Query psy11162
Match_columns 91
No_of_seqs 101 out of 461
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 19:36:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_K DNA-directed RNA polyme 100.0 6.4E-40 2.2E-44 223.5 9.1 89 3-91 16-104 (123)
2 1twf_K B13.6, DNA-directed RNA 100.0 3.3E-39 1.1E-43 219.0 11.5 89 3-91 17-105 (120)
3 2pa8_L DNA-directed RNA polyme 100.0 2.8E-39 9.7E-44 210.4 9.8 86 6-91 2-87 (92)
4 1xpp_A TA1416, DNA-directed RN 100.0 1.6E-38 5.5E-43 214.4 10.1 88 3-91 9-96 (115)
5 2pa8_D DNA-directed RNA polyme 95.6 0.0086 2.9E-07 43.8 3.4 27 13-39 9-35 (265)
6 3h0g_C DNA-directed RNA polyme 95.5 0.0089 3.1E-07 45.2 3.4 42 1-42 1-43 (297)
7 1twf_C B44.5, DNA-directed RNA 95.2 0.0086 2.9E-07 45.6 2.3 29 10-38 11-39 (318)
8 1bdf_A RNA polymerase alpha su 94.1 0.022 7.7E-07 41.4 2.1 34 13-46 20-58 (235)
9 1twf_C B44.5, DNA-directed RNA 93.9 0.11 3.8E-06 39.4 5.8 37 54-90 225-261 (318)
10 1bdf_A RNA polymerase alpha su 93.9 0.047 1.6E-06 39.7 3.6 47 42-88 180-232 (235)
11 3lu0_A DNA-directed RNA polyme 93.7 0.062 2.1E-06 41.1 4.0 48 40-87 178-231 (329)
12 2a6h_A DNA-directed RNA polyme 93.7 0.09 3.1E-06 39.9 4.9 46 42-87 174-225 (315)
13 3lu0_A DNA-directed RNA polyme 91.8 0.063 2.1E-06 41.1 1.7 41 13-53 20-68 (329)
14 2a6h_A DNA-directed RNA polyme 91.7 0.069 2.3E-06 40.5 1.9 42 12-53 16-65 (315)
15 3h0g_C DNA-directed RNA polyme 90.3 0.2 7E-06 37.8 3.3 37 54-90 226-262 (297)
16 2pa8_D DNA-directed RNA polyme 90.3 0.59 2E-05 34.0 5.6 37 54-90 223-259 (265)
17 3ba3_A Protein LP_0091, pyrido 58.3 12 0.00041 24.9 3.9 32 30-62 52-83 (145)
18 1yz7_A Probable translation in 37.1 60 0.0021 22.5 4.8 47 38-87 121-167 (188)
19 4aq4_A SN-glycerol-3-phosphate 36.9 43 0.0015 23.7 4.1 27 64-90 390-416 (419)
20 2wkb_A Macrophage migration in 36.3 72 0.0025 19.7 4.8 26 57-82 1-28 (125)
21 4e17_B Catenin alpha-1; four h 35.9 33 0.0011 18.5 2.6 15 71-85 22-36 (40)
22 2yxb_A Coenzyme B12-dependent 35.8 78 0.0027 20.7 5.1 40 11-50 16-57 (161)
23 1t4b_A Aspartate-semialdehyde 33.8 1.5E+02 0.005 22.2 6.9 56 23-79 235-297 (367)
24 2qn6_B Translation initiation 33.8 25 0.00084 21.8 2.1 43 42-87 42-84 (93)
25 1p6f_A NKP46, natural cytotoxi 33.2 9 0.00031 26.2 0.0 13 24-36 228-240 (242)
26 1uct_A Immunoglobulin alpha FC 31.8 22 0.00076 23.6 1.8 23 13-35 188-213 (218)
27 2xcz_A Possible ATLS1-like lig 31.1 78 0.0027 19.1 4.2 26 57-82 2-28 (115)
28 3b64_A Macrophage migration in 31.0 89 0.003 18.8 4.6 26 57-82 1-27 (112)
29 1c1y_B Proto-onkogene serine/t 30.8 44 0.0015 20.3 2.9 20 59-78 14-33 (77)
30 3ezx_A MMCP 1, monomethylamine 30.2 91 0.0031 21.4 4.9 39 12-50 91-131 (215)
31 2r00_A Aspartate-semialdehyde 28.5 1.6E+02 0.0056 21.5 6.3 51 28-79 216-267 (336)
32 1pqx_A Conserved hypothetical 28.5 46 0.0016 20.6 2.8 40 8-48 18-57 (91)
33 2l05_A Serine/threonine-protei 27.8 51 0.0018 20.9 2.9 20 60-79 31-50 (95)
34 2i2x_B MTAC, methyltransferase 27.0 70 0.0024 22.5 3.9 41 12-52 122-164 (258)
35 3dhx_A Methionine import ATP-b 26.9 71 0.0024 19.5 3.5 38 15-52 65-102 (106)
36 1y80_A Predicted cobalamin bin 26.8 48 0.0016 22.3 2.8 40 12-51 87-128 (210)
37 3cra_A Protein MAZG; tandem-re 25.8 77 0.0026 23.3 4.0 24 66-89 211-234 (265)
38 2x4k_A 4-oxalocrotonate tautom 24.9 81 0.0028 16.3 4.3 27 56-82 3-31 (63)
39 4hs7_A Bacterial extracellular 24.2 69 0.0024 23.0 3.4 23 66-88 389-411 (420)
40 3ny5_A Serine/threonine-protei 23.7 68 0.0023 20.3 2.9 19 60-78 27-45 (96)
41 3u7z_A Putative metal binding 23.0 1.3E+02 0.0046 18.8 4.2 33 3-35 7-39 (101)
42 4e18_B Catenin alpha-1; four h 21.9 74 0.0025 18.5 2.6 15 71-85 41-55 (59)
43 1rrb_A RAF-1 RBD, RAF proto-on 21.9 75 0.0026 20.5 2.9 20 60-79 32-51 (107)
44 2hjs_A USG-1 protein homolog; 21.2 2.5E+02 0.0084 20.5 7.7 50 28-78 218-268 (340)
45 1wxm_A A-RAF proto-oncogene se 21.0 58 0.002 20.2 2.1 19 60-78 21-39 (86)
46 2al3_A TUG long isoform; TUG U 20.6 93 0.0032 19.3 3.0 23 58-80 21-43 (90)
47 1tke_A Threonyl-tRNA synthetas 20.3 1.8E+02 0.0063 19.7 4.9 52 26-80 73-127 (224)
48 3n94_A Fusion protein of malto 20.2 85 0.0029 23.2 3.3 25 65-89 355-379 (475)
No 1
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-40 Score=223.48 Aligned_cols=89 Identities=52% Similarity=0.863 Sum_probs=87.5
Q ss_pred eeeeeecCCCCCceEEEEEecCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCCeeEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy11162 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLA 82 (91)
