RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11165
(244 letters)
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase,
golgi apparatus, membrane, signal-anchor, transmembrane;
HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1
b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A*
3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A*
1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A*
2alw_A* 2f18_A* ...
Length = 1045
Score = 134 bits (337), Expect = 5e-36
Identities = 78/132 (59%), Positives = 100/132 (75%), Gaps = 2/132 (1%)
Query: 1 MLLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASF 60
+L+DQW+KKA LY T VLL+PLGDDFR++++ EWD Q +NYE LF H+NSQ +NV A F
Sbjct: 317 LLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQF 376
Query: 61 GTLADYFDTLKKAKDER--SFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELSGIL 118
GTL +YFD + +A+ FP+LSGDFFTYAD+ DNYWSGYYTSRP++KRMDR L +
Sbjct: 377 GTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYV 436
Query: 119 RAADILFTLAWR 130
RAA++L
Sbjct: 437 RAAEMLSAWHSW 448
Score = 103 bits (258), Expect = 1e-25
Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 17/121 (14%)
Query: 118 LRAADILFTLAWRGSDMIKRKYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQSLGVAC 177
+ + DI +T G IKR+ L K+PLQ N+YP+PS FIED RL+LL+ Q LG +
Sbjct: 798 IDSGDIFYTDLN-GLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSS 856
Query: 178 LKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLGQGVMDNIPTLTLFRIVLETRQ 237
L G++E+ DRRL DDERGLGQGV+DN P L ++R+VLE
Sbjct: 857 LASGELEIMQ----------------DRRLASDDERGLGQGVLDNKPVLHIYRLVLEKVN 900
Query: 238 T 238
Sbjct: 901 N 901
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
a.8.3.1 c.6.2.1
Length = 84
Score = 107 bits (268), Expect = 3e-30
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 55 NVHASFGTLADYFDTLKKAKDERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDREL 114
V+ + T A Y L KA S+ DFF YAD +W+GY++SRP KR +R
Sbjct: 2 RVNVLYSTPACYLWELNKANL--SWSVKKDDFFPYADGPYMFWTGYFSSRPALKRYERLS 59
Query: 115 SGILRAADILFTLAWRGSD 133
L+ + L LA ++
Sbjct: 60 YNFLQVCNQLEALAGPAAN 78
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
b.30.5.6
Length = 282
Score = 92.8 bits (230), Expect = 9e-23
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 131 GSDMIKR--------KYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQSLGVACLKPGQ 182
G ++++R K + P+ GN+YP+ S +I D +L++L+ +S G + L+ G
Sbjct: 147 GREILERRRNYRPTWKLNQTEPVAGNYYPVNSRIYITDGNMQLTVLTDRSQGGSSLRDGS 206
Query: 183 IEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLGQGVMDNIPTLT---LFRIVLETRQT 238
+ E++ RRL +DD RG+G+ + L ++L+ ++T
Sbjct: 207 L----------------ELMVHRRLLKDDARGVGEPLNKEGSGLWVRGRHLVLLDKKET 249
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase;
1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Length = 923
Score = 65.3 bits (158), Expect = 3e-12
Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 11/141 (7%)
Query: 4 DQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASFGTL 63
+ ST+ LL+ G D + + + A N +
Sbjct: 233 KKLADAERFASTKHLLMMNGCDHQPVQL--------DVTKAIALANQLYP-DYEFVHSCF 283
Query: 64 ADYFDTLKKAKDERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELS-GILRAAD 122
DY L E ++ G+ + + ++R + K+ + +S + +
Sbjct: 284 EDYLADLADDLPEN-LSTVQGEITSQETDGWYTLANTASARIYLKQANTRVSRQLENITE 342
Query: 123 ILFTLAWRGSDMIKRKYLKKI 143
L +A+ + L+
Sbjct: 343 PLAAMAYEVTSTYPHDQLRYA 363
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
c.6.2.1
Length = 298
Score = 62.7 bits (152), Expect = 9e-12
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 1 MLLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYN 55
L + LY T+ ++ +G DF+YE + W N + L +N+Q N
Sbjct: 246 YFLKLATDQGKLYRTKHTVMTMGSDFQYENANTW---FKNLDKLIQLVNAQQRAN 297
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.55A {Enterococcus faecalis}
Length = 899
Score = 61.4 bits (148), Expect = 5e-11
Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 11/143 (7%)
Query: 2 LLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASFG 61
+ ST LL+ G D + + + A N
Sbjct: 211 WKQKLADVERYASTNHLLMMNGVDHQPVQR--------DITKAIALANELFP-EYEFIHS 261
Query: 62 TLADYFDTLKKAKDERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELSGILRAA 121
DY +++ E +++G+ + + ++R + K+ + ++ L
Sbjct: 262 NFDDYLKAVQEELPED-LGTVTGELTSQETDGWYTLANTSSARVYLKQWNTKVQRQLENI 320
Query: 122 DILF-TLAWRGSDMIKRKYLKKI 143
+A+ +
Sbjct: 321 AEPLAAMAYEVTGDYPHDQFDYA 343
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 5e-07
Identities = 55/336 (16%), Positives = 93/336 (27%), Gaps = 136/336 (40%)
Query: 13 YSTR-----------VLLVPLGDDFRYER-SEEWDAQMINYEALFAHLNSQPSYNVH--A 58
YSTR VLLVP F + E+++ + FA + +P+
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD-EPTTPAELVG 62
Query: 59 SF----------GTLADYFDTLKKAKD--ERSF----------PSLSGDFFTYADKDDNY 96
F + + L E + L + T K
