BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11162
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7PVQ9|RPB11_ANOGA DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae
GN=Rpb11 PE=2 SV=2
Length = 117
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 78/89 (87%), Positives = 85/89 (95%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKELD KVPNAAIFTVNKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF+LRIQ
Sbjct: 17 KKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT+E +PH+A MNAITDLL+ELSLFEERF
Sbjct: 77 TTSEYSPHEAFMNAITDLLSELSLFEERF 105
>sp|Q9VJE4|RPB11_DROME DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila
melanogaster GN=Rpb11 PE=3 SV=1
Length = 117
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 84/89 (94%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KIIKELDTKV NAAIFT+NKEDHTLGNMIRNQLLKDP+VLFAGYK PHPLEHKF++RIQ
Sbjct: 17 KKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TTA+ +P +A MNAITDLLAELSLFEERF
Sbjct: 77 TTADYSPQEAFMNAITDLLAELSLFEERF 105
>sp|Q60SM4|RPB11_CAEBR Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis briggsae GN=rpb-11 PE=3 SV=1
Length = 122
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 73/89 (82%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI E DTKVPNAAIFT+NKEDHTLGNM++ QLLKDP VLFAGYK PHPLEHK +LR+Q
Sbjct: 16 KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQ 75
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT +TP DAL AITDL+ ELSL E R
Sbjct: 76 TTNATTPADALTTAITDLVGELSLLEHRI 104
>sp|P52435|RPB11_HUMAN DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens
GN=POLR2J PE=1 SV=1
Length = 117
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>sp|Q32P79|RPB11_BOVIN DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus
GN=POLR2J PE=3 SV=1
Length = 117
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>sp|O08740|RPB11_MOUSE DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus
GN=Polr2j PE=2 SV=1
Length = 117
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+Q
Sbjct: 17 KKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT + +P +A NAITDL++ELSL EERF
Sbjct: 77 TTPDYSPQEAFTNAITDLISELSLLEERF 105
>sp|Q9GZM3|RPB1B_HUMAN DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens
GN=POLR2J2 PE=1 SV=1
Length = 115
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 74/88 (84%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QT
Sbjct: 17 KITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + +P +A NAITDL++ELSL EERF
Sbjct: 77 TPDYSPQEAFTNAITDLISELSLLEERF 104
>sp|Q9H1A7|RPB1C_HUMAN DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens
GN=POLR2J3 PE=2 SV=1
Length = 115
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 74/88 (84%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI DTKVPNA +FT+NKEDHTLGN+I++QLLKDP VLFAGYK PHPLEHK I+R+QT
Sbjct: 17 KITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQT 76
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
T + +P +A NAITDL++ELSL EERF
Sbjct: 77 TPDYSPQEAFTNAITDLISELSLLEERF 104
>sp|Q9XVH6|RPB11_CAEEL Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis elegans GN=rpb-11 PE=3 SV=1
Length = 122
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 71/88 (80%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K E DTKVPNAAIFT+ KEDHTLGNM++ QLLKDP VLFAGYK PHPLEHK +LRIQ
Sbjct: 16 KKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQ 75
Query: 63 TTAESTPHDALMNAITDLLAELSLFEER 90
TT +TP DAL AITDL+ ELSL E R
Sbjct: 76 TTNNTTPADALTTAITDLVGELSLLEHR 103
>sp|P87123|RPB11_SCHPO DNA-directed RNA polymerase II subunit RPB11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb11 PE=1 SV=1
Length = 123
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 57/81 (70%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K+ ELD+K PNAA+ T+ KEDHTL NM+ NQLL D VLFAGYK PHPL H FILR+QT
