Query psy11163
Match_columns 148
No_of_seqs 150 out of 1027
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:37:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 3.5E-42 1.2E-46 304.7 6.7 136 2-141 397-551 (697)
2 2v26_A Myosin VI; calmodulin-b 100.0 6.4E-42 2.2E-46 306.2 7.5 135 2-140 463-620 (784)
3 4anj_A Unconventional myosin-V 100.0 1.4E-41 4.6E-46 310.9 8.0 136 2-141 467-625 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 3E-41 1E-45 302.2 5.9 135 2-141 448-597 (795)
5 4db1_A Myosin-7; S1DC, cardiac 100.0 4.2E-41 1.4E-45 300.6 5.7 134 2-140 472-624 (783)
6 1w9i_A Myosin II heavy chain; 100.0 4.5E-41 1.5E-45 299.8 5.4 135 2-140 465-615 (770)
7 1kk8_A Myosin heavy chain, str 100.0 1.4E-40 4.6E-45 299.2 7.1 135 2-141 471-626 (837)
8 2ycu_A Non muscle myosin 2C, a 100.0 2.6E-40 8.8E-45 302.1 6.6 136 2-141 444-597 (995)
9 2dfs_A Myosin-5A; myosin-V, in 100.0 3.5E-40 1.2E-44 303.1 5.8 135 2-141 448-597 (1080)
10 1g8x_A Myosin II heavy chain f 100.0 6.7E-40 2.3E-44 299.5 5.8 135 2-140 465-615 (1010)
11 1i84_S Smooth muscle myosin he 100.0 3.5E-39 1.2E-43 298.7 7.6 136 2-141 475-628 (1184)
12 2kl8_A OR15; structural genomi 33.2 13 0.00044 23.1 0.7 14 92-105 27-40 (85)
13 2imu_A Structural polyprotein 27.4 39 0.0013 19.1 2.0 24 120-143 5-28 (46)
14 1y4m_A HERV-FRD_6P24.1 proviru 21.8 24 0.00081 20.9 0.4 26 45-70 25-50 (53)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=3.5e-42 Score=304.73 Aligned_cols=136 Identities=28% Similarity=0.330 Sum_probs=123.4
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
||||||||||||+||++|++++|+.|+++|.+|||+|..++|.||++|+|||+++|.|||+||||||++|++||.+|+.+
T Consensus 397 sFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~k 476 (697)
T 1lkx_A 397 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDS 476 (697)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHH
T ss_pred CHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhC---------CC----------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhccccc
Q psy11163 82 WMIK---------PT----------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEAE 141 (148)
Q Consensus 82 ~~~k---------~~----------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~~ 141 (148)
+... +. ...+.||||+|+|+++||+ +||+|.+++++++||++|+++||+.||++..
T Consensus 477 l~~~~~~~~~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfl----eKNkD~l~~~~~~ll~~S~~~~l~~lf~~~~ 551 (697)
T 1lkx_A 477 ICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFL----DKNKDTLFGDLISSMQSSSDPLVQGLFPPTR 551 (697)
T ss_dssp HHHHSSSSTTEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHH----HHHHCCCCHHHHHHHHTCCSHHHHHHCC---
T ss_pred HHHHhcCCCccccCCCCCCCccccCceeeeeeeeEEEEccCChh----hhhcccccHHHHHHHhccchHHHHHhccccc
Confidence 5431 11 1135799999999999999 8888999999999999999999999999754
No 2
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=6.4e-42 Score=306.22 Aligned_cols=135 Identities=27% Similarity=0.427 Sum_probs=122.6
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
||||||||||||+||++|++++|+.|+++|.+|||+|..++|.||++|+|||+++|.|||+||||||++|++||++|+.+
T Consensus 463 sFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~k 542 (784)
T 2v26_A 463 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSA 542 (784)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhCCC-----------------------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcc
Q psy11163 82 WMIKPT-----------------------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLI 138 (148)
Q Consensus 82 ~~~k~~-----------------------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~ 138 (148)
+..... ...+.||||+|+|+++||+ +||+|.|+.++++||++|+|+||+.||+
T Consensus 543 l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfl----eKN~D~l~~~~~~ll~~S~~~~l~~Lf~ 618 (784)
T 2v26_A 543 VHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV----EKNNDALHMSLESLICESRDKFIRELFE 618 (784)
T ss_dssp HHHHTTTCTTEECGGGCSSGGGTTSCTTSEEEEEETTEEEEEECTTHH----HHTBCCCCHHHHHHHHTCSCHHHHHHC-
T ss_pred HHHHhCCCcccccCCCccccccccccCCCceEeeecCccEeeeccCHH----HhccchhhHHHHHHHHhchhhHHHHHcc
Confidence 543211 1235799999999999999 8889999999999999999999999998
Q ss_pred cc
Q psy11163 139 EA 140 (148)
Q Consensus 139 ~~ 140 (148)
+.
