Query psy11163
Match_columns 148
No_of_seqs 150 out of 1027
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:37:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 4.2E-41 9.2E-46 308.1 7.7 139 2-144 445-599 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 7.5E-41 1.6E-45 300.9 8.6 135 2-140 479-627 (821)
3 cd01384 MYSc_type_XI Myosin mo 100.0 1.8E-40 4E-45 294.0 8.8 135 2-140 384-531 (674)
4 cd01381 MYSc_type_VII Myosin m 100.0 3.7E-40 8E-45 292.1 9.7 136 2-141 379-528 (671)
5 cd01387 MYSc_type_XV Myosin mo 100.0 3.4E-40 7.3E-45 292.6 9.0 135 2-140 378-525 (677)
6 cd01385 MYSc_type_IX Myosin mo 100.0 4.5E-40 9.7E-45 292.3 8.8 134 2-139 394-540 (692)
7 cd01382 MYSc_type_VI Myosin mo 100.0 3.7E-40 7.9E-45 293.8 8.1 136 2-141 414-572 (717)
8 cd01378 MYSc_type_I Myosin mot 100.0 5.4E-40 1.2E-44 291.2 8.5 135 2-140 383-532 (674)
9 cd01383 MYSc_type_VIII Myosin 100.0 1.5E-39 3.2E-44 288.4 8.6 133 2-139 382-525 (677)
10 cd01380 MYSc_type_V Myosin mot 100.0 1.2E-39 2.7E-44 289.6 7.9 134 2-140 385-533 (691)
11 cd01377 MYSc_type_II Myosin mo 100.0 2.5E-39 5.5E-44 287.7 9.0 135 2-140 391-541 (693)
12 smart00242 MYSc Myosin. Large 100.0 5.3E-39 1.1E-43 285.2 8.7 136 2-141 386-535 (677)
13 cd00124 MYSc Myosin motor doma 100.0 1.6E-38 3.4E-43 282.4 7.5 135 2-140 379-527 (679)
14 cd01379 MYSc_type_III Myosin m 100.0 1.1E-37 2.4E-42 275.5 7.9 130 2-137 390-531 (653)
15 cd01386 MYSc_type_XVIII Myosin 100.0 1.2E-36 2.6E-41 272.6 8.0 135 2-140 396-567 (767)
16 PF00063 Myosin_head: Myosin h 100.0 6.9E-37 1.5E-41 272.0 5.7 136 2-141 381-535 (689)
17 KOG0164|consensus 100.0 1.4E-36 3E-41 264.2 6.9 137 2-142 392-549 (1001)
18 KOG0161|consensus 100.0 8E-35 1.7E-39 275.3 7.3 134 1-139 464-614 (1930)
19 KOG0162|consensus 100.0 1.1E-32 2.5E-37 240.4 6.1 136 2-141 400-550 (1106)
20 KOG0163|consensus 100.0 1.6E-31 3.4E-36 233.9 7.7 136 2-141 468-626 (1259)
21 KOG0160|consensus 100.0 3E-30 6.6E-35 230.9 7.4 132 2-138 385-529 (862)
22 KOG4229|consensus 99.9 1.1E-25 2.5E-30 205.5 4.6 133 2-138 444-590 (1062)
23 smart00394 RIIa RIIalpha, Regu 20.7 83 0.0018 17.3 1.7 13 4-17 23-35 (38)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=4.2e-41 Score=308.09 Aligned_cols=139 Identities=36% Similarity=0.571 Sum_probs=126.8
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhc-CCCccceechhhhhcCCCCCcchhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANWSRGNPMVSCV 80 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~-~p~Gll~iLDee~~~p~~td~t~~~ 80 (148)
||||||||||||+|||.|++|+|+.||++|.+|||+|.+|+|.||++|||||++ +|.|||++|||||..|.+||++|..
