query: 75 NAITDLLAELS 85
AI ++ +LS
Sbjct: 88 WAIKEIYVDLS 98
>gi|390594025|gb|EIN03443.1| hypothetical protein PUNSTDRAFT_139552 [Punctularia
strigosozonata HHB-11173 SS5]
Length = 364
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHV 42
+TK+PNAA+ + K+DHTLG MIR +LL P V
Sbjct: 15 NTKIPNAAMIKIVKQDHTLGKMIRAELLASPQV 47
>gi|195345039|ref|XP_002039083.1| GM17025 [Drosophila sechellia]
gi|195580105|ref|XP_002079896.1| GD21773 [Drosophila simulans]
gi|194134213|gb|EDW55729.1| GM17025 [Drosophila sechellia]
gi|194191905|gb|EDX05481.1| GD21773 [Drosophila simulans]
Length = 106
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ F E HTLGN ++ + + P V F GY PHP E K RIQ+ + D L
Sbjct: 16 GSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAI-DILK 74
Query: 75 NAITDL 80
+ DL
Sbjct: 75 RGLEDL 80
>gi|24585154|ref|NP_609950.1| lethal (2) 37Cg, isoform A [Drosophila melanogaster]
gi|74869335|sp|Q9VIZ0.1|RPAC2_DROME RecName: Full=Probable DNA-directed RNA polymerases I and III
subunit RPAC2; Short=RNA polymerases I and III subunit
AC2; AltName: Full=AC19; AltName: Full=DNA-directed RNA
polymerase I subunit D
gi|7298551|gb|AAF53770.1| lethal (2) 37Cg, isoform A [Drosophila melanogaster]
gi|113204857|gb|ABI34162.1| IP05502p [Drosophila melanogaster]
Length = 105
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E HTLGN ++ + + P V F GY PHP E K RIQ+ + D L +
Sbjct: 20 FVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAI-DILKRGLE 78
Query: 79 DL 80
DL
Sbjct: 79 DL 80
>gi|442628320|ref|NP_001260563.1| lethal (2) 37Cg, isoform D [Drosophila melanogaster]
gi|440213920|gb|AGB93098.1| lethal (2) 37Cg, isoform D [Drosophila melanogaster]
Length = 132
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ F E HTLGN ++ + + P V F GY PHP E K RIQ+ + D L
Sbjct: 43 GSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAI-DILK 101
Query: 75 NAITDL 80
+ DL
Sbjct: 102 RGLEDL 107
>gi|295293293|gb|ADF87912.1| MIP21960p [Drosophila melanogaster]
Length = 128
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ F E HTLGN ++ + + P V F GY PHP E K RIQ+ + D L
Sbjct: 36 GSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAI-DILK 94
Query: 75 NAITDL 80
+ DL
Sbjct: 95 RGLEDL 100
>gi|396081340|gb|AFN82957.1| DNA-directed RNA polymerase II [Encephalitozoon romaleae SJ-2008]
Length = 96
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RK+ N + E HTLGN++ ++L+D LF+ Y+ HP ++ LRI
Sbjct: 5 RKVTMNYAGNTRNTMELKIEGETHTLGNLLCEEMLEDKRCLFSAYRVEHPTDNHVFLRIT 64
Query: 63 TTAESTPHDALMNAI 77
+ D L+ +
Sbjct: 65 ADKDCQVRDLLLETL 79
>gi|442628318|ref|NP_001260562.1| lethal (2) 37Cg, isoform C [Drosophila melanogaster]
gi|440213919|gb|AGB93097.1| lethal (2) 37Cg, isoform C [Drosophila melanogaster]
Length = 116
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ F E HTLGN ++ + + P V F GY PHP E K RIQ+ + D L
Sbjct: 27 GSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAI-DILK 85
Query: 75 NAITDL 80
+ DL
Sbjct: 86 RGLEDL 91
>gi|195115228|ref|XP_002002166.1| GI17231 [Drosophila mojavensis]
gi|193912741|gb|EDW11608.1| GI17231 [Drosophila mojavensis]
Length = 106
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E HTLGN ++ + + P V F GY PHP E K RIQ+ E D L +
Sbjct: 20 FVFINEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRERAI-DLLKRGLE 78
Query: 79 DLLA 82
DL A
Sbjct: 79 DLEA 82
>gi|399949657|gb|AFP65315.1| DNA-deirected RNA polymerases I and III 16kDa polypeptide
[Chroomonas mesostigmatica CCMP1168]
Length = 100
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAEST 68
N + T EDHTLGN++R + +P V F GY PHP E L+I T ++
Sbjct: 13 NFNLVTFYNEDHTLGNVLRFLIAGNPEVKFVGYNVPHPSEKIMNLKIVTNVSNS 66
>gi|195398063|ref|XP_002057644.1| GJ17990 [Drosophila virilis]
gi|194141298|gb|EDW57717.1| GJ17990 [Drosophila virilis]
Length = 106
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E HTLGN ++ + + P V F GY PHP E K RIQ+ E D L +
Sbjct: 20 FVFINEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSHRERAI-DLLKRGLE 78
Query: 79 DLLA 82
DL A
Sbjct: 79 DLEA 82
>gi|194879704|ref|XP_001974284.1| GG21646 [Drosophila erecta]
gi|190657471|gb|EDV54684.1| GG21646 [Drosophila erecta]
Length = 106
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F E HTLGN ++ + + P V F GY PHP E K RIQ+
Sbjct: 20 FVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQS 64
>gi|195484391|ref|XP_002090674.1| GE12666 [Drosophila yakuba]
gi|194176775|gb|EDW90386.1| GE12666 [Drosophila yakuba]
Length = 106
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F E HTLGN ++ + + P V F GY PHP E K RIQ+
Sbjct: 20 FVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQS 64
>gi|256071190|ref|XP_002571924.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|353231403|emb|CCD77821.1| putative dna-directed RNA polymerase I [Schistosoma mansoni]
Length = 490
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A FT EDHTLG +R +L+D V F GY PHPLE IQ S DAL N
Sbjct: 403 ATFTFFGEDHTLGLALRYCILRDESVSFCGYCVPHPLEDMINFDIQMKKGSAI-DALRNG 461
Query: 77 I 77