T Consensus 619 ~~ 620 (784)
T 2v26_A 619 SS 620 (784)
T ss_dssp --
T ss_pred cc
Confidence 75
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.4e-41 Score=310.89 Aligned_cols=136 Identities=26% Similarity=0.408 Sum_probs=124.9
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
||||||||||||+||++|++++|+.|+++|.+|||+|..++|.||++|||||+++|.|||+||||||++|++||++|+.+
T Consensus 467 sFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~k 546 (1052)
T 4anj_A 467 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSA 546 (1052)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhCCCC-----------------------CCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcc
Q psy11163 82 WMIKPTG-----------------------RGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLI 138 (148)
Q Consensus 82 ~~~k~~~-----------------------~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~ 138 (148)
+..+.++ ..+.||||+|+|+++||+ +||+|.|++++++||++|+|+||+.||+
T Consensus 547 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfl----eKNrD~l~~~~~~ll~~S~~~~i~~Lf~ 622 (1052)
T 4anj_A 547 VHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV----EKNNDALHMSLESLICESRDKFIRELFE 622 (1052)
T ss_dssp HHHTTTTCTTEECGGGCSCSTTTTCCTTSEEEEEETTEEEEEECTTHH----HHHBCCCCHHHHHHHHTCSCHHHHHTTC
T ss_pred HHHHhccCccccCCcccccccccccCCCCCeEEEcCCccEEEecCChh----hhccccccHHHHHHHHhCCcHHHHHhhh
Confidence 6543221 234799999999999999 8888999999999999999999999998
Q ss_pred ccc
Q psy11163 139 EAE 141 (148)
Q Consensus 139 ~~~ 141 (148)
+..
T Consensus 623 ~~~ 625 (1052)
T 4anj_A 623 SST 625 (1052)
T ss_dssp C--
T ss_pred ccc
Confidence 754
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=3e-41 Score=302.19 Aligned_cols=135 Identities=35% Similarity=0.515 Sum_probs=122.3
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
||||||||||||+||++|++++|+.|+++|.+|||+|..++|.||++|||||+++ .|||+||||||++|++||++|+.+
T Consensus 448 sFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~tD~~f~~k 526 (795)
T 1w7j_A 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQK 526 (795)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTCCHHHHHHH
T ss_pred CHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCCChHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999986 999999999999999999999987
Q ss_pred hhhC----------CC----CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcC-hhhHHHhccccc
Q psy11163 82 WMIK----------PT----GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWS-IDWSIKLLIEAE 141 (148)
Q Consensus 82 ~~~k----------~~----~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~-n~~v~~Lf~~~~ 141 (148)
++.. ++ ...+.||||+|+|+++||+ +||+|.|++++++||++|+ |+||+.||++..
T Consensus 527 l~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfl----eKNkD~l~~~~~~ll~~S~~~~~v~~lf~~~~ 597 (795)
T 1w7j_A 527 LYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFL----EKNKDTVYEEQIKVLKSSKKFKLLPELFQDEE 597 (795)
T ss_dssp HHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHH----HHHHCCCCHHHHHHHHTCSSCSHHHHTTC---
T ss_pred HHHHhhccCCccccCCCCCCceEEEecceEEEEechhHH----hhccccccHHHHHHHHhccccHHHHHHhcccc
Confidence 5432 11 1135799999999999999 8889999999999999999 999999998754
No 5
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=4.2e-41 Score=300.59 Aligned_cols=134 Identities=33% Similarity=0.568 Sum_probs=121.7
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeeccc-CCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCV 80 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~-~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~ 80 (148)
||||||||||||+||++|++++|+.|+++|.+|||+|..++| .||++|+|||++ |.|||+||||||++|++||++|+.
T Consensus 472 sFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~tD~tf~~ 550 (783)
T 4db1_A 472 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKATDMTFKA 550 (783)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCCCHHHHHH
Confidence 799999999999999999999999999999999999999999 599999999995 899999999999999999999998
Q ss_pred hhhh----------CCC--------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 81 FWMI----------KPT--------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 81 ~~~~----------k~~--------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
+++. +++ ...+.||||.|+|+++||+ +||+|.|+.++++||++|+++||+.||++.