Q Consensus 3 ~kv~~~~~~k~~n~~~~~i~~EdHTlgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~l~Iqt~~~~~p~~al~~a~~~l~~ 82 (91)
+||++..|+|++|+++|+|.||||||||+||++|+++|+|.||||+||||++++++|||||+++.+|.+||++|+++|++
T Consensus 16 ~Kv~~~~dtk~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~~~~~p~eaL~~al~~L~~ 95 (123)
T 3h0g_K 16 PKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLIT 95 (123)
T ss_dssp CSCCEEECSSSTTEEEEEEESCCSSHHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECCSSSCSHHHHHHHHHHHHH
T ss_pred cceEEecCCCCCceEEEEEeCCCcchHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q psy11162 83 ELSLFEERF 91 (91)
Q Consensus 83 ~~~~l~~~f 91 (91)
.|+.|++.|
T Consensus 96 ~~~~l~~~F 104 (123)
T 3h0g_K 96 HLEEIKVNF 104 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 2
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=100.00 E-value=3.3e-39 Score=219.01 Aligned_cols=89 Identities=49% Similarity=0.753 Sum_probs=87.3
Q ss_pred eeeeeecCCCCCceEEEEEecCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCCeeEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy11162 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLA 82 (91)
Q Consensus 3 ~kv~~~~~~k~~n~~~~~i~~EdHTlgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~l~Iqt~~~~~p~~al~~a~~~l~~ 82 (91)
+||+++.++|.+|+++|+|.||||||||+||++|+++|+|.||||+||||++++++|||||+|+.+|.+||++|+++|++
T Consensus 17 ~K~~~~~~~k~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT~~~~~p~eaL~~a~~~L~~ 96 (120)
T 1twf_K 17 SKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIIN 96 (120)
T ss_dssp CSCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSCTTSCEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEEeccCCCCeEEEEEeCCCchHHHHHHHHHhhCCCeeEEeeecCCCCCCccEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q psy11162 83 ELSLFEERF 91 (91)
Q Consensus 83 ~~~~l~~~f 91 (91)
.|+.++++|
T Consensus 97 ~~~~l~~~f 105 (120)
T 1twf_K 97 KLGALKTNF 105 (120)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 3
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=100.00 E-value=2.8e-39 Score=210.39 Aligned_cols=86 Identities=36% Similarity=0.518 Sum_probs=82.4
Q ss_pred eeecCCCCCceEEEEEecCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q psy11162 6 IKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELS 85 (91)
Q Consensus 6 ~~~~~~k~~n~~~~~i~~EdHTlgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~l~Iqt~~~~~p~~al~~a~~~l~~~~~ 85 (91)
.+...++.+|+++|+|.||||||||+||++|+++|+|.||||+||||++++++|||||+++.+|.+||++|+++|.+.|+
T Consensus 2 eikvi~k~~n~~~f~i~~EDHTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~ 81 (92)
T 2pa8_L 2 EIRILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTS 81 (92)
T ss_dssp EEEEEEEETTEEEEEEETCCHHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCeEEEEEecCchhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhC
Q psy11162 86 LFEERF 91 (91)
Q Consensus 86 ~l~~~f 91 (91)
.++++|
T Consensus 82 ~~~~~f 87 (92)
T 2pa8_L 82 HYIDEI 87 (92)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999876
No 4
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=100.00 E-value=1.6e-38 Score=214.45 Aligned_cols=88 Identities=20% Similarity=0.230 Sum_probs=85.9
Q ss_pred eeeeeecCCCCCceEEEEEecCCcchHHHHHHHHhcCCCeeeeeeeCCCCCCCeeEEEEEeCCCCCHHHHHHHHHHHHHH
Q psy11162 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLA 82 (91)
Q Consensus 3 ~kv~~~~~~k~~n~~~~~i~~EdHTlgNlLr~~L~~~~~V~fAgY~vpHPl~~~~~l~Iqt~~~~~p~~al~~a~~~l~~ 82 (91)
+|+.++.+++.+|+++|+|.+|||||||+||++|+++|+|.||||+|||||+++++|||||+|+. |.+||++|+++|.+
T Consensus 9 ~kmeiki~~k~~n~~~f~i~~EDHTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~-p~eaL~~al~~L~~ 87 (115)
T 1xpp_A 9 AESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGK-PQSAIKRAVRKLSK 87 (115)
T ss_dssp CCCEEEEEEECSSEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESSSC-HHHHHHHHHHHHHH
T ss_pred cceEEEEEcCCCCEEEEEEeCCCchhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCC-hHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred HHHHHHhhC
Q psy11162 83 ELSLFEERF 91 (91)
Q Consensus 83 ~~~~l~~~f 91 (91)
.|+.|++.|
T Consensus 88 ~~~~l~~~f 96 (115)
T 1xpp_A 88 LYEDLGTQF 96 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 5
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=95.62 E-value=0.0086 Score=43.84 Aligned_cols=27 Identities=11% Similarity=-0.064 Sum_probs=24.3
Q ss_pred CCceEEEEEecCCcchHHHHHHHHhcC
Q psy11162 13 VPNAAIFTVNKEDHTLGNMIRNQLLKD 39 (91)
Q Consensus 13 ~~n~~~~~i~~EdHTlgNlLr~~L~~~ 39 (91)
.++.+.|.+.|-|+||||+||-.|+..