Sbjct: 17 KVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQT 76
Query: 64 TAESTPHDALMNAITDLLAEL 84
+ +P +++A L+ L
Sbjct: 77 VEDCSPKQVIVDAAKSLITHL 97
>sp|Q38859|RPB11_ARATH DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis
thaliana GN=RPB13.6 PE=2 SV=1
Length = 116
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 65/89 (73%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ + DTK+ NAA FTV +EDHT+GN++R QL +D +VLFAGY+ PHPL++K I+RI
Sbjct: 17 KKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIH 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
TT++S+P A AI DL EL + +F
Sbjct: 77 TTSQSSPMQAYNQAINDLDKELDYLKNQF 105
>sp|Q86JJ5|RPB11_DICDI DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium
discoideum GN=polr2j PE=3 SV=1
Length = 120
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 59/89 (66%)
Query: 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
+K+ DTK+PNA++FT+ KEDHT+GN+IR QL+ D ++FAGY+ PHPLEH +RIQ
Sbjct: 17 KKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQ 76
Query: 63 TTAESTPHDALMNAITDLLAELSLFEERF 91
T + P + + ++ L E + E F
Sbjct: 77 TNNNTNPLECVQKSMECLSREFTSLENSF 105
>sp|P38902|RPB11_YEAST DNA-directed RNA polymerase II subunit RPB11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB11 PE=1
SV=1
Length = 120
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 51/82 (62%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTP 69
DTK PNA + T KEDHTLGN+IR +LL D VLFA YK HP +F LRIQTT P
Sbjct: 24 DTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDP 83
Query: 70 HDALMNAITDLLAELSLFEERF 91
DAL NA ++ +L + F
Sbjct: 84 KDALKNACNSIINKLGALKTNF 105
>sp|P28000|RPAC2_YEAST DNA-directed RNA polymerases I and III subunit RPAC2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPC19 PE=1 SV=1
Length = 142
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
K++ + ++ +A F + +EDHTLGN +R ++K+P V F GY PHP E+ +RIQT
Sbjct: 48 KLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQT 107
Query: 64 TAESTPHDALMNAITDLLAELSLFEERF 91
E+T DAL + DL+ + E +F
Sbjct: 108 YGETTAVDALQKGLKDLMDLCDVVESKF 135
>sp|Q09177|RPAC2_SCHPO DNA-directed RNA polymerases I and III subunit RPAC2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc19 PE=2 SV=1
Length = 125
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ F + KEDHTLGN +R ++K+P V F GY PHP E K RIQT +T D L
Sbjct: 33 TSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLR 92
Query: 75 NAITDLLAELSLFEERF 91
+ DL+ E+F
Sbjct: 93 KGLDDLIDLCDAVTEKF 109
>sp|Q54ES6|RPC19_DICDI DNA-directed RNA polymerases I and III subunit rpc19
OS=Dictyostelium discoideum GN=rpc19 PE=3 SV=1
Length = 116
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
E+ + P+ A F EDHTLGN + L+K+P V F+GY PHP +++ LRIQT +
Sbjct: 27 EIISDRPDCATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNI 86
Query: 68 TPHDALMNAITDL 80
T ++L+ +TD+
Sbjct: 87 TAQESLLQGLTDI 99
>sp|Q8IER7|RPB11_PLAF7 Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
falciparum (isolate 3D7) GN=PF13_0023 PE=3 SV=1
Length = 126
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ IF + EDHT+GN+I+ QL +DP VLFA Y+QPHPL++ + I+ + L
Sbjct: 34 DCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAYRQPHPLQNAIEITIKPKGYAGVK-LLS 92
Query: 75 NAITDLLAELSLFEERF 91
+ + ++L++++ +E F
Sbjct: 93 DNVNNILSQVATLKENF 109
>sp|Q980K0|RPOL_SULSO DNA-directed RNA polymerase subunit L OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoL
PE=1 SV=1
Length = 92
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDL 80
+ EDHTLGN+I L + V FA Y QPHPL K I++I T TP DAL+ AI ++
Sbjct: 17 IEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENI 76
>sp|C3N7I8|RPOL_SULIY DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
