Query psy11166
Match_columns 1746
No_of_seqs 861 out of 3140
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 19:44:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2574|consensus 100.0 4E-137 1E-141 1170.3 27.5 444 1178-1654 47-490 (492)
2 COG1498 SIK1 Protein implicate 100.0 4E-68 8.6E-73 614.0 22.1 287 1218-1539 108-395 (395)
3 PRK14552 C/D box methylation g 100.0 1.2E-65 2.5E-70 606.0 21.7 343 1129-1513 34-398 (414)
4 KOG2573|consensus 100.0 8.6E-64 1.9E-68 567.4 19.1 336 1128-1497 59-413 (498)
5 KOG2574|consensus 100.0 1.8E-61 3.8E-66 552.2 11.6 222 20-247 257-486 (492)
6 KOG2572|consensus 100.0 2.3E-59 5E-64 531.4 18.0 329 1128-1500 56-402 (498)
7 KOG0008|consensus 100.0 5.1E-46 1.1E-50 463.0 20.5 362 365-746 1144-1505(1563)
8 PF01798 Nop: Putative snoRNA 100.0 8.4E-46 1.8E-50 386.9 6.0 149 1321-1497 1-150 (150)
9 PF09785 Prp31_C: Prp31 C term 100.0 8.3E-43 1.8E-47 353.4 8.0 124 1499-1627 1-124 (124)
10 PF09785 Prp31_C: Prp31 C term 100.0 1.6E-41 3.4E-46 344.1 8.5 118 96-218 1-118 (124)
11 KOG1474|consensus 99.9 1.2E-26 2.7E-31 289.0 11.6 212 514-726 6-327 (640)
12 PF05434 Tmemb_9: TMEM9; Inte 99.9 4E-23 8.7E-28 214.0 6.1 82 1664-1745 45-149 (149)
13 COG5076 Transcription factor i 99.9 1.3E-22 2.8E-27 239.4 10.7 201 514-722 162-362 (371)
14 cd05511 Bromo_TFIID Bromodomai 99.9 2.8E-22 6E-27 201.5 10.9 112 497-612 1-112 (112)
15 cd05497 Bromo_Brdt_I_like Brom 99.9 4.1E-22 8.9E-27 198.9 10.6 100 496-599 5-106 (107)
16 cd05505 Bromo_WSTF_like Bromod 99.9 4.4E-22 9.5E-27 195.6 9.4 95 499-597 3-97 (97)
17 KOG4007|consensus 99.9 1.2E-22 2.6E-27 215.6 5.2 83 1664-1746 124-229 (229)
18 cd05508 Bromo_RACK7 Bromodomai 99.9 6E-22 1.3E-26 195.4 9.8 97 495-596 2-98 (99)
19 cd05511 Bromo_TFIID Bromodomai 99.9 2.1E-21 4.6E-26 195.1 11.8 111 623-734 1-111 (112)
20 cd05497 Bromo_Brdt_I_like Brom 99.9 1.4E-21 3.1E-26 195.1 10.3 100 622-722 5-106 (107)
21 cd05496 Bromo_WDR9_II Bromodom 99.9 2E-21 4.3E-26 197.5 11.4 105 495-603 4-109 (119)
22 cd05516 Bromo_SNF2L2 Bromodoma 99.8 1.7E-21 3.7E-26 194.3 9.8 103 497-599 2-106 (107)
23 cd05495 Bromo_cbp_like Bromodo 99.8 3.4E-21 7.4E-26 192.5 10.9 101 496-599 3-105 (108)
24 cd05503 Bromo_BAZ2A_B_like Bro 99.8 3.3E-21 7.3E-26 188.9 9.3 95 499-597 3-97 (97)
25 cd05496 Bromo_WDR9_II Bromodom 99.8 1.1E-20 2.4E-25 192.1 12.6 106 623-729 6-112 (119)
26 cd05507 Bromo_brd8_like Bromod 99.8 5.7E-21 1.2E-25 189.7 10.3 100 496-599 3-102 (104)
27 cd05508 Bromo_RACK7 Bromodomai 99.8 5E-21 1.1E-25 189.0 9.8 96 622-719 3-98 (99)
28 cd05510 Bromo_SPT7_like Bromod 99.8 7.9E-21 1.7E-25 191.2 10.7 104 494-600 5-109 (112)
29 cd05515 Bromo_polybromo_V Brom 99.8 5.5E-21 1.2E-25 190.0 9.4 101 498-598 2-104 (105)
30 cd05525 Bromo_ASH1 Bromodomain 99.8 8.5E-21 1.8E-25 189.3 10.3 101 496-596 2-104 (106)
31 cd05509 Bromo_gcn5_like Bromod 99.8 8.4E-21 1.8E-25 186.7 10.1 99 497-599 2-100 (101)
32 cd05504 Bromo_Acf1_like Bromod 99.8 1.1E-20 2.3E-25 190.9 10.9 101 496-600 12-112 (115)
33 cd05505 Bromo_WSTF_like Bromod 99.8 7.3E-21 1.6E-25 187.1 9.3 93 627-720 5-97 (97)
34 cd05495 Bromo_cbp_like Bromodo 99.8 1.6E-20 3.5E-25 187.7 11.3 101 623-723 4-106 (108)
35 cd05519 Bromo_SNF2 Bromodomain 99.8 1.1E-20 2.4E-25 187.0 9.3 101 497-597 1-103 (103)
36 cd05513 Bromo_brd7_like Bromod 99.8 1.4E-20 3.1E-25 185.4 9.2 95 497-595 2-96 (98)
37 cd05499 Bromo_BDF1_2_II Bromod 99.8 1.7E-20 3.6E-25 185.1 9.6 98 499-597 3-102 (102)
38 cd05517 Bromo_polybromo_II Bro 99.8 1.4E-20 3E-25 186.9 8.8 98 498-595 2-101 (103)
39 cd05520 Bromo_polybromo_III Br 99.8 1.6E-20 3.4E-25 186.4 9.2 96 501-596 5-102 (103)
40 cd05512 Bromo_brd1_like Bromod 99.8 1.8E-20 4E-25 184.5 8.5 94 497-594 2-95 (98)
41 cd05507 Bromo_brd8_like Bromod 99.8 3.6E-20 7.8E-25 184.0 10.5 99 623-722 4-102 (104)
42 cd05510 Bromo_SPT7_like Bromod 99.8 3.5E-20 7.6E-25 186.6 10.2 104 620-724 5-110 (112)
43 cd05518 Bromo_polybromo_IV Bro 99.8 3.7E-20 8.1E-25 183.8 9.1 96 501-596 5-102 (103)
44 cd05528 Bromo_AAA Bromodomain; 99.8 5.7E-20 1.2E-24 185.1 10.2 100 496-599 3-106 (112)
45 cd05524 Bromo_polybromo_I Brom 99.8 4.8E-20 1E-24 185.8 9.7 102 499-600 5-108 (113)
46 cd05498 Bromo_Brdt_II_like Bro 99.8 5.9E-20 1.3E-24 181.0 10.0 98 499-597 3-102 (102)
47 cd05502 Bromo_tif1_like Bromod 99.8 8.3E-20 1.8E-24 182.4 11.1 98 497-599 5-105 (109)
48 cd05506 Bromo_plant1 Bromodoma 99.8 5.3E-20 1.1E-24 180.3 9.3 96 498-597 2-99 (99)
49 cd05504 Bromo_Acf1_like Bromod 99.8 9.3E-20 2E-24 184.2 10.2 97 626-723 16-112 (115)
50 cd05509 Bromo_gcn5_like Bromod 99.8 1.1E-19 2.4E-24 178.8 10.3 97 626-723 5-101 (101)
51 cd05503 Bromo_BAZ2A_B_like Bro 99.8 9.4E-20 2E-24 178.7 9.2 93 627-720 5-97 (97)
52 cd05528 Bromo_AAA Bromodomain; 99.8 9.9E-20 2.1E-24 183.3 9.4 103 622-725 3-109 (112)
53 cd05512 Bromo_brd1_like Bromod 99.8 8.7E-20 1.9E-24 179.8 8.4 93 624-717 3-95 (98)
54 cd05500 Bromo_BDF1_2_I Bromodo 99.8 1.6E-19 3.5E-24 178.8 10.3 97 497-597 5-103 (103)
55 KOG1472|consensus 99.8 7.8E-20 1.7E-24 225.8 9.9 95 632-726 615-709 (720)
56 cd05513 Bromo_brd7_like Bromod 99.8 1.3E-19 2.7E-24 178.8 9.3 93 624-717 3-95 (98)
57 cd05501 Bromo_SP100C_like Brom 99.8 1.8E-19 3.9E-24 178.9 10.1 94 500-600 6-99 (102)
58 cd05516 Bromo_SNF2L2 Bromodoma 99.8 2.1E-19 4.6E-24 179.4 9.8 100 623-722 6-106 (107)
59 KOG1474|consensus 99.8 1.8E-19 3.9E-24 225.3 10.9 103 494-600 220-324 (640)
60 smart00297 BROMO bromo domain. 99.8 2.9E-19 6.3E-24 175.3 9.9 101 495-599 6-106 (107)
61 cd05522 Bromo_Rsc1_2_II Bromod 99.8 3.7E-19 8.1E-24 176.8 9.5 99 498-596 3-103 (104)
62 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 4E-19 8.6E-24 177.5 9.5 100 497-598 2-103 (106)
63 cd05502 Bromo_tif1_like Bromod 99.8 6.3E-19 1.4E-23 176.1 10.6 96 627-724 9-107 (109)
64 cd05525 Bromo_ASH1 Bromodomain 99.8 7E-19 1.5E-23 175.7 10.2 98 622-719 6-104 (106)
65 cd05529 Bromo_WDR9_I_like Brom 99.8 7.6E-19 1.6E-23 180.6 10.5 98 501-599 29-127 (128)
66 cd05515 Bromo_polybromo_V Brom 99.8 7.2E-19 1.6E-23 175.0 9.9 98 623-720 5-103 (105)
67 cd05499 Bromo_BDF1_2_II Bromod 99.8 6.5E-19 1.4E-23 173.9 9.4 84 637-720 17-102 (102)
68 cd05506 Bromo_plant1 Bromodoma 99.8 1.2E-18 2.5E-23 170.8 9.6 93 627-720 5-99 (99)
69 cd05517 Bromo_polybromo_II Bro 99.8 1.1E-18 2.4E-23 173.3 9.5 97 622-718 4-101 (103)
70 cd05500 Bromo_BDF1_2_I Bromodo 99.8 1.2E-18 2.6E-23 172.5 9.6 92 627-719 9-102 (103)
71 cd05520 Bromo_polybromo_III Br 99.8 1.2E-18 2.6E-23 173.1 9.3 83 637-719 20-102 (103)
72 cd05501 Bromo_SP100C_like Brom 99.8 2.3E-18 5E-23 171.0 10.6 94 627-724 7-100 (102)
73 cd05518 Bromo_polybromo_IV Bro 99.8 1.7E-18 3.8E-23 172.0 9.6 96 623-718 5-101 (103)
74 cd05498 Bromo_Brdt_II_like Bro 99.8 2.1E-18 4.5E-23 170.1 9.4 92 628-720 6-102 (102)
75 smart00297 BROMO bromo domain. 99.8 3.4E-18 7.5E-23 167.7 10.6 101 621-722 6-106 (107)
76 cd05524 Bromo_polybromo_I Brom 99.7 3.2E-18 6.8E-23 172.7 10.1 87 638-724 23-109 (113)
77 cd05519 Bromo_SNF2 Bromodomain 99.7 3.7E-18 8E-23 169.1 9.3 98 622-719 4-102 (103)
78 cd05529 Bromo_WDR9_I_like Brom 99.7 6.2E-18 1.3E-22 173.9 10.6 85 637-721 41-126 (128)
79 PF08060 NOSIC: NOSIC (NUC001) 99.7 2.9E-18 6.3E-23 152.1 6.7 53 1227-1279 1-53 (53)
80 cd05492 Bromo_ZMYND11 Bromodom 99.7 1.3E-17 2.8E-22 167.5 9.6 100 499-601 3-107 (109)
81 cd04369 Bromodomain Bromodomai 99.7 1.5E-17 3.2E-22 157.8 8.9 97 499-597 3-99 (99)
82 cd05522 Bromo_Rsc1_2_II Bromod 99.7 2.6E-17 5.6E-22 163.8 9.8 98 622-719 5-103 (104)
83 PF00439 Bromodomain: Bromodom 99.7 2.4E-17 5.3E-22 155.2 7.9 84 501-588 1-84 (84)
84 cd05492 Bromo_ZMYND11 Bromodom 99.7 7.9E-17 1.7E-21 161.9 10.5 98 625-723 3-106 (109)
85 cd05521 Bromo_Rsc1_2_I Bromodo 99.7 6.1E-17 1.3E-21 161.9 9.4 82 637-720 21-102 (106)
86 cd04369 Bromodomain Bromodomai 99.7 2.2E-16 4.8E-21 149.8 8.7 86 634-719 11-98 (99)
87 PF00439 Bromodomain: Bromodom 99.6 2.6E-16 5.6E-21 148.3 8.4 83 628-711 2-84 (84)
88 cd05526 Bromo_polybromo_VI Bro 99.6 6.6E-16 1.4E-20 155.3 10.0 102 496-599 3-106 (110)
89 KOG0008|consensus 99.6 5.8E-16 1.3E-20 196.6 4.5 174 492-701 1379-1552(1563)
90 cd05526 Bromo_polybromo_VI Bro 99.5 2.9E-14 6.4E-19 143.6 9.8 84 638-723 24-107 (110)
91 COG5076 Transcription factor i 99.5 1.5E-14 3.3E-19 171.4 8.5 197 528-726 43-251 (371)
92 KOG1245|consensus 99.5 2.3E-14 5E-19 189.9 7.1 94 501-599 1306-1399(1404)
93 KOG1245|consensus 99.4 1.3E-13 2.8E-18 183.0 6.9 95 627-723 1306-1400(1404)
94 KOG1828|consensus 99.4 1.1E-13 2.4E-18 160.6 4.7 196 518-714 37-298 (418)
95 KOG1827|consensus 99.3 3E-12 6.4E-17 157.7 5.1 226 496-721 52-293 (629)
96 KOG1472|consensus 99.2 9E-12 2E-16 155.4 5.4 101 496-600 606-706 (720)
97 KOG1827|consensus 99.1 1E-10 2.2E-15 144.5 8.0 154 562-722 3-157 (629)
98 PRK14552 C/D box methylation g 98.9 6.1E-10 1.3E-14 134.2 4.3 89 20-111 300-399 (414)
99 COG1498 SIK1 Protein implicate 98.9 1.1E-09 2.4E-14 129.7 3.8 92 39-136 303-395 (395)
100 PF15288 zf-CCHC_6: Zinc knuck 98.8 1E-09 2.2E-14 92.5 1.9 38 374-411 1-39 (40)
101 cd05494 Bromodomain_1 Bromodom 98.8 2.1E-09 4.6E-14 109.4 3.9 77 500-577 4-89 (114)
102 KOG0386|consensus 98.8 7.4E-09 1.6E-13 131.4 8.4 103 499-601 1027-1131(1157)
103 PF01798 Nop: Putative snoRNA 98.8 1.5E-09 3.2E-14 115.3 1.6 84 10-93 58-149 (150)
104 cd05494 Bromodomain_1 Bromodom 98.7 5.9E-09 1.3E-13 106.2 2.9 77 622-700 4-89 (114)
105 KOG0955|consensus 98.6 4.9E-08 1.1E-12 127.1 6.2 86 516-601 581-666 (1051)
106 KOG0955|consensus 98.5 2.2E-07 4.8E-12 121.1 9.7 91 633-723 575-665 (1051)
107 cd05491 Bromo_TBP7_like Bromod 98.5 7.6E-08 1.6E-12 98.5 3.5 42 539-580 63-104 (119)
108 cd05491 Bromo_TBP7_like Bromod 98.5 2.1E-07 4.5E-12 95.4 6.1 41 662-702 63-103 (119)
109 KOG0386|consensus 98.4 1.9E-07 4.2E-12 119.0 4.9 88 637-724 1044-1131(1157)
110 COG5179 TAF1 Transcription ini 98.3 1.9E-07 4.2E-12 113.3 0.4 48 351-398 910-961 (968)
111 KOG1828|consensus 97.4 2.9E-05 6.2E-10 92.1 -0.3 89 633-721 29-117 (418)
112 KOG1832|consensus 95.8 0.0049 1.1E-07 79.0 2.3 16 571-586 1234-1249(1516)
113 KOG2573|consensus 93.8 0.036 7.8E-07 66.9 2.5 41 53-93 372-412 (498)
114 PF10446 DUF2457: Protein of u 93.6 0.066 1.4E-06 65.7 4.3 17 731-747 35-51 (458)
115 KOG2572|consensus 93.4 0.046 1E-06 66.0 2.5 55 43-97 347-402 (498)
116 KOG1832|consensus 92.7 0.11 2.4E-06 67.4 4.5 21 557-577 1234-1254(1516)
117 PF04931 DNA_pol_phi: DNA poly 92.4 0.12 2.6E-06 68.4 4.6 11 376-386 293-303 (784)
118 KOG0732|consensus 91.0 0.28 6.1E-06 66.0 5.7 79 501-579 515-601 (1080)
119 cd05493 Bromo_ALL-1 Bromodomai 89.9 0.38 8.2E-06 51.3 4.4 64 663-726 59-122 (131)
120 PF10446 DUF2457: Protein of u 89.5 0.15 3.3E-06 62.7 1.3 17 815-831 37-53 (458)
121 cd05493 Bromo_ALL-1 Bromodomai 88.8 0.47 1E-05 50.6 4.2 61 540-600 59-119 (131)
122 PF04931 DNA_pol_phi: DNA poly 87.6 0.64 1.4E-05 61.9 5.3 11 555-565 406-416 (784)
123 KOG2038|consensus 82.5 0.91 2E-05 59.1 3.0 27 257-291 255-281 (988)
124 KOG0644|consensus 81.4 1.1 2.3E-05 58.8 3.1 62 659-720 1049-1110(1113)
125 KOG2051|consensus 76.0 2.6 5.7E-05 56.7 4.3 27 684-710 819-845 (1128)
126 KOG1991|consensus 75.9 18 0.00038 49.2 11.5 40 535-578 674-715 (1010)
127 KOG0262|consensus 75.3 9.3 0.0002 52.5 8.8 24 1013-1037 1435-1458(1640)
128 KOG3794|consensus 70.1 2.2 4.7E-05 52.2 1.4 25 374-398 124-148 (453)
129 KOG2038|consensus 69.8 1.9 4.1E-05 56.4 0.9 22 516-537 482-506 (988)
130 KOG1999|consensus 69.5 4 8.6E-05 54.7 3.7 19 1020-1038 276-294 (1024)
131 PF00098 zf-CCHC: Zinc knuckle 69.2 2.7 5.8E-05 30.9 1.2 18 375-394 1-18 (18)