T Consensus 445 SFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~s 524 (1463)
T COG5022 445 SFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTS 524 (1463)
T ss_pred cHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHH
Confidence 799999999999999999999999999999999999999999999999999997 4789999999999999999999987
Q ss_pred hhhhCCC---C------------CCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccccccc
Q psy11163 81 FWMIKPT---G------------RGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEAESIE 144 (148)
Q Consensus 81 ~~~~k~~---~------------~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~~~~~ 144 (148)
++..... + .-.+||||+|+|+++||+ |||+|.++.++.+||++|+|.||+.||++.+.|+
T Consensus 525 KL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~l----dKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~ 599 (1463)
T COG5022 525 KLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFL----DKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE 599 (1463)
T ss_pred HHHHHhccccCccccccccCCCceEEEeecccceeeccchh----hhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc
Confidence 6543211 1 124799999999999999 8999999999999999999999999999777665
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=7.5e-41 Score=300.90 Aligned_cols=135 Identities=24% Similarity=0.228 Sum_probs=124.9
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
||||||||||||+||++|++++|..|+++|.+|||.|..++|.||++|||||+++|.|||++|||||++|++||++|+.+
T Consensus 479 SfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~k 558 (821)
T PTZ00014 479 SLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSS 558 (821)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhC---------CC-----CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 82 WMIK---------PT-----GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 82 ~~~k---------~~-----~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
+... ++ ...+.||||+|+|+++||+ +||+|.|..+++++|++|+|++|+.||++.
T Consensus 559 l~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfl----eKNkD~l~~~~~~ll~~S~n~~i~~lf~~~ 627 (821)
T PTZ00014 559 CNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFL----FKNKDVLRPELVEVVKASPNPLVRDLFEGV 627 (821)
T ss_pred HHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHH----HhccccchHHHHHHHHhCccHHHHHHhccc
Confidence 5432 21 1235799999999999999 888999999999999999999999999864
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.8e-40 Score=294.01 Aligned_cols=135 Identities=33% Similarity=0.470 Sum_probs=125.1
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
||||||||||||+||++|++++|..|+++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|+.+
T Consensus 384 sfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~k 463 (674)
T cd01384 384 SFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQK 463 (674)
T ss_pred CHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhCCC-------------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 82 WMIKPT-------------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 82 ~~~k~~-------------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
+..+.+ ...++||||+|+|+++||+ +||+|.++++++++|+.|+|++|+.||+..
T Consensus 464 l~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfl----eKN~D~l~~~~~~ll~~S~n~~i~~lf~~~ 531 (674)
T cd01384 464 LYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQFL----DKNKDYVVAEHQALLNASNCSFVAGLFPPL 531 (674)
T ss_pred HHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCHH----HhcCCcccHHHHHHHHhCchHHHHHHhccc
Confidence 543211 1245899999999999999 888999999999999999999999999864
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=3.7e-40 Score=292.08 Aligned_cols=136 Identities=33% Similarity=0.566 Sum_probs=125.3
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
|||||||||||||||++|++++|..|+++|.+|||.|..++|.||++||+||+++|.|||++|||||++|++||++|+.+
T Consensus 379 sfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~k 458 (671)
T cd01381 379 SFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEK 458 (671)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhh---------CCC-----CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhccccc
Q psy11163 82 WMI---------KPT-----GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEAE 141 (148)
Q Consensus 82 ~~~---------k~~-----~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~~ 141 (148)
+.. +++ ...++||||+|+|+++||+ +||+|.++++++++|+.|+|++|+.||+...
T Consensus 459 l~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfl----eKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~ 528 (671)
T cd01381 459 LHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFL----EKNRDTFSGDLSQLVQSSKNKFLKQIFQADV 528 (671)
T ss_pred HHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHH----HhccchhhHHHHHHHHhChHHHHHHHhcccc
Confidence 532 221 1245899999999999999 8888999999999999999999999998653
No 5
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=3.4e-40 Score=292.56 Aligned_cols=135 Identities=34% Similarity=0.486 Sum_probs=124.8
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
|||||||||||||||++|++++|..|+++|.+|||+|..++|.||++|++||+++|.|||++|||||++|++||++|+.+
T Consensus 378 sfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~k 457 (677)
T cd01387 378 SFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQK 457 (677)
T ss_pred CHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hhh---------CCC----CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 82 WMI---------KPT----GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 82 ~~~---------k~~----~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
+.. +++ ...++||||+|+|+++||+ +||+|.+.++++++|+.|+|++|..||+..