T Consensus 551 kl~~~~~~~~~~f~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfl----eKNkD~l~~~~~~ll~~S~~~~v~~lf~~~ 624 (783)
T 4db1_A 551 KLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWL----QKNKDPLNETVVGLYQKSSLKLLSTLFANY 624 (783)
T ss_dssp HHHHHHTTTCTTEECCCC----C-CCEEEEETTEEEEECCTTHH----HHHHCCCCHHHHHHHHTCSSHHHHHHHHSC
T ss_pred HHHHHhcCCCCCccCCCCCCCCCCCCeEEeCcCCceEEeCcChh----hhccccccHHHHHHHHHCccHHHHHHhhcc
Confidence 7542 121 1235799999999999999 888899999999999999999999999874
No 6
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=4.5e-41 Score=299.80 Aligned_cols=135 Identities=34% Similarity=0.532 Sum_probs=123.4
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeeccc-CCcHHHHHHHhcC-CCccceechhhhhcCCCCCcchh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQANWSRGNPMVSC 79 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~-~dn~~~l~ll~~~-p~Gll~iLDee~~~p~~td~t~~ 79 (148)
||||||||||||+||++|++++|..|+++|.+|||+|..++| .||++|+|||+++ |.|||+||||||++|++||++|+
T Consensus 465 sFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~ 544 (770)
T 1w9i_A 465 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLI 544 (770)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHH
Confidence 799999999999999999999999999999999999999999 5999999999984 99999999999999999999998
Q ss_pred hhhhh----------CCCC----CCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 80 VFWMI----------KPTG----RGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 80 ~~~~~----------k~~~----~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
.+++. +++. ..+.||||.|+|+++||+ +||+|.|+.++++||++|+|+||+.||++.
T Consensus 545 ~kL~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfl----eKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~ 615 (770)
T 1w9i_A 545 TKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWL----EKNKDPLQQDLELCFKDSSDNVVTKLFNDP 615 (770)
T ss_dssp HHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHH----HHHHCCCCHHHHHHHHTCSSTTHHHHHHCH
T ss_pred HHHHHHhcCCCCCccCCCCCCCceEeeccCccccccccChh----hhccCcccHHHHHHHHhchHHHHHHHhhcc
Confidence 87432 1221 235799999999999999 888899999999999999999999999874
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=1.4e-40 Score=299.20 Aligned_cols=135 Identities=35% Similarity=0.579 Sum_probs=122.3
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeeccc-CCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCV 80 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~-~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~ 80 (148)
||||||||||||+||++|++++|..|+++|.+|||+|..++| .||++|||||++ |.|||+||||||++|++||++|+.
T Consensus 471 sFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~ 549 (837)
T 1kk8_A 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQD 549 (837)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHH
T ss_pred cHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHH
Confidence 799999999999999999999999999999999999999999 599999999996 899999999999999999999988
Q ss_pred hhh----------hCCCC----------CCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 81 FWM----------IKPTG----------RGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 81 ~~~----------~k~~~----------~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
+++ .+++. ..+.||||.|+|+++||+ +||+|.|+.++++||++|+|+||+.||++.
T Consensus 550 kl~~~~~~~~~~f~~p~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfl----eKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~ 625 (837)
T 1kk8_A 550 KLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSITGWL----EKNKDPINENVVALLGASKEPLVAELFKAP 625 (837)
T ss_dssp HHHHHHTTTCSSEECCCSCSSTTCCCCSEEEEETTEEEEECCSSHH----HHHSCCCCHHHHHHHHTCSSHHHHHHTCC-
T ss_pred HHHHHhcCCCcCccCCCccccccccCCceEEeeccCcccccHHHHH----HhccccccHHHHHHHHhchHHHHHHHhccc
Confidence 742 12221 135799999999999999 888999999999999999999999999875
Q ss_pred c
Q psy11163 141 E 141 (148)
Q Consensus 141 ~ 141 (148)
.