132 PTZ00482 membrane-attack compl 68.1 13 0.00027 50.3 7.8 21 890-910 257-277 (844)
133 KOG0732|consensus 68.1 4 8.8E-05 55.7 3.4 63 640-702 532-601 (1080)
134 PF04147 Nop14: Nop14-like fam 65.6 13 0.00027 50.6 7.3 66 1256-1335 536-601 (840)
135 KOG0644|consensus 64.4 6.8 0.00015 51.9 4.2 59 537-595 1050-1108(1113)
136 KOG4264|consensus 63.5 5.7 0.00012 50.2 3.2 31 761-791 84-115 (694)
137 COG5271 MDN1 AAA ATPase contai 60.8 7.1 0.00015 55.3 3.5 123 741-875 3944-4077(4600)
138 KOG0943|consensus 60.1 6.4 0.00014 53.4 2.9 55 12-69 517-576 (3015)
139 KOG0943|consensus 57.1 14 0.0003 50.5 5.1 9 908-916 1931-1939(3015)
140 KOG1999|consensus 53.1 7.4 0.00016 52.4 1.9 10 957-966 162-171 (1024)
141 PF09073 BUD22: BUD22; InterP 52.0 16 0.00035 45.9 4.6 21 882-903 283-304 (432)
142 KOG2051|consensus 51.3 24 0.00052 48.3 6.0 7 568-574 606-612 (1128)
143 PF09026 CENP-B_dimeris: Centr 51.2 5.1 0.00011 41.0 0.0 14 876-889 46-59 (101)
144 KOG2014|consensus 45.5 21 0.00045 43.3 3.8 75 1298-1373 228-306 (331)
145 PF05764 YL1: YL1 nuclear prot 44.6 16 0.00034 42.8 2.6 8 1101-1108 225-232 (240)
146 PF04147 Nop14: Nop14-like fam 40.2 65 0.0014 44.1 7.7 18 1522-1539 782-805 (840)
147 PF03153 TFIIA: Transcription 36.6 12 0.00025 45.9 0.0 13 559-571 8-20 (375)
148 PF02724 CDC45: CDC45-like pro 35.3 24 0.00052 46.5 2.5 12 1036-1047 337-348 (622)
149 KOG0262|consensus 34.7 72 0.0016 44.7 6.5 13 320-332 663-675 (1640)
150 PF13917 zf-CCHC_3: Zinc knuck 34.4 23 0.00049 31.6 1.4 30 374-405 4-35 (42)
151 PF14392 zf-CCHC_4: Zinc knuck 33.6 17 0.00037 32.6 0.6 21 372-394 29-49 (49)
152 KOG0699|consensus 29.2 71 0.0015 39.6 4.8 26 1099-1124 477-503 (542)
153 KOG2023|consensus 29.0 29 0.00063 45.7 1.7 75 653-729 176-256 (885)
154 PF02724 CDC45: CDC45-like pro 27.6 37 0.0008 44.9 2.3 21 1452-1472 579-599 (622)
155 smart00343 ZnF_C2HC zinc finge 27.1 29 0.00064 27.1 0.8 18 376-395 1-18 (26)
156 PF06213 CobT: Cobalamin biosy 24.7 9.5E+02 0.021 28.9 13.0 29 564-595 70-100 (282)
157 PF05191 ADK_lid: Adenylate ki 23.1 29 0.00064 29.8 0.2 16 375-390 2-17 (36)
158 PHA02608 67 prohead core prote 22.9 2.2E+02 0.0047 28.8 5.9 18 711-728 15-32 (80)
159 PF03115 Astro_capsid: Astrovi 22.8 28 0.00061 46.9 0.0 16 152-167 85-100 (787)
160 PF05918 API5: Apoptosis inhib 22.7 1.5E+02 0.0032 39.1 6.2 129 1220-1356 20-170 (556)
161 KOG0127|consensus 22.4 1.1E+02 0.0024 39.8 4.9 23 868-890 301-323 (678)
162 PF05764 YL1: YL1 nuclear prot 21.7 51 0.0011 38.6 1.8 8 851-858 57-64 (240)
163 PRK05978 hypothetical protein; 20.7 54 0.0012 36.2 1.6 28 370-398 29-61 (148)
164 KOG1991|consensus 20.5 44 0.00095 45.7 1.0 18 682-699 696-713 (1010)
165 PF13696 zf-CCHC_2: Zinc knuck 20.2 55 0.0012 27.8 1.2 23 370-394 4-26 (32)
No 1
>KOG2574|consensus
Probab=100.00 E-value=4.4e-137 Score=1170.33 Aligned_cols=444 Identities=57% Similarity=0.921 Sum_probs=435.3
Q ss_pred cccccHHHHHhccCchhHHHHHHHHHHHHhccCCCCCccCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhhccC
Q psy11166 1178 FQAKSIHQIAKLRNSEQLQNVMTSIEKYQKSNQSQAPIVGPVESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRF 1257 (1746)
Q Consensus 1178 ~~~~~v~~iakL~~s~~~~~vm~~I~~~~~~~~~~~~~~g~~e~~pEy~lIVqan~L~~eID~EI~~ih~~lRe~Ys~rF 1257 (1746)
..++||+.|+||++|.+|.++|+++++|++.+.....+.|++|++|||+|||.||+++++||+||+++|+||||||+.||
T Consensus 47 l~~dsv~~v~kL~~S~r~~~im~q~E~~l~k~~d~~~i~~~~E~dpeykLIVd~n~iavdI~nEI~ivH~FikdkY~~RF 126 (492)
T KOG2574|consen 47 LTYDSVESVSKLAKSSRYRDIMQQTEEYLGKQVDAKEILGPVEADPEYKLIVDCNQIAVDIENEIVIVHNFIKDKYSKRF 126 (492)
T ss_pred hhhhhHHHHHHHHhccHHHHHHHHHHHHhcccchHHHhcCccccCcceeeeechhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 44899999999999999999999999999998877889999999999999999999999999999999999999999999
Q ss_pred ccchhccCChHHHHHHHHHHhCCcccCCCchHHHhhcchhhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 1258 PELDTLVVSPLEYLRTVRELGNDLDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKT 1337 (1746)
Q Consensus 1258 PELesLV~~p~~Y~r~V~~igN~ld~~k~~e~L~~iL~~~timvVsv~AstS~G~~Lseedl~~I~~ac~~i~~L~~~r~ 1337 (1746)
|||++||++|++|++||+.|||++|..++++.++.+||++|||||+|||+||+|..|+++++.+|++||+++++|+.+|.
T Consensus 127 pELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~~~~~L~~atIMVvsvTasTT~G~~Lp~d~~~~v~eAc~~a~~L~~~k~ 206 (492)
T KOG2574|consen 127 PELESLVPNPLDYAKVVKELGNELDLKKVDLELQAILPSATIMVVSVTASTTQGNKLPEDELEQVLEACEMAEQLNKLKE 206 (492)
T ss_pred hhhHhhccCHHHHHHHHHHHhhhHHHHHhhhhhhccCccceEEEEEEEeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCchhHHhchHHHHHHHHHhCCCccccCCCCcCCccccccCCCchhhhhhcccccccccccccCCCC
Q psy11166 1338 SIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQKKLLSGFSQTSVLP 1417 (1746)
Q Consensus 1338 ~i~~YVesRM~~IAPNLsALVG~~vAArLI~~AGGL~~~~~~~~~~~~~~~LAkmPAcNIq~LGAeK~l~~glst~~~~p 1417 (1746)
.|.+||+|||++||||||+|||+.+||+||++|||| ++||+|||||||+||++|+++.||++.+..|
T Consensus 207 ki~eyVeSrms~IAPNLs~ivGs~taA~Lig~AGGl-------------s~Lsk~PaCNv~vlGk~kk~l~gfst~~~~~ 273 (492)
T KOG2574|consen 207 KIYEYVESRMSFIAPNLSAIVGSTTAAKLIGIAGGL-------------SELSKMPACNVQVLGKQKKTLIGFSTTSSLP 273 (492)
T ss_pred HHHHHHHHHhhhccchhHhhhcHHHHHHHHHhhcCc-------------hhhccCCcchhhhhhccchhccccccccccC
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEEecccccccCchhhHHHhhhhhcCCchhhHhHHHHHhhhhHHhhhhhcccCCCCCCcccHHHHHHHHHHHHHhcCC
Q psy11166 1418 HTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEP 1497 (1746)
Q Consensus 1418 k~G~Iy~s~lVq~~P~~~~~~~~~~~~~~~~~~r~KaaR~lAaK~aLAARvD~~~~~~dg~~G~~lreeIe~kl~Kl~Ep 1497 (1746)
|+||||+|++||++|| ++|+||+|||||||+||||||++|++++|.+|.+||++|++||+||+||
T Consensus 274 ~~Gyly~s~ivQk~Pp---------------dl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~evekK~eKl~Ep 338 (492)
T KOG2574|consen 274 HTGYLYASDIVQKTPP---------------DLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEVEKKIEKLQEP 338 (492)
T ss_pred ccceeeHHhHhhhcCc---------------cHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcCcCCCCCchhhhhhHHHhhhcHHHHHhhhccccccchhhhccccccccccCCCCCCcccccccccc
Q psy11166 1498 PPVKFVKPLPKPIEAGRKKRGGKRVRKMKERYAMTELRKQQNRLSFADIEDDAYQEDLGYSRGTIGKTGAGRIRTPQVDE 1577 (1746)
Q Consensus 1498 P~~k~~K~LP~P~d~~kkkRGGrR~RK~Ke~~~~telrk~~NRm~FG~~Eed~~~e~~G~~~Gmlg~~g~Grir~~~v~~ 1577 (1746)
||++.+||||+|+|+|||||||||+|||||||+||||||+||||+||++|+|+|++++|+|+||+|++|+||||..+||+
T Consensus 339 Ppvk~~KaLP~P~d~pkKkRgGRR~RKmKEr~~lTe~RklaNRM~FG~~Ee~v~~~~~g~glGmlgksg~Grir~~~vd~ 418 (492)
T KOG2574|consen 339 PPVKQTKALPIPLDGPKKKRGGRRFRKMKERYALTELRKLANRMAFGKIEEDVLQEDLGEGLGMLGKSGSGRIRGSSVDE 418 (492)
T ss_pred CCCCcCCCCCCCCccchhhccchHHHHHHHHhhhHHHHHHHhhhccCChhhhhhccccccccccccccCCCceeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHHHHHhhhhccCCcccccccccccccccccCCCceeEEeCCchhhcccCccCCccccCCCCceeeccc
Q psy11166 1578 KTKVRISKTLQKNLQRQQVWGGSTTVKKQVSGTTSSIAFTPLQGLEIVNPQAAEKSSGETGAKYFSNTAGFVRVNQT 1654 (1746)
Q Consensus 1578 ktk~~~sk~~~~~l~~~~~~g~~~~~~~~~sGtaSSlaFTP~qGlElvnP~~~~~~~~~~~~kyFs~~~~F~~v~~~ 1654 (1746)
+||+||||+|+++|++|+++||.+ ++||+||++|||+||||||||++++....+++++|||++|+|++|++.
T Consensus 419 ~tkarisk~~~~~lq~~q~agg~t-----tsG~~ss~aftP~qglEivnp~~~~~~~~e~~~~yFS~~g~F~~i~~~ 490 (492)
T KOG2574|consen 419 KTKARISKKMKKQLQEQQQAGGFT-----TSGTASSVAFTPIQGLEIVNPQAAEQQQPEENSKYFSSSGSFSKIKKD 490 (492)
T ss_pred chhhhhhHHHHHHHHHHHhhCCcc-----ccccccccccCcccchhhcCHHHHhhcCcccccceecCCCceeecccc
Confidence 999999999999999999999965 579999999999999999999999988888999999999999999875
No 2
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-68 Score=613.96 Aligned_cols=287 Identities=38% Similarity=0.561 Sum_probs=271.2
Q ss_pred CCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCccchhccCChHHHHHHHHHHhCCcccCCCc-hHHHhhcch
Q psy11166 1218 PVESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGNDLDQTKNN-ETLQQVLTQ 1296 (1746)
Q Consensus 1218 ~~e~~pEy~lIVqan~L~~eID~EI~~ih~~lRe~Ys~rFPELesLV~~p~~Y~r~V~~igN~ld~~k~~-e~L~~iL~~ 1296 (1746)
..+.+.+|++|||||+++++||++||.+|+||||||+||||||.+||.++.+|+++|..+||+.+.++.. ..|..+++.
T Consensus 108 ~~~~~~~D~~iiqai~~lddiDk~iN~~~~RlrEWY~~hFPEL~~lv~~~~~Y~~~V~~~g~~~~~~~~~~~~l~~~~~~ 187 (395)
T COG1498 108 REEVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSSLVPDNEQYAKLVSALGNRENINKESLKDLGFALPD 187 (395)
T ss_pred HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhcccHHHHHHHHHHHcchhccchhhHHHHhhhcch
Confidence 3477889999999999999999999999999999999999999999999999999999999997765543 235555666
Q ss_pred hhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHhchHHHHHHHHHhCCCccc
Q psy11166 1297 ATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRL 1376 (1746)
Q Consensus 1297 ~timvVsv~AstS~G~~Lseedl~~I~~ac~~i~~L~~~r~~i~~YVesRM~~IAPNLsALVG~~vAArLI~~AGGL~~~ 1376 (1746)
.++.|..+|.+|||.++++.|+.+|..+|+.+.+|.++|++|.+||+++|+.||||||+|||+.||||||++||||
T Consensus 188 -~~~~i~~aA~~SmG~~~~~~Di~~i~~~ae~i~~L~~~R~~l~~Yi~~~M~~vAPNlt~LVG~~lgARLIs~AGgL--- 263 (395)
T COG1498 188 -IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQLEEYIESKMSEIAPNLTALVGPVLGARLISHAGGL--- 263 (395)
T ss_pred -HHHHHHHHhhcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHhHHHHHHHHHHhcCH---
Confidence 6778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCccccccCCCchhhhhhcccccccccccccCCCCceEEEecccccccCchhhHHHhhhhhcCCchhhHhHHHH
Q psy11166 1377 SKMPGVAGGLSRLSKMPACNILLQGAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAAR 1456 (1746)
Q Consensus 1377 ~~~~~~~~~~~~LAkmPAcNIq~LGAeK~l~~glst~~~~pk~G~Iy~s~lVq~~P~~~~~~~~~~~~~~~~~~r~KaaR 1456 (1746)
.+||||||||||+|||+|+||+||++++++||||+||+|++|+++|+ |.|||+||
T Consensus 264 ----------~~LAk~PASTIQvLGAEKALFraL~~~~~~PK~GvIy~~p~I~~sp~---------------~~rGkiAR 318 (395)
T COG1498 264 ----------TRLAKMPASTIQVLGAEKALFRALKTGAKTPKYGVIYQSPLIQKSPP---------------WQRGKIAR 318 (395)
T ss_pred ----------HHHHhCccchhhhhhhhHHHHHHHhCCCCCCCceeEeeChhhccCCH---------------HHhhHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999
Q ss_pred HhhhhHHhhhhhcccCCCCCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcCcCCCCCchhhhhhHHHhhhcHHHH
Q psy11166 1457 LVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKPIEAGRKKRGGKRVRKMKERYAMTELRK 1536 (1746)
Q Consensus 1457 ~lAaK~aLAARvD~~~~~~dg~~G~~lreeIe~kl~Kl~EpP~~k~~K~LP~P~d~~kkkRGGrR~RK~Ke~~~~telrk 1536 (1746)
+||||||||||||+|++.+++ ..||++|++||+++.++|+.+++|.+|.| + +++|+||+.|++|+++.-++.|+
T Consensus 319 ~LAaK~AIAARiD~~s~~~~~---~~lr~ele~Ri~~i~~~~~~pp~k~~~~~-~--~~~~~~r~~~~~~~~~~~~~~~~ 392 (395)
T COG1498 319 ALAAKLAIAARIDAFSGEPDG---ISLREELEKRIEKLKEKPPKPPTKAKPER-D--KKERPGRYRRKKKEKKAKSERRG 392 (395)
T ss_pred HHHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHHHhccCCCCCCcccccc-c--cccCccccccccccccchhhhhh
Confidence 999999999999999999887 99999999999999999999999999999 4 88999999999999999999988
Q ss_pred Hhh
Q psy11166 1537 QQN 1539 (1746)
Q Consensus 1537 ~~N 1539 (1746)
.+|
T Consensus 393 ~~~ 395 (395)
T COG1498 393 LQN 395 (395)
T ss_pred ccC
Confidence 775
No 3
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=100.00 E-value=1.2e-65 Score=605.97 Aligned_cols=343 Identities=27% Similarity=0.372 Sum_probs=289.8
Q ss_pred cccccccccc-----chhcccCccccCCCcccccceeeccCCccchhh--hhhhcccccccHHHHHhccCchhHHHHHHH
Q psy11166 1129 TNNVQILSGG-----FHSLCGSSRSIEPNTRQSRNVWHGSGNLKTLTS--TLFYFVFQAKSIHQIAKLRNSEQLQNVMTS 1201 (1746)
Q Consensus 1129 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~g~~k~~~~--~l~~~~~~~~~v~~iakL~~s~~~~~vm~~ 1201 (1746)
++|.+-+++| ++.+++. + | .+.+.-++|.|.+-..+ ++|++|. ...+.++.+..+ .++.+++..
