RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11165
(244 letters)
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 381
Score = 113 bits (283), Expect = 5e-30
Identities = 56/94 (59%), Positives = 73/94 (77%), Gaps = 2/94 (2%)
Query: 1 MLLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASF 60
+L+DQW+KKA LY T VLL+PLGDDFR++++ EWD Q +NYE LF H+NSQ +NV A F
Sbjct: 287 LLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQF 346
Query: 61 GTLADYFDTLKKAKDER--SFPSLSGDFFTYADK 92
GTL +YFD + +A+ FP+LSGDFFTYAD+
Sbjct: 347 GTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADR 380
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 522
Score = 105 bits (263), Expect = 9e-27
Identities = 53/122 (43%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 118 LRAADILFTLAWRGSDMIKRKYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQSLGVAC 177
+ + DI +T G IKR+ L K+PLQ N+YP+PS FIED RL+LL+ Q LG +
Sbjct: 276 IDSGDIFYTDLN-GLQFIKRRRLDKLPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSS 334
Query: 178 LKPGQIEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLGQGVMDNIPTLTLFRIVLETRQ 237
L G++E+ DRRL DDERGLGQGV+DN P L ++R+VLE
Sbjct: 335 LASGELEIMQ----------------DRRLASDDERGLGQGVLDNKPVLHIYRLVLEKVN 378
Query: 238 TD 239
Sbjct: 379 NC 380
>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
{Cow (Bos taurus) [TaxId: 9913]}
Length = 330
Score = 93.2 bits (231), Expect = 5e-23
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 1 MLLDQWRKKATLYSTRVLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASF 60
L + LY T+ ++ +G DF+YE + W N + L +N+Q NV +
Sbjct: 245 YFLKLATDQGKLYRTKHTVMTMGSDFQYENANTW---FKNLDKLIQLVNAQIRVNV--LY 299
Query: 61 GTLADYFDTLKKAKDERSFPSLSGDFFTYADK 92
T A Y L KA + DFF YAD
Sbjct: 300 STPACYLWELNKANLS--WSVKKDDFFPYADG 329
>g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal
alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
Length = 490
Score = 75.2 bits (184), Expect = 3e-16
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 131 GSDMIKR--------KYLKKIPLQGNFYPMPSAAFIEDTGRRLSLLSAQSLGVACLKPGQ 182
G ++++R K + P+ GN+YP+ S +I D +L++L+ +S G + L+ G
Sbjct: 241 GREILERRRNYRPTWKLNQTEPVAGNYYPVNSRIYITDGNMQLTVLTDRSQGGSSLRDGS 300
Query: 183 IEVTMPCDARVVGLNLGEVIQDRRLNQDDERGLGQGVMDNIPTLT---LFRIVLETRQT 238
+E+ + RRL +DD RG+G+ + L ++L+ ++T
Sbjct: 301 LELMV----------------HRRLLKDDARGVGEPLNKEGSGLWVRGRHLVLLDKKET 343
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 111
Score = 60.0 bits (145), Expect = 2e-12
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 94 DNYWSGYYTSRPFYKRMDRELSGILRAADILFTLAWR 130
DNYWSGYYTSRP++KRMDR L +RAA++L
Sbjct: 1 DNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSW 37
>g1o7d.1 a.8.3.1 (B:385-422,C:431-487) Lysosomal alpha-mannosidase
{Cow (Bos taurus) [TaxId: 9913]}
Length = 95
Score = 59.2 bits (143), Expect = 2e-12
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 96 YWSGYYTSRPFYKRMDRELSGILRAADILFTLAWRGSDM 134
+W+GY++SRP KR +R L+ + L LA D
Sbjct: 3 FWTGYFSSRPALKRYERLSYNFLQVCNQLEALAGPAGDS 41
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Length = 310
Score = 44.7 bits (105), Expect = 4e-06
Identities = 13/108 (12%), Positives = 25/108 (23%), Gaps = 12/108 (11%)
Query: 17 VLLVPLGDDFRYERSEEWDAQMINYEALFAHLNSQPSYNVHASFGTLADYFDTLKKAKDE 76
V + + EW + F + S N T ++Y +
Sbjct: 210 VFHDDGEKFGVWPGTYEWVYEKGWLREFFDAITSNEKIN----LMTYSEYLSKFT-PRGL 264
Query: 77 RSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRMDRELSGILRAADIL 124
P S + + WS + +L +
Sbjct: 265 VYLPIASY-------FEMSEWSLPAKQAKLFVEFVEQLKEEGKFEKYR 305
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.2 bits (60), Expect = 1.4
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 69 TLKKAKDERSFPSLSGDFFT-----YADKDDNYWSGYYTSRPFYKRMDRELSGILR 119
TL + K E D+F+ + +N ++ K++ + +G+ R
Sbjct: 6 TLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYR 61
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase
{Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis) [TaxId: 228]}
Length = 354
Score = 26.8 bits (58), Expect = 3.0
Identities = 5/58 (8%), Positives = 12/58 (20%), Gaps = 1/58 (1%)
Query: 53 SYNVHASFGTLADYFDTLKKAKDERSFPSLSGDFFTYADKDDNYWSGYYTSRPFYKRM 110
SY + + G A F + + + + +
Sbjct: 54 SYELQSRGGNRAQ-FIDMVNRCSAAGVDIYVDTLINHMAAGSGTGTAGNSFGNKSFPI 110
>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan
maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
Length = 357
Score = 25.6 bits (55), Expect = 6.8
Identities = 5/85 (5%), Positives = 13/85 (15%), Gaps = 7/85 (8%)
Query: 53 SYNVHASFGTLADYFDTLKKAKDERSFPSL-------SGDFFTYADKDDNYWSGYYTSRP 105
+N + +G+ A + + +
Sbjct: 82 DFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCA 141
Query: 106 FYKRMDRELSGILRAADILFTLAWR 130
+ R L
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTG 166
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.419
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 931,075
Number of extensions: 42748
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 12
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)