T Consensus 458 l~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfl----eKN~D~l~~~~~~ll~~S~~~~i~~lf~~~ 525 (677)
T cd01387 458 CHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFL----DKNHDQVRQDVLDLFVSSRTRVVAHLFSSH 525 (677)
T ss_pred HHHhccCCccccCCCCCCCeeEEEEeCceeeecCCChH----HhccchhhHHHHHHHHhCCcHHHHHHHhhh
Confidence 532 222 1246899999999999999 888899999999999999999999999764
No 6
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=4.5e-40 Score=292.33 Aligned_cols=134 Identities=35% Similarity=0.578 Sum_probs=124.0
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
|||||||||||||||++|++++|..|+++|.+|||.|..++|.||++||+||+++|.|||++|||||++|++||++|+.+
T Consensus 394 sfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~k 473 (692)
T cd01385 394 SFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAK 473 (692)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhCCCC-------------CCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhccc
Q psy11163 82 WMIKPTG-------------RGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIE 139 (148)
Q Consensus 82 ~~~k~~~-------------~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~ 139 (148)
+....++ ..++||||+|+|+++||+ +||+|.|.++++++|++|+|++|+.||..
T Consensus 474 l~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfl----eKN~D~l~~~~~~ll~~S~n~~i~~lf~~ 540 (692)
T cd01385 474 FNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFR----EKNMDLMRQDIVALLKGSDSSYVRELIGM 540 (692)
T ss_pred HHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHH----HhccccccHHHHHHHHhCccHHHHHHhcc
Confidence 5432211 235799999999999999 88899999999999999999999999964
No 7
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=3.7e-40 Score=293.80 Aligned_cols=136 Identities=28% Similarity=0.462 Sum_probs=125.0
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
|||||||||||||||++|++++|..|+++|.+|||+|..++|.||++|++||+++|.|||++|||||++|++||++|+.+
T Consensus 414 sfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~tD~~f~~k 493 (717)
T cd01382 414 SFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSV 493 (717)
T ss_pred CHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhhC---------C--------------CCCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcc
Q psy11163 82 WMIK---------P--------------TGRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLI 138 (148)
Q Consensus 82 ~~~k---------~--------------~~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~ 138 (148)
+... + ....++||||+|+|+++||+ +||+|.+..+++++|+.|+|++|+.||.
T Consensus 494 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfl----eKNkD~l~~~~~~ll~~S~n~~i~~lf~ 569 (717)
T cd01382 494 VHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFV----EKNNDALHMSLESLICESKDKFLRSLFE 569 (717)
T ss_pred HHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChH----HhcCccccHHHHHHHHhCchHHHHHHhc
Confidence 5321 1 11345799999999999999 8889999999999999999999999998
Q ss_pred ccc
Q psy11163 139 EAE 141 (148)
Q Consensus 139 ~~~ 141 (148)
...
T Consensus 570 ~~~ 572 (717)
T cd01382 570 SST 572 (717)
T ss_pred ccc
Confidence 653
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=5.4e-40 Score=291.21 Aligned_cols=135 Identities=31% Similarity=0.445 Sum_probs=124.5
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhc-CCCccceechhhhhcC-CCCCcchh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANWS-RGNPMVSC 79 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~-~p~Gll~iLDee~~~p-~~td~t~~ 79 (148)
|||||||||||||||++|++++|..|+++|.+|||.|..++|.||++|+|||++ +|.|||++|||||++| ++||++|+
T Consensus 383 sfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~ 462 (674)
T cd01378 383 SFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFL 462 (674)
T ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHH
Confidence 799999999999999999999999999999999999999999999999999999 8999999999999999 99999999
Q ss_pred hhhhhCCCC-------------CCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 80 VFWMIKPTG-------------RGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 80 ~~~~~k~~~-------------~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
.++....++ ..++||||+|+|+++||+ +||+|.+..+++++|++|+|++|+.||.+.