+ EDHTLGN+I L K V FA Y QPHPL K I++I T P DAL+ AI
Sbjct: 17 IEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAI 73
>sp|C3NFY8|RPOL_SULIN DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoL PE=3 SV=1
Length = 92
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
+ EDHTLGN+I L K V FA Y QPHPL K I++I T P DAL+ AI
Sbjct: 17 IEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAI 73
>sp|C3MXM0|RPOL_SULIM DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
+ EDHTLGN+I L K V FA Y QPHPL K I++I T P DAL+ AI
Sbjct: 17 IEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAI 73
>sp|C3MRD1|RPOL_SULIL DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoL PE=3 SV=1
Length = 92
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
+ EDHTLGN+I L K V FA Y QPHPL K I++I T P DAL+ AI
Sbjct: 17 IEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAI 73
>sp|C4KIP6|RPOL_SULIK DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoL PE=3 SV=1
Length = 92
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
+ EDHTLGN+I L K V FA Y QPHPL K I++I T P DAL+ AI
Sbjct: 17 IEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAI 73
>sp|C3MZG6|RPOL_SULIA DNA-directed RNA polymerase subunit L OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoL PE=3 SV=1
Length = 92
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 34/57 (59%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
+ EDHTLGN+I L K V FA Y QPHPL K I++I T P DAL+ AI
Sbjct: 17 IEGEDHTLGNLIAGTLRKISGVSFASYYQPHPLTDKIIVKILTDGSIAPKDALLKAI 73
>sp|Q96YA7|RPOL_SULTO DNA-directed RNA polymerase subunit L OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=rpoL PE=3 SV=1
Length = 93
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
++ E+HT+GN+++ LLK P V FA Y +PHPL IL+I T +P +AL+ AI
Sbjct: 15 LQIDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALVKAI 73
>sp|Q4XS21|RPB11_PLACH Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
chabaudi GN=PC000833.03.0 PE=3 SV=1
Length = 126
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ IFT+ EDHT+GN+I+ L +DP V FA Y+QPHPL++ + I+ + L
Sbjct: 34 DCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNAIEITIRPKGYAGV-KLLS 92
Query: 75 NAITDLLAELSLFEERF 91
+ + +L ++S E F
Sbjct: 93 DNVHSILNQVSTLRETF 109
>sp|Q1RMG8|RPAC2_BOVIN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus
GN=POLR1D PE=2 SV=1
Length = 133
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMN 75
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT +
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQR 98
Query: 76 AITDLL 81
+TDL+
Sbjct: 99 GLTDLM 104
>sp|Q4YZZ7|RPB11_PLABA Probable DNA-directed RNA polymerase II subunit RPB11 OS=Plasmodium
berghei (strain Anka) GN=PB000758.01.0 PE=3 SV=1
Length = 126
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
+ IFT+ EDHT+GN+I+ L +DP V FA Y+QPHPL++ + I+ + L
Sbjct: 34 DCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNVIEITIRPKGYAGV-KLLS 92
Query: 75 NAITDLLAELSLFEERF 91
+ + +L ++S E F
Sbjct: 93 DNVHTILNQVSTLRETF 109
>sp|Q9Y2S0|RPAC2_HUMAN DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo
sapiens GN=POLR1D PE=1 SV=1
Length = 133
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 16 AAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT
Sbjct: 39 CVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQT 86
>sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus
musculus GN=Polr1d PE=2 SV=1
Length = 133
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALM 74
F +++EDHTLGN +R ++K+P V F GY HP E K LRIQT +
Sbjct: 38 QCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRGALPAVEPFQ 97
Query: 75 NAITDLL 81
+ +LL
Sbjct: 98 KGLNELL 104
>sp|Q6DRI4|RPAC2_DANRE DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio
GN=polr1d PE=3 SV=1
Length = 112