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 97 WSGYYTS-----RPFYKRMDRELSGILRAADI----LFTLAWRGSDMIKRKYLKKIPLQG 147
Y T+ RPF K+ + S + RA L + + G QG
Sbjct: 123 IKNYITARIMAKRPFDKKSN---SALFRAVGEGNAQLVAI-FGG--------------QG 164
Query: 148 N----F---------YPMPSAAFIEDTGRRLSLLSAQSLGVACL---------------- 178
N F Y + I+ + LS L +L +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 179 KPGQ-----IEVTMP-----------CDARVVGLNLGEVIQDRRLNQDDERGL---GQGV 219
P + I ++ P A+++G GE+ + +G QG+
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL-------RSYLKGATGHSQGL 277
Query: 220 ---------------MDNIPT-LT-LFRIVLETRQT 238
++ +T LF I + +
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Score = 28.1 bits (62), Expect = 3.6
Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 81/197 (41%)
Query: 23 GDDFRYERSEE----WD-AQMINYEAL-FAHL----NSQPSYNVHASFGTLADYFDTLKK 72
G D Y+ S+ W+ A + F+ L N+ + +H FG +K
Sbjct: 1632 GMDL-YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH--FGG--------EK 1680
Query: 73 AKDERS-FPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELSGILRAADILFTLAWRG 131
K R + ++ + D G + +K ++ + +R
Sbjct: 1681 GKRIRENYSAM-----IFETIVD----GKLKTEKIFKEINEHSTSYT----------FRS 1721
Query: 132 SDMIKRKYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLS----AQ----SLGVACLKPGQI 183
LLS Q + A + +
Sbjct: 1722 EK--------------------------------GLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 184 EVTMPCDARVVGLNLGE 200
+ +P DA G +LGE
Sbjct: 1750 KGLIPADATFAGHSLGE 1766
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.002
Identities = 26/194 (13%), Positives = 60/194 (30%), Gaps = 52/194 (26%)
Query: 2 LLDQWRKKAT--LYS-TRVLLVPLGDDF--------RYERSEEWDAQMI------NYEAL 44
L+++ K++T + S L V L +++ Y + +D+ + Y
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--F 473
Query: 45 FAHLNSQPSYNVHASFGTLADYFDTLKK---------AKDERSFPSLSGDFFTYADKDD- 94
++H+ + H + + K + +
Sbjct: 474 YSHI----GH--HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 95 NYWSGYYT-SRPFYKRMDRELSGILRAADILFTLAWRGSDMIKRKY--LKKIPLQGNFYP 151
++ Y + P Y+R+ + L ++I KY L +I L
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKI---------EENLICSKYTDLLRIALMA---- 574
Query: 152 MPSAAFIEDTGRRL 165
A E+ +++
Sbjct: 575 -EDEAIFEEAHKQV 587
Score = 36.4 bits (83), Expect = 0.007
Identities = 21/162 (12%), Positives = 42/162 (25%), Gaps = 40/162 (24%)
Query: 18 LLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASFGTLADYFDTLKKAKDE- 76
LL + D ++ Y + + + ++ + Y + K ++E
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIPSI------YLELKVKLENEY 443
Query: 77 -------------RSFPSLSGDFFTYADKDDNYWS---GYYTSRPFYKRMDRELSGI--- 117
++F S D D Y+ G++ + +
Sbjct: 444 ALHRSIVDHYNIPKTFDS--DDLI--PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 118 ---LRAADILFTLAWRGSDMIK------RKYLKKIPLQGNFY 150
L + AW S I + Y I Y
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 28.2 bits (62), Expect = 2.4
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 3/115 (2%)
Query: 27 RYERSEEWDAQMINYEALFAHLNSQPSYNVHASFGTLADYFDTLKKAKDE-RSFPS-LSG 84
+SEE+ ++ Y+ A L + FG + +D L + PS +
Sbjct: 138 ETLKSEEFQKRLHPYKDFIATLGKLSGLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATE 197
Query: 85 DFFTYADKDDNYWSGYYTSRPFYKRMDRELSGILRAADILFTLAWRGSDMIKRKY 139
D T + K R G+L +IL + +K
Sbjct: 198 DTMTKLRELSELSLLSLYGIHKQKEKSRLQGGVL-VNEILNHMKRATQIPSYKKL 251
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 27.2 bits (61), Expect = 5.5
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 54 YNVHASFGTLADYFDTLKKAKDER 77
Y ++ +GTL D F L +A +R
Sbjct: 72 YKINPDYGTLED-FHKLVEAAHQR 94
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 5.8
Identities = 16/111 (14%), Positives = 29/111 (26%), Gaps = 33/111 (29%)
Query: 102 TSRPFYKRMDR------ELSGIL----------RAADILFTLAWRG--SDMIKRKYLKKI 143
SRP R + +GI I +A +D K + +
Sbjct: 1166 MSRPATT--TRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATD----KIGRSV 1219
Query: 144 PL--QGNFYPM-------PSAAFIEDTGRRLSLLSAQSLGVACLKPGQIEV 185
P +G A+ + R L + + ++E
Sbjct: 1220 PAPGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEA 1270
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 26.7 bits (60), Expect = 7.3
Identities = 5/24 (20%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 54 YNVHASFGTLADYFDTLKKAKDER 77
Y+ A +G+ + F + +A +
Sbjct: 60 YSFKAEYGSERE-FKEMIEAFHDS 82
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 26.4 bits (58), Expect = 9.5
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 21 PLGDDFRYERSEEWDAQMINYEALFAHLNSQPSY-NVHASFGTLADYFDTLKKAKDER 77
P+G R R+ A + +A + + + ++H + GTL D FD +
Sbjct: 277 PIGTTHRKGRNNTLSATGDDVGVPWAIGSPEGGHDSIHPALGTLDD-FDHFVTEAGKL 333
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.419
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,827,262
Number of extensions: 225708
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 33
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)