T Consensus 463 ~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfl----eKNrD~l~~~~~~ll~~S~n~~i~~lf~~~ 532 (674)
T cd01378 463 EKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFC----DKNKDTLFKDLIELMQSSSNPFLRSLFPEK 532 (674)
T ss_pred HHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHH----HhhcchhhHHHHHHHHhCchHHHHHHhccc
Confidence 876542111 235799999999999999 888899999999999999999999999853
No 9
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.5e-39 Score=288.38 Aligned_cols=133 Identities=34% Similarity=0.568 Sum_probs=121.5
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
|||||||||||||||++|++++|..|+++|.+|||.|..++|.||++|++||+++|.|||++|||||++|++||++|+.+
T Consensus 382 sfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~k 461 (677)
T cd01383 382 SFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANK 461 (677)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhCCC-----------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhccc
Q psy11163 82 WMIKPT-----------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIE 139 (148)
Q Consensus 82 ~~~k~~-----------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~ 139 (148)
+..+.+ ...++||||+|+|+++||+ +||+|.+..+++++|++|+++++. +|..
T Consensus 462 l~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfl----eKNrD~l~~~~~~ll~~S~~~~~~-~f~~ 525 (677)
T cd01383 462 LKQHLKTNSCFRGERGGAFTVRHYAGEVTYDTTGFL----EKNRDLLHSDSIQLLSSCKCQLPQ-LFAS 525 (677)
T ss_pred HHHHhCCCCCCCCCCCCceEEEEeccceeecCCChH----HhccccccHHHHHHHHhCchHHHH-HHHh
Confidence 654222 1245899999999999999 888899999999999999998765 7753
No 10
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.2e-39 Score=289.59 Aligned_cols=134 Identities=36% Similarity=0.537 Sum_probs=123.4
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
||||||||||||+||++|++++|..|+++|.+|||+|..++|.||++|+|||++ |.|||++|||||++|++||++|+.+
T Consensus 385 sfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~td~~f~~k 463 (691)
T cd01380 385 SFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKGSDESWAQK 463 (691)
T ss_pred CHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCCChHHHHHH
Confidence 799999999999999999999999999999999999999999999999999996 6999999999999999999999887
Q ss_pred hhhCCC---------------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 82 WMIKPT---------------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 82 ~~~k~~---------------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
+..+.. ...++||||+|+|+++||+ +||+|.+..+++++|++|+|++|+.||+..
T Consensus 464 l~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfl----eKNrD~l~~~~~~ll~~S~~~~i~~lf~~~ 533 (691)
T cd01380 464 LYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFL----EKNRDTVSDEHLDVLKASKNPFLKEVLDAA 533 (691)
T ss_pred HHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccccHH----HhccccccHHHHHHHHhCccHHHHHHhhhh
Confidence 644322 1235799999999999999 888899999999999999999999999764
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=2.5e-39 Score=287.68 Aligned_cols=135 Identities=31% Similarity=0.499 Sum_probs=123.9
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeeccc-CCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCV 80 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~-~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~ 80 (148)
||||||||||||+||++|++++|+.|+++|.+|||.|..++| .||++||+||+++|.|||++|||||++|++||++|+.
T Consensus 391 sfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~ 470 (693)
T cd01377 391 SFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVE 470 (693)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHH
Confidence 799999999999999999999999999999999999999999 5999999999999999999999999999999999988
Q ss_pred hhhhCCC---------------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 81 FWMIKPT---------------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 81 ~~~~k~~---------------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
++..... ...++||||.|+|+++||+ +||+|.+..+++++|++|+|++|+.||+..