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT---TAE 66
D F +N+EDHTLGN +R ++K V F GY HP E K RIQT
Sbjct: 16 DGADEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPA 75
Query: 67 STPHDALMNAITDLLAE-LSLFEERF 91
S P +N +TD+ L FE R
Sbjct: 76 SEPLRNGLNNLTDVCKHVLQTFEARM 101
>sp|A4YHV0|RPOL_METS5 DNA-directed RNA polymerase subunit L OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=rpoL PE=3 SV=1
Length = 90
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDL 80
+ EDHTLGN+I +L V+ A Y PHPL+ + +++I+T +P +AL AI D+
Sbjct: 17 IQGEDHTLGNLIAGRLRSVKGVILATYYLPHPLKDELVIKIKTDGTISPREALNRAIEDV 76
>sp|Q5XK67|RPAC2_XENLA DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus
laevis GN=polr1d PE=3 SV=1
Length = 114
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
+ F +++EDHTLGN +R ++K+P V F GY HP E K RIQT
Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQT 70
>sp|P46217|RPOL_SULAC DNA-directed RNA polymerase subunit L OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) GN=rpoL PE=3 SV=1
Length = 90
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAI 77
++ E+HT+GN+++ LLK P V FA Y PHPL ++I T + +AL+ AI
Sbjct: 17 IDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREALIKAI 73
>sp|Q61IX2|RPAC2_CAEBR Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Caenorhabditis briggsae GN=CBG10036 PE=3 SV=1
Length = 145
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDAL 73
P+ + +EDHT+GN I++ L + V F GY PHPLE K + R+QT + L
Sbjct: 59 PSNLTLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVL 118
Query: 74 MNAITDLLAELSLFEERF 91
+ A + S +F
Sbjct: 119 VKAFESVEQVFSTIRGKF 136
>sp|P34476|RPAC2_CAEEL Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Caenorhabditis elegans GN=F58A4.9 PE=3 SV=1
Length = 144
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 14 PNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
P+ + +EDHT+GN I++ L + V F GY PHPLE K + R+QT
Sbjct: 58 PSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQT 107
>sp|Q9VIZ0|RPAC2_DROME Probable DNA-directed RNA polymerases I and III subunit RPAC2
OS=Drosophila melanogaster GN=l(2)37Cg PE=3 SV=1
Length = 105
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
F E HTLGN ++ + + P V F GY PHP E K RIQ+ + D L +
Sbjct: 20 FVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAI-DILKRGLE 78
Query: 79 DL 80
DL
Sbjct: 79 DL 80
>sp|Q8U4N1|RPOL_PYRFU DNA-directed RNA polymerase subunit L OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoL
PE=3 SV=1
Length = 95
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTA 65
E+ K N F + EDHT N++ L ++PHV F Y HP + K R+ T
Sbjct: 4 EVIKKEENLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDG 63
Query: 66 ESTPHDALMNA 76
E TP +AL A
Sbjct: 64 EITPEEALEEA 74
>sp|P57671|RPOL_PYRHO DNA-directed RNA polymerase subunit L OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
100139 / OT-3) GN=rpoL PE=3 SV=1
Length = 95
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L +DPHV F Y HP + K R+ T + TP AL A
Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEA 74
>sp|Q9V2M4|RPOL_PYRAB DNA-directed RNA polymerase subunit L OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rpoL PE=3 SV=1
Length = 95
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L ++PHV F Y HP + K R+ T + TP AL A
Sbjct: 15 FYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITPEKALEEA 74
>sp|C5A5J3|RPOL_THEGJ DNA-directed RNA polymerase subunit L OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=rpoL PE=3 SV=1
Length = 95
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L +D HV FA Y HP + K +I T + +P +AL A
Sbjct: 15 FYLEGEDHTFANLLVETLHEDKHVKFAAYSIDHPILMARKPRFKIVTDGKESPEEALEKA 74
>sp|Q5JE88|RPOL_PYRKO DNA-directed RNA polymerase subunit L OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoL PE=3
SV=1
Length = 94