T Consensus 34 ~~~~~~~~~g~~~~~l~~~l~~-~---~---~~~~~~l~v~d~~l~~~l~~~~~~~~-~~~~~~~~r~iR-~~~~~~~~~ 104 (414)
T PRK14552 34 VEELLNNEKGEPTNALFELLEE-L---K---ELGPDEVVVENEEESRKLQELGYRVT-VEPPNKIGEFLR-ENLPELGVE 104 (414)
T ss_pred HHHHHHHHcCCCCHHHHHHHHh-c---h---hcCCceEEEecHHHHHHHHHcCCeeE-eccHHHHHHHHH-hHHHHHHHH
Confidence 6666666666 4777765 3 3 24567799999985444 4899998 456677777664 444455443
Q ss_pred H------HHHHhccCC----CCCccCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCccchhccCChHHHH
Q psy11166 1202 I------EKYQKSNQS----QAPIVGPVESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYL 1271 (1746)
Q Consensus 1202 I------~~~~~~~~~----~~~~~g~~e~~pEy~lIVqan~L~~eID~EI~~ih~~lRe~Ys~rFPELesLV~~p~~Y~ 1271 (1746)
+ .+|...... .+...-....+-.+++|||||+++++||+|||.+|||||+||+||||||++||+|+.+|+
T Consensus 105 ~gl~~~~~~~~~~~~~~~~~~sr~klk~~~~~~D~~iiqai~~ld~ldk~in~~~~RLrewY~~~FPEL~~iv~d~~~Y~ 184 (414)
T PRK14552 105 YGFFEDEEEFYEKLHEWSVELTRRKLRSAAQKRDKLAIQAIRAIDDIDKTINLFSERLREWYSLHFPELDELVKKHEEYV 184 (414)
T ss_pred hcccCCHHHHHHHHHHHhHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCHHhhcCChHHHH
Confidence 2 011100000 000000124456789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcccCCCchHHHhh-cchhhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy11166 1272 RTVRELGNDLDQTKNNETLQQV-LTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSIFEYVESRMTYI 1350 (1746)
Q Consensus 1272 r~V~~igN~ld~~k~~e~L~~i-L~~~timvVsv~AstS~G~~Lseedl~~I~~ac~~i~~L~~~r~~i~~YVesRM~~I 1350 (1746)
++|+.++++.+... +.|.++ |+.++++.|+++|++|+|.++++.|+..|..+|+++++|+++|++|.+||+++|..|
T Consensus 185 ~iV~~i~~~~~i~~--~~l~~i~l~~eka~~I~~aA~~S~G~~lse~dl~~I~~~a~~I~~L~e~R~~L~~yI~~~M~~i 262 (414)
T PRK14552 185 KLVSELGDRENYTR--EKLKKLGLPENKARKIAEAAKKSMGADLSEFDLEAIKKLANEILDLYKLREELEDYLETVMKEV 262 (414)
T ss_pred HHHHHcCChhhhhh--hHHHhccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999977654 348888 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHhchHHHHHHHHHhCCCccccCCCCcCCccccccCCCchhhhhhcccccccccccccCCCCceEEEeccccccc
Q psy11166 1351 APNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQKKLLSGFSQTSVLPHTGFVYYSSLVQD 1430 (1746)
Q Consensus 1351 APNLsALVG~~vAArLI~~AGGL~~~~~~~~~~~~~~~LAkmPAcNIq~LGAeK~l~~glst~~~~pk~G~Iy~s~lVq~ 1430 (1746)
|||||+|||+.+|||||++|||| .+||+|||||||+|||+|++|+||++++.+|||||||||++||+
T Consensus 263 APNLtaLVG~~lAArLIa~AGsL-------------~~Lak~PastIqiLGAeKalf~~l~t~~~~pk~G~Iy~~~~V~~ 329 (414)
T PRK14552 263 APNLTALVGPSLGARLISLAGGL-------------EELAKMPASTIQVLGAEKALFRHLRTGAKPPKHGVIFQYPAIHG 329 (414)
T ss_pred ccHHHHHHhhHHHHHHHHHhCCH-------------HHHhhCCchHHHHhchhhHHHHHhccCCCCCCceEEEcCHHHhh
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CchhhHHHhhhhhcCCchhhHhHHHHHhhhhHHhhhhhcccCCCCCCcccHHHHHHHHHHHH----HhcCCCCCCCCCCC
Q psy11166 1431 YPADMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLD----KLTEPPPVKFVKPL 1506 (1746)
Q Consensus 1431 ~P~~~~~~~~~~~~~~~~~~r~KaaR~lAaK~aLAARvD~~~~~~dg~~G~~lreeIe~kl~----Kl~EpP~~k~~K~L 1506 (1746)
+|+ ++||||+|+||||||||||||+|++ +.+|.+||++|++||+ ||+||||.+..++-
T Consensus 330 ~p~---------------~~rgkiaR~lA~K~alAARiD~~~~---~~~G~~l~~~l~~ri~~i~~k~~~Pp~~k~~~~~ 391 (414)
T PRK14552 330 SPW---------------WQRGKIARALAAKLAIAARVDYFSG---RYIGDELKEELNKRIEEIKEKYPKPPKKKREEKK 391 (414)
T ss_pred CCH---------------HHHHHHHHHHHHHHHHHHHhhhcCC---ccchHHHHHHHHHHHHHHHHhcCCCCCCCcCCCC
Confidence 999 9999999999999999999999975 4799999999999999 67999999998875
Q ss_pred CCCCcCc
Q psy11166 1507 PKPIEAG 1513 (1746)
Q Consensus 1507 P~P~d~~ 1513 (1746)
|.+...+
T Consensus 392 ~~~~~~~ 398 (414)
T PRK14552 392 PQKRKKK 398 (414)
T ss_pred CCCcccc
Confidence 5554433
No 4
>KOG2573|consensus
Probab=100.00 E-value=8.6e-64 Score=567.36 Aligned_cols=336 Identities=22% Similarity=0.373 Sum_probs=291.5
Q ss_pred cccccccccccc-h----hcccCccccCCCcccccceeeccCCccchhhh---hh-hcccccccHHHHHhccCchhHHHH
Q psy11166 1128 KTNNVQILSGGF-H----SLCGSSRSIEPNTRQSRNVWHGSGNLKTLTST---LF-YFVFQAKSIHQIAKLRNSEQLQNV 1198 (1746)
Q Consensus 1128 ~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~g~g~~k~~~~~---l~-~~~~~~~~v~~iakL~~s~~~~~v 1198 (1746)
++||+|-+|+|. | ++++-.+ |.. .++++.||+||.|..+++ .+ +.|+...-|.+|.+-.+ ..|..+
T Consensus 59 ALen~n~iSeG~~~edLr~fLe~nl---pK~-kkkk~sLgi~d~kLg~~i~E~~~~i~c~~~~~~~ellRGvR-~hf~kl 133 (498)
T KOG2573|consen 59 ALENANAISEGVVHEDLRSFLELNL---PKV-KKKKVSLGIGDSKLGISIKEAFPKIPCQSNEVVQELLRGVR-KHFDKL 133 (498)
T ss_pred HHHhccccccccccHHHHHHHHhhC---hhh-hcCceeeccCcchhhhHHHhhccCcccccchhHHHHHHHHH-HHHHHH
Confidence 589999999998 3 4556555 644 889999999999966663 54 89999999888877664 667777
Q ss_pred HHHHHHHHhcc------CCCCCccCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCccchhccCChHHHHH
Q psy11166 1199 MTSIEKYQKSN------QSQAPIVGPVESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLR 1272 (1746)
Q Consensus 1199 m~~I~~~~~~~------~~~~~~~g~~e~~pEy~lIVqan~L~~eID~EI~~ih~~lRe~Ys~rFPELesLV~~p~~Y~r 1272 (1746)
|..+..+-... -+-+...-....+..++||||++.|++++|++||++.|||||||+||||||..||+|+..|++
T Consensus 134 ~K~L~~~d~~kaqLGLghsYSRaKVkfnV~R~DnmvIqaI~lLDqlDKDINtfaMRirEwYswhFPEL~kiv~DNy~ya~ 213 (498)
T KOG2573|consen 134 MKGLDPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIALLDQLDKDINTFAMRIREWYSWHFPELVKIVPDNYKYAK 213 (498)
T ss_pred HccCCCccHHHHHhcccchhhhhheeecccccchHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccHHHHHhccchHHHHH
Confidence 76654432111 011111112455788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcccCCC--chHHHhhcc--hhhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy11166 1273 TVRELGNDLDQTKN--NETLQQVLT--QATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSIFEYVESRMT 1348 (1746)
Q Consensus 1273 ~V~~igN~ld~~k~--~e~L~~iL~--~~timvVsv~AstS~G~~Lseedl~~I~~ac~~i~~L~~~r~~i~~YVesRM~ 1348 (1746)
+|+.|+|+...+.. .+ +-..|. .+..-.|..++.+|||++||+.||.+|..+++++.+|.++|++|.+||..+|+
T Consensus 214 ~~~~i~dk~~l~ed~~~~-~~e~l~~d~~ka~~Iiea~k~SMG~diS~~Dl~Ni~~fa~rV~~l~eyRk~L~~YL~~KMs 292 (498)
T KOG2573|consen 214 VVKFIVDKEKLNEDGLHE-LLEDLGVDSEKAQEIIEAAKNSMGQDISPADLENIRKFAERVSDLAEYRKQLSDYLKDKMS 292 (498)
T ss_pred HHHHHhchhhccccchhH-HHHHhcCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998443322 22 344444 45566788889999999999999999999999999999999999999999999
Q ss_pred ccCCchhHHhchHHHHHHHHHhCCCccccCCCCcCCccccccCCCchhhhhhcccccccccccccCCCCceEEEeccccc
Q psy11166 1349 YIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQKKLLSGFSQTSVLPHTGFVYYSSLV 1428 (1746)
Q Consensus 1349 ~IAPNLsALVG~~vAArLI~~AGGL~~~~~~~~~~~~~~~LAkmPAcNIq~LGAeK~l~~glst~~~~pk~G~Iy~s~lV 1428 (1746)
.|||||++|+|..||||||+||||| +||||.||||+|+|||||++|++|+++++||+||+||||++|
T Consensus 293 ~vAPnLa~LIGe~vgARLIShAGsL-------------tNLaK~PASTvQIlGAEKALFRALKtrgnTPKYGLIyhSsfi 359 (498)
T KOG2573|consen 293 SVAPNLAALIGEVVGARLISHAGSL-------------TNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIYHSSFI 359 (498)
T ss_pred hhcchHHHHHHHHHHHHHHHhcccc-------------chhhhCcchHHHHhhhHHHHHHHHHhcCCCCCceeEeecchh
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred ccCchhhHHHhhhhhcCCchhhHhHHHHHhhhhHHhhhhhcccCCCCCCcccHHHHHHHHHHHHHhcCC
Q psy11166 1429 QDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEP 1497 (1746)
Q Consensus 1429 q~~P~~~~~~~~~~~~~~~~~~r~KaaR~lAaK~aLAARvD~~~~~~dg~~G~~lreeIe~kl~Kl~Ep 1497 (1746)
..+.. ..+|+++|+||+||+||+|||||++.|+..||..||++|++||+.+...
T Consensus 360 grA~a---------------kNKGRISRyLAnKCSIAsrIDcFse~pts~fGe~Lr~qVEeRL~fy~tg 413 (498)
T KOG2573|consen 360 GRAGA---------------KNKGRISRYLANKCSIASRIDCFSEDPTSVFGEKLREQVEERLEFYETG 413 (498)
T ss_pred hhhhc---------------cccchHHHHHHhhccHHHhhhhcccCCchHHHHHHHHHHHHHHHhhhcC
Confidence 99999 9999999999999999999999999999999999999999999999854
No 5
>KOG2574|consensus
Probab=100.00 E-value=1.8e-61 Score=552.23 Aligned_cols=222 Identities=48% Similarity=0.739 Sum_probs=209.0
Q ss_pred cchhhhccCCCCCCCCC------CccchhhcchhHHHHHHH-hhccceeehhccccCCCCCCcccHHHHHHHHHHHhhhc
Q psy11166 20 GGEEMAADGMETEPDDV------KPDVHKIIEQDIKGVRCR-LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLT 92 (1746)
Q Consensus 20 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~a~~-vaaK~~LAARvD~~~~~~~G~~G~~~reei~~ki~K~~ 92 (1746)
|-.++-..|+++.+-.. .-++.|-.|+|||++|.| |||||+||||||++|++++|..|..||++|++||+|||
T Consensus 257 Gk~kk~l~gfst~~~~~~~Gyly~s~ivQk~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~evekK~eKl~ 336 (492)
T KOG2574|consen 257 GKQKKTLIGFSTTSSLPHTGYLYASDIVQKTPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEVEKKIEKLQ 336 (492)
T ss_pred hccchhccccccccccCccceeeHHhHhhhcCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHHHHHHHhhc
Confidence 55677788998877633 247788999999999988 89999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccCccchHHHhhHHHhhhhHHHHHhhccccccchhhhhccccccccccCCCCCCcccccccc
Q psy11166 93 EPPPVKFVKPLPKPIEAGRKKRGGKRVRKMKERYAMTELRKQQNRLSFADIEDDAYQEDLGYSRGTIGKTGAGRIRTPQV 172 (1746)
Q Consensus 93 EPPp~k~~KaLP~P~d~~kkkRGGrR~RK~KE~~~~TelRK~~NRm~FG~~Eed~~~e~~G~g~GmlG~~gsGriR~~~v 172 (1746)
||||+|.+||||+|+|+|||||||||+|||||||++|||||+||||+||++|||+|++++|+|+||+|++|+||||..+|
T Consensus 337 EpPpvk~~KaLP~P~d~pkKkRgGRR~RKmKEr~~lTe~RklaNRM~FG~~Ee~v~~~~~g~glGmlgksg~Grir~~~v 416 (492)
T KOG2574|consen 337 EPPPVKQTKALPIPLDGPKKKRGGRRFRKMKERYALTELRKLANRMAFGKIEEDVLQEDLGEGLGMLGKSGSGRIRGSSV 416 (492)
T ss_pred CCCCCCcCCCCCCCCccchhhccchHHHHHHHHhhhHHHHHHHhhhccCChhhhhhccccccccccccccCCCceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhHHHHHHHhhhhcccCccccccccccccceeeeccccc-cccccCCCCcccCCCCCCccccccccccc
Q psy11166 173 DEKTKVRISKTLQKNLQRQQVWGGSTTVKKQVSGTTSSIAFTPLQL-TLRRQKSRPEKLGPNTSPTPLDLYGLISE 247 (1746)
Q Consensus 173 d~ktkarisK~l~k~l~~~~~~gg~~~~~~~tsG~aSSlaFTPvQG-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1746)
|++||+||||+++++|++++.+||.+ ||||+||+||||+|| |+-||++ .+..+|.+..+||+.-|.|+.
T Consensus 417 d~~tkarisk~~~~~lq~~q~agg~t-----tsG~~ss~aftP~qglEivnp~~-~~~~~~e~~~~yFS~~g~F~~ 486 (492)
T KOG2574|consen 417 DEKTKARISKKMKKQLQEQQQAGGFT-----TSGTASSVAFTPIQGLEIVNPQA-AEQQQPEENSKYFSSSGSFSK 486 (492)
T ss_pred ccchhhhhhHHHHHHHHHHHhhCCcc-----ccccccccccCcccchhhcCHHH-HhhcCcccccceecCCCceee
Confidence 99999999999999999999999986 679999999999999 9999988 577899999999999999874
No 6
>KOG2572|consensus
Probab=100.00 E-value=2.3e-59 Score=531.41 Aligned_cols=329 Identities=25% Similarity=0.403 Sum_probs=281.1
Q ss_pred ccccccccccc-----chhcccCccccCCCcccccceeeccCCcc---chhhhhhhcccccccHHHHHhccCchhHHHHH
Q psy11166 1128 KTNNVQILSGG-----FHSLCGSSRSIEPNTRQSRNVWHGSGNLK---TLTSTLFYFVFQAKSIHQIAKLRNSEQLQNVM 1199 (1746)
Q Consensus 1128 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~g~~k---~~~~~l~~~~~~~~~v~~iakL~~s~~~~~vm 1199 (1746)
++++|.-+-+| .|.++...- ++--|-|+|.| .|..-|-.+|+....|.++-+-.+ .++.+++
T Consensus 56 alea~~~l~eGkvs~~L~k~lk~~~---------~~etLaVaD~KLgn~i~ekL~~~~v~~~~v~el~RgiR-s~l~el~ 125 (498)
T KOG2572|consen 56 ALEAVTALAEGKVSSGLEKFLKLNK---------KKETLAVADAKLGNAIKEKLSINCVHDSAVMELLRGIR-SQLTELI 125 (498)
T ss_pred HHHHHHHHHcCCcchhHHHHHHhhc---------cCCeeeeccHHHhHHHHHhhcceeecchhHHHHHHHHH-HHHHHHh
Confidence 45667666554 466665442 23347899999 334458999999888777655543 2333333
Q ss_pred HHHHHHHhccCCCCCccCC----------CCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCccchhccCChHH
Q psy11166 1200 TSIEKYQKSNQSQAPIVGP----------VESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLE 1269 (1746)
Q Consensus 1200 ~~I~~~~~~~~~~~~~~g~----------~e~~pEy~lIVqan~L~~eID~EI~~ih~~lRe~Ys~rFPELesLV~~p~~ 1269 (1746)
..+..-- -.....|. +..+--++|||||++|+|++|+|+|++.|+|||||+||||||.++|.|++.
T Consensus 126 ~g~~~~d----l~~msLglaHslar~Klkfs~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEwYGwHFPEL~kii~dn~~ 201 (498)
T KOG2572|consen 126 SGLNDSD----LAAMSLGLAHSLARYKLKFSPDKVDTMIIQAISLLDDLDKELNTYAMRVKEWYGWHFPELAKIIQDNYA 201 (498)
T ss_pred ccCChhh----hhHHHHHHHHHHHhhhcccCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHH
Confidence 3221000 00011122 333445689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcccCCCchHHHhhcchhhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy11166 1270 YLRTVRELGNDLDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSIFEYVESRMTY 1349 (1746)
Q Consensus 1270 Y~r~V~~igN~ld~~k~~e~L~~iL~~~timvVsv~AstS~G~~Lseedl~~I~~ac~~i~~L~~~r~~i~~YVesRM~~ 1349 (1746)
|+++|+.+|++.+....+ |.++|+.+.--.+..+|-+|||..+++.|+.+|..+|++++++.++|.++++||.+||..
T Consensus 202 Yak~vk~mG~r~~~a~~d--~sEil~eeiE~~~k~aAeiSMgteis~~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~ 279 (498)
T KOG2572|consen 202 YAKLVKAMGVRCNAASLD--FSEILPEEIEAELKEAAEISMGTEISDSDLLNIKELCDQVLELAEYRDQLIDYLKNRMRT 279 (498)
T ss_pred HHHHHHHHhHhhhhhccc--HHhhchHHHHHHHHhhhhhhhcccccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999997765443 999999998888999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHhchHHHHHHHHHhCCCccccCCCCcCCccccccCCCchhhhhhcccccccccccccCCCCceEEEecccccc
Q psy11166 1350 IAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQKKLLSGFSQTSVLPHTGFVYYSSLVQ 1429 (1746)
Q Consensus 1350 IAPNLsALVG~~vAArLI~~AGGL~~~~~~~~~~~~~~~LAkmPAcNIq~LGAeK~l~~glst~~~~pk~G~Iy~s~lVq 1429 (1746)
||||||+|||.+|+||||+|||+| .+|||+|+|+||+|||+|++|++++++..||+||+|||++||.
T Consensus 280 iAPnLTaLvGElVGaRlIshaGSL-------------~nLaK~p~StIQilGAEKALFrALKtk~~TPKYGLIyhasLVg 346 (498)
T KOG2572|consen 280 IAPNLTALVGELVGARLISHAGSL-------------FNLAKAPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVG 346 (498)
T ss_pred hcchHHHHHHHHHHHHHHHhhhhH-------------HHHhhCChhHHHHHhhHHHHHHHHhcccCCCCCcceeccchhc
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cCchhhHHHhhhhhcCCchhhHhHHHHHhhhhHHhhhhhcccCCCCCCcccHHHHHHHHHHHHHhcCCCCC
Q psy11166 1430 DYPADMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPV 1500 (1746)
Q Consensus 1430 ~~P~~~~~~~~~~~~~~~~~~r~KaaR~lAaK~aLAARvD~~~~~~dg~~G~~lreeIe~kl~Kl~EpP~~ 1500 (1746)
++|| +++||+||.||||++||+|+|++++..+|.+|...|..++.+|+.+.+--..
T Consensus 347 Qa~p---------------KnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~klE~rlr~lE~r~l~ 402 (498)
T KOG2572|consen 347 QASP---------------KNKGKIARSLAAKTALAARIDALGEESTNEIGVENRAKLEKRLRSLEGRDLQ 402 (498)
T ss_pred cCCc---------------ccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhhhccCcc
Confidence 9999 9999999999999999999999999999999999999999999999875443
No 7
>KOG0008|consensus
Probab=100.00 E-value=5.1e-46 Score=463.03 Aligned_cols=362 Identities=49% Similarity=0.754 Sum_probs=333.3
Q ss_pred CcCCCCCcccccccccccccccCCCCCCCCCcCCCCCCCCccchhHHHHhhccccccchhhhcccCCcceecchhhhhhh
Q psy11166 365 RKYKSKPDLKVKCGACGLVGHMRTNKACPQYSLTGQMPMNVAMTEEQEEEYGKVIDCDEEALVNVEGTKVTLSGKLIKHA 444 (1746)
Q Consensus 365 ~~~~~~~~~~~~c~~cg~~ghm~tnk~CP~Y~~~i~~PmdlamtEeQ~EE~ekql~~d~d~lvnveGtkvklssk~le~a 444 (1746)
+|+|.+|++|++||||||+| ..+-..|..+++++.+.++.++.+...+.++++|+|+++++++......