T Consensus 471 kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfl----eKN~D~l~~~~~~ll~~S~~~~i~~lf~~~ 541 (693)
T cd01377 471 KLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWL----EKNKDPLNDNVVGLLKKSSDKLVAELFKDY 541 (693)
T ss_pred HHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHH----HhccccccHHHHHHHHhCchHHHHHHhhhh
Confidence 7543211 1235799999999999999 888899999999999999999999999864
No 12
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=5.3e-39 Score=285.24 Aligned_cols=136 Identities=36% Similarity=0.566 Sum_probs=125.1
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
|||||||||||||||++|++++|..|+++|.+|||.|+.++|.||++||+||+++|.|||++|||||++|++||++|+.+
T Consensus 386 sfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~k 465 (677)
T smart00242 386 SFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEK 465 (677)
T ss_pred CHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhC---------CC-----CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhccccc
Q psy11163 82 WMIK---------PT-----GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEAE 141 (148)
Q Consensus 82 ~~~k---------~~-----~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~~ 141 (148)
+..+ ++ ...++||||+|+|+++||+ +||+|.++.+++++|++|+|++|+.||+...
T Consensus 466 l~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfl----eKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~ 535 (677)
T smart00242 466 LNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFL----EKNKDTLFKDLIELLQSSKNPLIASLFPSGE 535 (677)
T ss_pred HHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHH----HHccchhhHHHHHHHHhCCcHHHHHHhcccc
Confidence 5432 21 1235899999999999999 8888999999999999999999999998653
No 13
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=1.6e-38 Score=282.38 Aligned_cols=135 Identities=37% Similarity=0.569 Sum_probs=125.0
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
||||||||||||+||++|++++|..|+++|.+|||.|..++|.||++|++||+++|.|||++|||||++|+++|++|+.+
T Consensus 379 sfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~k 458 (679)
T cd00124 379 SFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEK 458 (679)
T ss_pred CHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhCCC--------------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 82 WMIKPT--------------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 82 ~~~k~~--------------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
+....+ ...++||||+|+|+++||+ +||+|.++.+++++|+.|+|++|+.||...
T Consensus 459 l~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfl----eKN~D~l~~~~~~ll~~S~~~~i~~lf~~~ 527 (679)
T cd00124 459 LNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFL----EKNKDVLSPELVSLLKSSSNPFIRELFESE 527 (679)
T ss_pred HHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHH----HhcCCcccHHHHHHHHhCCcHHHHHHhccc
Confidence 643211 1245899999999999999 888899999999999999999999999873
No 14
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.1e-37 Score=275.49 Aligned_cols=130 Identities=32% Similarity=0.530 Sum_probs=117.3
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
|||||||||||||||++|++++|..|+++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|++||++|+.+
T Consensus 390 sfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~k 469 (653)
T cd01379 390 SFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEK 469 (653)
T ss_pred CHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhC--------CC----CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhc
Q psy11163 82 WMIK--------PT----GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLL 137 (148)
Q Consensus 82 ~~~k--------~~----~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf 137 (148)
+..+ ++ ...++||||+|+|+++||+ +||+|.++.+++++|+.| +-|+.-|
T Consensus 470 l~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfl----eKNkD~l~~~~~~ll~~S--~tv~~~f 531 (653)
T cd01379 470 FEDNLKSKFFWRPKRVELSFGIHHYAGKVLYNASGFL----EKNRDFLPADIVLLLRSS--QTVASYF 531 (653)
T ss_pred HHHhcCCCCccCCCCCCCceEEEEeceeEeecCCCHH----HhccccccHHHHHHHHhC--cHHHHHH
Confidence 6432 21 1246899999999999999 888899999999999988 4455444
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.2e-36 Score=272.58 Aligned_cols=135 Identities=24% Similarity=0.233 Sum_probs=118.2
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeeccc-CCcHHHHHHHhcCC--------------Cccceechh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCVLDD 66 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~-~dn~~~l~ll~~~p--------------~Gll~iLDe 66 (148)
||||||||||||+||++|++++|..|+++|.+|||+|+.+.+ .||++||+||+++| .|||++|||
T Consensus 396 sfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDE 475 (767)
T cd01386 396 TFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDE 475 (767)
T ss_pred CHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhH
Confidence 799999999999999999999999999999999999986555 79999999999865 599999999
Q ss_pred hhhcCCCCCcchhhhhhhCCC-------------------CCCccccCC--ceeecCCCceecccccccchh-hHHHHHH
Q psy11163 67 QANWSRGNPMVSCVFWMIKPT-------------------GRGETQWSP--LVEGKPNGLLCVLDDQAKRKH-GICMEQL 124 (148)
Q Consensus 67 e~~~p~~td~t~~~~~~~k~~-------------------~~~~~hfag--~V~Y~~~gfi~~n~~~n~d~l-~~~~~~l 124 (148)
||++|++||++|+.++....+ ...++|||| +|+|+++||+ +||+|.+ ..++++|
T Consensus 476 ec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfl----eKNkD~~~~~~~~~l 551 (767)
T cd01386 476 EALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWL----RRAKPNPAALNAPQL 551 (767)
T ss_pred hhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHH----HhcCCCCChHHHHHH
Confidence 999999999999987643211 123579999 4999999999 7778865 5899999
Q ss_pred HhhcChhhHHHhcccc
Q psy11163 125 IGAWSIDWSIKLLIEA 140 (148)
Q Consensus 125 ~~~S~n~~v~~Lf~~~ 140 (148)
|+.|++++|..||...