T Consensus 9 ~~~~~~f~l~g~~~t~~NalRRills~ 35 (265)
T 2pa8_D 9 DDTRIDLVFEGYPLEFVNAIRRASMLY 35 (265)
T ss_dssp CSSEEEEEEESSCHHHHHHHHHHHHHS
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHc
Confidence 468999999999999999999998875
No 6
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=95.54 E-value=0.0089 Score=45.23 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=33.1
Q ss_pred CceeeeeecCCCCCceEEEEEecCCcchHHHHHHHHhcC-CCe
Q psy11162 1 MIRKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKD-PHV 42 (91)
Q Consensus 1 ~~~kv~~~~~~k~~n~~~~~i~~EdHTlgNlLr~~L~~~-~~V 42 (91)
|..|-++......++.+.|.+.|-|.||||+||-.|+.. |..
T Consensus 1 m~~~p~I~i~~~~~~~~~F~l~g~~~tiaNALRRiLLSeVPt~ 43 (297)
T 3h0g_C 1 MDSETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTV 43 (297)
T ss_dssp ---CCSBCCCCBCSSEEEEEECSCCHHHHHHHHHHHHSSCCEE
T ss_pred CCCCCeEEEEEccCCEEEEEEECCChhHHHHHHHHHHHcCccc
Confidence 566666777777889999999999999999999999885 543
No 7
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=95.22 E-value=0.0086 Score=45.59 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=18.5
Q ss_pred CCCCCceEEEEEecCCcchHHHHHHHHhc
Q psy11162 10 DTKVPNAAIFTVNKEDHTLGNMIRNQLLK 38 (91)
Q Consensus 10 ~~k~~n~~~~~i~~EdHTlgNlLr~~L~~ 38 (91)
....++.+.|.+.|-|+||||+||-.|+.
T Consensus 11 ~~~~~~~~kF~leG~~~tlaNALRRiLLS 39 (318)
T 1twf_C 11 REASKDNVDFILSNVDLAMANSLRRVMIA 39 (318)
T ss_dssp SCCCSSEECCEEBSSCHHHHHHHHHHHHH
T ss_pred EEecCCEEEEEEEccChhHHHHHHHHHHH
Confidence 33445666777777777777776666554
No 8
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=94.05 E-value=0.022 Score=41.44 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=23.2
Q ss_pred CCceEEEEEe----cCCcchHHHHHHHHhcC-CCeeeee
Q psy11162 13 VPNAAIFTVN----KEDHTLGNMIRNQLLKD-PHVLFAG 46 (91)
Q Consensus 13 ~~n~~~~~i~----~EdHTlgNlLr~~L~~~-~~V~fAg 46 (91)
.++.+.|.+. |-++|+||+||-.|+.. |+...-+
T Consensus 20 ~~~~~~F~l~Ple~G~~~tlgNaLRRiLLsevpg~AI~~ 58 (235)
T 1bdf_A 20 SSTHAKVTLEPLERGFGHTLGNALRAILLSSMPGCAVTE 58 (235)
T ss_dssp SSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred cCCEEEEEEEecCCCCchHHHHHHHHHHHhcCCceEEEE
Confidence 3577788885 88888888888777764 5544333
No 9
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=93.94 E-value=0.11 Score=39.43 Aligned_cols=37 Identities=8% Similarity=0.198 Sum_probs=33.8
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11162 54 EHKFILRIQTTAESTPHDALMNAITDLLAELSLFEER 90 (91)
Q Consensus 54 ~~~~~l~Iqt~~~~~p~~al~~a~~~l~~~~~~l~~~ 90 (91)
.++..|.|.|+|..+|.+||.+|++-|.+.|+.|.+.
T Consensus 225 ~dkfif~VET~Gsi~Peeav~~A~kIL~~kl~~f~~~ 261 (318)
T 1twf_C 225 ADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLA 261 (318)
T ss_dssp CCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999988653
No 10
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=93.91 E-value=0.047 Score=39.71 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=38.2
Q ss_pred eeeeeeeCCCC------CCCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11162 42 VLFAGYKQPHP------LEHKFILRIQTTAESTPHDALMNAITDLLAELSLFE 88 (91)
Q Consensus 42 V~fAgY~vpHP------l~~~~~l~Iqt~~~~~p~~al~~a~~~l~~~~~~l~ 88 (91)
|.-+.|++.-. -.++..|.|.|+|+.+|.+|+.+|++-|.+.|+.|.