T Consensus 626 ~ 626 (837)
T 1kk8_A 626 E 626 (837)
T ss_dssp -
T ss_pred c
Confidence 4
No 8
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=2.6e-40 Score=302.06 Aligned_cols=136 Identities=31% Similarity=0.507 Sum_probs=124.7
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeeccc-CCcHHHHHHHhc--CCCccceechhhhhcCCCCCcch
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQANWSRGNPMVS 78 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~-~dn~~~l~ll~~--~p~Gll~iLDee~~~p~~td~t~ 78 (148)
||||||||||||+||++|++++|..|+++|.+|||+|..++| .||++|||||++ +|.|||+||||||++|++||.+|
T Consensus 444 sfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f 523 (995)
T 2ycu_A 444 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSF 523 (995)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHH
Confidence 799999999999999999999999999999999999999999 699999999997 48999999999999999999999
Q ss_pred hhhhhh---------CCC------CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhccccc
Q psy11163 79 CVFWMI---------KPT------GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEAE 141 (148)
Q Consensus 79 ~~~~~~---------k~~------~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~~ 141 (148)
+.+++. +++ ...+.||||.|+|+++||+ +||+|.|+.++++||++|+++||+.||++..
T Consensus 524 ~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~Y~~~gfl----eKN~D~l~~~~~~ll~~S~~~~v~~lf~~~~ 597 (995)
T 2ycu_A 524 VEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWL----MKNMDPLNDNVAALLHQSTDRLTAEIWKDVE 597 (995)
T ss_dssp HHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEEECCTTHH----HHHHCCCCHHHHHHHHTCSSHHHHHHTSSCC
T ss_pred HHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCccccccchh----hhccccccHHHHHHHHhCcHHHHHHHhhccc
Confidence 887432 222 1235799999999999999 8889999999999999999999999999865
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=3.5e-40 Score=303.11 Aligned_cols=135 Identities=35% Similarity=0.515 Sum_probs=122.3
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeecccCCcHHHHHHHhcCCCccceechhhhhcCCCCCcchhhh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 81 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~~dn~~~l~ll~~~p~Gll~iLDee~~~p~~td~t~~~~ 81 (148)
||||||||||||+||++|++++|..|+++|.+|||+|..++|.||++|||||+++ .|||+||||||++|++||++|+.+
T Consensus 448 sFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~tD~~f~~k 526 (1080)
T 2dfs_A 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKGSDDTWAQK 526 (1080)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCCChHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999986 999999999999999999999887
Q ss_pred hhhC----------CC----CCCccccCCceeecCCCceecccccccchhhHHHHHHHhhc-ChhhHHHhccccc
Q psy11163 82 WMIK----------PT----GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAW-SIDWSIKLLIEAE 141 (148)
Q Consensus 82 ~~~k----------~~----~~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S-~n~~v~~Lf~~~~ 141 (148)
++.. ++ ...+.||||+|+|+++||+ +||+|.|++++++||++| +|+||+.||++..
T Consensus 527 l~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfl----eKN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~ 597 (1080)
T 2dfs_A 527 LYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFL----EKNKDTVYEEQIKVLKSSKKFKLLPELFQDEE 597 (1080)
T ss_dssp HHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHH----HHHBCCCCHHHHHHHHTCSSCSHHHHSCC---
T ss_pred HHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHH----HhccccccHHHHHHHHcccccHHHHHHhcccc
Confidence 5432 21 1235799999999999999 888999999999999999 9999999998753
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=6.7e-40 Score=299.49 Aligned_cols=135 Identities=34% Similarity=0.526 Sum_probs=123.5
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeeccc-CCcHHHHHHHhc-CCCccceechhhhhcCCCCCcchh
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQANWSRGNPMVSC 79 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~-~dn~~~l~ll~~-~p~Gll~iLDee~~~p~~td~t~~ 79 (148)
||||||||||||+||++|++++|..|+++|.+|||+|..++| .||++||+||++ +|.|||+||||||++|++||++|+
T Consensus 465 sfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~ 544 (1010)
T 1g8x_A 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLI 544 (1010)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHH
T ss_pred cHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHH
Confidence 799999999999999999999999999999999999999999 599999999998 499999999999999999999998
Q ss_pred hhhhh----------CCCC----CCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhcccc
Q psy11163 80 VFWMI----------KPTG----RGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEA 140 (148)
Q Consensus 80 ~~~~~----------k~~~----~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~ 140 (148)
.++.. +++. ..+.||||.|+|+++||+ +||+|.|+.++++||++|+|+||+.||++.