T Consensus 1144 ~k~k~~~~~k~~CgACgq~g-----------~~ss~~~s~~~l~~i~~e~aek~~~~~~~~l~k~~g~~s~~~s~~~~~~ 1212 (1563)
T KOG0008|consen 1144 KKMKKRPDLKLKCGACGQIG-----------KQSSSSPSNPALTEIQNEKAEKSVTKNDVDLIKVGGTKSKLSSQIAESI 1212 (1563)
T ss_pred cccCCCccccceeccccccc-----------ccCCCCCCCccccchhhhhchhhhhhhhhhheecCCcccccchhhhhcc
Confidence 77888999999999999999 2222456666899998888777655555559999999999999888888
Q ss_pred HHHHHhhhccCCChhhhhcccccCCCCCCCchhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhccccCCCccccccC
Q psy11166 445 EEVKRKSLLLKVPKEALHAKKKRKANNPDNQLDYLKRHQKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFP 524 (1746)
Q Consensus 445 eE~rRrSl~lk~PKe~i~~KKRRr~~~pdeeld~l~r~~k~~kRRradp~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~P 524 (1746)
++.+|++ +++.|..+...+|+| . ....+++|+.++.+...|++++|.+.++.++..|.+++++. +...||.+|
T Consensus 1213 D~~~r~s-~Lk~p~~a~~~sKrr-s-~~~~h~dyl~~~~k~~~r~r~dP~V~~ss~l~~i~n~~~~~----~~t~~f~~P 1285 (1563)
T KOG0008|consen 1213 DDGRRKS-KLKIPSKAKPKSKRR-S-GTTVHCDYLQRPRKRGHRRRTDPSVSLSSILETIINQARSS----PNTYPFPTP 1285 (1563)
T ss_pred cccceee-eeccCcccccccccc-c-CCCchhhhcccchhhhhhhcCCCeeecccchHHHHHHHhcC----CCCcCCCCc
Confidence 7777777 899998887744433 3 33678999999999999999999999999999999999987 778899999
Q ss_pred CCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHhhhhHHHH
Q psy11166 525 VNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELL 604 (1746)
Q Consensus 525 Vd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek~fee~lke~Ee~l 604 (1746)
|+.+.++|||.||+.||||+++++.|....|.+.+.|+.|+.||+.|..+||++.+.+...++.|...+-+.|.++|..+
T Consensus 1286 v~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~~ekedk~ 1365 (1563)
T KOG0008|consen 1286 VNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKLKEKEDKL 1365 (1563)
T ss_pred cchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHHHhhchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCCCchhHhhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHH
Q psy11166 605 MRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEF 684 (1746)
Q Consensus 605 ~rLEkaInPlldDnDq~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF 684 (1746)
.++|++|||++++++++++ +++..+|.. ++..+.+|||+.||+++.+|+||.+|++||||.+|.+++..+.|.+.++|
T Consensus 1366 ~~lEk~Inplld~~d~v~~-~~~d~~vs~-~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~ 1443 (1563)
T KOG0008|consen 1366 WRLEKAINPLLDDDDQVAF-FILDNIVSQ-MKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEF 1443 (1563)
T ss_pred HHHHhhcCcccCccchhhH-hhhhhHHHH-HHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHH
Confidence 9999999999999999999 999999985 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q psy11166 685 LADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQAD 746 (1746)
Q Consensus 685 ~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fek~l~el~~~l~qlE~~I~~~~e~a~eead 746 (1746)
..||++|+.||..||++++.+...|+++-+++...+.++..++.+++++++.+.+.+.+.++
T Consensus 1444 l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~~e~~~~~~~le~~is~~~~~a~~~~e 1505 (1563)
T KOG0008|consen 1444 LDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLANLLEYIEHLLQLEENISTLFEAAVEKAE 1505 (1563)
T ss_pred hhhhHhhcccceeecCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999988887763
No 8
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=100.00 E-value=8.4e-46 Score=386.90 Aligned_cols=149 Identities=50% Similarity=0.852 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHhchHHHHHHHHHhCCCccccCCCCcCCccccccCCCchhhhhh
Q psy11166 1321 EVYQACDMAFELNQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQ 1400 (1746)
Q Consensus 1321 ~I~~ac~~i~~L~~~r~~i~~YVesRM~~IAPNLsALVG~~vAArLI~~AGGL~~~~~~~~~~~~~~~LAkmPAcNIq~L 1400 (1746)
+|.++|+++++|+++|+.|.+||++||..||||||+|||+.||||||++|||| .+||+|||||||+|
T Consensus 1 ~I~~~~~~~~~L~~~r~~l~~yi~~rm~~iAPNLsaLvG~~vaA~Li~~aGgL-------------~~Lak~Pasniq~l 67 (150)
T PF01798_consen 1 NILSACDEVISLSEYRKELLEYIESRMSEIAPNLSALVGSSVAARLISHAGGL-------------ENLAKMPASNIQVL 67 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSH-------------HHHHTS-HHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCchHHHHHCcHHHHHHHHHcccH-------------HHHHhCCHhhHHHH
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccccccccccccCCCCceEEEecccccccCchhhHHHhhhhhcCCchhhHhHHHHHhhhhHHhhhhhcccCCCCCCc-c
Q psy11166 1401 GAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGA-I 1479 (1746)
Q Consensus 1401 GAeK~l~~glst~~~~pk~G~Iy~s~lVq~~P~~~~~~~~~~~~~~~~~~r~KaaR~lAaK~aLAARvD~~~~~~dg~-~ 1479 (1746)
||+|++|+||++++.+||+||||||++||++|+ ++|+||+|+||+||+||||||+|+++++|. +
T Consensus 68 GaeK~~~~~l~~~~~~pk~G~i~~~~~V~~~p~---------------~~r~k~~R~lA~K~aLAARiD~~~~~~~~~~~ 132 (150)
T PF01798_consen 68 GAEKALFRGLKTKAKTPKYGYIYQSDLVQKAPP---------------KLRGKAARMLAAKCALAARIDAFSESPDGSAF 132 (150)
T ss_dssp TCHHHHHHHHCCT-SSTSSSGGGGSHHHHTS-H---------------HHHHHHHHHHHHHHHHHHHHHHHT-STTHHHH
T ss_pred HhHHHHhHHhcccCCCCCeeEEecCHHHHhCCH---------------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 999999999999999999999999999999999 999999999999999999999999999994 9
Q ss_pred cHHHHHHHHHHHHHhcCC
Q psy11166 1480 GRSFREDIEKKLDKLTEP 1497 (1746)
Q Consensus 1480 G~~lreeIe~kl~Kl~Ep 1497 (1746)
|.+||++|++||+||+|.
T Consensus 133 G~~~re~i~~ki~k~~e~ 150 (150)
T PF01798_consen 133 GKKLREEIEKKIEKLQEK 150 (150)
T ss_dssp HHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999983
No 9
>PF09785 Prp31_C: Prp31 C terminal domain; InterPro: IPR019175 This is the C-terminal domain of the pre-mRNA processing factor Prp31. Prp31 is required for U4/U6*U5 tri-snRNP formation []. In humans this protein has been linked to autosomal dominant retinitis pigmentosa [, ].
Probab=100.00 E-value=8.3e-43 Score=353.37 Aligned_cols=124 Identities=54% Similarity=0.847 Sum_probs=116.6
Q ss_pred CCCCCCCCCCCCcCcCCCCCchhhhhhHHHhhhcHHHHHhhhccccccchhhhccccccccccCCCCCCcccccccccch
Q psy11166 1499 PVKFVKPLPKPIEAGRKKRGGKRVRKMKERYAMTELRKQQNRLSFADIEDDAYQEDLGYSRGTIGKTGAGRIRTPQVDEK 1578 (1746)
Q Consensus 1499 ~~k~~K~LP~P~d~~kkkRGGrR~RK~Ke~~~~telrk~~NRm~FG~~Eed~~~e~~G~~~Gmlg~~g~Grir~~~v~~k 1578 (1746)
|++.+||||+|+|.|||||||||+|||||+|+||||||+||||.||++|||+|+++.|+||||||++++||||..+++++
T Consensus 1 P~k~~KaLP~Pdd~pkKKRGGrR~RK~KEr~~~TelRK~~NRm~FG~~eee~~~~~~g~glGmlg~~~~grir~~~~~~k 80 (124)
T PF09785_consen 1 PAKQKKALPIPDDKPKKKRGGRRFRKMKERFAMTELRKAQNRMEFGEEEEEVYDFGEGIGLGMLGQSGSGRIRATQVDQK 80 (124)
T ss_pred CCCcCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcccccceeeeeeccCCCCceeeeecccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccHHHHHHHhhhhccCCcccccccccccccccccCCCceeEEeCC
Q psy11166 1579 TKVRISKTLQKNLQRQQVWGGSTTVKKQVSGTTSSIAFTPLQGLEIVNP 1627 (1746)
Q Consensus 1579 tk~~~sk~~~~~l~~~~~~g~~~~~~~~~sGtaSSlaFTP~qGlElvnP 1627 (1746)
|+++|||+++++|+.+...++ ..++||+|||||||+||||||||
T Consensus 81 ~~ak~sK~~~~~l~~~~~~~~-----~~~sG~~sSlaftp~qgiElvnP 124 (124)
T PF09785_consen 81 TKAKISKKMQKRLQSSGATTG-----GSTSGLASSLAFTPVQGIELVNP 124 (124)
T ss_pred hhhhhhHHHHHHHHhhccccC-----CcccchhhhhhcCCCccccccCc
Confidence 999999999999987654443 23599999999999999999999
No 10
>PF09785 Prp31_C: Prp31 C terminal domain; InterPro: IPR019175 This is the C-terminal domain of the pre-mRNA processing factor Prp31. Prp31 is required for U4/U6*U5 tri-snRNP formation []. In humans this protein has been linked to autosomal dominant retinitis pigmentosa [, ].
Probab=100.00 E-value=1.6e-41 Score=344.14 Aligned_cols=118 Identities=53% Similarity=0.796 Sum_probs=110.6
Q ss_pred CCCCCCCCCCCCCCCccCccchHHHhhHHHhhhhHHHHHhhccccccchhhhhccccccccccCCCCCCccccccccccc
Q psy11166 96 PVKFVKPLPKPIEAGRKKRGGKRVRKMKERYAMTELRKQQNRLSFADIEDDAYQEDLGYSRGTIGKTGAGRIRTPQVDEK 175 (1746)
Q Consensus 96 p~k~~KaLP~P~d~~kkkRGGrR~RK~KE~~~~TelRK~~NRm~FG~~Eed~~~e~~G~g~GmlG~~gsGriR~~~vd~k 175 (1746)
|++.+||||+|+|.|||||||||+|||||+|+||||||+||||.||++|||+|+++.|+|+||||++++||||+.++++|
T Consensus 1 P~k~~KaLP~Pdd~pkKKRGGrR~RK~KEr~~~TelRK~~NRm~FG~~eee~~~~~~g~glGmlg~~~~grir~~~~~~k 80 (124)
T PF09785_consen 1 PAKQKKALPIPDDKPKKKRGGRRFRKMKERFAMTELRKAQNRMEFGEEEEEVYDFGEGIGLGMLGQSGSGRIRATQVDQK 80 (124)
T ss_pred CCCcCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHHHHHhcccCcchhhhcccccceeeeeeccCCCCceeeeecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHhhhhcccCccccccccccccceeeeccccc
Q psy11166 176 TKVRISKTLQKNLQRQQVWGGSTTVKKQVSGTTSSIAFTPLQL 218 (1746)
Q Consensus 176 tkarisK~l~k~l~~~~~~gg~~~~~~~tsG~aSSlaFTPvQG 218 (1746)
|+++|||+++++|+.+...+|. .+|||+|||||||+||
T Consensus 81 ~~ak~sK~~~~~l~~~~~~~~~-----~~sG~~sSlaftp~qg 118 (124)
T PF09785_consen 81 TKAKISKKMQKRLQSSGATTGG-----STSGLASSLAFTPVQG 118 (124)
T ss_pred hhhhhhHHHHHHHHhhccccCC-----cccchhhhhhcCCCcc
Confidence 9999999999999865433332 4699999999999999
No 11
>KOG1474|consensus
Probab=99.93 E-value=1.2e-26 Score=288.95 Aligned_cols=212 Identities=31% Similarity=0.429 Sum_probs=171.9
Q ss_pred cCCCccccccCCCCCC--CCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHH
Q psy11166 514 TEPNVKQFSFPVNAKL--VPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLT 591 (1746)
Q Consensus 514 ~~~~S~pFl~PVd~ke--~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek 591 (1746)
.+.++|+|..||+... .|+||.+|++|||++||..++.+++|.+..+-.+|+..+|.||..||..+-.+..+++.++.
T Consensus 6 ~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~ 85 (640)
T KOG1474|consen 6 KHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEK 85 (640)
T ss_pred cccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchh
Confidence 3578999999999644 89999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhhhH---------------------------HHHHHh----------hhhcC------------C---------
Q psy11166 592 LCVELLGKKE---------------------------ELLMRL----------EKAIN------------P--------- 613 (1746)
Q Consensus 592 ~fee~lke~E---------------------------e~l~rL----------EkaIn------------P--------- 613 (1746)
.+...+.... +...++ .+.+. |
T Consensus 86 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (640)
T KOG1474|consen 86 LFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQPFKSKN 165 (640)
T ss_pred hcccccccccccccCCcccccccccCcCCCCchhhhhhhhhccccccccCCcccccccccccccccCCCCCccccccccc
Confidence 8754432110 000000 00110 0
Q ss_pred -----------------------CCC----Cc--------------h----h---HhhhhhHHHHHHHHhhcCCcccccc
Q psy11166 614 -----------------------LLD----DN--------------D----Q---VALSFIFDDIVNNKLKNMADAWIFI 645 (1746)
Q Consensus 614 -----------------------lld----Dn--------------D----q---~aLS~IL~eIV~~kLk~~~~S~PF~ 645 (1746)
... .. . . ..+-.-|..|+ +.|+.|..+|||.
T Consensus 166 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iL-k~l~~~k~awpF~ 244 (640)
T KOG1474|consen 166 GVKKVADTCVKSYKSKSEREPSPGQKREGTVAPNSSRESGDSAAEEEAKPKSKLTVELLKQCLSIL-KRLMKHKHAWPFN 244 (640)
T ss_pred chhhhhccccccccccCcCCCCccccccccccCccccccccccccccccccccccHHHHHHHHHHH-HHHHhccCCCCcC
Confidence 000 00 0 0 00111244554 5888899999999
Q ss_pred ccCCccc--cccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11166 646 KPVNKKF--FKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKY 723 (1746)
Q Consensus 646 ~PVd~k~--vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fek~l~el 723 (1746)
.|||+.. +||||+||++||||+||++||.++.|.++.+|..||+|||.||++||+++++||.+|+.|+++|+..|..+
T Consensus 245 ~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~ 324 (640)
T KOG1474|consen 245 EPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASM 324 (640)
T ss_pred CCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999987 89999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHH
Q psy11166 724 DDH 726 (1746)
Q Consensus 724 ~~~ 726 (1746)
...