+
Sbjct: 462 L 462
>gi|282164176|ref|YP_003356561.1| DNA-directed RNA polymerase subunit L [Methanocella paludicola
SANAE]
gi|282156490|dbj|BAI61578.1| DNA-directed RNA polymerase subunit L [Methanocella paludicola
SANAE]
Length = 95
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ + DT++ + EDHTL N +++ LL+D V A Y +P IL I+T
Sbjct: 4 KVLNKTDTEIE----VEIKGEDHTLMNALKSALLRDKAVKVATYDIVYPGISNPILYIRT 59
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ P DAL A DL E F + F
Sbjct: 60 SKSEDPIDALKKASKDLADECETFIDLF 87
>gi|345481326|ref|XP_001604778.2| PREDICTED: probable DNA-directed RNA polymerases I and III
subunit RPAC2-like [Nasonia vitripennis]
Length = 107
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E HTLGN++R+ + P V F GY PHP E K RIQ + D L +
Sbjct: 20 FVFQDEGHTLGNVLRSIVAHYPDVEFCGYTVPHPAEAKMHFRIQAK-KGRAVDILRRGLE 78
Query: 79 DL 80
DL
Sbjct: 79 DL 80
>gi|224035429|gb|ACN36790.1| unknown [Zea mays]
Length = 88
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLF 44
+K+ E DTK+ NAA FTV +EDHT+G+ Q+ P + F
Sbjct: 17 KKVSYERDTKIVNAASFTVEREDHTVGSCTETQMFSLPGISF 58
>gi|307195509|gb|EFN77395.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Harpegnathos saltator]
Length = 101
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
+L K + F E HTLGN ++ + + P V+ GY HP E K +LRIQ T
Sbjct: 2 QLPEKGVESKTFVFMDEGHTLGNALKYVISQYPEVIMCGYTLQHPAESKMLLRIQ-TKNG 60
Query: 68 TPHDALMNAITDL 80
++ L + DL
Sbjct: 61 NAYELLKRGLEDL 73
>gi|403344569|gb|EJY71632.1| DNA-directed RNA polymerase I subunit D [Oxytricha trifallax]
Length = 154
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
A ++ EDHTLGN++RN ++K+ V F Y PHP E +R+Q
Sbjct: 66 ATYSFLNEDHTLGNLLRNVIIKNNQVEFCAYSVPHPSEPIMNVRLQ 111
>gi|225581054|gb|ACN94631.1| GA10493 [Drosophila miranda]
Length = 110
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ F E HTLGN ++ + + P V F GY PHP E K RIQ+ + D L
Sbjct: 16 GSRTFVFLNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAV-DLLK 74
Query: 75 NAITDLLA 82
+ DL A
Sbjct: 75 RGLEDLEA 82
>gi|195164594|ref|XP_002023131.1| GL21124 [Drosophila persimilis]
gi|198461937|ref|XP_001352281.2| GA10493 [Drosophila pseudoobscura pseudoobscura]
gi|194105216|gb|EDW27259.1| GL21124 [Drosophila persimilis]
gi|198142415|gb|EAL29383.2| GA10493 [Drosophila pseudoobscura pseudoobscura]
Length = 110
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E HTLGN ++ + + P V F GY PHP E K RIQ+ + D L +
Sbjct: 20 FVFLNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAV-DLLKRGLE 78
Query: 79 DLLA 82
DL A
Sbjct: 79 DLEA 82
>gi|357605525|gb|EHJ64656.1| hypothetical protein KGM_09653 [Danaus plexippus]
Length = 103
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
+ E HTLGN ++ + + V F GY PHP E K RIQ T E+ D L +T
Sbjct: 22 YVFQNESHTLGNALKCIIDRYEDVQFCGYTVPHPAEAKMHFRIQ-TQETPTLDILKRGLT 80
Query: 79 DL 80
DL
Sbjct: 81 DL 82
>gi|324515757|gb|ADY46304.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Ascaris
suum]
Length = 119
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 12 KVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
K P +++EDHT+GN +++ L K V F GY PHPLE K TA
Sbjct: 23 KDPTNLTVILHEEDHTIGNSLKHILCKMAEVEFCGYNVPHPLEDKIFSSCTDTARC 78
>gi|194759330|ref|XP_001961902.1| GF15205 [Drosophila ananassae]
gi|190615599|gb|EDV31123.1| GF15205 [Drosophila ananassae]
Length = 106
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E HTLGN ++ + + P V F GY PHP E K RIQ+ + D L +
Sbjct: 20 FVFMNEGHTLGNALKTIISRYPEVDFCGYTIPHPTEQKLHFRIQSHRDRAV-DILKRGLE 78
Query: 79 DLLA 82
DL A
Sbjct: 79 DLEA 82
>gi|401826259|ref|XP_003887223.1| RNA polymerase II subunit Rpb11 [Encephalitozoon hellem ATCC
50504]
gi|392998382|gb|AFM98242.1| RNA polymerase II subunit Rpb11 [Encephalitozoon hellem ATCC
50504]
Length = 96
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RKI N + E HTLGN++ ++L+D LF+ Y+ HP ++ LRI
Sbjct: 5 RKITMSYVGNTRNTVEMKIEGETHTLGNLLCEEMLEDKRCLFSAYRVEHPTDNHVFLRIT 64
Query: 63 TTAESTPHDALMNAI 77
+ D + +
Sbjct: 65 ADKDCQVKDLFLETL 79
>gi|19173564|ref|NP_597367.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|19170770|emb|CAD26544.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|449329222|gb|AGE95496.1| DNA-directed RNA polymerase II [Encephalitozoon cuniculi]
Length = 96
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
RK+ N + E HTLGN++ +LL+D LF+ Y+ HP + LR+
Sbjct: 5 RKVTMNYVGNTRNTIELRIEDETHTLGNLLSEELLEDKRCLFSAYRVEHPADTHVFLRLT 64
Query: 63 TTAESTPHDALMNAI 77
+ D L+ +
Sbjct: 65 ADRDCQVRDLLLETL 79
>gi|18976422|ref|NP_577779.1| DNA-directed RNA polymerase subunit L [Pyrococcus furiosus DSM
3638]
gi|397652234|ref|YP_006492815.1| DNA-directed RNA polymerase subunit L [Pyrococcus furiosus COM1]
gi|23822104|sp|Q8U4N1.1|RPOL_PYRFU RecName: Full=DNA-directed RNA polymerase subunit L
gi|18891954|gb|AAL80174.1| DNA-directed RNA polymerase subunit l [Pyrococcus furiosus DSM
3638]
gi|393189825|gb|AFN04523.1| DNA-directed RNA polymerase subunit L [Pyrococcus furiosus COM1]
Length = 95
