BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11165
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 106/139 (76%), Gaps = 4/139 (2%)
Query: 1 MLLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASF 60
+L+DQW+KKA LY T VLL+PLGDDFR++++ EWD Q +NYE LF H+NSQ +NV A F
Sbjct: 317 LLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQF 376
Query: 61 GTLADYFDTLKKAK--DERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELSGIL 118
GTL +YFD + +A+ + FP+LSGDFFTYAD+ DNYWSGYYTSRP++KRMDR L +
Sbjct: 377 GTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYV 436
Query: 119 RAADILFTLAWRGSDMIKR 137
RAA++L AW D + R
Sbjct: 437 RAAEMLS--AWHSWDGMAR 453
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 18/130 (13%)
Query: 114 LSGILRAADILFTLAWRGSDMIKRKYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQSL 173
L + + DI +T G IKR+ L K+PLQ N+YP+PS FIED RL+LL+ Q L
Sbjct: 794 LETHIDSGDIFYT-DLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPL 852
Query: 174 GVACLKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLGQGVMDNIPTLTLFRIVL 233
G + L G++ E++QDRRL DDERGLGQGV+DN P L ++R+VL
Sbjct: 853 GGSSLASGEL----------------EIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVL 896
Query: 234 ETRQTDCKVP 243
E + +C P
Sbjct: 897 E-KVNNCVRP 905
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 106/139 (76%), Gaps = 4/139 (2%)
Query: 1 MLLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASF 60
+L+DQW+KKA LY T VLL+PLGDDFR++++ EWD Q +NYE LF H+NSQ +NV A F
Sbjct: 287 LLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQF 346
Query: 61 GTLADYFDTLKKAK--DERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELSGIL 118
GTL +YFD + +A+ + FP+LSGDFFTYAD+ DNYWSGYYTSRP++KRMDR L +
Sbjct: 347 GTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYV 406
Query: 119 RAADILFTLAWRGSDMIKR 137
RAA++L AW D + R
Sbjct: 407 RAAEMLS--AWHSWDGMAR 423
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 18/130 (13%)
Query: 114 LSGILRAADILFTLAWRGSDMIKRKYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQSL 173
L + + DI +T G IKR+ L K+PLQ N+YP+PS FIED RL+LL+ Q L
Sbjct: 764 LETHIDSGDIFYT-DLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPL 822
Query: 174 GVACLKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLGQGVMDNIPTLTLFRIVL 233
G + L G++ E++QDRRL DDERGLGQGV+DN P L ++R+VL
Sbjct: 823 GGSSLASGEL----------------EIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVL 866
Query: 234 ETRQTDCKVP 243
E + +C P
Sbjct: 867 E-KVNNCVRP 875
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 106/139 (76%), Gaps = 4/139 (2%)
Query: 1 MLLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASF 60
+L+DQW+KKA LY T VLL+PLGDDFR++++ EWD Q +NYE LF H+NSQ +NV A F
Sbjct: 317 LLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQF 376
Query: 61 GTLADYFDTLKKAK--DERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELSGIL 118
GTL +YFD + +A+ + FP+LSGDFFTYAD+ DNYWSGYYTSRP++KRMDR L +
Sbjct: 377 GTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYV 436
Query: 119 RAADILFTLAWRGSDMIKR 137
RAA++L AW D + R
Sbjct: 437 RAAEMLS--AWHSWDGMAR 453
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 18/130 (13%)
Query: 114 LSGILRAADILFTLAWRGSDMIKRKYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQSL 173
L + + DI +T G IKR+ L K+PLQ N+YP+PS FIED RL+LL+ Q L
Sbjct: 794 LETHIDSGDIFYT-DLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPL 852
Query: 174 GVACLKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLGQGVMDNIPTLTLFRIVL 233
G + L G++ E++QDRRL DDERGLGQGV+DN P L ++R+VL
Sbjct: 853 GGSSLASGEL----------------EIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVL 896
Query: 234 ETRQTDCKVP 243
E + +C P
Sbjct: 897 E-KVNNCVRP 905
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 106/139 (76%), Gaps = 4/139 (2%)
Query: 1 MLLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASF 60
+L+DQW+KKA LY T VLL+PLGDDFR++++ EWD Q +NYE LF H+NSQ +NV A F
Sbjct: 317 LLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQF 376
Query: 61 GTLADYFDTLKKAK--DERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELSGIL 118
GTL +YFD + +A+ + FP+LSGDFFTYAD+ DNYWSGYYTSRP++KRMDR L +
Sbjct: 377 GTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYV 436
Query: 119 RAADILFTLAWRGSDMIKR 137
RAA++L AW D + R
Sbjct: 437 RAAEMLS--AWHSWDGMAR 453
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 18/130 (13%)
Query: 114 LSGILRAADILFTLAWRGSDMIKRKYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQSL 173