T Consensus 545 ~kl~~~~~~~~~~f~~~~~~~~~F~i~HyAG~V~Y~~~gfl----eKN~D~l~~~~~~ll~~S~~~~~~~lf~~~ 615 (1010)
T 1g8x_A 545 TKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWL----EKNKDPLQQDLELCFKDSSDNVVTKLFNDP 615 (1010)
T ss_dssp HHHHHHHTTTCTTEECCTTCSSEEEEEETTEEEEEECTTHH----HHHHCCCCHHHHHHHTTCSCHHHHHHHHCH
T ss_pred HHHHHHhcCCCCCcccCCCCCCCEEEeeeceEEEEeecCcc----ccccccccHHHHHHHHhCcHHHHHHHhccc
Confidence 76432 1211 235799999999999999 888899999999999999999999999875
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=3.5e-39 Score=298.75 Aligned_cols=136 Identities=30% Similarity=0.498 Sum_probs=123.2
Q ss_pred chhhhHHHHHhHHHHHHHHHHHhhhhHHHhhhcCCeeeeccc-CCcHHHHHHHhcC--CCccceechhhhhcCCCCCcch
Q psy11163 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQANWSRGNPMVS 78 (148)
Q Consensus 2 sfeqlciN~~nE~Lq~~~~~~~f~~e~~~y~~Egi~~~~i~~-~dn~~~l~ll~~~--p~Gll~iLDee~~~p~~td~t~ 78 (148)
||||||||||||+||++|++++|..|+++|..|||+|..++| .||++|||||+++ |+|||+||||||++|++||.+|
T Consensus 475 sfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~ 554 (1184)
T 1i84_S 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSF 554 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHH
Confidence 799999999999999999999999999999999999999999 5999999999962 3499999999999999999999
Q ss_pred hhhhhh---------CCCC------CCccccCCceeecCCCceecccccccchhhHHHHHHHhhcChhhHHHhccccc
Q psy11163 79 CVFWMI---------KPTG------RGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEAE 141 (148)
Q Consensus 79 ~~~~~~---------k~~~------~~~~hfag~V~Y~~~gfi~~n~~~n~d~l~~~~~~l~~~S~n~~v~~Lf~~~~ 141 (148)
+.+++. +++. ..+.||||.|+|+++||+ +||+|.|+++++.||++|+|+||+.||++..
T Consensus 555 ~~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gfl----~kN~d~l~~~~~~ll~~s~~~~~~~lf~~~~ 628 (1184)
T 1i84_S 555 VEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWL----TKNMDPLNDNVTSLLNQSSDKFVADLWKDVD 628 (1184)
T ss_dssp HHHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEEEEECTTHH----HHHHCCCCHHHHHHHHTCSCHHHHHHHSCCT
T ss_pred HHHHHHHhCCCCCccCCCCCCCCCcEEEECCCceEEeccCCch----hhccCcccHHHHHHHHhCchHHHHHHhcccc
Confidence 987542 2221 235799999999999999 8889999999999999999999999999754
No 12
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=33.16 E-value=13 Score=23.13 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=11.8
Q ss_pred cccCCceeecCCCc
Q psy11163 92 TQWSPLVEGKPNGL 105 (148)
Q Consensus 92 ~hfag~V~Y~~~gf 105 (148)
..|+|+|+|..+|=
T Consensus 27 rkfagtvtytldgn 40 (85)
T 2kl8_A 27 RKFAGTVTYTLDGN 40 (85)
T ss_dssp TTTTCEEEEEECSS
T ss_pred HhhcceEEEEecCC
Confidence 46899999998874
No 13
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=27.44 E-value=39 Score=19.12 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=20.3
Q ss_pred HHHHHHhhcChhhHHHhccccccc
Q psy11163 120 CMEQLIGAWSIDWSIKLLIEAESI 143 (148)
Q Consensus 120 ~~~~l~~~S~n~~v~~Lf~~~~~~ 143 (148)
|++.-|+...-+.|+.|||.+-+.
T Consensus 5 Diir~irr~a~PVvsTlfP~AapL 28 (46)
T 2imu_A 5 DIIRAIRRIAVPVVSTLFPPAAPL 28 (46)
T ss_dssp HHHHHHHHHSHHHHHHHCSSTTHH
T ss_pred HHHHHHHHhhhhhhhccCCCcchH
Confidence 667778888899999999998773
No 14
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=21.82 E-value=24 Score=20.85 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.0
Q ss_pred CcHHHHHHHhcCCCccceechhhhhc
Q psy11163 45 DNTLCLQLVEGKPNGLLCVLDDQANW 70 (148)
Q Consensus 45 dn~~~l~ll~~~p~Gll~iLDee~~~ 70 (148)
.|.-.+|++..+..|+=..|.|+|.+
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhc
Confidence 56778999988889999999999875
Done!