T Consensus 180 v~~v~y~ve~~~v~~~~~~d~li~eIeT~Gsi~P~eal~~A~~iL~~~~~~f~ 232 (235)
T 1bdf_A 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 (235)
T ss_dssp EEEEEEECCBCCCSSCSSEEEEEEEEEECSSSCHHHHHHHHHHHHHHHGGGGC
T ss_pred EEEEEEEccCccccccccCcEEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 44567776422 236799999999999999999999999999988764
No 11
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=93.71 E-value=0.062 Score=41.14 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=38.0
Q ss_pred CCeeeeeeeCC-----CCC-CCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11162 40 PHVLFAGYKQP-----HPL-EHKFILRIQTTAESTPHDALMNAITDLLAELSLF 87 (91)
Q Consensus 40 ~~V~fAgY~vp-----HPl-~~~~~l~Iqt~~~~~p~~al~~a~~~l~~~~~~l 87 (91)
.=|.-+.|.|. ... .++..|.|.|+|+.+|.+|+..|++-|++.+..|
T Consensus 178 sPV~~Vny~Ve~~rvgq~td~dkL~leI~TdGsi~P~eAl~~Aa~iL~~~l~~f 231 (329)
T 3lu0_A 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 (329)
T ss_dssp CCEEEEEEEEEEECCSSCSCEEEEEEEEEECSSSCHHHHHHHHHHHHHHHTTTS
T ss_pred CceeeEEEEEeccccCCCcccceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33556777654 333 4789999999999999999999999999877654
No 12
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=93.67 E-value=0.09 Score=39.89 Aligned_cols=46 Identities=30% Similarity=0.338 Sum_probs=37.3
Q ss_pred eeeeeeeCC------CCCCCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11162 42 VLFAGYKQP------HPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLF 87 (91)
Q Consensus 42 V~fAgY~vp------HPl~~~~~l~Iqt~~~~~p~~al~~a~~~l~~~~~~l 87 (91)
|.-+.|.+. -.-.+...|.|.|+|+.+|.+|+.+|++-|.+.|..|
T Consensus 174 v~~v~y~ve~~rv~~~~~~dkli~eIeT~Gsi~P~eal~~A~~iL~~~l~~f 225 (315)
T 2a6h_A 174 VRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYF 225 (315)
T ss_dssp EEEEEEEEEECCBTTBCCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred ceeEEEEeeeeeecccccccEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445666553 1234789999999999999999999999999998876
No 13
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=91.77 E-value=0.063 Score=41.11 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=31.7
Q ss_pred CCceEEEEEe----cCCcchHHHHHHHHhcC-CCeeeeeee---CCCCC
Q psy11162 13 VPNAAIFTVN----KEDHTLGNMIRNQLLKD-PHVLFAGYK---QPHPL 53 (91)
Q Consensus 13 ~~n~~~~~i~----~EdHTlgNlLr~~L~~~-~~V~fAgY~---vpHPl 53 (91)
.++.+.|.+. |-++|+||+||-.|+.. |+...-+-+ +.|-+
T Consensus 20 ~~~~~kF~l~PlerG~g~TlgNaLRRvLLssvpg~AIt~V~I~gv~Hef 68 (329)
T 3lu0_A 20 SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDGVLHEY 68 (329)
T ss_dssp TTSEEEEEECCCCTTCHHHHHHHHHHHTTTSSCEEEEEEEEESSCSSTT
T ss_pred CCCEEEEEEEecCCCChhHHHHHHHHHHHhcCCceEEEEEEEeCccccc
Confidence 5799999999 99999999999999985 654444433 44543
No 14
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=91.74 E-value=0.069 Score=40.54 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=30.9
Q ss_pred CCCceEEEEEe----cCCcchHHHHHHHHhcC-CCeeeeee---eCCCCC
Q psy11162 12 KVPNAAIFTVN----KEDHTLGNMIRNQLLKD-PHVLFAGY---KQPHPL 53 (91)
Q Consensus 12 k~~n~~~~~i~----~EdHTlgNlLr~~L~~~-~~V~fAgY---~vpHPl 53 (91)
..++.+.|.+. |-++|+||+||-.|+.. |+...-+- .+.|-+
T Consensus 16 ~~~~~~~F~l~Ple~G~~~TlgNaLRRiLLsevpg~AI~~V~I~~v~He~ 65 (315)
T 2a6h_A 16 QGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEF 65 (315)
T ss_dssp ETTTEEEEEEEEECTTCHHHHHHHHHHHHHHTCEEEEEEEEEESSCCSTT
T ss_pred ccCCEEEEEEEccCCCchhHHHHHHHHHHHhcCCceEEEEEEEecchhcc
Confidence 34789999995 99999999999999885 54433332 255654
No 15
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=90.33 E-value=0.2 Score=37.75 Aligned_cols=37 Identities=11% Similarity=0.386 Sum_probs=34.0
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11162 54 EHKFILRIQTTAESTPHDALMNAITDLLAELSLFEER 90 (91)
Q Consensus 54 ~~~~~l~Iqt~~~~~p~~al~~a~~~l~~~~~~l~~~ 90 (91)
.++..|.|.|+|..+|.+++.+|++-|.+.++.|.+.
T Consensus 226 ~dkfif~VET~Gsl~p~eiv~~A~~iL~~kl~~f~~~ 262 (297)
T 3h0g_C 226 PRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRD 262 (297)
T ss_dssp CCCEEEEEEBCSSSCTTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999988753
No 16
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=90.25 E-value=0.59 Score=33.97 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=32.9
Q ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11162 54 EHKFILRIQTTAESTPHDALMNAITDLLAELSLFEER 90 (91)
Q Consensus 54 ~~~~~l~Iqt~~~~~p~~al~~a~~~l~~~~~~l~~~ 90 (91)
.+...+.|.|+|..+|.+++.+|++-|.+.++.|.+.
T Consensus 223 ~d~~i~~VEt~Gsl~Pee~v~~A~~iL~~~~~~~~~~ 259 (265)
T 2pa8_D 223 EDKYILEIESVGSLKPERILLEAGKSIIRKIEELEKK 259 (265)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999988764
No 17
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1}
Probab=58.34 E-value=12 Score=24.86 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCeeeeeeeCCCCCCCeeEEEEE
Q psy11162 30 NMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62 (91)
Q Consensus 30 NlLr~~L~~~~~V~fAgY~vpHPl~~~~~l~Iq 62 (91)
.---.+|.++|.|.|+++.-.-+- +..+||++
T Consensus 52 k~k~~ql~~Np~V~i~~~~~d~~~-~~~~IRi~ 83 (145)
T 3ba3_A 52 SPALKVYDQNPDIAFITIPNDGTA-GNPYLRAQ 83 (145)
T ss_dssp CTHHHHHTTCCEEEEEEEECTTCT-TCCEEEEE
T ss_pred CHHHHHHHhCCCEEEEEECCCCCc-cceEEEEE
Confidence 345678999999999999755443 46777776
No 18
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=37.06 E-value=60 Score=22.52 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=33.7
Q ss_pred cCCCeeeeeeeCCCCCCCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11162 38 KDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLF 87 (91)
Q Consensus 38 ~~~~V~fAgY~vpHPl~~~~~l~Iqt~~~~~p~~al~~a~~~l~~~~~~l 87 (91)
..+++..--|-|-=|+ -.|++++..-....++|++|++.+.+..+..