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTA 65
E+ K N F + EDHT N++ L ++PHV F Y HP + K R+ T
Sbjct: 4 EVIKKEENLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDG 63
Query: 66 ESTPHDALMNA 76
E TP +AL A
Sbjct: 64 EITPEEALEEA 74
>gi|332158208|ref|YP_004423487.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. NA2]
gi|331033671|gb|AEC51483.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. NA2]
Length = 95
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L ++PHV FA Y HP + K R+ T + TP AL +A
Sbjct: 15 FYLEGEDHTFANLLTETLRENPHVKFAAYTIEHPITMARKPRFRVVTDGKITPEKALEDA 74
>gi|385806140|ref|YP_005842538.1| RNA polymerase, dimerization [Fervidicoccus fontis Kam940]
gi|383796003|gb|AFH43086.1| RNA polymerase, dimerization [Fervidicoccus fontis Kam940]
Length = 98
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTA 65
IK+++ K ++ EDHT GN++ L+K V+ + Y+ HPL+++ +L ++T
Sbjct: 11 IKQMNEKELEIVLYD---EDHTFGNLMAKTLMKIDGVVMSYYRIDHPLKNEMVLYLKTDG 67
Query: 66 ESTPHDALMNAITDLLAELSLFEERF 91
P +AL I L E+ E +
Sbjct: 68 SIKPVEALKKGIGLLKDEIRELETKI 93
>gi|413937788|gb|AFW72339.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
gi|413937789|gb|AFW72340.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
Length = 88
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHV 42
+K+ E DTK+ NAA FTV +EDHT+G+ Q+ P +
Sbjct: 17 KKVSYERDTKIVNAASFTVEREDHTVGSCTETQMFSLPGI 56
>gi|14591738|ref|NP_142060.1| DNA-directed RNA polymerase subunit L [Pyrococcus horikoshii OT3]
gi|11387091|sp|P57671.1|RPOL_PYRHO RecName: Full=DNA-directed RNA polymerase subunit L
Length = 95
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L +DPHV F Y HP + K R+ T + TP AL A
Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEA 74
>gi|349915757|dbj|GAA27694.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Clonorchis
sinensis]
Length = 483
Score = 43.5 bits (101), Expect = 0.018, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
+T + EDHTLG +R +L F GY PHPLE K +Q S HDAL +
Sbjct: 396 YTFHGEDHTLGLALRYCILHSTKATFCGYCVPHPLEDKIHFDVQVKNGSA-HDALREGL 453
>gi|383320161|ref|YP_005381002.1| DNA-directed RNA polymerase subunit L [Methanocella conradii
HZ254]
gi|379321531|gb|AFD00484.1| DNA-directed RNA polymerase, subunit L [Methanocella conradii
HZ254]
Length = 94
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 1 MIRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILR 60
M K++K+ DT++ + EDHTL N ++ LL D V A Y P +L
Sbjct: 1 MDVKVLKKTDTEIE----LEIKGEDHTLLNALKASLLNDKDVKVATYDIEFPGISNPVLF 56
Query: 61 IQTTAESTPHDALMNAITDLLAELSLFEERF 91
++TT P +A+ A L E F E F
Sbjct: 57 VRTTGSEDPIEAIKKAAKGLAGECEAFMELF 87
>gi|320100250|ref|YP_004175842.1| RNA polymerase dimerization [Desulfurococcus mucosus DSM 2162]
gi|319752602|gb|ADV64360.1| RNA polymerase dimerization [Desulfurococcus mucosus DSM 2162]
Length = 93
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 18 IFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
+ V+ EDHTLGN++ + ++ P V ++ Y+ PHPL++ F I + L +
Sbjct: 14 VVEVHGEDHTLGNLLAKEAIRHPGVEYSMYRVPHPLKNMFEFTIIVKPGYSVDSVLKEIV 73
Query: 78 TDLLAELSLF 87
L LS F
Sbjct: 74 EGLKKTLSEF 83
>gi|124028487|ref|YP_001013807.1| DNA-directed RNA polymerase subunit L [Hyperthermus butylicus DSM
5456]
gi|123979181|gb|ABM81462.1| DNA-directed RNA polymerase subunit L [Hyperthermus butylicus DSM
5456]
Length = 105
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAE 83
ED T+ N+I ++ P V++A Y HPL ++ + T P D L + D++ +
Sbjct: 24 EDQTIANLIAKYAIRKPGVVYASYIISHPLVSNPVIVLSTDGSRDPLDVLEEVLKDIITD 83
Query: 84 LSLFEERF 91
F E F
Sbjct: 84 AKKFIEEF 91
>gi|332016284|gb|EGI57197.1| Putative DNA-directed RNA polymerases I and III subunit RPAC2
[Acromyrmex echinatior]
Length = 103
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
F + E HTLGN + + + + P V G+ PHP E++ L IQTT E+
Sbjct: 12 GTFVFDDEGHTLGNALASVINEYPGVKICGHTVPHPAENRMHLNIQTTGEN 62
>gi|225708772|gb|ACO10232.1| DNA-directed RNA polymerases I and III subunit RPAC2 [Caligus
rogercresseyi]
Length = 57
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 43 LFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
F GY PHP E + +LRIQT + DAL + DL S+ +F
Sbjct: 3 FFCGYSIPHPAEDQMLLRIQTVSSVPAQDALRRGLEDLKDMCSVVSSKF 51
>gi|413937796|gb|AFW72347.1| hypothetical protein ZEAMMB73_270623 [Zea mays]
Length = 48
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIR 33
+K+ E DTK+ NAA FTV +EDHT+GN++R
Sbjct: 17 KKVSYERDTKIVNAASFTVEREDHTVGNILR 47
>gi|160331703|ref|XP_001712558.1| rpc9 [Hemiselmis andersenii]
gi|159766007|gb|ABW98233.1| rpc9 [Hemiselmis andersenii]
Length = 100
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTT 64
EDHTLGN++R + +P++ + GY PHP E+ L+I ++
Sbjct: 22 EDHTLGNILRTVIEGNPNIDYVGYNIPHPSENIMNLKISSS 62
>gi|288559427|ref|YP_003422913.1| DNA-directed RNA polymerase subunit L RpoL [Methanobrevibacter
ruminantium M1]
gi|288542137|gb|ADC46021.1| DNA-directed RNA polymerase subunit L RpoL [Methanobrevibacter
ruminantium M1]
Length = 92