L + + DI +T G IKR+ L K+PLQ N+YP+PS FIED RL+LL+ Q L
Sbjct: 794 LETHIDSGDIFYT-DLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPL 852
Query: 174 GVACLKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLGQGVMDNIPTLTLFRIVL 233
G + L G++ E++QDRRL DDERGLGQGV+DN P L ++R+VL
Sbjct: 853 GGSSLASGEL----------------EIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVL 896
Query: 234 ETRQTDCKVP 243
E + +C P
Sbjct: 897 E-KVNNCVRP 905
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 106/139 (76%), Gaps = 4/139 (2%)
Query: 1 MLLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASF 60
+L+DQW+KKA LY T VLL+PLGDDFR++++ EWD Q +NYE LF H+NSQ +NV A F
Sbjct: 317 LLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQF 376
Query: 61 GTLADYFDTLKKAK--DERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELSGIL 118
GTL +YFD + +A+ + FP+LSGDFFTYAD+ DNYWSGYYTSRP++KRMDR L +
Sbjct: 377 GTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYV 436
Query: 119 RAADILFTLAWRGSDMIKR 137
RAA++L AW D + R
Sbjct: 437 RAAEMLS--AWHSWDGMAR 453
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 18/130 (13%)
Query: 114 LSGILRAADILFTLAWRGSDMIKRKYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQSL 173
L + + DI +T G IKR+ L K+PLQ N+YP+PS FIED RL+LL+ Q L
Sbjct: 794 LETHIDSGDIFYT-DLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPL 852
Query: 174 GVACLKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLGQGVMDNIPTLTLFRIVL 233
G + L G++ E++QDRRL DDERGLGQGV+DN P L ++R+VL
Sbjct: 853 GGSSLASGEL----------------EIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVL 896
Query: 234 ETRQTDCKVP 243
E + +C P
Sbjct: 897 E-KVNNCVRP 905
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 176 bits (447), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 106/139 (76%), Gaps = 4/139 (2%)
Query: 1 MLLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASF 60
+L+DQW+KKA LY T VLL+PLGD+FR++++ EWD Q +NYE LF H+NSQ +NV A F
Sbjct: 317 LLVDQWKKKAELYRTNVLLIPLGDNFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQF 376
Query: 61 GTLADYFDTLKKAK--DERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELSGIL 118
GTL +YFD + +A+ + FP+LSGDFFTYAD+ DNYWSGYYTSRP++KRMDR L +
Sbjct: 377 GTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYV 436
Query: 119 RAADILFTLAWRGSDMIKR 137
RAA++L AW D + R
Sbjct: 437 RAAEMLS--AWHSWDGMAR 453
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 77/130 (59%), Gaps = 18/130 (13%)
Query: 114 LSGILRAADILFTLAWRGSDMIKRKYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQSL 173
L + + DI +T G IKR+ L K+PLQ N+YP+PS FIED RL+LL+ Q L
Sbjct: 794 LETHIDSGDIFYT-DLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPL 852
Query: 174 GVACLKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLGQGVMDNIPTLTLFRIVL 233
G + L G++ E++QDRRL DDERGLGQGV+DN P L ++R+VL
Sbjct: 853 GGSSLASGEL----------------EIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVL 896
Query: 234 ETRQTDCKVP 243
E + +C P
Sbjct: 897 E-KVNNCVRP 905
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 104/139 (74%), Gaps = 4/139 (2%)
Query: 1 MLLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASF 60
+L+DQW+KKA LY T VLL+PLGDDFR++++ EWD Q +NYE LF H+NSQ +NV A F
Sbjct: 287 LLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQF 346
Query: 61 GTLADYFDTLKKAK--DERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELSGIL 118
GTL +YFD + +A+ + FP+LSGDFFTYAD+ DNYWSGYYTSRP++KR DR L +
Sbjct: 347 GTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRXDRVLXHYV 406
Query: 119 RAADILFTLAWRGSDMIKR 137
RAA+ L AW D + R
Sbjct: 407 RAAEXL--SAWHSWDGMAR 423
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 76/130 (58%), Gaps = 18/130 (13%)
Query: 114 LSGILRAADILFTLAWRGSDMIKRKYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQSL 173
L + + DI +T G IKR+ L K+PLQ N+YP+PS FIED RL+LL+ Q L
Sbjct: 764 LETHIDSGDIFYT-DLNGLQFIKRRRLDKLPLQANYYPIPSGXFIEDANTRLTLLTGQPL 822
Query: 174 GVACLKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLGQGVMDNIPTLTLFRIVL 233
G + L G++E+ QDRRL DDERGLGQGV+DN P L ++R+VL
Sbjct: 823 GGSSLASGELEIX----------------QDRRLASDDERGLGQGVLDNKPVLHIYRLVL 866
Query: 234 ETRQTDCKVP 243
E + +C P
Sbjct: 867 E-KVNNCVRP 875
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 282
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 16/74 (21%)
Query: 144 PLQGNFYPMPSAAFIEDTGRRLSLLSAQSLGVACLKPGQIEVTMPCDARVVGLNLGEVIQ 203
P+ GN+YP+ S +I D +L++L+ +S G + L+ G +E+ +
Sbjct: 168 PVAGNYYPVNSRIYITDGNMQLTVLTDRSQGGSSLRDGSLELMV---------------- 211