T Consensus 121 ~~~~~~ikI~lvgaP~---Y~i~~~~~Dkk~g~~~L~~aie~i~~~I~~~ 167 (188)
T 1yz7_A 121 KEKDVEVKFTYLGAPR---YRIDITAPDYYKAEEVLESIAEEILRVIKEA 167 (188)
T ss_dssp TSTTCEEEEEECSTTE---EEEEEEESSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEEEcCcE---EEEEEeeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466665566666665 6677877655567899999999988877653
No 19
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=36.93 E-value=43 Score=23.72 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11162 64 TAESTPHDALMNAITDLLAELSLFEER 90 (91)
Q Consensus 64 ~~~~~p~~al~~a~~~l~~~~~~l~~~ 90 (91)
.|+.+|.+||+++.+++.+.++++.+.
T Consensus 390 ~g~~t~e~al~~~~~~~~~~L~~y~k~ 416 (419)
T 4aq4_A 390 TGKKTPQQALDTAVERGNQLLRRFEKS 416 (419)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999888888877654
No 20
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=36.28 E-value=72 Score=19.74 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=17.6
Q ss_pred eEEEEEeCCCCCH--HHHHHHHHHHHHH
Q psy11162 57 FILRIQTTAESTP--HDALMNAITDLLA 82 (91)
Q Consensus 57 ~~l~Iqt~~~~~p--~~al~~a~~~l~~ 82 (91)
|.++|+|+.+.++ .++|.+++.++..
T Consensus 1 P~i~i~tn~~~s~~~~~~l~~~l~~ala 28 (125)
T 2wkb_A 1 PCCELITNISIPDDKAQNTLSEIEDAIS 28 (125)
T ss_dssp CEEEEEESCCCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHH
Confidence 4688999877776 4666666665544
No 21
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=35.88 E-value=33 Score=18.54 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy11162 71 DALMNAITDLLAELS 85 (91)
Q Consensus 71 ~al~~a~~~l~~~~~ 85 (91)
.|++.|+++|.+++.
T Consensus 22 navrqALQdLlseY~ 36 (40)
T 4e17_B 22 NAVRQALQDLLSEYM 36 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 578888888887753
No 22
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=35.78 E-value=78 Score=20.72 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=28.8
Q ss_pred CCCCceEEEEEecCCcchHHHHHHHHhcCCC--eeeeeeeCC
Q psy11162 11 TKVPNAAIFTVNKEDHTLGNMIRNQLLKDPH--VLFAGYKQP 50 (91)
Q Consensus 11 ~k~~n~~~~~i~~EdHTlgNlLr~~L~~~~~--V~fAgY~vp 50 (91)
.+.+..+..++.++.|++|-.+...+++..+ |.+-|-.+|
T Consensus 16 ~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p 57 (161)
T 2yxb_A 16 RRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQT 57 (161)
T ss_dssp CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCC
T ss_pred CCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 3556778889999999999888888887753 344444443
No 23
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=33.78 E-value=1.5e+02 Score=22.17 Aligned_cols=56 Identities=7% Similarity=-0.102 Sum_probs=42.0
Q ss_pred cCCcc-----hHHHHHHHHh--cCCCeeeeeeeCCCCCCCeeEEEEEeCCCCCHHHHHHHHHHH
Q psy11162 23 KEDHT-----LGNMIRNQLL--KDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITD 79 (91)
Q Consensus 23 ~EdHT-----lgNlLr~~L~--~~~~V~fAgY~vpHPl~~~~~l~Iqt~~~~~p~~al~~a~~~ 79 (91)
+..|| +.+-++..|- ..-.|.|...++|-+--.-..+.+++++..++ +.+++++++
T Consensus 235 ~~~~t~EE~k~~~e~~kil~~~~~~~v~~t~vrVPv~~g~~~~v~v~l~~~~t~-eei~~~l~~ 297 (367)
T 1t4b_A 235 DNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSI-PTVEELLAA 297 (367)
T ss_dssp TTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCH-HHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHhCcCCCceEEEEEEEcCccceEEEEEEEEECCCCCH-HHHHHHHHh
Confidence 44566 8888998875 34479999999999988888899999877655 445555543
No 24
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=33.76 E-value=25 Score=21.85 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=29.5
Q ss_pred eeeeeeeCCCCCCCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11162 42 VLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITDLLAELSLF 87 (91)
Q Consensus 42 V~fAgY~vpHPl~~~~~l~Iqt~~~~~p~~al~~a~~~l~~~~~~l 87 (91)
|..--|-+-=|+ -.|++++..-....++|++|++.+.+..+..