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPL--EHKFILRIQTTAESTPHDALMNAIT 78
++ E+H+L N++R L++D V +A Y HPL K ++ I+T P ++L+ A T
Sbjct: 17 IHGENHSLCNVLRKYLMEDDDVEYAVYGIDHPLTGAGKPVMTIKTKRSKRPRNSLLKAAT 76
Query: 79 DLLAELSLFEE 89
L E + F+E
Sbjct: 77 RLKEETAEFKE 87
>gi|449019035|dbj|BAM82437.1| RNA polymerase I, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 117
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 18 IFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL---- 73
+ T+ E HTLGN +R L ++P V GY PHP E L + + S D++
Sbjct: 37 VLTLRGEGHTLGNALRYMLTREPGVQQVGYTIPHPSEDCLKLYVVSKPGSRALDSVKLAL 96
Query: 74 --MNAITDLLAELSLFEERF 91
+ + D++ E +EE F
Sbjct: 97 FHLTQLCDIVGE--KYEEAF 114
>gi|299741997|ref|XP_001832180.2| hypothetical protein CC1G_02442 [Coprinopsis cinerea
okayama7#130]
gi|298404981|gb|EAU89553.2| hypothetical protein CC1G_02442 [Coprinopsis cinerea
okayama7#130]
Length = 102
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 6 IKELDTKVPN--AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
IK L P+ AA + ++ E HT+GN +R L+K+ PHP E+ +RIQ
Sbjct: 8 IKILKGAAPDLSAATYQLHDESHTIGNSLRWMLMKN---------NPHPSENVINVRIQM 58
Query: 64 TAESTPHDALMNAITDL--LAEL-------SLFEERF 91
+ DAL+ A++DL L E SL EE+F
Sbjct: 59 YDGLSSLDALLKALSDLDNLCEAVEDAYLESLREEKF 95
>gi|330508815|ref|YP_004385243.1| DNA-directed RNA polymerase subunit L [Methanosaeta concilii GP6]
gi|328929623|gb|AEB69425.1| DNA-directed RNA polymerase subunit L [Methanosaeta concilii GP6]
Length = 91
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 11 TKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPH 70
+K N A+ E HT+ N++R +LLKD VL A Y P+ + R+ T + P
Sbjct: 7 SKTENEAVIEFVGEGHTILNLLRTELLKDKRVLMATYDTKFPVMDNPVFRLVTNG-ADPI 65
Query: 71 DALMNAITDLLAELSLFEERF 91
AL A + ++ + F ++
Sbjct: 66 IALKEATSRIIDQCDEFSSKY 86
>gi|341581752|ref|YP_004762244.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. 4557]
gi|340809410|gb|AEK72567.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. 4557]
Length = 95
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDA 72
N F + EDHT N++ L ++ HV FAGY HP + K R+ T + TP A
Sbjct: 11 NVLEFYLEGEDHTFANLLNEVLHENKHVTFAGYTIEHPVLMARKPKFRVVTDGKVTPEKA 70
Query: 73 LMNA 76
L A
Sbjct: 71 LEEA 74
>gi|390960482|ref|YP_006424316.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. CL1]
gi|390518790|gb|AFL94522.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. CL1]
Length = 95
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDA 72
N F + EDHT N++ L ++ HV FAGY HP + K R+ T + TP A
Sbjct: 11 NVLEFYLEGEDHTFANLLNEVLHENEHVTFAGYTIEHPILMARKPRFRVVTDGKVTPEKA 70
Query: 73 LMNA 76
L A
Sbjct: 71 LEEA 74
>gi|402471533|gb|EJW05250.1| hypothetical protein EDEG_00715 [Edhazardia aedis USNM 41457]
Length = 107
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
N + V EDHTL N +R + K+ HV GY PHP E K L+IQ
Sbjct: 16 NDSTVEVIDEDHTLLNPLRYMITKNDHVELVGYSIPHPSERKAQLKIQ 63
>gi|353238406|emb|CCA70353.1| hypothetical protein PIIN_04292 [Piriformospora indica DSM 11827]
Length = 97
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
A + + E HTLGN +R ++K+ PHP E+K +RIQ + DAL+ A
Sbjct: 17 ASYAIADETHTLGNALRWMIMKN---------APHPSENKIHIRIQMYDNQSSLDALIEA 67
Query: 77 ITDLLAELSLFEERF 91
+ L ++ +E++
Sbjct: 68 LDALDDVCTVIDEKY 82
>gi|409095587|ref|ZP_11215611.1| DNA-directed RNA polymerase subunit L [Thermococcus zilligii AN1]
Length = 95
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRI 61
++IK D K+ F + EDHT N++ L +D HV FA Y HP + K ++
Sbjct: 4 EVIKREDNKLE----FYLEGEDHTFANLLVEVLHEDEHVKFAAYSIDHPILMARKPKFKV 59
Query: 62 QTTAESTPHDALMNAITDLL 81
T + +P +AL A +
Sbjct: 60 VTDGKESPEEALGKAAQKIF 79
>gi|389851562|ref|YP_006353796.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. ST04]
gi|388248868|gb|AFK21721.1| DNA-directed RNA polymerase subunit L [Pyrococcus sp. ST04]
Length = 97
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L ++PHV F Y HP + K R+ T + TP AL A
Sbjct: 15 FYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGKVTPEQALEEA 74
Query: 77 ITDLL 81
+
Sbjct: 75 AKKIF 79
>gi|307175199|gb|EFN65277.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Camponotus floridanus]
Length = 97
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
F E HTLGN + + + P + Y PHP E+K IQTT ES
Sbjct: 7 GTFVFVDEGHTLGNALSYVINQYPGIKICAYTVPHPAENKIHFNIQTTGES 57
>gi|14520268|ref|NP_125743.1| DNA-directed RNA polymerase subunit L [Pyrococcus abyssi GE5]
gi|11387115|sp|Q9V2M4.1|RPOL_PYRAB RecName: Full=DNA-directed RNA polymerase subunit L
gi|5457483|emb|CAB48974.1| rpoL DNA-directed RNA polymerase, subunit L [Pyrococcus abyssi
GE5]
gi|380740789|tpe|CCE69423.1| TPA: DNA-directed RNA polymerase subunit L [Pyrococcus abyssi
GE5]
Length = 95
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L ++PHV F Y HP + K R+ T + TP AL A
Sbjct: 15 FYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITPEKALEEA 74
>gi|307166226|gb|EFN60456.1| Probable DNA-directed RNA polymerases I and III subunit RPAC2
[Camponotus floridanus]
