RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11163
(148 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 77.8 bits (191), Expect = 4e-18
Identities = 31/73 (42%), Positives = 47/73 (64%)
Query: 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 61
+FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448
Query: 62 CVLDDQANWSRGN 74
+LD+ ++
Sbjct: 449 SLLDEACLIAKST 461
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 72.1 bits (176), Expect = 3e-16
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 1 MTFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KP 57
+FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E P
Sbjct: 396 NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNP 455
Query: 58 NGLLCVLDDQANWSRGN 74
G+L +LD++ + +
Sbjct: 456 PGVLALLDEECWFPKAT 472
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 71.3 bits (174), Expect = 6e-16
Identities = 33/73 (45%), Positives = 47/73 (64%)
Query: 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 61
+FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+L
Sbjct: 423 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGIL 482
Query: 62 CVLDDQANWSRGN 74
+L+++ + + +
Sbjct: 483 SILEEECMFPKAD 495
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 71.3 bits (174), Expect = 7e-16
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 61
+FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP G+
Sbjct: 425 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIF 484
Query: 62 CVLDDQ 67
+L+++
Sbjct: 485 SILEEE 490
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 68.6 bits (167), Expect = 5e-15
Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 2 TFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 61
+FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K G+L
Sbjct: 386 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVL 444
Query: 62 CVLDDQ 67
+LD++
Sbjct: 445 DLLDEE 450
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 66.3 bits (161), Expect = 3e-14
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 1 MTFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPN 58
+FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +P
Sbjct: 417 NSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPP 476
Query: 59 GLLCVLDDQANWSRGN 74
G+L +LD+Q+ +
Sbjct: 477 GILALLDEQSVFPNAT 492
>d1mzra_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.4 bits (62), Expect = 0.31
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 3/118 (2%)
Query: 28 QEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPT 87
E KEG + I + + G+ V++ +
Sbjct: 122 MIELQKEG-LIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHP--LMQQRQLHAWNATH 178
Query: 88 GRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLLIEAESIEY 145
WSPL +G + K+G Q++ W +D + ++ ++ +
Sbjct: 179 KIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSR 236
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema
pallidum [TaxId: 160]}
Length = 240
Score = 27.8 bits (61), Expect = 0.50
Identities = 15/127 (11%), Positives = 43/127 (33%), Gaps = 6/127 (4%)
Query: 23 VFQYEQEEYNKEGIRWRHIEFSDNTLCLQ-LVEGKPNGLLC----VLDDQANWSRGNPMV 77
+ + +EE K+ I R +EF++ + ++ G + +V
Sbjct: 17 LLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQ-EHNGDLV 75
Query: 78 SCVFWMIKPTGRGETQWSPLVEGKPNGLLCVLDDQAKRKHGICMEQLIGAWSIDWSIKLL 137
S ++P + + + ++ + +D + + + + G + L
Sbjct: 76 SVGNVHVEPLALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLF 135
Query: 138 IEAESIE 144
E ++
Sbjct: 136 ATVEDVQ 142
>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 235
Score = 26.8 bits (59), Expect = 0.95
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 57 PNGLLCVLDDQANWSRGNPMVSCVFWMIKPTGRGETQWS--PLVEGKPNGLL-CVLDDQA 113
PNG L + + P W+ + T G WS + PNG L V Q
Sbjct: 96 PNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQF 155
Query: 114 KRKH 117
+
Sbjct: 156 YKAL 159
>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 1122
Score = 27.1 bits (60), Expect = 1.1
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 116 KHGICMEQLIGAWSIDWSIKLLIEAES 142
+E+ G WS D ++++ EAE+
Sbjct: 1096 LTARALERGNGEWSTDAALEVAHEAEA 1122
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.6 bits (56), Expect = 2.4
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 8 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 46
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d2gysa1 b.1.2.1 (A:1-103) Common beta-chain in the GM-CSF, IL-3
and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 23.3 bits (50), Expect = 8.9
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 47 TLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFW 82
TL ++ E + C L D WS P CV
Sbjct: 36 TLIRRVNEDLLEPVSCDLSDDMPWSA-CPHPRCVPR 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.458
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,175
Number of extensions: 26815
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 19
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.1 bits)