T Consensus 552 l~~S~~~~i~~lF~~~ 567 (767)
T cd01386 552 LQDSKREEINSLFQGR 567 (767)
T ss_pred HHhCCcHHHHHHHhcc
Confidence 9999999999999753
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=6.9e-37 Score=272.05 Aligned_cols=136 Identities=37% Similarity=0.618 Sum_probs=118.5
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeeccc-CCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCV 80 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~-~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~ 80 (148)
|||||||||||||||++|++++|..++++|.+|||.|+.++| .||.+|++||+++|.|||++|||||++|+++|++|+.
T Consensus 381 ~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~ 460 (689)
T PF00063_consen 381 SFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLE 460 (689)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHH
T ss_pred ccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHH
Confidence 699999999999999999999999999999999999999999 9999999999999999999999999999999999987
Q ss_pred hhhh----------CCC--------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhccccc
Q psy11163 81 FWMI----------KPT--------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEAE 141 (148)
Q Consensus 81 ~~~~----------k~~--------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~~ 141 (148)
++.. +++ ...++||+|+|+|+++||+ +||+|.++++++++|+.|+|++|+.||....
T Consensus 461 kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfl----eKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~ 535 (689)
T PF00063_consen 461 KLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFL----EKNRDPLSQDFVSLLRSSTNSFVSSLFSSEA 535 (689)
T ss_dssp HHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHH----HHHHE-S-HHHHHHHHTSSSHHHHHHTHSHH
T ss_pred HHHhhcccCCCcccccccccccCCCceEeecccCcceecccccc----ccccchHHHHHHHHHHhCcCccccccccccc
Confidence 6422 121 1135799999999999999 8888999999999999999999999998753
No 17
>KOG0164|consensus
Probab=100.00 E-value=1.4e-36 Score=264.21 Aligned_cols=137 Identities=29% Similarity=0.392 Sum_probs=124.9
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCC-CCCcchhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSR-GNPMVSCV 80 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~-~td~t~~~ 80 (148)
||||||||||||+|||+|++-+++.||++|.+|||+|.+++|.+|.-++||++.+..||++||||||+.|+ .||.+|+.