Length = 107
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 17 AIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
F E HTLGN + + + P + Y PHP E+K IQTT ES
Sbjct: 17 GTFVFVDEGHTLGNALSYVINQYPGIKICAYTVPHPAENKIHFNIQTTGES 67
>gi|429217339|ref|YP_007175329.1| DNA-directed RNA polymerase subunit L [Caldisphaera lagunensis
DSM 15908]
gi|429133868|gb|AFZ70880.1| DNA-directed RNA polymerase, subunit L [Caldisphaera lagunensis
DSM 15908]
Length = 102
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
+ EDHT+GN++ L V A Y+ PHPLE++ I+ + P D L+ A+
Sbjct: 19 IEGEDHTIGNLLSTVLQTLKGVNIAYYEVPHPLENRLIIYMDLDENIDPKDKLIEAL 75
>gi|409076370|gb|EKM76742.1| hypothetical protein AGABI1DRAFT_131035 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 103
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 9/66 (13%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+AA F ++ E HT+GN +R L+K+ PHP E+ +RIQ + DAL+
Sbjct: 20 SAATFQIHDESHTMGNALRWMLMKNV---------PHPSENVINVRIQMYDNISSFDALI 70
Query: 75 NAITDL 80
+A+ +L
Sbjct: 71 SALDNL 76
>gi|330040694|ref|XP_003239996.1| DNA-deirected RNA polymerases I and III 16kDa polypeptide
[Cryptomonas paramecium]
gi|327206922|gb|AEA39098.1| DNA-deirected RNA polymerases I and III 16kDa polypeptide
[Cryptomonas paramecium]
Length = 106
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 18 IFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
+FT E+HTLGN+++N K+P + Y PHP ++ F L++ +
Sbjct: 16 VFTFYNENHTLGNILKNIACKNPFIEHVSYVVPHPSQNLFKLKMNS 61
>gi|315230251|ref|YP_004070687.1| DNA-directed RNA polymerase subunit L [Thermococcus barophilus
MP]
gi|315183279|gb|ADT83464.1| DNA-directed RNA polymerase subunit L [Thermococcus barophilus
MP]
Length = 95
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPL--EHKFILRIQTTAESTPHDA 72
N F + EDHT N++ L ++ HV FAGY HP+ K R+ T + TP A
Sbjct: 11 NVLEFYLVGEDHTFANLLNEVLHENKHVTFAGYTIEHPILTARKPKFRVVTDGKITPEKA 70
Query: 73 LMNA 76
L A
Sbjct: 71 LEEA 74
>gi|240103060|ref|YP_002959369.1| DNA-directed RNA polymerase subunit L [Thermococcus gammatolerans
EJ3]
gi|259494368|sp|C5A5J3.1|RPOL_THEGJ RecName: Full=DNA-directed RNA polymerase subunit L
gi|239910614|gb|ACS33505.1| DNA-directed RNA polymerase subunit L (rpoL) [Thermococcus
gammatolerans EJ3]
Length = 95
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L +D HV FA Y HP + K +I T + +P +AL A
Sbjct: 15 FYLEGEDHTFANLLVETLHEDKHVKFAAYSIDHPILMARKPRFKIVTDGKESPEEALEKA 74
>gi|297526174|ref|YP_003668198.1| RNA polymerase dimerization [Staphylothermus hellenicus DSM
12710]
gi|297255090|gb|ADI31299.1| RNA polymerase dimerization [Staphylothermus hellenicus DSM
12710]
Length = 97
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 27 TLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
TLGN+I + +K P V++A Y+ PHPL++K + I + ++ L+
Sbjct: 29 TLGNLIAKEAMKHPKVVYASYRIPHPLQNKLEIMIDVEPGADINEVLL 76
>gi|57641102|ref|YP_183580.1| DNA-directed RNA polymerase subunit L [Thermococcus kodakarensis
KOD1]
gi|73917889|sp|Q5JE88.1|RPOL_PYRKO RecName: Full=DNA-directed RNA polymerase subunit L
gi|57159426|dbj|BAD85356.1| DNA-directed RNA polymerase, subunit L [Thermococcus kodakarensis
KOD1]
Length = 94
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L ++ HV FAGY HP + K ++ T + TP AL A
Sbjct: 15 FYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEA 74
>gi|212223525|ref|YP_002306761.1| DNA-directed RNA polymerase subunit L [Thermococcus onnurineus
NA1]
gi|229564250|sp|B6YTH7.1|RPOL_THEON RecName: Full=DNA-directed RNA polymerase subunit L
gi|212008482|gb|ACJ15864.1| DNA-directed RNA polymerase, subunit L [Thermococcus onnurineus
NA1]
Length = 95
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDA 72
N F + EDHT N++ L ++ HV FAGY HP + K R+ T + TP
Sbjct: 11 NVLEFYLEGEDHTFANLLNEVLHENEHVTFAGYTIEHPVLMARKPKFRVVTDGKITPEQV 70
Query: 73 LMNA 76
L A
Sbjct: 71 LEEA 74
>gi|223478516|ref|YP_002583385.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. AM4]
gi|214033742|gb|EEB74568.1| DNA-directed RNA polymerase subunit L [Thermococcus sp. AM4]
Length = 98
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L +D HV FA Y HP + K +I T + +P +AL A
Sbjct: 15 FYLEGEDHTFANLLVETLHEDEHVKFAAYSIDHPILMARKPRFKIVTDGKESPEEALEKA 74
>gi|242398485|ref|YP_002993909.1| DNA-directed RNA polymerase subunit L [Thermococcus sibiricus MM
739]
gi|259494369|sp|C6A1R5.1|RPOL_THESM RecName: Full=DNA-directed RNA polymerase subunit L
gi|242264878|gb|ACS89560.1| DNA-directed RNA polymerase subunit L [Thermococcus sibiricus MM
739]
Length = 95
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L ++ HV FA Y HP + K RI T + TP AL A
Sbjct: 15 FYLVGEDHTFANLLSETLHENKHVTFAAYTIEHPVLMARKPRFRISTDGKITPEKALEEA 74
>gi|126465541|ref|YP_001040650.1| RNA polymerase [Staphylothermus marinus F1]
gi|126014364|gb|ABN69742.1| RNA polymerase, dimerisation [Staphylothermus marinus F1]
Length = 91
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 27 TLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