T Consensus 325 ~~~ 327 (640)
T KOG1474|consen 325 PLE 327 (640)
T ss_pred ccc
Confidence 655
No 12
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=99.87 E-value=4e-23 Score=214.02 Aligned_cols=82 Identities=40% Similarity=0.603 Sum_probs=62.5
Q ss_pred hhcccccce-EEEEEeeehhhHHh---------hcccccccccC----CCCCCCCC--------CCCCCCCc-chhhhhh
Q psy11166 1664 EFESSVAPH-LVVVVLTPWDETVI---------VGPGIGVREFS----GPSSGSGS--------AHPMGMRS-GNVLNRV 1720 (1746)
Q Consensus 1664 ~~e~~~~~~-~~vv~~~~~~~~~~---------~~p~l~~~~~~----~~~~~~~~--------~~~~~~~~-~~vl~rv 1720 (1746)
.||+||||+ +|||||++|++.+| |||+|+++.-. +..++.+. ..++++++ +||||||
T Consensus 45 kyE~Rnt~tikVvVIivl~Vi~lLvlYM~fL~~ldPllrk~~~~~~~~~~~e~~~d~~~~~~a~~~~~~~~~~~nVLnRV 124 (149)
T PF05434_consen 45 KYESRNTTTIKVVVIIVLWVIGLLVLYMLFLMCLDPLLRKRFGHNYQIHNNEDDEDAQPFANAHDSQSRSRSRSNVLNRV 124 (149)
T ss_pred eeeeeeeeEEEEEEEEeHHHHHHHHHHHHHHHHHhHHHhccccccccccccccccccccccccccccccccccchHHHHH
Confidence 499999999 88888888887744 99999776542 11111111 11223333 7899999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccC
Q psy11166 1721 GHQQDKWKRQVLEQRRNIYDKHTML 1745 (1746)
Q Consensus 1721 ~~~q~rwk~qv~eqr~~i~drh~ml 1745 (1746)
|++|+|||+||||||+|||||||||
T Consensus 125 ~~~Q~rWK~QVqEQRknIfdRHtmL 149 (149)
T PF05434_consen 125 EHAQQRWKRQVQEQRKNIFDRHTML 149 (149)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccC
Confidence 9999999999999999999999998
No 13
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.87 E-value=1.3e-22 Score=239.36 Aligned_cols=201 Identities=27% Similarity=0.435 Sum_probs=170.3
Q ss_pred cCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHH
Q psy11166 514 TEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLC 593 (1746)
Q Consensus 514 ~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek~f 593 (1746)
.+..+.+|+.+|++..+||||.+|+.||||.+|++||+.+.|.++++|..|++|||.||++||+++|.++.+|..|++.+
T Consensus 162 ~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~ 241 (371)
T COG5076 162 GRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYF 241 (371)
T ss_pred ccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHhhhhcCCCCCCchhHhhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHH
Q psy11166 594 VELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKA 673 (1746)
Q Consensus 594 ee~lke~Ee~l~rLEkaInPlldDnDq~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL 673 (1746)
..++++.................+. ....++ .-...+...|+|..+++....|+|++.|..+|++++.+-++
T Consensus 242 ~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~i-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 313 (371)
T COG5076 242 LKLIEEIPEEMLELSIKPGREEREE-------RESVLI-TNSQAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKL 313 (371)
T ss_pred HHHHHhccccchhhccCcccccccc-------chhhcc-cccccccccccccccCCcccccchhhhhhcccccccchhhh
Confidence 9999876544322221111111111 001111 12256777899999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11166 674 QSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEK 722 (1746)
Q Consensus 674 ~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fek~l~e 722 (1746)
..+.|+...+|..|..++++||..||+....++..+..+..++...+..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (371)
T COG5076 314 RNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRL 362 (371)
T ss_pred hcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhHhhhhhh
Confidence 9999999999999999999999999999999999999888877765543
No 14
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.8e-22 Score=201.49 Aligned_cols=112 Identities=56% Similarity=0.902 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy11166 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN 576 (1746)
|+.+++.|+.+|+++ +.++||+.||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||
T Consensus 1 ~~~~l~~ii~~l~~~----~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 76 (112)
T cd05511 1 LSFILDEIVNELKNL----PDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYN 76 (112)
T ss_pred CHHHHHHHHHHHHhC----CCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 356788888888876 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcC
Q psy11166 577 GAKSILTDAARRMLTLCVELLGKKEELLMRLEKAIN 612 (1746)
Q Consensus 577 ~~gS~I~k~A~~Lek~fee~lke~Ee~l~rLEkaIn 612 (1746)
+++|.++.+|..|++.|...+.+.++.+..+|+.|+
T Consensus 77 ~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~ 112 (112)
T cd05511 77 GPDSVYTKKAKEMLELAEELLAEREEKLTQLEKNIN 112 (112)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 999999999999999999999999999999999875
No 15
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=4.1e-22 Score=198.90 Aligned_cols=100 Identities=30% Similarity=0.447 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCC--CCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAK--LVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~k--e~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
.+..+++.|+..|.++ +.++||+.|||+. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||+
T Consensus 5 q~~~~~~~il~~l~~~----~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05497 5 QLQYLLKVVLKALWKH----KFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCY 80 (107)
T ss_pred HHHHHHHHHHHHHHhC----CcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 5566667777777664 8899999999986 699999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhhh
Q psy11166 574 LYNGAKSILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 574 ~YN~~gS~I~k~A~~Lek~fee~lke 599 (1746)
.||+++|+++.+|..|++.|++.+++
T Consensus 81 ~yN~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 81 IYNKPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998864
No 16
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=4.4e-22 Score=195.62 Aligned_cols=95 Identities=33% Similarity=0.480 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCC
Q psy11166 499 SILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGA 578 (1746)
Q Consensus 499 ~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~ 578 (1746)
+.|.+|++.|+++ +.++||+.||++..+||||++|++||||+||++||+++.|.|+++|.+||+|||.||++||++
T Consensus 3 ~~c~~il~~l~~~----~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 78 (97)
T cd05505 3 QKCEEILSKILKY----RFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYEN 78 (97)
T ss_pred HHHHHHHHHHHhC----CCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4577888888875 779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHh
Q psy11166 579 KSILTDAARRMLTLCVELL 597 (1746)
Q Consensus 579 gS~I~k~A~~Lek~fee~l 597 (1746)
+|.++.+|.+|++.|.+++
T Consensus 79 ~s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 79 GSYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 17
>KOG4007|consensus
Probab=99.86 E-value=1.2e-22 Score=215.56 Aligned_cols=83 Identities=37% Similarity=0.545 Sum_probs=64.0
Q ss_pred hhcccccce-EEEEEeeehhhHHh---------hcccccccccC-------CCCC-CCCCCCC----CCCCc-chhhhhh
Q psy11166 1664 EFESSVAPH-LVVVVLTPWDETVI---------VGPGIGVREFS-------GPSS-GSGSAHP----MGMRS-GNVLNRV 1720 (1746)
Q Consensus 1664 ~~e~~~~~~-~~vv~~~~~~~~~~---------~~p~l~~~~~~-------~~~~-~~~~~~~----~~~~~-~~vl~rv 1720 (1746)
.||+||+|+ +|||||+||+|.+| |||+|+++.-- ++.+ .++++.+ +++|+ +||||||
T Consensus 124 rye~RnTtliKVvvIivi~ii~iL~lYMvfLmcldPlLrKr~~~~yq~hnded~ed~~s~ana~d~~g~~rAraNVLnRV 203 (229)
T KOG4007|consen 124 RYEERNTTLIKVVVIIVISIIGILLLYMVFLMCLDPLLRKRVKANYQEHNDEDDEDSPSPANAADNLGELRARANVLNRV 203 (229)
T ss_pred cccccCceEEEEEEeehHHHHHHHHHHHHHHHhhhHHHhhhhhhhHHHhcccccccCCCccchhhhcccchHHHHHHHHH
Confidence 499999998 99999999988755 99999884321 1111 1222222 23444 5699999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccCC
Q psy11166 1721 GHQQDKWKRQVLEQRRNIYDKHTMLN 1746 (1746)
Q Consensus 1721 ~~~q~rwk~qv~eqr~~i~drh~ml~ 1746 (1746)
|++|||||+|||||||+|||||||||
T Consensus 204 e~~Q~rWk~qVqEQRr~ifdrHtmLn 229 (229)
T KOG4007|consen 204 EHAQQRWKLQVQEQRRHIFDRHTMLN 229 (229)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccC
Confidence 99999999999999999999999997
No 18
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=6e-22 Score=195.41 Aligned_cols=97 Identities=37% Similarity=0.654 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcc
Q psy11166 495 VVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTL 574 (1746)
Q Consensus 495 ~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~ 574 (1746)
..|+.+|+.++..|+ + +.++||..||+++.+||||.+|++||||+||++||++|.|.++++|.+||+|||.||++
T Consensus 2 ~~l~~~L~~~~~~~~-~----~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~ 76 (99)
T cd05508 2 DQLSKLLKFALERMK-Q----PGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAII 76 (99)
T ss_pred hHHHHHHHHHHHHHh-C----cCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 357788888888877 4 78999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHH
Q psy11166 575 YNGAKSILTDAARRMLTLCVEL 596 (1746)
Q Consensus 575 YN~~gS~I~k~A~~Lek~fee~ 596 (1746)
||+++|.++.+|+.|.+.|...
T Consensus 77 YN~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 77 YNGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred HCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998764
No 19
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.1e-21 Score=195.11 Aligned_cols=111 Identities=59% Similarity=0.926 Sum_probs=106.0
Q ss_pred hhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy11166 623 LSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPG 702 (1746)
Q Consensus 623 LS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~ 702 (1746)
++++|+.|+. .++.++.++||..||++..+|+||++|++||||+||++||.++.|+++++|..||+|||+||+.||+++
T Consensus 1 ~~~~l~~ii~-~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 79 (112)
T cd05511 1 LSFILDEIVN-ELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPD 79 (112)
T ss_pred CHHHHHHHHH-HHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678888885 888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 703 SQVTEKAEKLLEEAKLALEKYDDHLTQLEKTI 734 (1746)
Q Consensus 703 S~Iy~~A~~Lqk~fek~l~el~~~l~qlE~~I 734 (1746)
|.++.+|..|.+.|...++++.+.+..++..|
T Consensus 80 s~i~~~A~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (112)
T cd05511 80 SVYTKKAKEMLELAEELLAEREEKLTQLEKNI 111 (112)
T ss_pred CHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 99999999999999999999999999988765
No 20
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=1.4e-21 Score=195.07 Aligned_cols=100 Identities=29% Similarity=0.497 Sum_probs=94.2
Q ss_pred hhhhhHHHHHHHHhhcCCccccccccCCcc--ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccC
Q psy11166 622 ALSFIFDDIVNNKLKNMADAWIFIKPVNKK--FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYN 699 (1746)
Q Consensus 622 aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k--~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN 699 (1746)
.++++++.++. .+..++.++||..|||+. .+||||++|++||||+||++||.++.|+++++|.+||+|||.||+.||
T Consensus 5 q~~~~~~~il~-~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (107)
T cd05497 5 QLQYLLKVVLK-ALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYN 83 (107)
T ss_pred HHHHHHHHHHH-HHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 47888888774 788999999999999987 599999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q psy11166 700 GPGSQVTEKAEKLLEEAKLALEK 722 (1746)
Q Consensus 700 ~p~S~Iy~~A~~Lqk~fek~l~e 722 (1746)
+++|.++..|..|++.|.+.+.+
T Consensus 84 ~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 84 KPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999998865
No 21
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2e-21 Score=197.47 Aligned_cols=105 Identities=30% Similarity=0.387 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcc
Q psy11166 495 VVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTL 574 (1746)
Q Consensus 495 ~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~ 574 (1746)
..+...|..|++.|+++ +.++||+.||++..+||||++|++||||+||++||.++.|.++.+|..||+|||.||++
T Consensus 4 ~~w~~~c~~il~~l~~~----~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~ 79 (119)
T cd05496 4 SDWKKQCKELVNLMWDC----EDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKS 79 (119)
T ss_pred HHHHHHHHHHHHHHHhC----CccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45677888888888876 78999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CChHHHHHHHHHHHHHHHhhhhHHH
Q psy11166 575 YNGA-KSILTDAARRMLTLCVELLGKKEEL 603 (1746)
Q Consensus 575 YN~~-gS~I~k~A~~Lek~fee~lke~Ee~ 603 (1746)
||++ +|.++.+|..|++.|++.+.+....
T Consensus 80 yN~~~~s~i~~~a~~L~~~F~~~~~~l~~~ 109 (119)
T cd05496 80 YTPNKRSRIYSMTLRLSALFEEHIKKIISD 109 (119)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9985 8999999999999999999876543
No 22
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=1.7e-21 Score=194.30 Aligned_cols=103 Identities=23% Similarity=0.420 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcc
Q psy11166 497 LTSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTL 574 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~ 574 (1746)
|+..|+.|++.|+++.+. ++.++||+.||++..+||||++|++||||+||++||.+|.|.++.+|..||.|||.||+.
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 567888999999998763 567999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhh
Q psy11166 575 YNGAKSILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 575 YN~~gS~I~k~A~~Lek~fee~lke 599 (1746)
||+++|+++.+|..|++.|.+.+++
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988764
No 23
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=3.4e-21 Score=192.53 Aligned_cols=101 Identities=30% Similarity=0.494 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCC--CCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAK--LVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~k--e~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
.|.+.|..++..|++. ++.++||+.||+++ .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+
T Consensus 3 ~l~~~~~~il~~l~~~---~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~ 79 (108)
T cd05495 3 ELRQALMPTLEKLYKQ---DPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAW 79 (108)
T ss_pred HHHHHHHHHHHHHHHc---CcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4566677777777654 37899999999987 699999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhhh
Q psy11166 574 LYNGAKSILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 574 ~YN~~gS~I~k~A~~Lek~fee~lke 599 (1746)
.||+++|.++.+|.+|++.|++.++.
T Consensus 80 ~yN~~~s~i~~~a~~l~~~F~~~~~~ 105 (108)
T cd05495 80 LYNRKTSRVYKYCTKLAEVFEQEIDP 105 (108)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754
No 24
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=3.3e-21 Score=188.91 Aligned_cols=95 Identities=38% Similarity=0.579 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCC
Q psy11166 499 SILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGA 578 (1746)
Q Consensus 499 ~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~ 578 (1746)
..|..|+.+|..+ +.++||+.||+++.+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||++
T Consensus 3 ~~c~~il~~l~~~----~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 78 (97)
T cd05503 3 ALCETILDEMEAH----EDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNED 78 (97)
T ss_pred HHHHHHHHHHHcC----CCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4577788888775 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHh
Q psy11166 579 KSILTDAARRMLTLCVELL 597 (1746)
Q Consensus 579 gS~I~k~A~~Lek~fee~l 597 (1746)
+|.++++|..|++.|++.|
T Consensus 79 ~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 79 DSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999875
No 25
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1.1e-20 Score=192.08 Aligned_cols=106 Identities=25% Similarity=0.335 Sum_probs=96.8
Q ss_pred hhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCC-
Q psy11166 623 LSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP- 701 (1746)
Q Consensus 623 LS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p- 701 (1746)
....+..|+ ..+..++.++||..||++..+||||++|++||||+||++||.++.|.++++|.+||+|||.||++||++
T Consensus 6 w~~~c~~il-~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~ 84 (119)
T cd05496 6 WKKQCKELV-NLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNK 84 (119)
T ss_pred HHHHHHHHH-HHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 444556666 477789999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 702 GSQVTEKAEKLLEEAKLALEKYDDHLTQ 729 (1746)
Q Consensus 702 ~S~Iy~~A~~Lqk~fek~l~el~~~l~q 729 (1746)
+|.+|.+|..|++.|+..+.++...+..
T Consensus 85 ~s~i~~~a~~L~~~F~~~~~~l~~~~~~ 112 (119)
T cd05496 85 RSRIYSMTLRLSALFEEHIKKIISDWKS 112 (119)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877653
No 26
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=5.7e-21 Score=189.65 Aligned_cols=100 Identities=24% Similarity=0.374 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
.+...|..|++.|.+ ++.++||..||++..+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++|
T Consensus 3 ~~~~~~~~il~~l~~----~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 78 (104)
T cd05507 3 AWKKAILLVYRTLAS----HRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMY 78 (104)
T ss_pred HHHHHHHHHHHHHHc----CCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345556666666655 4889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhh
Q psy11166 576 NGAKSILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~lke 599 (1746)
|+++|.++.+|..|++.+.+.+..
T Consensus 79 N~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 79 NSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999887753
No 27
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=5e-21 Score=188.96 Aligned_cols=96 Identities=34% Similarity=0.538 Sum_probs=89.8
Q ss_pred hhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy11166 622 ALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP 701 (1746)
Q Consensus 622 aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p 701 (1746)
.|+.+|+.++. +++ ++.+|||..||++..+||||++|++||||+||++||.++.|+++++|.+||+|||.||++||++
T Consensus 3 ~l~~~L~~~~~-~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~ 80 (99)
T cd05508 3 QLSKLLKFALE-RMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGG 80 (99)
T ss_pred HHHHHHHHHHH-HHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46778887774 777 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy11166 702 GSQVTEKAEKLLEEAKLA 719 (1746)
Q Consensus 702 ~S~Iy~~A~~Lqk~fek~ 719 (1746)
+|.++..|..|.+.|...
T Consensus 81 ~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 81 DHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 999999999999988753
No 28
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=7.9e-21 Score=191.24 Aligned_cols=104 Identities=34% Similarity=0.509 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q psy11166 494 VVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 494 ~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
...+.+.|..|+.+|+++. +.++||+.||+++.+||||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 5 ~~~~~~~~~~il~~l~~~~---~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~ 81 (112)
T cd05510 5 QEEFYESLDKVLNELKTYT---EHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCL 81 (112)
T ss_pred HHHHHHHHHHHHHHHHhcC---ccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 4578888999999998863 5689999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC-hHHHHHHHHHHHHHHHhhhh
Q psy11166 574 LYNGAKS-ILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 574 ~YN~~gS-~I~k~A~~Lek~fee~lke~ 600 (1746)
.||+++| +++++|..|++.|+..+...
T Consensus 82 ~yN~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 82 LYNSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9999876 68899999999999988653
No 29
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.84 E-value=5.5e-21 Score=190.04 Aligned_cols=101 Identities=21% Similarity=0.386 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 498 TSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 498 s~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
.+.|.+|+..|+++++. ++.++||+.||+++.+||||++|++||||+||++||.++.|.++++|..||.|||.||++|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46688888888888764 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhh
Q psy11166 576 NGAKSILTDAARRMLTLCVELLG 598 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~lk 598 (1746)
|+++|.++.+|..|++.|.+..+
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999987653
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=8.5e-21 Score=189.34 Aligned_cols=101 Identities=25% Similarity=0.389 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q psy11166 496 VLTSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
.|...|+.||..|+.+++. +..++||+.+|++..+||||++|++||||++|++||.++.|.++++|..||.|||.||+
T Consensus 2 ~l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~ 81 (106)
T cd05525 2 RLAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAE 81 (106)
T ss_pred hHHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677889999999998776 46799999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHH
Q psy11166 574 LYNGAKSILTDAARRMLTLCVEL 596 (1746)
Q Consensus 574 ~YN~~gS~I~k~A~~Lek~fee~ 596 (1746)
.||+++|.++.+|..|++.|++.
T Consensus 82 ~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 82 KYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999763
No 31
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=8.4e-21 Score=186.65 Aligned_cols=99 Identities=32% Similarity=0.585 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy11166 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN 576 (1746)
+...|..|++.|+++ +.++||+.||++..+|+||++|++||||+||++||.++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~~~~~il~~l~~~----~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 77 (101)
T cd05509 2 LYTQLKKVLDSLKNH----KSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYN 77 (101)
T ss_pred hHHHHHHHHHHHHhC----CCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 456778888888776 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhh
Q psy11166 577 GAKSILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 577 ~~gS~I~k~A~~Lek~fee~lke 599 (1746)
+++|+++.+|..|++.|++.+++
T Consensus 78 ~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 78 GPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998865
No 32
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.1e-20 Score=190.93 Aligned_cols=101 Identities=35% Similarity=0.535 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
.....|..|+..|+.+ +.++||+.||++..+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++|
T Consensus 12 ~~~~~c~~il~~l~~~----~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~y 87 (115)
T cd05504 12 LNLSALEQLLVEIVKH----KDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLY 87 (115)
T ss_pred HHHHHHHHHHHHHHhC----CCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456678888888875 779999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 576 NGAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
|+++|.++.+|..|++.|++.+++.
T Consensus 88 N~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 88 NPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998763
No 33
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=7.3e-21 Score=187.08 Aligned_cols=93 Identities=32% Similarity=0.471 Sum_probs=86.2
Q ss_pred HHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHH
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVT 706 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy 706 (1746)
+.+|+ ..+..++.++||..||++..+||||++|++||||+||++||+++.|.|+++|.+||+|||.||++||+++|.++
T Consensus 5 c~~il-~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 83 (97)
T cd05505 5 CEEIL-SKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVL 83 (97)
T ss_pred HHHHH-HHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 34555 36667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11166 707 EKAEKLLEEAKLAL 720 (1746)
Q Consensus 707 ~~A~~Lqk~fek~l 720 (1746)
..|..|++.|.+++
T Consensus 84 ~~a~~le~~f~~~~ 97 (97)
T cd05505 84 SCMRKTEQCCVNLL 97 (97)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998753
No 34
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.6e-20 Score=187.70 Aligned_cols=101 Identities=28% Similarity=0.466 Sum_probs=91.1
Q ss_pred hhhhHHHHHHHHhhcCCccccccccCCcc--ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy11166 623 LSFIFDDIVNNKLKNMADAWIFIKPVNKK--FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 700 (1746)
Q Consensus 623 LS~IL~eIV~~kLk~~~~S~PF~~PVd~k--~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~ 700 (1746)
+...+..++.+.++.++.+|||..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+
T Consensus 4 l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 83 (108)
T cd05495 4 LRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNR 83 (108)
T ss_pred HHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 55566666654444449999999999997 5999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy11166 701 PGSQVTEKAEKLLEEAKLALEKY 723 (1746)
Q Consensus 701 p~S~Iy~~A~~Lqk~fek~l~el 723 (1746)
++|.++.+|..|++.|++.++..
T Consensus 84 ~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 84 KTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 35
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.1e-20 Score=186.98 Aligned_cols=101 Identities=28% Similarity=0.440 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhccc--cCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcc
Q psy11166 497 LTSILEKILNEMRDMSQ--TEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTL 574 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~--~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~ 574 (1746)
|+..|.+|+..|+++++ .++.+++|+.||++..+||||++|++||||++|++||+.+.|.++.+|..||+|||.||+.