T Consensus 392 SFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~ 471 (1001)
T KOG0164|consen 392 SFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLE 471 (1001)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999996 68999987
Q ss_pred hhhhC---CC-----------------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 81 FWMIK---PT-----------------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 81 ~~~~k---~~-----------------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
++-.+ +. ....+||||.|+|++.||+ |||+|.|..|+.++|..|+|+.+++||||+
T Consensus 472 ~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFi----dKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG 547 (1001)
T KOG0164|consen 472 KLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFI----DKNNDLLFQDLKRLMYNSKNPLLKSLFPEG 547 (1001)
T ss_pred HHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeee----ccCccHHHHHHHHHHHhcCCchHHHhCCCC
Confidence 54221 11 1124799999999999999 999999999999999999999999999998
Q ss_pred cc
Q psy11163 141 ES 142 (148)
Q Consensus 141 ~~ 142 (148)
.+
T Consensus 548 ~~ 549 (1001)
T KOG0164|consen 548 NP 549 (1001)
T ss_pred Ch
Confidence 64
No 18
>KOG0161|consensus
Probab=100.00 E-value=8e-35 Score=275.28 Aligned_cols=134 Identities=32% Similarity=0.512 Sum_probs=122.8
Q ss_pred CchhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeeccc-CCcHHHHHHHhcCCCccceechhhhhcCCCCCcchh
Q psy11163 1 MTFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSC 79 (148)
Q Consensus 1 ~sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~-~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~ 79 (148)
+|||||||||+||+||++|++++|..++++|.+|||.|.+|+| .|-++|++||++ |+||+|+|||||.+|++||.||+
T Consensus 464 nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~ 542 (1930)
T KOG0161|consen 464 NSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFL 542 (1930)
T ss_pred CCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHH
Confidence 5899999999999999999999999999999999999999999 899999999994 78999999999999999999998
Q ss_pred hhhhh----------CCC------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhccc
Q psy11163 80 VFWMI----------KPT------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIE 139 (148)
Q Consensus 80 ~~~~~----------k~~------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~ 139 (148)
.+++. +++ +....||+|+|.|++.||+ ++|+|+++..++.++++|++++|+.||.+
T Consensus 543 ~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL----~Knkdpln~~v~~ll~~s~~~~v~~l~~~ 614 (1930)
T KOG0161|consen 543 EKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWL----EKNKDPLNDNVVSLLKQSTNKLVSSLFQD 614 (1930)
T ss_pred HHHHHHhhccCccccCcccccchhhhheeeecceeccCccchh----hcCCCCchHHHHHHHHhcccHHHHHHhhh
Confidence 87532 221 0123699999999999999 99999999999999999999999999998
No 19
>KOG0162|consensus
Probab=99.97 E-value=1.1e-32 Score=240.38 Aligned_cols=136 Identities=27% Similarity=0.390 Sum_probs=121.2
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhc-CCCccceechhhhhcCC----CCCc
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANWSR----GNPM 76 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~-~p~Gll~iLDee~~~p~----~td~ 76 (148)
|||||||||.||+|||.|++.+++.|||+|.+|||.|.+|.|.||.-++|||+. +|.||+++|||.|...- +.|.
T Consensus 400 ~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDq 479 (1106)
T KOG0162|consen 400 GFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQ 479 (1106)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHH
Confidence 799999999999999999999999999999999999999999999999999997 58899999999998753 4577
Q ss_pred chhhhhh---hCCC-------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhccccc
Q psy11163 77 VSCVFWM---IKPT-------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEAE 141 (148)
Q Consensus 77 t~~~~~~---~k~~-------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~~ 141 (148)
+|++++- ..+. +.-.+||||.|+|+++||. |+|+|.|-.|+++||+.|+|.|++.||||..
T Consensus 480 a~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~----drNrD~L~~DlieLm~ts~~~Fl~slFPe~v 550 (1106)
T KOG0162|consen 480 ALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFC----DRNRDVLFKDLIELMQTSENPFLKSLFPENV 550 (1106)
T ss_pred HHHHHHHHHhcCCCccccccCceEEEEeccceeeeccccc----ccchhHHHHHHHHHHhccchHHHHHhCchhh
Confidence 7877643 1111 1235899999999999999 9999999999999999999999999999974
No 20
>KOG0163|consensus
Probab=99.97 E-value=1.6e-31 Score=233.93 Aligned_cols=136 Identities=29% Similarity=0.445 Sum_probs=123.8
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
||||||||||||+||++|++++++.||+.|..||+.++.|.|.||++||+||+.|..|||.|||||.++|++++..|..+
T Consensus 468 SFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~ 547 (1259)
T KOG0163|consen 468 SFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTAR 547 (1259)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred hhhCCC-----------------------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcc
Q psy11163 82 WMIKPT-----------------------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLI 138 (148)
Q Consensus 82 ~~~k~~-----------------------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~ 138 (148)
.+.+.+ |.-++||||.|.|....|+ ++|.|.|...+..||..|+++++.+||+
T Consensus 548 vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~Fv----EKNnD~LH~SLe~Li~es~~~ll~sLF~ 623 (1259)
T KOG0163|consen 548 VHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFV----EKNNDALHNSLEGLIEESDNPLLVSLFP 623 (1259)
T ss_pred HHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHH----HhccHHHHHHHHHHHHhccchHHHHHcc
Confidence 332211 1124799999999999999 8888999999999999999999999999
Q ss_pred ccc
Q psy11163 139 EAE 141 (148)
Q Consensus 139 ~~~ 141 (148)
-..