TLGN+I + +K P V++A Y+ PHPL+++ + I + + L+
Sbjct: 23 TLGNLIAKEAMKHPKVVYASYRIPHPLQNRLEIIINVEPGANISEVLL 70
>gi|371943713|gb|AEX61541.1| putative DNA-directed RNA polymerase subunit [Megavirus courdo7]
gi|425701296|gb|AFX92458.1| putative DNA directed RNA polymerase subunit [Megavirus courdo11]
Length = 148
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAEST 68
EDHTLGN++ L K + AGY PHP K ++ + + ST
Sbjct: 76 EDHTLGNLLEKVLQKCEFIEKAGYNMPHPFIDKIVVSYKLYSGST 120
>gi|363540879|ref|YP_004894465.1| mg414 gene product [Megavirus chiliensis]
gi|448825368|ref|YP_007418299.1| putative DNA directed RNA polymerase subunit [Megavirus lba]
gi|350612044|gb|AEQ33488.1| putative DNA directed RNA polymerase subunit [Megavirus chiliensis]
gi|444236553|gb|AGD92323.1| putative DNA directed RNA polymerase subunit [Megavirus lba]
Length = 361
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAEST 68
EDHTLGN++ L K + AGY PHP K ++ + + ST
Sbjct: 289 EDHTLGNLLEKVLQKCEFIEKAGYNMPHPFIDKIVVSYKLYSGST 333
>gi|284161839|ref|YP_003400462.1| RNA polymerase dimerization [Archaeoglobus profundus DSM 5631]
gi|284011836|gb|ADB57789.1| RNA polymerase dimerization [Archaeoglobus profundus DSM 5631]
Length = 86
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES------T 68
N + EDHT N++++ LL+D V A Y PHPL+ + L ++T +++
Sbjct: 11 NYVKLEIRGEDHTYLNLLQHYLLEDEDVEIARYYIPHPLQDRAELVVKTKSKNPLEAIKE 70
Query: 69 PHDALMNAITDLLAEL 84
++ ++ A +LLA++
Sbjct: 71 ANEKIVKACDELLAQI 86
>gi|396082418|gb|AFN84027.1| DNA-directed RNA polymerase I and III subunit AC19
[Encephalitozoon romaleae SJ-2008]
Length = 100
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 7 KELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKD---PHVLFAGYKQPHPLEHKFILRIQT 63
KE K+ N VNKEDHT+ N +R + K+ V GY PHP + + IQ
Sbjct: 3 KEDCIKILNDQTIQVNKEDHTIMNPLRWCISKNFVGEKVELVGYTIPHPSDDVSNITIQF 62
Query: 64 TAES--TPHDALMNAITDL 80
++ES TP + L I L
Sbjct: 63 SSESSQTPPNLLKKMIEGL 81
>gi|337285374|ref|YP_004624848.1| DNA-directed RNA polymerase subunit L [Pyrococcus yayanosii CH1]
gi|334901308|gb|AEH25576.1| DNA-directed RNA polymerase subunit L [Pyrococcus yayanosii CH1]
Length = 95
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L ++ H+ FA Y HP + K R+ T + TP AL A
Sbjct: 15 FYLEGEDHTFANLLVEILRENKHIKFAAYTIEHPITMARKPRFRVVTDGKVTPERALEEA 74
Query: 77 ITDLL 81
+
Sbjct: 75 AKKIF 79
>gi|159042100|ref|YP_001541352.1| DNA-directed RNA polymerase subunit L [Caldivirga maquilingensis
IC-167]
gi|157920935|gb|ABW02362.1| DNA-directed RNA polymerase subunit L [Caldivirga maquilingensis
IC-167]
Length = 104
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 20 TVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITD 79
TV ED+T+ + + +L+DP V FA + HPL L+++T + P L +A+
Sbjct: 19 TVEGEDYTVMSPLLTYILQDPEVEFATFDMDHPLLRNITLKLRTKGKD-PLKVLEDAVNR 77
Query: 80 LLAELSLFEERF 91
+L ++ E +
Sbjct: 78 ILNDIGELEGKL 89
>gi|408405125|ref|YP_006863108.1| DNA-directed RNA polymerase subunit L [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365721|gb|AFU59451.1| putative DNA-directed RNA polymerase subunit L [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 92
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
NA + +ED ++ +I+++LLK+ V FAG Q HPL ++ +R+ T
Sbjct: 11 NAIELKIREEDISILYIIQHELLKEKSVDFAGVIQKHPLTKEYQMRVVT 59
>gi|409048476|gb|EKM57954.1| hypothetical protein PHACADRAFT_116447 [Phanerochaete carnosa
HHB-10118-sp]
Length = 102
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+AA + ++ E HT+GN +R L+K+ PHP E+ LRIQ + +AL+
Sbjct: 19 SAATYQIHDESHTIGNSLRWMLMKN---------VPHPSENHIHLRIQMYDNLSSLEALL 69
Query: 75 NAITDL 80
A+ +L
Sbjct: 70 EALENL 75
>gi|375082272|ref|ZP_09729338.1| DNA-directed RNA polymerase subunit L [Thermococcus litoralis DSM
5473]
gi|374743029|gb|EHR79401.1| DNA-directed RNA polymerase subunit L [Thermococcus litoralis DSM
5473]
Length = 95
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L ++ HV FA Y HP + K ++ T + TP AL A
Sbjct: 15 FYLVGEDHTFANLLNEVLHENKHVTFAAYTIEHPVLMARKPRFKVATDGKITPEKALEEA 74
>gi|156937368|ref|YP_001435164.1| DNA-directed RNA polymerase subunit L [Ignicoccus hospitalis
KIN4/I]
gi|156566352|gb|ABU81757.1| DNA-directed RNA polymerase, subunit L [Ignicoccus hospitalis
KIN4/I]
Length = 98
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 7 KELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAE 66
KE+ ++PN E HTLGN+I +L + A Y HPL + I+T
Sbjct: 19 KEVRIRIPN--------ESHTLGNLI-TKLASRKKGVTALYMVEHPLRQVLWITIRTDGS 69
Query: 67 STPHDALMNAITDLLAELSLF 87
P++ L+ I + + L+ F
Sbjct: 70 VDPYEVLLETIDEAINYLNQF 90
>gi|288930667|ref|YP_003434727.1| RNA polymerase dimerization [Ferroglobus placidus DSM 10642]
gi|288892915|gb|ADC64452.1| RNA polymerase dimerization [Ferroglobus placidus DSM 10642]
Length = 86
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPL--EHKFILRIQTTAESTPHDA 72
N + EDHT N+++++LLKD V+ A Y PHP E + ++R T P A
Sbjct: 11 NFVKLVIKGEDHTYLNLLQHELLKDDDVILAKYHIPHPYVGEPELVVR---TKSKNPIQA 67
Query: 73 LMNA 76
