RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11163
(148 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 129 bits (327), Expect = 6e-36
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523
Query: 63 VLDDQ 67
+LD++
Sbjct: 524 ILDEE 528
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 128 bits (324), Expect = 2e-35
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 398 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 457
Query: 63 VLDDQ 67
+LD+
Sbjct: 458 LLDEA 462
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 125 bits (315), Expect = 2e-34
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 63 VLDDQ 67
+LD++
Sbjct: 508 LLDEE 512
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 123 bits (311), Expect = 8e-34
Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 62
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 449 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVLD 507
Query: 63 VLDDQ 67
+LD++
Sbjct: 508 LLDEE 512
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 118 bits (299), Expect = 4e-32
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 59
FEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P G
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPG 504
Query: 60 LLCVLDDQ 67
LL +LD++
Sbjct: 505 LLALLDEE 512
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 118 bits (298), Expect = 4e-32
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 60
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 61 LCVLDDQ 67
L +LD+Q
Sbjct: 526 LALLDEQ 532
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 118 bits (298), Expect = 5e-32
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGL 60
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G+
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 525
Query: 61 LCVLDDQ 67
L +LD+Q
Sbjct: 526 LALLDEQ 532
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 117 bits (295), Expect = 1e-31
Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 61
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G++
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGIM 531
Query: 62 CVLDDQ 67
+L+++
Sbjct: 532 SILEEE 537
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 117 bits (295), Expect = 1e-31
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 3 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 61
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+L
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGIL 530
Query: 62 CVLDDQ 67
+L+++
Sbjct: 531 SILEEE 536
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 115 bits (290), Expect = 6e-31
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK--PN 58
+FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 475 SFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPP 534
Query: 59 GLLCVLDDQ 67
G+L +LD++
Sbjct: 535 GVLALLDEE 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.13
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 13 EHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSR 72
E LQ Q + + I+ R L + N LL VL + N
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKA 258
Query: 73 GNPM-VSC 79
N +SC
Sbjct: 259 WNAFNLSC 266
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural
genomics,MCSG, PSI, protein structure initiative; 2.00A
{Pseudomonas aeruginosa} SCOP: b.45.1.1
Length = 247
Score = 28.1 bits (61), Expect = 1.0
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 48 LCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQWSPL------VEGK 101
+L+ + +L + G P S V + + GR S + ++
Sbjct: 11 NARELLLKEYRAVLSTHSKKWP---GFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQAD 67
Query: 102 PNGLLCVLDDQAKRKHGICMEQL 124
P + V + A+ + L
Sbjct: 68 PRCSMLVGERGAEDIQAVGRLTL 90
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto
reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB:
1og6_A*
Length = 319
Score = 27.6 bits (62), Expect = 1.4
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 94 WSPLVEG------KPNGLLCVLDDQAKRKHGICMEQLIGAW 128
WS L G L L A+ + +EQ++ AW
Sbjct: 230 WSCLGGGRLFNDDYFQPLRDELAVVAEELNAGSIEQVVNAW 270
>4gie_A Prostaglandin F synthase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: NAP;
1.25A {Trypanosoma cruzi} PDB: 4fzi_A*
Length = 290
Score = 26.4 bits (59), Expect = 3.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 94 WSPLVEGKPNGLLC--VLDDQAKRKHGICMEQLIGAWSID 131
WSPL G+ G+L VL + AK KH Q++ W I
Sbjct: 196 WSPLGSGEEAGILKNHVLGEIAK-KHNKSPAQVVIRWDIQ 234
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 25.2 bits (55), Expect = 7.0
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 12 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 45
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.458
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,365,466
Number of extensions: 126994
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 22
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)