T Consensus 42 ~~vkI~~vgaP~---Y~i~~~~~D~k~ge~~L~~ai~~i~~~i~~~ 84 (93)
T 2qn6_B 42 LNIKIYTIGAPR---YRVDVVGTNPKEASEALNQIISNLIKIGKEE 84 (93)
T ss_dssp EEEEEEESSTTE---EEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEcCCe---EEEEEEecCHHHHHHHHHHHHHHHHHHHHHh
Confidence 335556666665 6677777654467788899988888877653
No 25
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=33.17 E-value=9 Score=26.23 Aligned_cols=13 Identities=46% Similarity=0.555 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHH
Q psy11162 24 EDHTLGNMIRNQL 36 (91)
Q Consensus 24 EdHTlgNlLr~~L 36 (91)
.|||++||+|..|
T Consensus 228 ~~~~~~nl~r~~~ 240 (242)
T 1p6f_A 228 WDHTAQNLLRMGL 240 (242)
T ss_dssp -------------
T ss_pred ccchheeeeEEEe
Confidence 4999999998765
No 26
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=31.78 E-value=22 Score=23.55 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=6.8
Q ss_pred CCceEEEEEec---CCcchHHHHHHH
Q psy11162 13 VPNAAIFTVNK---EDHTLGNMIRNQ 35 (91)
Q Consensus 13 ~~n~~~~~i~~---EdHTlgNlLr~~ 35 (91)
..+.+++.+.| -|+|.+|++|+.
T Consensus 188 ~S~~~~l~V~g~~~~~~t~~n~~~~~ 213 (218)
T 1uct_A 188 PSNALELVVTDSIHQDYTTQNLILEH 213 (218)
T ss_dssp CCCCEEEEEC----------------
T ss_pred CCCcEEEEEecCCCcCCChhhhhhhh
Confidence 34667788876 699999999864
No 27
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=31.14 E-value=78 Score=19.09 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=16.8
Q ss_pred eEEEEEeCCCCCH-HHHHHHHHHHHHH
Q psy11162 57 FILRIQTTAESTP-HDALMNAITDLLA 82 (91)
Q Consensus 57 ~~l~Iqt~~~~~p-~~al~~a~~~l~~ 82 (91)
|.++|+|..+.++ .++|.+++.++..
T Consensus 2 P~i~i~~~~~~~~~~~~l~~~~~~~l~ 28 (115)
T 2xcz_A 2 PLINIQASVPAVADANSLLQELSSKLA 28 (115)
T ss_dssp CEEEEEESSCCCTTHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCchhHHHHHHHHHHHHH
Confidence 5688888765555 5666666665544
No 28
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=31.01 E-value=89 Score=18.77 Aligned_cols=26 Identities=0% Similarity=0.009 Sum_probs=16.8
Q ss_pred eEEEEEeCCCCCH-HHHHHHHHHHHHH
Q psy11162 57 FILRIQTTAESTP-HDALMNAITDLLA 82 (91)
Q Consensus 57 ~~l~Iqt~~~~~p-~~al~~a~~~l~~ 82 (91)
|.++|+|..+.++ .++|.+++.++..
T Consensus 1 P~i~i~tn~~~~~~~~~l~~~~~~~l~ 27 (112)
T 3b64_A 1 PVIQTFVSTPLDHHKRENLAQVYRAVT 27 (112)
T ss_dssp CEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCchhHHHHHHHHHHHHH
Confidence 4688999877666 4556555555443
No 29
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=30.81 E-value=44 Score=20.35 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=16.5
Q ss_pred EEEEeCCCCCHHHHHHHHHH
Q psy11162 59 LRIQTTAESTPHDALMNAIT 78 (91)
Q Consensus 59 l~Iqt~~~~~p~~al~~a~~ 78 (91)
=+|+...|.+..+||.+|++
T Consensus 14 T~V~VrpG~tlrdaL~KaLk 33 (77)
T 1c1y_B 14 TVVNVRNGMSLHDCLMKALK 33 (77)
T ss_dssp EEEECCTTCBHHHHHHHHHH
T ss_pred EEEEecCCcCHHHHHHHHHH
Confidence 35667788899999999986
No 30
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=30.19 E-value=91 Score=21.43 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=28.7
Q ss_pred CCCceEEEEEecCCcchHHHHHHHHhcCCC--eeeeeeeCC
Q psy11162 12 KVPNAAIFTVNKEDHTLGNMIRNQLLKDPH--VLFAGYKQP 50 (91)
Q Consensus 12 k~~n~~~~~i~~EdHTlgNlLr~~L~~~~~--V~fAgY~vp 50 (91)
+.+.-+..++.||-|.+|-.+...+++..+ |.+-|-.+|
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp 131 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVL 131 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCC
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCC
Confidence 345667778899999999999999998765 344455554
No 31
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*
Probab=28.51 E-value=1.6e+02 Score=21.47 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=39.0
Q ss_pred hHHHHHHHHhc-CCCeeeeeeeCCCCCCCeeEEEEEeCCCCCHHHHHHHHHHH
Q psy11162 28 LGNMIRNQLLK-DPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAITD 79 (91)
Q Consensus 28 lgNlLr~~L~~-~~~V~fAgY~vpHPl~~~~~l~Iqt~~~~~p~~al~~a~~~ 79 (91)
+.+-++..|-. +-.|.|...++|-+--.-..+.++++...+. +.+.+++++
T Consensus 216 ~~~e~~kil~~~~~~v~~t~~rVP~~~g~~~~~~~~l~~~~t~-~ei~~~~~~ 267 (336)
T 2r00_A 216 MVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAPIDA-EQVMDMLEQ 267 (336)
T ss_dssp HHHHHHHHTTCTTCEEEEEEEEESSCBSEEEEEEEEESSCCCH-HHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEeEEeccCcEEEEEEEEEeCCCCCH-HHHHHHHHh
Confidence 66777777643 4579999999999998889999999877666 445666654
No 32
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=28.51 E-value=46 Score=20.57 Aligned_cols=40 Identities=20% Similarity=-0.029 Sum_probs=28.3
Q ss_pred ecCCCCCceEEEEEecCCcchHHHHHHHHhcCCCeeeeeee
Q psy11162 8 ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYK 48 (91)
Q Consensus 8 ~~~~k~~n~~~~~i~~EdHTlgNlLr~~L~~~~~V~fAgY~ 48 (91)
..+.......+..|.+.+ .-...|...|...|+|+=.-|.