+ A
Sbjct: 68 IKEA 71
>gi|170289751|ref|YP_001736567.1| DNA-directed RNA polymerase subunit L [Candidatus Korarchaeum
cryptofilum OPF8]
gi|229564219|sp|B1L7Q7.1|RPOL_KORCO RecName: Full=DNA-directed RNA polymerase subunit L
gi|170173831|gb|ACB06884.1| DNA-directed RNA polymerase, subunit L [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 98
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDL 80
+ E HTL + + +L V FAGY PHPL+ + +L ++ P + L AI L
Sbjct: 17 IRGETHTLLSPLVEELNSLDEVEFAGYDVPHPLKEESVLFLRVKEGMNPREVLKGAIRRL 76
Query: 81 LAELSLFEERF 91
+ + + F
Sbjct: 77 MEKYEIIGNSF 87
>gi|325969606|ref|YP_004245798.1| DNA-directed RNA polymerase subunit L [Vulcanisaeta moutnovskia
768-28]
gi|323708809|gb|ADY02296.1| DNA-directed RNA polymerase subunit L [Vulcanisaeta moutnovskia
768-28]
Length = 91
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 20 TVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITD 79
V E +TL + LLK P V +A Y HPL RI+T + P D + A+ +
Sbjct: 17 VVQGETYTLFAPLIEYLLKRPDVEYAMYDVDHPLTQNVRFRIKTKGKP-PLDVIKEAVNE 75
Query: 80 LLAELSLFEERF 91
+L ++ E+ F
Sbjct: 76 ILKDVEELEKGF 87
>gi|408395904|gb|EKJ75076.1| hypothetical protein FPSE_04788 [Fusarium pseudograminearum CS3096]
Length = 127
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 39 DPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLFEERF 91
DP V F Y PHP E K +RIQT T DAL + D+ + + F
Sbjct: 61 DPDVEFCAYSIPHPSEPKMNIRIQTY-NGTAVDALKKGLVDIQEVCDVVADEF 112
>gi|307595383|ref|YP_003901700.1| DNA-directed RNA polymerase subunit L [Vulcanisaeta distributa
DSM 14429]
gi|307550584|gb|ADN50649.1| DNA-directed RNA polymerase, subunit L [Vulcanisaeta distributa
DSM 14429]
Length = 91
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 20 TVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITD 79
V E +TL + LLK P V +A Y HPL RI+T P D + A+ +
Sbjct: 17 VVQGETYTLFAPLIEYLLKRPDVEYAMYDVDHPLTQNVRFRIKTKGRP-PLDVIKEAVNE 75
Query: 80 LLAELSLFEERF 91
+L ++ E+ F
Sbjct: 76 ILRDVEELEKGF 87
>gi|351737622|gb|AEQ60657.1| DNA directed RNA polymerase subunit L [Acanthamoeba castellanii
mamavirus]
gi|398257296|gb|EJN40904.1| DNA directed RNA polymerase subunit L [Acanthamoeba polyphaga
lentillevirus]
Length = 357
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFIL--RIQTTAESTPHDALMNAITDLL 81
EDHTLG ++ N L + +V AGY PH L K ++ ++ +E P L + IT L+
Sbjct: 285 EDHTLGTILENVLQQCEYVEKAGYCMPHLLIDKILVSYKLYDDSEIGPIKVLNDCITYLI 344
>gi|311977857|ref|YP_003986977.1| putative DNA directed RNA polymerase subunit [Acanthamoeba
polyphaga mimivirus]
gi|82000150|sp|Q5UQD9.1|YR470_MIMIV RecName: Full=Putative DNA directed RNA polymerase subunit R470
gi|55417086|gb|AAV50736.1| DNA directed RNA polymerase subunit L [Acanthamoeba polyphaga
mimivirus]
gi|308204852|gb|ADO18653.1| putative DNA directed RNA polymerase subunit [Acanthamoeba
polyphaga mimivirus]
gi|339061407|gb|AEJ34711.1| DNA-directed RNA polymerase subunit L [Acanthamoeba polyphaga
mimivirus]
Length = 357
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFIL--RIQTTAESTPHDALMNAITDLL 81
EDHTLG ++ N L + +V AGY PH L K ++ ++ +E P L + IT L+
Sbjct: 285 EDHTLGTILENVLQQCEYVEKAGYCMPHLLIDKILVSYKLYDDSEIGPIKVLNDCITYLI 344
>gi|294496391|ref|YP_003542884.1| DNA-directed RNA polymerase, subunit L [Methanohalophilus mahii
DSM 5219]
gi|292667390|gb|ADE37239.1| DNA-directed RNA polymerase, subunit L [Methanohalophilus mahii
DSM 5219]
Length = 91
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KII++ D ++ + E HTL NM+++ LL+D HV A Y H + + ++T
Sbjct: 4 KIIEKKDDEIQ----VEIKGESHTLLNMLKHFLLEDEHVDIASYDMLHVSISEPVFYVRT 59
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
+ P A+ +A L AE F F
Sbjct: 60 DGKD-PVQAIRDAAVKLTAECDEFSGVF 86
>gi|388254856|gb|AFK24970.1| hypothetical protein Josef01_19c08_27 [uncultured archaeon]
Length = 92
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
+ +ED ++ +++++LLK+ V FAG Q HPL ++ +R+ T P + + +A
Sbjct: 15 LKIREEDISILYIVQHELLKEKSVDFAGVIQKHPLTKEYQVRV-ATKRKDPMEVIQDA 71
>gi|261349794|ref|ZP_05975211.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
gi|288860578|gb|EFC92876.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
Length = 95
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F V+ E H + N +R+ L++D V +A Y HPL + + I+T P L A +
Sbjct: 19 FIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAAS 78
Query: 79 DLLAELSLFEE 89
L + + F++
Sbjct: 79 QLKDDAADFKK 89
>gi|297620223|ref|YP_003708328.1| RNA polymerase dimerization [Methanococcus voltae A3]
gi|297379200|gb|ADI37355.1| RNA polymerase dimerization [Methanococcus voltae A3]
Length = 94
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPL----EHKFI----LRIQTTAESTPH 70
F + EDH+L N++++ LL +V+ A Y HP+ K+I L ++T +
Sbjct: 14 FELTNEDHSLPNILKDILLSKENVIMASYNVEHPVLDPESGKYISNPLLVLETVEGTNAV 73
Query: 71 DALMNAITDLLA 82
+ L +++DL+A
Sbjct: 74 EILKESLSDLIA 85
>gi|148643416|ref|YP_001273929.1| DNA-directed RNA polymerase, subunit L, RpoL [Methanobrevibacter
smithii ATCC 35061]