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANART 80 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 35678888999988875 4677999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHh
Q psy11166 575 YNGAKSILTDAARRMLTLCVELL 597 (1746)
Q Consensus 575 YN~~gS~I~k~A~~Lek~fee~l 597 (1746)
||+++|.++.+|..|++.|++++
T Consensus 81 yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 81 YNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998753
No 36
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=1.4e-20 Score=185.37 Aligned_cols=95 Identities=32% Similarity=0.585 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy11166 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN 576 (1746)
|..+|..|+..|+.. +.+++|+.||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||
T Consensus 2 l~~~l~~il~~l~~~----~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 77 (98)
T cd05513 2 LQKALEQLIRQLQRK----DPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYN 77 (98)
T ss_pred HHHHHHHHHHHHHcC----CccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 445666777776654 7799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHH
Q psy11166 577 GAKSILTDAARRMLTLCVE 595 (1746)
Q Consensus 577 ~~gS~I~k~A~~Lek~fee 595 (1746)
+++|.++++|.+|.....+
T Consensus 78 ~~~s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 78 KPDTIYYKAAKKLLHSGMK 96 (98)
T ss_pred CCCCHHHHHHHHHHHhhhh
Confidence 9999999999999876554
No 37
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=1.7e-20 Score=185.14 Aligned_cols=98 Identities=27% Similarity=0.417 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhccccCCCccccccCCCCC--CCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy11166 499 SILEKILNEMRDMSQTEPNVKQFSFPVNAK--LVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576 (1746)
Q Consensus 499 ~~LeeIL~eL~s~~~~~~~S~pFl~PVd~k--e~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN 576 (1746)
..|.+|++.|+... .++.++||+.||++. .+||||++|++||||++|++||+++.|+++.+|..||+|||.||+.||
T Consensus 3 ~~c~~Il~~l~~~~-~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 3 KFCEEVLKELMKPK-HSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred HHHHHHHHHHHccc-CCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46778888888753 247899999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHh
Q psy11166 577 GAKSILTDAARRMLTLCVELL 597 (1746)
Q Consensus 577 ~~gS~I~k~A~~Lek~fee~l 597 (1746)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 38
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.82 E-value=1.4e-20 Score=186.85 Aligned_cols=98 Identities=26% Similarity=0.436 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 498 TSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 498 s~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
++++++++..|+++.+. ++.+++|+.+|+++.+||||++|++||||+||++||+++.|.++.+|..||+|||.||++|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788888888887764 6779999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHH
Q psy11166 576 NGAKSILTDAARRMLTLCVE 595 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee 595 (1746)
|+++|.++.+|..|++.|..
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 39
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.82 E-value=1.6e-20 Score=186.42 Aligned_cols=96 Identities=27% Similarity=0.443 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCC
Q psy11166 501 LEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGA 578 (1746)
Q Consensus 501 LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~ 578 (1746)
+..|+..|+++++. ++.++||+.||++..+||||++|++||||+||++||+++.|.++.+|..||+|||.||++||++
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~ 84 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVP 84 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45667777777655 4679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHH
Q psy11166 579 KSILTDAARRMLTLCVEL 596 (1746)
Q Consensus 579 gS~I~k~A~~Lek~fee~ 596 (1746)
+|.++.+|..|+++|++.
T Consensus 85 ~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 85 NSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999999764
No 40
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=1.8e-20 Score=184.50 Aligned_cols=94 Identities=35% Similarity=0.584 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy11166 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN 576 (1746)
+..+|+.++..|+.+ +.+++|..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||+.||
T Consensus 2 ~~~~l~~il~~l~~~----~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 77 (98)
T cd05512 2 LEVLLRKTLDQLQEK----DTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYN 77 (98)
T ss_pred HHHHHHHHHHHHHhC----CCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 456677778877764 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHH
Q psy11166 577 GAKSILTDAARRMLTLCV 594 (1746)
Q Consensus 577 ~~gS~I~k~A~~Lek~fe 594 (1746)
+++|.++++|.+|++...
T Consensus 78 ~~~s~~~~~A~~l~~~~~ 95 (98)
T cd05512 78 AKDTIFYRAAVRLRDQGG 95 (98)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999999987653
No 41
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=3.6e-20 Score=183.98 Aligned_cols=99 Identities=28% Similarity=0.391 Sum_probs=91.1
Q ss_pred hhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy11166 623 LSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPG 702 (1746)
Q Consensus 623 LS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~ 702 (1746)
++..+..++ +.+..++.++||..||++..+|+||++|++||||+||++||+++.|+++++|.+||.|||+||++||+++
T Consensus 4 ~~~~~~~il-~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 82 (104)
T cd05507 4 WKKAILLVY-RTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSD 82 (104)
T ss_pred HHHHHHHHH-HHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 444555555 5888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q psy11166 703 SQVTEKAEKLLEEAKLALEK 722 (1746)
Q Consensus 703 S~Iy~~A~~Lqk~fek~l~e 722 (1746)
|.++.+|..|++.|.+.++.
T Consensus 83 s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 83 HDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999887764
No 42
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=3.5e-20 Score=186.59 Aligned_cols=104 Identities=33% Similarity=0.499 Sum_probs=94.2
Q ss_pred hHhhhhhHHHHHHHHhhcC-CccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Q psy11166 620 QVALSFIFDDIVNNKLKNM-ADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLY 698 (1746)
Q Consensus 620 q~aLS~IL~eIV~~kLk~~-~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tY 698 (1746)
|..+...+.+++. .++.+ +.++||..||++..+||||++|++||||+||++||.++.|+|+++|.+|++|||.||+.|
T Consensus 5 ~~~~~~~~~~il~-~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~y 83 (112)
T cd05510 5 QEEFYESLDKVLN-ELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLY 83 (112)
T ss_pred HHHHHHHHHHHHH-HHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4556667777775 66666 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHH
Q psy11166 699 NGPGS-QVTEKAEKLLEEAKLALEKYD 724 (1746)
Q Consensus 699 N~p~S-~Iy~~A~~Lqk~fek~l~el~ 724 (1746)
|+++| .++.+|..|++.|..++..++
T Consensus 84 N~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 84 NSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 99765 678999999999999988764
No 43
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.81 E-value=3.7e-20 Score=183.84 Aligned_cols=96 Identities=27% Similarity=0.409 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcc--ccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCC
Q psy11166 501 LEKILNEMRDMS--QTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGA 578 (1746)
Q Consensus 501 LeeIL~eL~s~~--~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~ 578 (1746)
+..|+..|+.+. ..+..+.+|+.+|+++.+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 5 ~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 84 (103)
T cd05518 5 MLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEE 84 (103)
T ss_pred HHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 555666666654 346779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHH
Q psy11166 579 KSILTDAARRMLTLCVEL 596 (1746)
Q Consensus 579 gS~I~k~A~~Lek~fee~ 596 (1746)
+|+++.+|..|+++|+++
T Consensus 85 ~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 85 GSQVYEDANILEKVLKEK 102 (103)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999998763
No 44
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.81 E-value=5.7e-20 Score=185.07 Aligned_cols=100 Identities=30% Similarity=0.555 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
.+..+|..|++.|+++ +.++||..||++..+||||++|++||||+||++||++++|.|+++|.+||+|||.||+.|
T Consensus 3 ~lr~~L~~il~~l~~~----~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 78 (112)
T cd05528 3 ELRLFLRDVLKRLASD----KRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEY 78 (112)
T ss_pred HHHHHHHHHHHHHHhC----CCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4667778888888775 789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC----ChHHHHHHHHHHHHHHHhhh
Q psy11166 576 NGAK----SILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 576 N~~g----S~I~k~A~~Lek~fee~lke 599 (1746)
|+++ |.++.+|..|++.+.+++.+
T Consensus 79 N~~~s~~~s~i~~~A~~L~~~~~~~~~~ 106 (112)
T cd05528 79 NPDRDPADKLIRSRACELRDEVHAMIEA 106 (112)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHh
Confidence 9994 68999999999999888754
No 45
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.81 E-value=4.8e-20 Score=185.77 Aligned_cols=102 Identities=19% Similarity=0.405 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy11166 499 SILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576 (1746)
Q Consensus 499 ~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN 576 (1746)
..|.+|+..|+++.+. ++.+.+|+.+|+++.+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||
T Consensus 5 ~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 84 (113)
T cd05524 5 AVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYY 84 (113)
T ss_pred HHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4567777888876554 56689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 577 GAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 577 ~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
+++|.++.+|..|++.|++.+++.
T Consensus 85 ~~~s~~~~~A~~L~~~f~~~~~~~ 108 (113)
T cd05524 85 KPDSPEHKDACKLWELFLSARNEV 108 (113)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987654
No 46
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=5.9e-20 Score=180.98 Aligned_cols=98 Identities=28% Similarity=0.433 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhccccCCCccccccCCCCC--CCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy11166 499 SILEKILNEMRDMSQTEPNVKQFSFPVNAK--LVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576 (1746)
Q Consensus 499 ~~LeeIL~eL~s~~~~~~~S~pFl~PVd~k--e~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN 576 (1746)
..|.+|++.|++.. ..+.++||+.||++. .+||||++|++||||++|++||.++.|.++.+|..||+|||.||+.||
T Consensus 3 ~~c~~il~~l~~~~-~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 3 KFCSGILKELFSKK-HKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hHHHHHHHHHHhCC-CccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45778888888762 347899999999986 599999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHh
Q psy11166 577 GAKSILTDAARRMLTLCVELL 597 (1746)
Q Consensus 577 ~~gS~I~k~A~~Lek~fee~l 597 (1746)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 47
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=8.3e-20 Score=182.45 Aligned_cols=98 Identities=34% Similarity=0.496 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhc---CCCCCHHHHHHHHHHhhhhhc
Q psy11166 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRS---KKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~---g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
....|.+|+.+|+.+ +.++||+.||++ .+|+||++|++||||+||++||+. +.|.++++|.+||+|||.||+
T Consensus 5 ~~~~c~~il~~l~~~----~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 5 DQRKCERLLLELYCH----ELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHhC----CCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 346677888888765 789999999999 899999999999999999999998 599999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhhh
Q psy11166 574 LYNGAKSILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 574 ~YN~~gS~I~k~A~~Lek~fee~lke 599 (1746)
.||+++|.++.+|..|++.|++.+.+
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~ 105 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKE 105 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 48
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.81 E-value=5.3e-20 Score=180.29 Aligned_cols=96 Identities=28% Similarity=0.438 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhccccCCCccccccCCCCC--CCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 498 TSILEKILNEMRDMSQTEPNVKQFSFPVNAK--LVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 498 s~~LeeIL~eL~s~~~~~~~S~pFl~PVd~k--e~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
...|..|+..|+++ +.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|..|++|||.||++|
T Consensus 2 ~~~c~~il~~l~~~----~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 77 (99)
T cd05506 2 MKQCGTLLRKLMKH----KWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRY 77 (99)
T ss_pred HHHHHHHHHHHHhC----CCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35677888888865 7799999999976 69999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHh
Q psy11166 576 NGAKSILTDAARRMLTLCVELL 597 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~l 597 (1746)
|+++|.++.+|..|++.|+++|
T Consensus 78 n~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 78 NPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999875
No 49
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=9.3e-20 Score=184.19 Aligned_cols=97 Identities=33% Similarity=0.563 Sum_probs=90.3
Q ss_pred hHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHH
Q psy11166 626 IFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 705 (1746)
Q Consensus 626 IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~I 705 (1746)
.+..|+. .+..++.++||..||++..+||||++|++||||+||++||.++.|.|+++|..||+|||.||++||+++|.+
T Consensus 16 ~c~~il~-~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i 94 (115)
T cd05504 16 ALEQLLV-EIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSV 94 (115)
T ss_pred HHHHHHH-HHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 4555554 666788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11166 706 TEKAEKLLEEAKLALEKY 723 (1746)
Q Consensus 706 y~~A~~Lqk~fek~l~el 723 (1746)
+.+|..|+.+|.+.++++
T Consensus 95 ~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 95 YKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999988765
No 50
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=1.1e-19 Score=178.81 Aligned_cols=97 Identities=38% Similarity=0.630 Sum_probs=90.0
Q ss_pred hHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHH
Q psy11166 626 IFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 705 (1746)
Q Consensus 626 IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~I 705 (1746)
.+..++ ..+..++.++||..||++..+|+||++|++||||+||++||.++.|+|+++|..||+|||+||++||+++|.+
T Consensus 5 ~~~~il-~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~ 83 (101)
T cd05509 5 QLKKVL-DSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEY 83 (101)
T ss_pred HHHHHH-HHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 344555 4677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11166 706 TEKAEKLLEEAKLALEKY 723 (1746)
Q Consensus 706 y~~A~~Lqk~fek~l~el 723 (1746)
+.+|..|++.|++.++++
T Consensus 84 ~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 84 YKCANKLEKFFWKKLKEL 101 (101)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999988763
No 51
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=9.4e-20 Score=178.74 Aligned_cols=93 Identities=29% Similarity=0.549 Sum_probs=86.2
Q ss_pred HHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHH
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVT 706 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy 706 (1746)
+..|+ ..+..++.++||..||++..+|+||++|++||||+||++||.++.|+|+++|..||+|||.||+.||+++|.++
T Consensus 5 c~~il-~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 83 (97)
T cd05503 5 CETIL-DEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVG 83 (97)
T ss_pred HHHHH-HHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 34444 36677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11166 707 EKAEKLLEEAKLAL 720 (1746)
Q Consensus 707 ~~A~~Lqk~fek~l 720 (1746)
.+|..|++.|+..|
T Consensus 84 ~~a~~l~~~f~~~~ 97 (97)
T cd05503 84 RAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998753
No 52
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.80 E-value=9.9e-20 Score=183.32 Aligned_cols=103 Identities=32% Similarity=0.560 Sum_probs=94.5
Q ss_pred hhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy11166 622 ALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP 701 (1746)
Q Consensus 622 aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p 701 (1746)
.++.+|..++. +++.++.++||..||++..+||||++|++||||+||++||+++.|.|+++|.+||+|||.||+.||++
T Consensus 3 ~lr~~L~~il~-~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 81 (112)
T cd05528 3 ELRLFLRDVLK-RLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPD 81 (112)
T ss_pred HHHHHHHHHHH-HHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46667777774 78889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C----CHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 702 G----SQVTEKAEKLLEEAKLALEKYDD 725 (1746)
Q Consensus 702 ~----S~Iy~~A~~Lqk~fek~l~el~~ 725 (1746)
+ |.++.+|..|++.|.+++.+..+
T Consensus 82 ~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 82 RDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 4 79999999999999998876543
No 53
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=8.7e-20 Score=179.75 Aligned_cols=93 Identities=28% Similarity=0.497 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCC
Q psy11166 624 SFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGS 703 (1746)
Q Consensus 624 S~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S 703 (1746)
..+|+.++ ..|+.++.+++|..||++..+||||++|++||||+||++||.++.|+|+++|..||+|||.||+.||+++|
T Consensus 3 ~~~l~~il-~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 81 (98)
T cd05512 3 EVLLRKTL-DQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDT 81 (98)
T ss_pred HHHHHHHH-HHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 34566665 47888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11166 704 QVTEKAEKLLEEAK 717 (1746)
Q Consensus 704 ~Iy~~A~~Lqk~fe 717 (1746)
.+|.+|..|++...
T Consensus 82 ~~~~~A~~l~~~~~ 95 (98)
T cd05512 82 IFYRAAVRLRDQGG 95 (98)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988654
No 54
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=1.6e-19 Score=178.75 Aligned_cols=97 Identities=30% Similarity=0.538 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhccccCCCccccccCCCCC--CCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcc
Q psy11166 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAK--LVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTL 574 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~k--e~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~ 574 (1746)
....|.+|++.|+++ +.++||+.||++. .+||||++|++||||++|++||.++.|.++.+|..||+|||.||+.
T Consensus 5 ~~~~~~~ii~~l~~~----~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05500 5 QHKFLLSSIRSLKRL----KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLT 80 (103)
T ss_pred HHHHHHHHHHHHHcC----CCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 445666777777655 7899999999976 6999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHh
Q psy11166 575 YNGAKSILTDAARRMLTLCVELL 597 (1746)
Q Consensus 575 YN~~gS~I~k~A~~Lek~fee~l 597 (1746)
||+++|.++.+|..|++.|++.+
T Consensus 81 yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 81 FNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998753
No 55
>KOG1472|consensus
Probab=99.80 E-value=7.8e-20 Score=225.80 Aligned_cols=95 Identities=35% Similarity=0.571 Sum_probs=89.2
Q ss_pred HHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q psy11166 632 NNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEK 711 (1746)
Q Consensus 632 ~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~ 711 (1746)
...+.+|..+|||.+||+.+++||||++|++||||.||+.+|.+++|.....|+.|+.+||.||+.||+.++.+|..|..
T Consensus 615 l~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~ 694 (720)
T KOG1472|consen 615 LDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQA 694 (720)
T ss_pred HhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecccc
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy11166 712 LLEEAKLALEKYDDH 726 (1746)
Q Consensus 712 Lqk~fek~l~el~~~ 726 (1746)
|...|...+.+....
T Consensus 695 le~~~~~k~~~~i~~ 709 (720)
T KOG1472|consen 695 LEKFFLFKLNELILR 709 (720)
T ss_pred hhhhhcchhhhhhhh
Confidence 999998888766433
No 56
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=1.3e-19 Score=178.78 Aligned_cols=93 Identities=27% Similarity=0.454 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCC
Q psy11166 624 SFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGS 703 (1746)
Q Consensus 624 S~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S 703 (1746)
..++.+|+ ..++.++.+++|..||+...+||||++|++||||+||++||+++.|.|+++|.+||+|||.||++||+++|
T Consensus 3 ~~~l~~il-~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 81 (98)
T cd05513 3 QKALEQLI-RQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDT 81 (98)
T ss_pred HHHHHHHH-HHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 44566666 47888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy11166 704 QVTEKAEKLLEEAK 717 (1746)
Q Consensus 704 ~Iy~~A~~Lqk~fe 717 (1746)
.+|.+|..|.....
T Consensus 82 ~~~~~A~~L~~~~~ 95 (98)
T cd05513 82 IYYKAAKKLLHSGM 95 (98)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999977544
No 57
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.79 E-value=1.8e-19 Score=178.87 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCC
Q psy11166 500 ILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAK 579 (1746)
Q Consensus 500 ~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~g 579 (1746)
.|++|+.+|..+ +.+++|..+ +..+||||++|++||||+||++||.++.|.++++|.+||+|||.||++||+++
T Consensus 6 ~ce~il~~l~~~----~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~ 79 (102)
T cd05501 6 KCEFLLLKVYCM----SKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD 79 (102)
T ss_pred HHHHHHHHHHhC----cccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 388888888876 678899663 46899999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhhh
Q psy11166 580 SILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 580 S~I~k~A~~Lek~fee~lke~ 600 (1746)
.++.+|..|++.|++.+++.
T Consensus 80 -~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 80 -DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 58
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.79 E-value=2.1e-19 Score=179.37 Aligned_cols=100 Identities=28% Similarity=0.405 Sum_probs=87.8
Q ss_pred hhhhHHHHHHHHh-hcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy11166 623 LSFIFDDIVNNKL-KNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP 701 (1746)
Q Consensus 623 LS~IL~eIV~~kL-k~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p 701 (1746)
+..++..++..+- .+++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||.|||.||++||++
T Consensus 6 ~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (107)
T cd05516 6 MNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLE 85 (107)
T ss_pred HHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4445555543222 234458999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q psy11166 702 GSQVTEKAEKLLEEAKLALEK 722 (1746)
Q Consensus 702 ~S~Iy~~A~~Lqk~fek~l~e 722 (1746)
+|.+|.+|..|+++|...+++
T Consensus 86 ~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 86 GSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988765
No 59
>KOG1474|consensus
Probab=99.79 E-value=1.8e-19 Score=225.28 Aligned_cols=103 Identities=31% Similarity=0.431 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCccccccCCCCCC--CCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q psy11166 494 VVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKL--VPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVEN 571 (1746)
Q Consensus 494 ~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke--~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~N 571 (1746)
...+...|..||+.|+.+ ..+|||..|||+.. +||||+||++||||+||++||.++.|.++.+|.+||+|||.|
T Consensus 220 ~~~~lk~C~~iLk~l~~~----k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~N 295 (640)
T KOG1474|consen 220 TVELLKQCLSILKRLMKH----KHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDN 295 (640)
T ss_pred cHHHHHHHHHHHHHHHhc----cCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHH
Confidence 345566677788888776 56799999999975 999999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 572 STLYNGAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 572 C~~YN~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
|++||++|++||.+|..|+.+|+.+|...