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L ++ HV FAGY HP + K ++ T + TP AL A
Sbjct: 15 FYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEA 74
>sp|B6YTH7|RPOL_THEON DNA-directed RNA polymerase subunit L OS=Thermococcus onnurineus
(strain NA1) GN=rpoL PE=3 SV=1
Length = 95
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDA 72
N F + EDHT N++ L ++ HV FAGY HP + K R+ T + TP
Sbjct: 11 NVLEFYLEGEDHTFANLLNEVLHENEHVTFAGYTIEHPVLMARKPKFRVVTDGKITPEQV 70
Query: 73 LMNA 76
L A
Sbjct: 71 LEEA 74
>sp|C6A1R5|RPOL_THESM DNA-directed RNA polymerase subunit L OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rpoL PE=3 SV=1
Length = 95
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP--LEHKFILRIQTTAESTPHDALMNA 76
F + EDHT N++ L ++ HV FA Y HP + K RI T + TP AL A
Sbjct: 15 FYLVGEDHTFANLLSETLHENKHVTFAAYTIEHPVLMARKPRFRISTDGKITPEKALEEA 74
>sp|B1L7Q7|RPOL_KORCO DNA-directed RNA polymerase subunit L OS=Korarchaeum cryptofilum
(strain OPF8) GN=rpoL PE=3 SV=1
Length = 98
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 21 VNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDL 80
+ E HTL + + +L V FAGY PHPL+ + +L ++ P + L AI L
Sbjct: 17 IRGETHTLLSPLVEELNSLDEVEFAGYDVPHPLKEESVLFLRVKEGMNPREVLKGAIRRL 76
Query: 81 LAELSLFEERF 91
+ + + F
Sbjct: 77 MEKYEIIGNSF 87
>sp|Q5UQD9|YR470_MIMIV Putative DNA directed RNA polymerase subunit R470 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R470 PE=1 SV=1
Length = 357
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFIL--RIQTTAESTPHDALMNAITDLL 81
EDHTLG ++ N L + +V AGY PH L K ++ ++ +E P L + IT L+
Sbjct: 285 EDHTLGTILENVLQQCEYVEKAGYCMPHLLIDKILVSYKLYDDSEIGPIKVLNDCITYLI 344
>sp|Q0W8P1|RPOL_UNCMA DNA-directed RNA polymerase subunit L OS=Uncultured methanogenic
archaeon RC-I GN=rpoL PE=3 SV=1
Length = 93
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 4 KIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQT 63
KI+ + DT++ + E HT+ N +++ LL+D V A Y P +L ++T
Sbjct: 4 KILNKTDTEIQ----VEIKGESHTMMNALKSCLLEDKAVKVATYDIEFPGISDPVLYVRT 59
Query: 64 TAESTPHDALMNAITDLLAELSLF 87
P DA+ A L E F
Sbjct: 60 DKSEDPIDAIKVAAKKLADECDDF 83
>sp|O30032|RPOL_ARCFU DNA-directed RNA polymerase subunit L OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoL PE=3 SV=1
Length = 86
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 19 FTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78
+ E HT N++++ L++D V+ A Y PHPL + + I+T+ P +A+ A
Sbjct: 15 LVIKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKTSG-VDPLEAVKRANE 73
Query: 79 DLLAELSLFEERF 91
++A + E+
Sbjct: 74 KIIAACNTLLEQL 86
>sp|Q12W27|RPOL_METBU DNA-directed RNA polymerase subunit L OS=Methanococcoides
burtonii (strain DSM 6242) GN=rpoL PE=3 SV=1
Length = 91
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 24 EDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAE 83
E HTL NM++ LL+D V A Y H + +L I+ T + P D + A+ L+ E
Sbjct: 20 ESHTLLNMLKIILLEDERVHTASYDMKHVTISEPVLFIK-TENADPIDVVKAAVAKLITE 78
Query: 84 LSLF 87
F
Sbjct: 79 CEEF 82
>sp|Q46C10|RPOL_METBF DNA-directed RNA polymerase subunit L OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rpoL PE=3 SV=1
Length = 92
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 11 TKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPH 70
+K N + E HTL N++++ L+KD V A Y + IL I+T + P
Sbjct: 7 SKTDNELEVKLKGETHTLLNILKDLLIKDQRVEIAFYDMKYVSISDPILYIKTDG-TNPI 65
Query: 71 DALMNAITDLLAELSLFEERF 91
+ L +A + ++++ F + F
Sbjct: 66 EVLKDAASQIISQCDEFTDVF 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,993,042
Number of Sequences: 539616
Number of extensions: 1043531
Number of successful extensions: 2498
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2436
Number of HSP's gapped (non-prelim): 75
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)