gi|222445658|ref|ZP_03608173.1| hypothetical protein METSMIALI_01299 [Methanobrevibacter smithii
DSM 2375]
gi|148552433|gb|ABQ87561.1| DNA-directed RNA polymerase, subunit L, RpoL [Methanobrevibacter
smithii ATCC 35061]
gi|222435223|gb|EEE42388.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2375]
Length = 96
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F V+ E H + N +R+ L++D V +A Y HPL + + I+T P L A +
Sbjct: 20 FIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAAS 79
Query: 79 DLLAELSLFEE 89
L + + F++
Sbjct: 80 QLKDDAADFKK 90
>gi|336477758|ref|YP_004616899.1| RNA polymerase dimerization [Methanosalsum zhilinae DSM 4017]
gi|335931139|gb|AEH61680.1| RNA polymerase dimerization [Methanosalsum zhilinae DSM 4017]
Length = 92
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDL 80
+ EDHT NM++ LL+D V A Y H IL ++ T + P D + +A+ L
Sbjct: 17 IKGEDHTFLNMLKFILLEDERVNIASYDMKHVSISDPILFVK-TENTDPVDVVRDALAIL 75
Query: 81 LAELSLFEERF 91
+++ F E F
Sbjct: 76 ISQCDEFIESF 86
>gi|387592822|gb|EIJ87846.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
gi|387595443|gb|EIJ93067.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 95
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 9 LDTKVPNAAIFTVNKEDHTLGNMIR---NQLLKDPHVLFAGYKQPHPLEHKFILRIQ-TT 64
++ V ++ + K +HT+ N+IR N+ V GY PHP+E + I++IQ
Sbjct: 1 MEVNVKDSFTIELLKTNHTILNVIRWAINEFESVYDVELIGYTIPHPMEERAIMKIQLKR 60
Query: 65 AESTPHDALMN 75
E DA+++
Sbjct: 61 EEEQTEDAILS 71
>gi|441432272|ref|YP_007354314.1| DNA directed RNA polymerase subunit L [Acanthamoeba polyphaga
moumouvirus]
gi|371945069|gb|AEX62890.1| putative DNA-directed RNA polymerase subunit [Moumouvirus Monve]
gi|440383352|gb|AGC01878.1| DNA directed RNA polymerase subunit L [Acanthamoeba polyphaga
moumouvirus]
Length = 362
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPL 53
EDHTLG ++ + L K +V AGY PHP
Sbjct: 287 EDHTLGRLLEDVLQKCEYVEKAGYTMPHPF 316
>gi|451927533|gb|AGF85411.1| directed RNA polymerase subunit L [Moumouvirus goulette]
Length = 362
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPL 53
EDHTLG ++ + L K +V AGY PHP
Sbjct: 287 EDHTLGRLLEDVLQKCEYVEKAGYTMPHPF 316
>gi|310831472|ref|YP_003970115.1| putative DNA-dependent RNA polymerase subunit Rpb3/Rpb11 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386656|gb|ADO67516.1| putative DNA-dependent RNA polymerase subunit Rpb3/Rpb11 [Cafeteria
roenbergensis virus BV-PW1]
Length = 325
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 2 IRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRI 61
++KI +++ K N I + KE HT+GN+I + L P L+A Y Q H L+++ ++
Sbjct: 239 LKKIFPKINLK--NGEI-KIPKEKHTMGNLISHGLGLLPETLYATYYQKHSLDNEIFIKF 295
Query: 62 QTTAE 66
E
Sbjct: 296 GFNKE 300
>gi|327401581|ref|YP_004342420.1| DNA-directed RNA polymerase subunit L [Archaeoglobus veneficus
SNP6]
gi|327317089|gb|AEA47705.1| DNA-directed RNA polymerase subunit L [Archaeoglobus veneficus
SNP6]
Length = 86
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNA 76
V EDHT N++++ LL+D V+ A Y HPL + L ++T ++ P DA+ A
Sbjct: 17 VKGEDHTFLNLLQHYLLEDEDVVVAKYHISHPLVGEPELFVRTNGKN-PLDAIKEA 71
>gi|19074859|ref|NP_586365.1| DNA-DIRECTED RNA POLYMERASE I AND III SUBUNIT 14K (14 kDa
polypeptide) [Encephalitozoon cuniculi GB-M1]
gi|19069584|emb|CAD25969.1| DNA-DIRECTED RNA POLYMERASE I AND III SUBUNIT 14K (14 kDa
polypeptide) [Encephalitozoon cuniculi GB-M1]
gi|449328733|gb|AGE95010.1| DNA-directed RNA polymerase I and III subunit 14k
[Encephalitozoon cuniculi]
Length = 104
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 7 KELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKD---PHVLFAGYKQPHPLEHKFILRIQT 63
KE K+ N V KEDHT+ N +R + K+ V GY PHP + + IQ
Sbjct: 3 KEPRIKILNGQTVQVRKEDHTIMNPLRWCIGKNFTGEKVELVGYTIPHPSDDISNITIQL 62
Query: 64 TAES--TPHDALMNAITDL 80
ES TP + L + L
Sbjct: 63 CDESLQTPPNLLKKLVEGL 81
>gi|303391349|ref|XP_003073904.1| DNA-directed RNA polymerase I and III subunit AC19
[Encephalitozoon intestinalis ATCC 50506]
gi|303303053|gb|ADM12544.1| DNA-directed RNA polymerase I and III subunit AC19
[Encephalitozoon intestinalis ATCC 50506]
Length = 104
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 12 KVPNAAIFTVNKEDHTLGNMIRNQLLKD---PHVLFAGYKQPHPLEHKFILRIQTTAEST 68
++ N V KEDHT+ N +R + K+ +V GY PHP + L IQ + ES+
Sbjct: 8 RILNTQTIQVEKEDHTIMNPLRWCISKNFYGENVELVGYTIPHPSDDASNLTIQFSNESS 67
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,285,489,321
Number of Sequences: 23463169
Number of extensions: 42668275
Number of successful extensions: 90047
Number of sequences better than 100.0: 799
Number of HSP's better than 100.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 89245
Number of HSP's gapped (non-prelim): 804
length of query: 91
length of database: 8,064,228,071
effective HSP length: 61
effective length of query: 30
effective length of database: 6,632,974,762
effective search space: 198989242860
effective search space used: 198989242860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)