T Consensus 296 cm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~ 324 (640)
T KOG1474|consen 296 CMTYNPEGSDVYAMAKKLQEVFEERWASM 324 (640)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999874
No 60
>smart00297 BROMO bromo domain.
Probab=99.79 E-value=2.9e-19 Score=175.29 Aligned_cols=101 Identities=36% Similarity=0.590 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcc
Q psy11166 495 VVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTL 574 (1746)
Q Consensus 495 ~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~ 574 (1746)
..+..+|..|++.+. .++.+++|+.||++..+||||.+|++||||++|++||+++.|.++.+|..||++||.||+.
T Consensus 6 ~~~~~~~~~i~~~~~----~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 6 KKLQSLLKAVLDKLD----SHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKT 81 (107)
T ss_pred HHHHHHHHHHHHHHH----hCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 345555555555554 4588999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhh
Q psy11166 575 YNGAKSILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 575 YN~~gS~I~k~A~~Lek~fee~lke 599 (1746)
||+++|.++.+|..|.+.|++.+++
T Consensus 82 ~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 82 YNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998865
No 61
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=3.7e-19 Score=176.85 Aligned_cols=99 Identities=25% Similarity=0.414 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 498 TSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 498 s~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
...++.|+..|++.+++ ++.++||+.+|++..+||||++|++||||++|++||.++.|.++.+|..||.|||.||+.|
T Consensus 3 ~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 3 EARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35578888888888765 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q psy11166 576 NGAKSILTDAARRMLTLCVEL 596 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~ 596 (1746)
|+++|.++.+|..|++.|+++
T Consensus 83 n~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999864
No 62
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=4e-19 Score=177.47 Aligned_cols=100 Identities=26% Similarity=0.403 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcc
Q psy11166 497 LTSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTL 574 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~ 574 (1746)
|...|..+++.|+++.++ ++.+.+|+.+|+++.+||||++|++||||+||++||++ |.++.+|..|+.|||.||+.
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 567788889999888765 46689999999999999999999999999999999998 99999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhh
Q psy11166 575 YNGAKSILTDAARRMLTLCVELLG 598 (1746)
Q Consensus 575 YN~~gS~I~k~A~~Lek~fee~lk 598 (1746)
||+++|+++.+|..|++.|.+++.
T Consensus 80 yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 80 YNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988763
No 63
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.78 E-value=6.3e-19 Score=176.14 Aligned_cols=96 Identities=28% Similarity=0.417 Sum_probs=88.1
Q ss_pred HHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhC---CCCCCHHHHHHHHHHHHHHhcccCCCCC
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQS---HKYHSRYEFLADIELILSNSVLYNGPGS 703 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s---~~YkS~~EF~~DV~LIf~NA~tYN~p~S 703 (1746)
+.+|+. .+..++.++||..||++ .+|+||++|++||||+||++||++ +.|+++++|..||+|||+||+.||+++|
T Consensus 9 c~~il~-~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 86 (109)
T cd05502 9 CERLLL-ELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDS 86 (109)
T ss_pred HHHHHH-HHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 344443 55667999999999999 899999999999999999999998 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy11166 704 QVTEKAEKLLEEAKLALEKYD 724 (1746)
Q Consensus 704 ~Iy~~A~~Lqk~fek~l~el~ 724 (1746)
.++.+|..|++.|++.+.++.
T Consensus 87 ~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 87 EVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999998764
No 64
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.77 E-value=7e-19 Score=175.70 Aligned_cols=98 Identities=29% Similarity=0.327 Sum_probs=87.4
Q ss_pred hhhhhHHHHHHHHhh-cCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy11166 622 ALSFIFDDIVNNKLK-NMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 700 (1746)
Q Consensus 622 aLS~IL~eIV~~kLk-~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~ 700 (1746)
.+..|+..|+..+.. ++..++||..+|++..+||||++|++||||++|++||.++.|+|+++|..|+.|||.||++||+
T Consensus 6 ~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~yn~ 85 (106)
T cd05525 6 VLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYG 85 (106)
T ss_pred HHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 355566666543332 4567899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy11166 701 PGSQVTEKAEKLLEEAKLA 719 (1746)
Q Consensus 701 p~S~Iy~~A~~Lqk~fek~ 719 (1746)
++|.++.+|..|+++|.+.
T Consensus 86 ~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 86 RKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred CCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999864
No 65
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.77 E-value=7.6e-19 Score=180.57 Aligned_cols=98 Identities=30% Similarity=0.473 Sum_probs=87.4
Q ss_pred HHHHHHHHHhccccCCCccccccCCCCC-CCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCC
Q psy11166 501 LEKILNEMRDMSQTEPNVKQFSFPVNAK-LVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAK 579 (1746)
Q Consensus 501 LeeIL~eL~s~~~~~~~S~pFl~PVd~k-e~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~g 579 (1746)
+-.++..++.. ..++.++||..||++. .+|+||++|++||||+||++||+++.|.++++|..||+|||.||++||+++
T Consensus 29 i~~~l~~l~~~-~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~ 107 (128)
T cd05529 29 LISGLDKLLLS-LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPN 107 (128)
T ss_pred HHHHHHHHHhc-ccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 33444444432 2568899999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhh
Q psy11166 580 SILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 580 S~I~k~A~~Lek~fee~lke 599 (1746)
|.++.+|..|++.|...+..
T Consensus 108 s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 108 SEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred CHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988753
No 66
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.77 E-value=7.2e-19 Score=175.01 Aligned_cols=98 Identities=28% Similarity=0.454 Sum_probs=86.9
Q ss_pred hhhhHHHHHHHHh-hcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy11166 623 LSFIFDDIVNNKL-KNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP 701 (1746)
Q Consensus 623 LS~IL~eIV~~kL-k~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p 701 (1746)
+..++..+...+- .+++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||.|||.||++||++
T Consensus 5 ~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN~~ 84 (105)
T cd05515 5 LWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEP 84 (105)
T ss_pred HHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4445555543322 267779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy11166 702 GSQVTEKAEKLLEEAKLAL 720 (1746)
Q Consensus 702 ~S~Iy~~A~~Lqk~fek~l 720 (1746)
+|.+|.+|..|+++|.+..
T Consensus 85 ~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 85 DSQIYKDALTLQKVLLETK 103 (105)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 67
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.77 E-value=6.5e-19 Score=173.92 Aligned_cols=84 Identities=36% Similarity=0.561 Sum_probs=80.2
Q ss_pred cCCccccccccCCcc--ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHH
Q psy11166 637 NMADAWIFIKPVNKK--FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLE 714 (1746)
Q Consensus 637 ~~~~S~PF~~PVd~k--~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk 714 (1746)
.++.++||..||++. .+||||++|++||||++|++||.++.|+++++|..|++|||.||+.||+++|.++.+|..|++
T Consensus 17 ~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~~s~~~~~a~~l~~ 96 (102)
T cd05499 17 HSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVYMMGHQLEE 96 (102)
T ss_pred CCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 367799999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy11166 715 EAKLAL 720 (1746)
Q Consensus 715 ~fek~l 720 (1746)
.|++.+
T Consensus 97 ~fe~~~ 102 (102)
T cd05499 97 VFNDKW 102 (102)
T ss_pred HHHHhC
Confidence 998753
No 68
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.76 E-value=1.2e-18 Score=170.85 Aligned_cols=93 Identities=34% Similarity=0.588 Sum_probs=85.4
Q ss_pred HHHHHHHHhhcCCccccccccCCcc--ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCH
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKK--FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQ 704 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k--~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~ 704 (1746)
+..|+ ..+..++.+++|..||++. .+|+||++|++||||+||++||+++.|.++++|..|++|||.||++||+++|.
T Consensus 5 c~~il-~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~ 83 (99)
T cd05506 5 CGTLL-RKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGND 83 (99)
T ss_pred HHHHH-HHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 44555 3666788999999999987 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11166 705 VTEKAEKLLEEAKLAL 720 (1746)
Q Consensus 705 Iy~~A~~Lqk~fek~l 720 (1746)
++.+|..|++.|++.+
T Consensus 84 i~~~a~~l~~~fe~~w 99 (99)
T cd05506 84 VHTMAKELLKIFETRW 99 (99)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998753
No 69
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.76 E-value=1.1e-18 Score=173.34 Aligned_cols=97 Identities=28% Similarity=0.462 Sum_probs=86.3
Q ss_pred hhhhhHHHHHHHHh-hcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy11166 622 ALSFIFDDIVNNKL-KNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 700 (1746)
Q Consensus 622 aLS~IL~eIV~~kL-k~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~ 700 (1746)
.+..++..|+..+- .+++.+++|..+|+++.+||||++|++||||+||++||.++.|.++.+|..||+|||.||++||+
T Consensus 4 ~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05517 4 ILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNE 83 (103)
T ss_pred HHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34555555554333 35667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy11166 701 PGSQVTEKAEKLLEEAKL 718 (1746)
Q Consensus 701 p~S~Iy~~A~~Lqk~fek 718 (1746)
++|.++.+|..|+++|..
T Consensus 84 ~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 84 PGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 70
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.76 E-value=1.2e-18 Score=172.53 Aligned_cols=92 Identities=33% Similarity=0.532 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcCCccccccccCCcc--ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCH
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKK--FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQ 704 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k--~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~ 704 (1746)
+.+++ ..|+.++.++||..||++. .+|+||++|++||||++|++||.++.|.++.+|..||+|||+||+.||+++|.
T Consensus 9 ~~~ii-~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~ 87 (103)
T cd05500 9 LLSSI-RSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHP 87 (103)
T ss_pred HHHHH-HHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 44555 4788899999999999976 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy11166 705 VTEKAEKLLEEAKLA 719 (1746)
Q Consensus 705 Iy~~A~~Lqk~fek~ 719 (1746)
++.+|..|++.|++.
T Consensus 88 ~~~~A~~l~~~fe~~ 102 (103)
T cd05500 88 VSQMGKRLQAAFEKH 102 (103)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 71
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.76 E-value=1.2e-18 Score=173.12 Aligned_cols=83 Identities=30% Similarity=0.460 Sum_probs=79.6
Q ss_pred cCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q psy11166 637 NMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEA 716 (1746)
Q Consensus 637 ~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~f 716 (1746)
+++.++||..||++..+||||++|++||||+||++||.++.|+++.+|..||+|||.||++||+++|.+|.+|..|+++|
T Consensus 20 g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f 99 (103)
T cd05520 20 GQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLM 99 (103)
T ss_pred CCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q psy11166 717 KLA 719 (1746)
Q Consensus 717 ek~ 719 (1746)
++.
T Consensus 100 ~~~ 102 (103)
T cd05520 100 QAK 102 (103)
T ss_pred HHh
Confidence 763
No 72
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.76 E-value=2.3e-18 Score=171.00 Aligned_cols=94 Identities=19% Similarity=0.326 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHH
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVT 706 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy 706 (1746)
++.|++ .|..++.+++|..+ +..+||||++|++||||+||++||.++.|+|+++|.+||+|||.||++||+++ .++
T Consensus 7 ce~il~-~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~ 82 (102)
T cd05501 7 CEFLLL-KVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFG 82 (102)
T ss_pred HHHHHH-HHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHH
Confidence 455554 67788899999663 45899999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11166 707 EKAEKLLEEAKLALEKYD 724 (1746)
Q Consensus 707 ~~A~~Lqk~fek~l~el~ 724 (1746)
.+|..|++.|++.++++.
T Consensus 83 ~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 83 QVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999988754
No 73
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.76 E-value=1.7e-18 Score=172.01 Aligned_cols=96 Identities=29% Similarity=0.450 Sum_probs=86.1
Q ss_pred hhhhHHHHHHHH-hhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy11166 623 LSFIFDDIVNNK-LKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP 701 (1746)
Q Consensus 623 LS~IL~eIV~~k-Lk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p 701 (1746)
+..++..++..+ ..+++.+.+|..+|++..+||||++|++||||+||++||.++.|.|+++|..||+|||.||+.||++
T Consensus 5 ~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 84 (103)
T cd05518 5 MLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEE 84 (103)
T ss_pred HHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 555666555432 3466778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy11166 702 GSQVTEKAEKLLEEAKL 718 (1746)
Q Consensus 702 ~S~Iy~~A~~Lqk~fek 718 (1746)
+|.+|.+|..|+++|..
T Consensus 85 ~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 85 GSQVYEDANILEKVLKE 101 (103)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999998875
No 74
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.75 E-value=2.1e-18 Score=170.10 Aligned_cols=92 Identities=37% Similarity=0.564 Sum_probs=82.9
Q ss_pred HHHHHHHhhcC---CccccccccCCcc--ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy11166 628 DDIVNNKLKNM---ADAWIFIKPVNKK--FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPG 702 (1746)
Q Consensus 628 ~eIV~~kLk~~---~~S~PF~~PVd~k--~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~ 702 (1746)
.+|+. .|..+ +.++||..||++. .+|+||++|++||||++|++||.++.|+|+++|..||+|||+||+.||+++
T Consensus 6 ~~il~-~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 84 (102)
T cd05498 6 SGILK-ELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPPD 84 (102)
T ss_pred HHHHH-HHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34443 44444 7899999999987 499999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy11166 703 SQVTEKAEKLLEEAKLAL 720 (1746)
Q Consensus 703 S~Iy~~A~~Lqk~fek~l 720 (1746)
|.++.+|..|++.|++.+
T Consensus 85 s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 85 HPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998753
No 75
>smart00297 BROMO bromo domain.
Probab=99.75 E-value=3.4e-18 Score=167.73 Aligned_cols=101 Identities=41% Similarity=0.667 Sum_probs=94.1
Q ss_pred HhhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy11166 621 VALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 700 (1746)
Q Consensus 621 ~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~ 700 (1746)
..+..++..|+. .+..++.+++|..||++..+|+||++|++||||++|++||+++.|.|+++|..||++||.||+.||+
T Consensus 6 ~~~~~~~~~i~~-~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~ 84 (107)
T smart00297 6 KKLQSLLKAVLD-KLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNG 84 (107)
T ss_pred HHHHHHHHHHHH-HHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 456777778775 6677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q psy11166 701 PGSQVTEKAEKLLEEAKLALEK 722 (1746)
Q Consensus 701 p~S~Iy~~A~~Lqk~fek~l~e 722 (1746)
++|.++..|..|++.|.+.+++
T Consensus 85 ~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 85 PDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998875
No 76
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.75 E-value=3.2e-18 Score=172.66 Aligned_cols=87 Identities=29% Similarity=0.360 Sum_probs=82.5
Q ss_pred CCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q psy11166 638 MADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAK 717 (1746)
Q Consensus 638 ~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fe 717 (1746)
+..+.+|..+|++..+||||++|++||||+||++||.++.|+|+++|..||+|||.||++||+++|.+|.+|..|+++|.
T Consensus 23 ~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~ 102 (113)
T cd05524 23 RILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLWELFL 102 (113)
T ss_pred CchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy11166 718 LALEKYD 724 (1746)
Q Consensus 718 k~l~el~ 724 (1746)
+.+.++.
T Consensus 103 ~~~~~~~ 109 (113)
T cd05524 103 SARNEVL 109 (113)
T ss_pred HHHHHhh
Confidence 9887764
No 77
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=3.7e-18 Score=169.14 Aligned_cols=98 Identities=30% Similarity=0.513 Sum_probs=86.1
Q ss_pred hhhhhHHHHHHHHh-hcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy11166 622 ALSFIFDDIVNNKL-KNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 700 (1746)
Q Consensus 622 aLS~IL~eIV~~kL-k~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~ 700 (1746)
++..|+..+...+- .+++.+++|..||++..+||||++|++||||++|++||+++.|.|+.+|..||+|||.||++||+
T Consensus 4 ~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~ 83 (103)
T cd05519 4 AMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQ 83 (103)
T ss_pred HHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34555555543221 25667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy11166 701 PGSQVTEKAEKLLEEAKLA 719 (1746)
Q Consensus 701 p~S~Iy~~A~~Lqk~fek~ 719 (1746)
++|.++.+|..|++.|...
T Consensus 84 ~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 84 EGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 78
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.74 E-value=6.2e-18 Score=173.86 Aligned_cols=85 Identities=34% Similarity=0.518 Sum_probs=82.8
Q ss_pred cCCccccccccCCcc-ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Q psy11166 637 NMADAWIFIKPVNKK-FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEE 715 (1746)
Q Consensus 637 ~~~~S~PF~~PVd~k-~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~ 715 (1746)
.++.++||..||++. .+|+||++|++||||+||++||.++.|+++++|..||+|||.||++||+++|.++..|..|++.
T Consensus 41 ~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~ 120 (128)
T cd05529 41 QLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDW 120 (128)
T ss_pred cCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 899999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy11166 716 AKLALE 721 (1746)
Q Consensus 716 fek~l~ 721 (1746)
|..++.
T Consensus 121 ~~~~l~ 126 (128)
T cd05529 121 LLRILS 126 (128)
T ss_pred HHHHhc
Confidence 988764
No 79
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=99.74 E-value=2.9e-18 Score=152.08 Aligned_cols=53 Identities=45% Similarity=0.766 Sum_probs=51.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhccCccchhccCChHHHHHHHHHHhC
Q psy11166 1227 LIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGN 1279 (1746)
Q Consensus 1227 lIVqan~L~~eID~EI~~ih~~lRe~Ys~rFPELesLV~~p~~Y~r~V~~igN 1279 (1746)
|||+||+++++||+||+.+|+|+|+||++|||||++||+||.+|+++|+.|||
T Consensus 1 ~Ii~~~~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~~i~n 53 (53)
T PF08060_consen 1 LIIQANELLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVKIIGN 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHHHTTS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999997
No 80
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.72 E-value=1.3e-17 Score=167.53 Aligned_cols=100 Identities=27% Similarity=0.367 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhccccCCCccccccCCCC-----CCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q psy11166 499 SILEKILNEMRDMSQTEPNVKQFSFPVNA-----KLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 499 ~~LeeIL~eL~s~~~~~~~S~pFl~PVd~-----ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
-+|..++..+++.. |-+.||..||.+ ..+||||.+|++||||+||++||+++.|+++++|.+||+|||+||.
T Consensus 3 ~~L~f~~~~~k~~l---p~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~ 79 (109)
T cd05492 3 CLLKFIVSRMKSWL---PPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTA 79 (109)
T ss_pred hhHHHHHHHHHhcC---cccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 45677777777743 557899999952 2499999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhhhhH
Q psy11166 574 LYNGAKSILTDAARRMLTLCVELLGKKE 601 (1746)
Q Consensus 574 ~YN~~gS~I~k~A~~Lek~fee~lke~E 601 (1746)
.||+++|.++.+|..|.+.+...+.|.+
T Consensus 80 ~yNg~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 80 IFHGADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888776643
No 81
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.72 E-value=1.5e-17 Score=157.79 Aligned_cols=97 Identities=36% Similarity=0.625 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCC
Q psy11166 499 SILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGA 578 (1746)
Q Consensus 499 ~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~ 578 (1746)
..+..++..+.... .+.+.+|..||++..+|+||.+|++||||.+|++||.++.|.++.+|.+||++||.||+.||+.