Query: 204 DRRLNQDDERGLGQ 217
RRL +DD RG+G+
Sbjct: 212 HRRLLKDDARGVGE 225
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 84
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 56 VHASFGTLADYFDTLKKAKDERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELS 115
V+ + T A Y L KA S+ DFF YAD +W+GY++SRP KR +R
Sbjct: 3 VNVLYSTPACYLWELNKA--NLSWSVKKDDFFPYADGPYMFWTGYFSSRPALKRYERLSY 60
Query: 116 GILRAADILFTLA 128
L+ + L LA
Sbjct: 61 NFLQVCNQLEALA 73
>pdb|1W26|A Chain A, Trigger Factor In Complex With The Ribosome Forms A
Molecular Cradle For Nascent Proteins
pdb|1W26|B Chain B, Trigger Factor In Complex With The Ribosome Forms A
Molecular Cradle For Nascent Proteins
pdb|2VRH|A Chain A, Structure Of The E. Coli Trigger Factor Bound To A
Translating Ribosome
Length = 432
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 22/168 (13%)
Query: 53 SYNVHASFGTLADYFDTLKKAKDERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDR 112
Y+ G A + LKK +ER P L+ +F +D G K +R
Sbjct: 220 EYHAENLKGKAAKFAINLKKV-EERELPELTAEFIKRFGVEDGSVEGLRAE--VRKNXER 276
Query: 113 ELSGILRAADILFTLAWRGSDMIKRKYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQS 172
EL +R + +K + ++ + ++ N +P AA I+ L +AQ
Sbjct: 277 ELKSAIR-------------NRVKSQAIEGL-VKANDIDVP-AALIDSEIDVLRRQAAQR 321
Query: 173 LG----VACLKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLG 216
G A P ++ VVGL LGEVI+ L D+ER G
Sbjct: 322 FGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKG 369
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 157 FIEDTGRRLSLLSAQSLGVACLKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLG 216
FI T R + +L ++ LKP + + CD +V L +I + + + G
Sbjct: 117 FIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQ 176
Query: 217 QGVMDNIPT 225
G+++ + T
Sbjct: 177 SGMVEFVAT 185
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 157 FIEDTGRRLSLLSAQSLGVACLKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLG 216
FI T R + +L ++ LKP + + CD +V L +I + + + G
Sbjct: 117 FIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQ 176
Query: 217 QGVMDNIPT 225
G+ + + T
Sbjct: 177 SGMTEXVAT 185
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 157 FIEDTGRRLSLLSAQSLGVACLKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLG 216
FI T R + +L ++ LKP + + CD +V L +I + + + G
Sbjct: 117 FIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQ 176
Query: 217 QGVMDNIPT 225
G+ + + T
Sbjct: 177 SGMTEYVAT 185
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 60 FGTLADYFDTLKKAKDERSF-PSLSGDFFTYADKDD---------NYWS----GYYTSRP 105
+G A+Y +TL ER P D F Y DKDD +YWS GY + P
Sbjct: 220 YGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDKDVLISYWSKGWWGYNLASP 279
Query: 106 FY 107
Y
Sbjct: 280 QY 281
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 60 FGTLADYFDTLKKAKDERSF-PSLSGDFFTYADKDD---------NYWS----GYYTSRP 105
+G A+Y +TL ER P D F Y DKDD +YWS GY + P
Sbjct: 203 YGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDKDVLISYWSKGWWGYNLASP 262
Query: 106 FY 107
Y
Sbjct: 263 QY 264
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 60 FGTLADYFDTLKKAKDERSF-PSLSGDFFTYADKDD---------NYWS----GYYTSRP 105
+G A+Y +TL ER P D F Y DKDD +YWS GY + P
Sbjct: 203 YGKFAEYANTLAAMAKERGLQPMAFNDGFYYEDKDDVQFDKDVLISYWSKGWWGYNLASP 262
Query: 106 FY 107
Y
Sbjct: 263 QY 264
>pdb|2HIV|A Chain A, Atp-Dependent Dna Ligase From S. Solfataricus
pdb|2HIX|A Chain A, Atp Dependent Dna Ligase From S. Solfataricus Bound To
Atp
Length = 621
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 57 HASFGTLADYFDTLKKAKDERSFPSLSGDFFTYADK 92
H F +A+YFD L+K +L D + +DK
Sbjct: 20 HMEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDK 55
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 9 KATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYN 55
+ LY T+ ++ +G DF+YE + W N + L +N+Q N
Sbjct: 254 QGKLYRTKHTVMTMGSDFQYENANTW---FKNLDKLIQLVNAQQRAN 297
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From
Nesterenkonia Sp
Length = 283
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 153 PSAAFIEDTGRRLSLLSAQSLGVACLKPGQIEVTMPCDARVVGLNLGEVIQDRR 206
P + D G + + Q LG ++PG + V +P ++ G + + +QDRR
Sbjct: 222 PEGGLVFDGGSVVVGPAGQPLGELGVEPGLLVVDLPDQSQDAGSDSADYLQDRR 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,431,469
Number of Sequences: 62578
Number of extensions: 308983
Number of successful extensions: 616
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 35
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)