T Consensus 624 S~s 626 (1259)
T KOG0163|consen 624 SGS 626 (1259)
T ss_pred CCC
Confidence 754
No 21
>KOG0160|consensus
Probab=99.96 E-value=3e-30 Score=230.89 Aligned_cols=132 Identities=37% Similarity=0.554 Sum_probs=122.0
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
+||||||||+||+||+.|++|+|+.|+++|..|+|+|..++|.||++|+++++. |.|++++|||+|++|.++|+++..+
T Consensus 385 sfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~K 463 (862)
T KOG0160|consen 385 SFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQK 463 (862)
T ss_pred cHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHH
Confidence 799999999999999999999999999999999999999999999999999997 8999999999999999999999876
Q ss_pred hhhC---------CCC----CCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcc
Q psy11163 82 WMIK---------PTG----RGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLI 138 (148)
Q Consensus 82 ~~~k---------~~~----~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~ 138 (148)
++.. +.. ..+.||||+|+|+..||+ ++|+|.+++++.+++.+|++.++..+|+
T Consensus 464 L~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL----~knrd~v~~el~~ll~~s~~~~~~~~~~ 529 (862)
T KOG0160|consen 464 LYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFL----EKNRDYVSDELIDLLLASDCHFVAGLAP 529 (862)
T ss_pred HHHHhccCCccCCCCCCcCCcccccccCccccchhhhc----cCCccccCHHHHhhhhhcccchHHHhcc
Confidence 5432 221 135799999999999999 8888999999999999999999999998
No 22
>KOG4229|consensus
Probab=99.91 E-value=1.1e-25 Score=205.48 Aligned_cols=133 Identities=36% Similarity=0.609 Sum_probs=120.1
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
+|||+|||+|||+||.+|++++|..|+++|..|+|.|..+.|.||..|+++|..+|+||+.+||||+.+|++||.|++.+
T Consensus 444 sfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k 523 (1062)
T KOG4229|consen 444 SFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLK 523 (1062)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred h---------hhCCC-----CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcc
Q psy11163 82 W---------MIKPT-----GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLI 138 (148)
Q Consensus 82 ~---------~~k~~-----~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~ 138 (148)
+ +..++ ..+++||+|.|.|+..||+ ++|+|.+..+++.+++.|.+.+++.+..
T Consensus 524 ~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~fl----ekNrD~~~~d~~~~~~s~~~~~~~~~~~ 590 (1062)
T KOG4229|consen 524 LNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFL----EKNRDTVRNDLVNLLRSSDESLLRQLVN 590 (1062)
T ss_pred hhhhhhcccccccccccccceeeeeeecceehhhhhhHH----HhhhhhhhhhHHhhcccccchhhcccCC
Confidence 3 22222 2356899999999999999 7778899999999999988888777653
No 23
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=20.68 E-value=83 Score=17.34 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=9.9
Q ss_pred hhhHHHHHhHHHHH
Q psy11163 4 EQLCINYANEHLQY 17 (148)
Q Consensus 4 eqlciN~~nE~Lq~ 17 (148)
-|+|+||. ++|+.
T Consensus 23 ~~f~~~yF-~kL~~ 35 (38)
T smart00394 23 VQFAADYF-EKLEE 35 (38)
T ss_pred HHHHHHHH-HHHHH
Confidence 47889988 77764
Done!