T Consensus 18 ~~~~~l~~g~s~~F~~~~-a~~SPLA~~LF~i~gVk~Vf~g 57 (91)
T 1pqx_A 18 TLSESREGMTSDTYTKVD-DSQPAFINDILKVEGVKSIFHV 57 (91)
T ss_dssp ECSCCSSCCCCEEESSSC-SSCCHHHHHHHHSTTEEEEEEE
T ss_pred eCCcCcCCCCceEeCCcc-ccCCHHHHHhhCCCCeeEEEEe
Confidence 334344444466777777 7789999999999999855554
No 33
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=27.79 E-value=51 Score=20.87 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=16.6
Q ss_pred EEEeCCCCCHHHHHHHHHHH
Q psy11162 60 RIQTTAESTPHDALMNAITD 79 (91)
Q Consensus 60 ~Iqt~~~~~p~~al~~a~~~ 79 (91)
.|+...|.+..+||.+|++.
T Consensus 31 ~V~VrpG~tlrdAL~KaLk~ 50 (95)
T 2l05_A 31 VVPARCGVTVRDSLKKALMM 50 (95)
T ss_dssp EEECCTTCBHHHHHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHHH
Confidence 46677889999999999864
No 34
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=26.97 E-value=70 Score=22.49 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=32.2
Q ss_pred CCCceEEEEEecCCcchHHHHHHHHhcCCC--eeeeeeeCCCC
Q psy11162 12 KVPNAAIFTVNKEDHTLGNMIRNQLLKDPH--VLFAGYKQPHP 52 (91)
Q Consensus 12 k~~n~~~~~i~~EdHTlgNlLr~~L~~~~~--V~fAgY~vpHP 52 (91)
..+.-+..+..||-|++|-.+-..++++.+ |.+-|..+|..
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e 164 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAE 164 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 345677889999999999999888888764 55788887654
No 35
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=26.92 E-value=71 Score=19.55 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=30.5
Q ss_pred ceEEEEEecCCcchHHHHHHHHhcCCCeeeeeeeCCCC
Q psy11162 15 NAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHP 52 (91)
Q Consensus 15 n~~~~~i~~EdHTlgNlLr~~L~~~~~V~fAgY~vpHP 52 (91)
-.+.+.+.|++--+..++.+.-.+.=.|+..||-..|-
T Consensus 65 G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl~~~~~~~ 102 (106)
T 3dhx_A 65 GIMLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYVLEHH 102 (106)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEEC--
T ss_pred EEEEEEEeCCHHHHHHHHHHHHHCCCEEEEeeeeeecc
Confidence 45678889988888888888877888899999998873
No 36
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.82 E-value=48 Score=22.30 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=28.6
Q ss_pred CCCceEEEEEecCCcchHHHHHHHHhcCCC--eeeeeeeCCC
Q psy11162 12 KVPNAAIFTVNKEDHTLGNMIRNQLLKDPH--VLFAGYKQPH 51 (91)
Q Consensus 12 k~~n~~~~~i~~EdHTlgNlLr~~L~~~~~--V~fAgY~vpH 51 (91)
..+.-+..+..||-|++|-.+-..+++..+ |.+-|..+|.
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~ 128 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEP 128 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 344677888999999999888888877654 4455655543
No 37
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=25.83 E-value=77 Score=23.28 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Q psy11162 66 ESTPHDALMNAITDLLAELSLFEE 89 (91)
Q Consensus 66 ~~~p~~al~~a~~~l~~~~~~l~~ 89 (91)
+++|..||++|.......|..+++
T Consensus 211 gIDpE~ALr~an~KF~~Rf~~~E~ 234 (265)
T 3cra_A 211 GTKAEIALQKANEKFERRFREVER 234 (265)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999998875
No 38
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=24.92 E-value=81 Score=16.32 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=15.8
Q ss_pred eeEEEEEeCCCCCH--HHHHHHHHHHHHH
Q psy11162 56 KFILRIQTTAESTP--HDALMNAITDLLA 82 (91)
Q Consensus 56 ~~~l~Iqt~~~~~p--~~al~~a~~~l~~ 82 (91)
.|.++|++.++.++ ..+|.+++.++..
T Consensus 3 MP~i~i~~~~g~s~e~k~~l~~~l~~~l~ 31 (63)
T 2x4k_A 3 MPIVNVKLLEGRSDEQLKNLVSEVTDAVE 31 (63)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 35678887666666 3455555554443
No 39
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=24.22 E-value=69 Score=23.02 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy11162 66 ESTPHDALMNAITDLLAELSLFE 88 (91)
Q Consensus 66 ~~~p~~al~~a~~~l~~~~~~l~ 88 (91)
+.+|.+||.+|.+.+.+.++.+.
T Consensus 389 g~~~~~al~~a~~~i~~~ika~~ 411 (420)
T 4hs7_A 389 GKNPKQALDEATNDITQNIKILH 411 (420)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHhhh
Confidence 45999999999999999888764
No 40
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=23.69 E-value=68 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=16.0
Q ss_pred EEEeCCCCCHHHHHHHHHH
Q psy11162 60 RIQTTAESTPHDALMNAIT 78 (91)
Q Consensus 60 ~Iqt~~~~~p~~al~~a~~ 78 (91)
.|+...|.+..+||.+|++
T Consensus 27 ~V~VrpG~tlrdaL~KaLk 45 (96)
T 3ny5_A 27 VVPARCGVTVRDSLKKALM 45 (96)
T ss_dssp EEECCTTCBHHHHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHH
Confidence 4666778899999999986
No 41
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=23.02 E-value=1.3e+02 Score=18.77 Aligned_cols=33 Identities=12% Similarity=0.315 Sum_probs=24.3
Q ss_pred eeeeeecCCCCCceEEEEEecCCcchHHHHHHH
Q psy11162 3 RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQ 35 (91)
Q Consensus 3 ~kv~~~~~~k~~n~~~~~i~~EdHTlgNlLr~~ 35 (91)
|++++.........-.|++.-+..||+.+|...
