RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11162
         (91 letters)



>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 114

 Score =  107 bits (269), Expect = 1e-32
 Identities = 44/89 (49%), Positives = 54/89 (60%)

Query: 3   RKIIKELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQ 62
            K+  + DTK PNA + T  KEDHTLGN+IR +LL D  VLFA YK  HP   +F LRIQ
Sbjct: 17  SKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQ 76

Query: 63  TTAESTPHDALMNAITDLLAELSLFEERF 91
           TT    P DAL NA   ++ +L   +  F
Sbjct: 77  TTEGYDPKDALKNACNSIINKLGALKTNF 105


>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 99

 Score = 87.6 bits (217), Expect = 6e-25
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 8  ELDTKVPNAAIFTVNKEDHTLGNMIRNQLLKDPHVLFAGYKQPHPLEHKFILRIQTTAES 67
           + +K  N+    +   D+TL   +  ++LKD  V  A Y   HP+     + ++     
Sbjct: 6  RVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVK-SG 64

Query: 68 TPHDALMNAITDLLAELSLFEERF 91
           P  A+  A+  L         +F
Sbjct: 65 KPQSAIKRAVRKLSKLYEDLGTQF 88


>d1smya1 d.74.3.1 (A:1-49,A:173-229) RNA polymerase alpha {Thermus
           thermophilus [TaxId: 274]}
          Length = 106

 Score = 27.6 bits (61), Expect = 0.13
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 13/94 (13%)

Query: 6   IKELDTKVPNAAIFTVNKED----HTLGNMIRNQLLKD-PHVLFAGYK-------QPHPL 53
           +  + T+      F +   +     TLGN +R  LL   P V    ++       Q   L
Sbjct: 10  VFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPPVRRVAFQVEDTRLGQRTDL 69

Query: 54  EHKFILRIQTTAESTPHDALMNAITDLLAELSLF 87
           +    LRI T    TP +AL  A+  L   L+ F
Sbjct: 70  DK-LTLRIWTDGSVTPLEALNQAVEILREHLTYF 102


>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha
           {Escherichia coli [TaxId: 562]}
          Length = 105

 Score = 25.6 bits (56), Expect = 0.65
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 19/95 (20%)

Query: 8   ELDTKVPNAAIFTVNKED----HTLGNMIRNQLLKDPHVLFAGYKQPHPLEH-------- 55
           +++      A  T+   +    HTLGN +R  LL          ++              
Sbjct: 14  DIEQVSSTHAKVTLEPLERGFGHTLGNALRAILLSS----MPPVERIAYNVEAARVEQRT 69

Query: 56  ---KFILRIQTTAESTPHDALMNAITDLLAELSLF 87
              K ++ ++T     P +A+  A T L  +L  F
Sbjct: 70  DLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 323,228
Number of extensions: 12603
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 5
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)