T Consensus 7 k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~ 39 (101)
T 3u7z_A 7 KHITVTVIHGDQTENVFEFDTDAKYLGEVLESE 39 (101)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCSBHHHHHHHT
T ss_pred eEEEEEEEcCCCceeEEEEcCCccHHHHHHHHc
Confidence 455665555556677788889999999999654
No 42
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=21.89 E-value=74 Score=18.47 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy11162 71 DALMNAITDLLAELS 85 (91)
Q Consensus 71 ~al~~a~~~l~~~~~ 85 (91)
.++..|+++|..++.
T Consensus 41 navrqALQdLlsEY~ 55 (59)
T 4e18_B 41 NAVRQALQDLLSEYM 55 (59)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 577888888877653
No 43
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=21.89 E-value=75 Score=20.50 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.2
Q ss_pred EEEeCCCCCHHHHHHHHHHH
Q psy11162 60 RIQTTAESTPHDALMNAITD 79 (91)
Q Consensus 60 ~Iqt~~~~~p~~al~~a~~~ 79 (91)
+|+...|.+..+||.+|++.
T Consensus 32 ~V~VrpG~tlrdaL~KaLk~ 51 (107)
T 1rrb_A 32 VVNVRNGMSLHDCLMKALKV 51 (107)
T ss_dssp EEECCTTCBHHHHHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHHH
Confidence 45666788999999999863
No 44
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Probab=21.23 E-value=2.5e+02 Score=20.53 Aligned_cols=50 Identities=8% Similarity=0.039 Sum_probs=39.4
Q ss_pred hHHHHHHHHh-cCCCeeeeeeeCCCCCCCeeEEEEEeCCCCCHHHHHHHHHH
Q psy11162 28 LGNMIRNQLL-KDPHVLFAGYKQPHPLEHKFILRIQTTAESTPHDALMNAIT 78 (91)
Q Consensus 28 lgNlLr~~L~-~~~~V~fAgY~vpHPl~~~~~l~Iqt~~~~~p~~al~~a~~ 78 (91)
+.+-++..|- .+-.|.|...++|-|--.-..+.++++...+. +.+.++++
T Consensus 218 ~~~~~~kil~~~~~~v~~~~~rVP~~~g~~~~~~~~l~~~~t~-eei~~~~~ 268 (340)
T 2hjs_A 218 IFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDL-AAVTRVLD 268 (340)
T ss_dssp HHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCH-HHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEeEEcCcCceEEEEEEEEECCCCCH-HHHHHHHh
Confidence 8888888775 34579999999999998899999999877655 55556654
No 45
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.00 E-value=58 Score=20.23 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=15.8
Q ss_pred EEEeCCCCCHHHHHHHHHH
Q psy11162 60 RIQTTAESTPHDALMNAIT 78 (91)
Q Consensus 60 ~Iqt~~~~~p~~al~~a~~ 78 (91)
.|+...|.+..+||.+|++
T Consensus 21 ~V~VrpG~tlrdaL~KaLk 39 (86)
T 1wxm_A 21 VVTVRDGMSVYDSLDKALK 39 (86)
T ss_dssp EEECCSSCBSHHHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHH
Confidence 4566778899999999986
No 46
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=20.59 E-value=93 Score=19.30 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=17.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Q psy11162 58 ILRIQTTAESTPHDALMNAITDL 80 (91)
Q Consensus 58 ~l~Iqt~~~~~p~~al~~a~~~l 80 (91)
..+|++..+....++|++||+..
T Consensus 21 r~~VKvtp~t~L~~VL~eaC~K~ 43 (90)
T 2al3_A 21 RHTVKVTPSTVLLQVLEDTCRRQ 43 (90)
T ss_dssp EEEECCCTTSBHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHh
Confidence 34566666778999999999864
No 47
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=20.34 E-value=1.8e+02 Score=19.71 Aligned_cols=52 Identities=15% Similarity=0.303 Sum_probs=31.9
Q ss_pred cchHHHHHHHHhc-CCCeeeeeeeCCCCCCCeeEEEEEeCCCCCHH--HHHHHHHHHH
Q psy11162 26 HTLGNMIRNQLLK-DPHVLFAGYKQPHPLEHKFILRIQTTAESTPH--DALMNAITDL 80 (91)
Q Consensus 26 HTlgNlLr~~L~~-~~~V~fAgY~vpHPl~~~~~l~Iqt~~~~~p~--~al~~a~~~l 80 (91)
||...+|...+.+ .|++.+ .+-|++.+-....+......++. +.+++-+.++
T Consensus 73 HS~~HlL~~A~~~~~~~~~~---~~g~~~~~g~y~d~~~~~~~t~edl~~IE~~m~~i 127 (224)
T 1tke_A 73 HSCAHLLGHAIKQLWPHTKM---AIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHEL 127 (224)
T ss_dssp HHHHHHHHHHHHHHSTTCEE---CCCCEETTEEEEEEECSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcEE---EECCccCCeEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7888899888877 355433 34566677777777655555553 3344444333
No 48
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=20.20 E-value=85 Score=23.21 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11162 65 AESTPHDALMNAITDLLAELSLFEE 89 (91)
Q Consensus 65 ~~~~p~~al~~a~~~l~~~~~~l~~ 89 (91)
|+.+|.+|++++.+.+.+.+..+++
T Consensus 355 G~~t~eeal~~~~~~~~~~l~~l~~ 379 (475)
T 3n94_A 355 GRQTVDEALKDAQTNAAAEFAIFKK 379 (475)
T ss_dssp TSSCHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5569999999999888887777664
Done!