T Consensus 3 ~~~~~i~~~l~~~~--~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~ 80 (99)
T cd04369 3 KKLRSLLDALKKLK--RDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGP 80 (99)
T ss_pred HHHHHHHHHHHhhc--ccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34556666666543 3679999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHh
Q psy11166 579 KSILTDAARRMLTLCVELL 597 (1746)
Q Consensus 579 gS~I~k~A~~Lek~fee~l 597 (1746)
+|.++.+|..|+..|++.+
T Consensus 81 ~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 81 GSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 82
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.71 E-value=2.6e-17 Score=163.79 Aligned_cols=98 Identities=30% Similarity=0.405 Sum_probs=86.7
Q ss_pred hhhhhHHHHHHHHh-hcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy11166 622 ALSFIFDDIVNNKL-KNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 700 (1746)
Q Consensus 622 aLS~IL~eIV~~kL-k~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~ 700 (1746)
.+..|+..|..-+- .+++.++||..+|++..+||||++|++||||++|++||..+.|.++.+|..|+.|||.||+.||+
T Consensus 5 ~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~ 84 (104)
T cd05522 5 RIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNE 84 (104)
T ss_pred HHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35566665543222 24678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy11166 701 PGSQVTEKAEKLLEEAKLA 719 (1746)
Q Consensus 701 p~S~Iy~~A~~Lqk~fek~ 719 (1746)
++|.+|.+|..|++.|..+
T Consensus 85 ~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 85 NDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999863
No 83
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.70 E-value=2.4e-17 Score=155.23 Aligned_cols=84 Identities=45% Similarity=0.679 Sum_probs=76.1
Q ss_pred HHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q psy11166 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKS 580 (1746)
Q Consensus 501 LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS 580 (1746)
|..|+..|+.+ +.+++|..||++..+|+|+++|++||||++|++||.+|.|.++.+|..||++||.||+.||+++|
T Consensus 1 C~~il~~l~~~----~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s 76 (84)
T PF00439_consen 1 CREILEELMKH----PISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDS 76 (84)
T ss_dssp HHHHHHHHHTS----TTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred CHHHHHHHHcC----CCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcC
Confidence 45666766665 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH
Q psy11166 581 ILTDAARR 588 (1746)
Q Consensus 581 ~I~k~A~~ 588 (1746)
.++.+|++
T Consensus 77 ~~~~~A~~ 84 (84)
T PF00439_consen 77 PIYKAAEK 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999974
No 84
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=7.9e-17 Score=161.88 Aligned_cols=98 Identities=24% Similarity=0.319 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhhc-CCccccccccCCc---c--ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Q psy11166 625 FIFDDIVNNKLKN-MADAWIFIKPVNK---K--FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLY 698 (1746)
Q Consensus 625 ~IL~eIV~~kLk~-~~~S~PF~~PVd~---k--~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tY 698 (1746)
.+|.-+| ..++. .+.++||..||.+ . .+|+||++|++||||+||++||+++.|+++++|..||.|||+||..|
T Consensus 3 ~~L~f~~-~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~y 81 (109)
T cd05492 3 CLLKFIV-SRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIF 81 (109)
T ss_pred hhHHHHH-HHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4555556 46666 7778999999962 2 38999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11166 699 NGPGSQVTEKAEKLLEEAKLALEKY 723 (1746)
Q Consensus 699 N~p~S~Iy~~A~~Lqk~fek~l~el 723 (1746)
|+++|.++..|..|.+-+..-+.|+
T Consensus 82 Ng~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 82 HGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877766655
No 85
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=6.1e-17 Score=161.88 Aligned_cols=82 Identities=28% Similarity=0.388 Sum_probs=77.7
Q ss_pred cCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q psy11166 637 NMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEA 716 (1746)
Q Consensus 637 ~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~f 716 (1746)
+++.+.+|..+++++.+||||++|++||||+||++||.+ |+++++|..|+.|||.||+.||+++|.+|.+|..|+++|
T Consensus 21 g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~le~~~ 98 (106)
T cd05521 21 GIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALILEKYI 98 (106)
T ss_pred CCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 455578999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy11166 717 KLAL 720 (1746)
Q Consensus 717 ek~l 720 (1746)
...+
T Consensus 99 ~~~~ 102 (106)
T cd05521 99 NDVI 102 (106)
T ss_pred HHhh
Confidence 8765
No 86
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.65 E-value=2.2e-16 Score=149.78 Aligned_cols=86 Identities=43% Similarity=0.623 Sum_probs=81.4
Q ss_pred HhhcC--CccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHH
Q psy11166 634 KLKNM--ADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEK 711 (1746)
Q Consensus 634 kLk~~--~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~ 711 (1746)
.+..+ +.+++|..||++..+|+||++|++||||++|++||.++.|.++.+|..||++||.||+.||+++|.++.+|..
T Consensus 11 ~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~~~a~~ 90 (99)
T cd04369 11 ALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKK 90 (99)
T ss_pred HHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 45555 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy11166 712 LLEEAKLA 719 (1746)
Q Consensus 712 Lqk~fek~ 719 (1746)
|+..|...
T Consensus 91 l~~~~~~~ 98 (99)
T cd04369 91 LEKLFEKL 98 (99)
T ss_pred HHHHHHHh
Confidence 99988764
No 87
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.65 E-value=2.6e-16 Score=148.30 Aligned_cols=83 Identities=42% Similarity=0.641 Sum_probs=75.8
Q ss_pred HHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHH
Q psy11166 628 DDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTE 707 (1746)
Q Consensus 628 ~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~ 707 (1746)
.+++ +.+..++.+++|..||+...+|+|+++|++||||++|++||.++.|.++++|..||++||.||+.||+++|.+|.
T Consensus 2 ~~il-~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 2 REIL-EELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHH-HHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHH-HHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3445 477888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q psy11166 708 KAEK 711 (1746)
Q Consensus 708 ~A~~ 711 (1746)
+|.+
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9974
No 88
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.64 E-value=6.6e-16 Score=155.33 Aligned_cols=102 Identities=13% Similarity=0.236 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q psy11166 496 VLTSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
.++.++..|+..|+++.++ +..+.||++.|+ ..|+||.+|++||||.+|++||++|.|+++++|.+||.+||+||+
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr 80 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH
Confidence 4567888899999999865 456999999998 557889999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhhh
Q psy11166 574 LYNGAKSILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 574 ~YN~~gS~I~k~A~~Lek~fee~lke 599 (1746)
+||.++|.+|.+|..|+++|.+.-.+
T Consensus 81 ~yN~~~S~iy~dA~eLq~~f~~~rd~ 106 (110)
T cd05526 81 RLSRTDSEIYEDAVELQQFFIKIRDE 106 (110)
T ss_pred HhCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876543
No 89
>KOG0008|consensus
Probab=99.58 E-value=5.8e-16 Score=196.62 Aligned_cols=174 Identities=40% Similarity=0.551 Sum_probs=153.9
Q ss_pred CcHHHHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q psy11166 492 DPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVEN 571 (1746)
Q Consensus 492 dp~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~N 571 (1746)
+..+.+ .++..++.++++. +.+|||+.||+++.+|+||.+|++||||.+|.+++..++|.++.+|.+||++|+.|
T Consensus 1379 ~d~v~~-~~~d~~vs~~~~i----pes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n 1453 (1563)
T KOG0008|consen 1379 DDQVAF-FILDNIVSQMKEI----PESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVN 1453 (1563)
T ss_pred cchhhH-hhhhhHHHHHHhc----chhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhccc
Confidence 344555 7788888887666 78999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCCCCCCchhHhhhhhHHHHHHHHhhcCCccccccccCCcc
Q psy11166 572 STLYNGAKSILTDAARRMLTLCVELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKK 651 (1746)
Q Consensus 572 C~~YN~~gS~I~k~A~~Lek~fee~lke~Ee~l~rLEkaInPlldDnDq~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k 651 (1746)
|..||+..+.+..-|+++.+++...+.+..+++-+|++. .+..|..||...
T Consensus 1454 ~~~~ng~e~~y~~k~~k~~ev~~~~~~e~~~~~~~le~~-----------------------------is~~~~~a~~~~ 1504 (1563)
T KOG0008|consen 1454 SVEYNGAESAYTKKARKIGEVGLANLLEYIEHLLQLEEN-----------------------------ISTLFEAAVEKA 1504 (1563)
T ss_pred ceeecCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------HHHHHHHHHHhh
Confidence 999999999999999999999988887776666555542 134467788888
Q ss_pred ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy11166 652 FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP 701 (1746)
Q Consensus 652 ~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p 701 (1746)
++|+|-+++. ||+.||..++..-.|.+-.+|..|+..+=.|+-.|-++
T Consensus 1505 ea~~~dd~~~--~d~~t~~d~~~d~e~~~~~~~~~~~~q~~~n~~~~~g~ 1552 (1563)
T KOG0008|consen 1505 EAPDYDDIVP--GDLSTIPDDVRDTEYSDSMQRDADVWQIKSNAHVYDGR 1552 (1563)
T ss_pred hcCCccccCC--CCCCCCcchhhccccchhhhcccceeeeccccccccCC
Confidence 9999999988 99999999999999999999999999999999999443
No 90
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.52 E-value=2.9e-14 Score=143.59 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=77.6
Q ss_pred CCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q psy11166 638 MADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAK 717 (1746)
Q Consensus 638 ~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fe 717 (1746)
...|.||.++++ ..|+||.+|++||||.+|++||.+|.|+++++|..||.+||.||++||.++|.+|.+|..|+.+|.
T Consensus 24 r~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq~~f~ 101 (110)
T cd05526 24 RCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQQFFI 101 (110)
T ss_pred CCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHH
Confidence 345789999998 457889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy11166 718 LALEKY 723 (1746)
Q Consensus 718 k~l~el 723 (1746)
...+++
T Consensus 102 ~~rd~~ 107 (110)
T cd05526 102 KIRDEL 107 (110)
T ss_pred HHHHHH
Confidence 877654
No 91
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.52 E-value=1.5e-14 Score=171.44 Aligned_cols=197 Identities=22% Similarity=0.246 Sum_probs=131.7
Q ss_pred CCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHhh----h-hHH
Q psy11166 528 KLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLG----K-KEE 602 (1746)
Q Consensus 528 ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek~fee~lk----e-~Ee 602 (1746)
...+++.......|....+..... ..+.. .....+-.+.+..+..|++..............++..... + ...
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 120 (371)
T COG5076 43 EGSKNLFQKQLKRMPKEYITSIVD-DREPG-SMANVNDDLENVGGITYSPFEKNRPESLRFDEIVFLAIESVTPESGLGS 120 (371)
T ss_pred ccccccchhhhcccchhhhhhhhc-ccccc-cccccCcchhcccCcccCCccccccccccccceeccccccccccccccc
Confidence 446777777788888888888887 55555 6666666666667766766443222211111111111110 0 000
Q ss_pred HHHH-h----hhhcCCCCCCchh-HhhhhhHHHHHH-HHhhcCCccccccccCCccccccccccccCccChHHHHHHHhC
Q psy11166 603 LLMR-L----EKAINPLLDDNDQ-VALSFIFDDIVN-NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQS 675 (1746)
Q Consensus 603 ~l~r-L----EkaInPlldDnDq-~aLS~IL~eIV~-~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s 675 (1746)
.... . .+.-.|...+... .....+...... ..-.....+++|..+|++..+|+||.+|+.||||++|+++|..
T Consensus 121 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~ 200 (371)
T COG5076 121 LLMAHLKTSVKKRKTPKIEDELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKN 200 (371)
T ss_pred cccccchHHHHhhcCCcccchhHHHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHh
Confidence 0000 0 1111222111111 112222222221 1224567789999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 676 HKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDH 726 (1746)
Q Consensus 676 ~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fek~l~el~~~ 726 (1746)
+.|+++++|..|+.|||.||.+||.++|.+|.+|..|++.|...+.+++..
T Consensus 201 ~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 201 GRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred hhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999887665
No 92
>KOG1245|consensus
Probab=99.48 E-value=2.3e-14 Score=189.88 Aligned_cols=94 Identities=38% Similarity=0.543 Sum_probs=88.3
Q ss_pred HHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q psy11166 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKS 580 (1746)
Q Consensus 501 LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS 580 (1746)
|+.|+.+|..+ ..+|||+.||+++.+||||+||++||||+||+.|+..|.|.+.++|..||+|||.||.+||.+ |
T Consensus 1306 ~e~il~e~~~~----~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s 1380 (1404)
T KOG1245|consen 1306 CEDILHELVVH----KAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-S 1380 (1404)
T ss_pred HHHHHHHHHHh----hhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-h
Confidence 67788887776 679999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q psy11166 581 ILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 581 ~I~k~A~~Lek~fee~lke 599 (1746)
.++++...|.++|.+.|..
T Consensus 1381 ~i~~ag~~l~~ff~~~~~~ 1399 (1404)
T KOG1245|consen 1381 EIGRAGTCLRRFFHKRWRK 1399 (1404)
T ss_pred hhhhhcchHHHHHHHHHHh
Confidence 9999999999999986643
No 93
>KOG1245|consensus
Probab=99.42 E-value=1.3e-13 Score=183.02 Aligned_cols=95 Identities=37% Similarity=0.545 Sum_probs=87.3
Q ss_pred HHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHH
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVT 706 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy 706 (1746)
|..|+ ..+..|..+|||..||+++.+||||+||++||||+||+.|+..+.|.+.++|..||+|||.||.+||.+ |.++
T Consensus 1306 ~e~il-~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~ 1383 (1404)
T KOG1245|consen 1306 CEDIL-HELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIG 1383 (1404)
T ss_pred HHHHH-HHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhh
Confidence 34444 467779999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11166 707 EKAEKLLEEAKLALEKY 723 (1746)
Q Consensus 707 ~~A~~Lqk~fek~l~el 723 (1746)
.....|.++|++.+...
T Consensus 1384 ~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1384 RAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhcchHHHHHHHHHHhh
Confidence 99999999999866543
No 94
>KOG1828|consensus
Probab=99.41 E-value=1.1e-13 Score=160.57 Aligned_cols=196 Identities=21% Similarity=0.304 Sum_probs=156.7
Q ss_pred ccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHh
Q psy11166 518 VKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELL 597 (1746)
Q Consensus 518 S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek~fee~l 597 (1746)
-.-|-.||...-.|+|-++|+.|||+.|++.|++.++|.+..+|..|.++++.|+..||..++.++..|++|..+....+
T Consensus 37 ~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~~~~ 116 (418)
T KOG1828|consen 37 KQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRLGMT 116 (418)
T ss_pred hhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhcchh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999988876666
Q ss_pred hhhHHHH--------HHhhhhcCCC--------------------CCCch--h-----------Hhh-------------
Q psy11166 598 GKKEELL--------MRLEKAINPL--------------------LDDND--Q-----------VAL------------- 623 (1746)
Q Consensus 598 ke~Ee~l--------~rLEkaInPl--------------------ldDnD--q-----------~aL------------- 623 (1746)
.++-..+ .++...+.+. ..+.+ + ..+
T Consensus 117 qe~~l~f~~~slg~y~~~rn~~~~v~~la~~~~sr~~~~d~~a~~s~ee~~l~v~~~e~~~~~~~~fs~k~~e~~~e~~~ 196 (418)
T KOG1828|consen 117 QERLLSFVNTSLGFYEDKRNKVTPVLYLAYGPYSRYHYDDTFANISKEESDLIVSTYEEDSDLPSDFSHKFLETCQERVV 196 (418)
T ss_pred hHHHHHhhhcccchhhhcccccCceeeeccCCccchhhhhhcCCCcccccccccccccccccccccccccccccCccceE
Confidence 5432110 0111111110 00000 0 000
Q ss_pred ---------h---hhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHH
Q psy11166 624 ---------S---FIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELI 691 (1746)
Q Consensus 624 ---------S---~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LI 691 (1746)
. ..+.....+++...+....|..+|....+|.|.-+|++|+|++|++.|.....|.| -+|..|+.||
T Consensus 197 ~lgds~g~lqtg~~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~ 275 (418)
T KOG1828|consen 197 TLGDSVGDLQTGGQQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLI 275 (418)
T ss_pred ehhhhhhhhccccHHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchh
Confidence 0 12233333566666667789999999999999999999999999999999999999 9999999999
Q ss_pred HHHhcccCCCCCHHHHHHHHHHH
Q psy11166 692 LSNSVLYNGPGSQVTEKAEKLLE 714 (1746)
Q Consensus 692 f~NA~tYN~p~S~Iy~~A~~Lqk 714 (1746)
+.||++||.++..+|..|+.+..
T Consensus 276 ~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 276 ALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred hHHHHhcCCcchHHHHHHHhhhh
Confidence 99999999999999999998876
No 95
>KOG1827|consensus
Probab=99.26 E-value=3e-12 Score=157.66 Aligned_cols=226 Identities=18% Similarity=0.238 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHhccccC--CCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q psy11166 496 VLTSILEKILNEMRDMSQTE--PNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~--~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
.+...+..++..++++.+.. .....|.+.++++..|+||.+|.+||+|+.|++|+..+.|.+.+.|..|+.||+.||+
T Consensus 52 ~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~ 131 (629)
T KOG1827|consen 52 PLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENAR 131 (629)
T ss_pred HHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 44566777777777776653 5689999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhhh-hHHHHHHh-hhh-----cCCCCCCc-hhHhhhhhHHHHHH-----HHhh-cCC
Q psy11166 574 LYNGAKSILTDAARRMLTLCVELLGK-KEELLMRL-EKA-----INPLLDDN-DQVALSFIFDDIVN-----NKLK-NMA 639 (1746)
Q Consensus 574 ~YN~~gS~I~k~A~~Lek~fee~lke-~Ee~l~rL-Eka-----InPlldDn-Dq~aLS~IL~eIV~-----~kLk-~~~ 639 (1746)
.||.++|.++++|..|+..|.....+ ++-.+... ... ..+...++ .-....++....|. ..+. ...
T Consensus 132 ~~n~~ds~~~~~s~~l~~~~~~~~~~~~d~e~s~~~~~~l~~~~l~~~~~~~~~i~~~~~~~gd~vlv~~~~d~~~p~v~ 211 (629)
T KOG1827|consen 132 LYNRPDSLIYKDSGELEKYFISLEDEKKDGELSMESNEELKAGGLHYHELGPVEIDGTKYIVGDYVLVQNPADNLKPIVA 211 (629)
T ss_pred HhcCcchhhhhhhhhhhcchhhhhccccchhhccccccccccCCCCcccCCCccccCcccccCceeeecCcccccCCcee
Confidence 99999999999999999999876542 11111100 011 11111110 00011122111110 0011 111
Q ss_pred ccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHH
Q psy11166 640 DAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLA 719 (1746)
Q Consensus 640 ~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fek~ 719 (1746)
....|...++.+.+|+||.+++-||.+....+++..++|.....|..|....|.|+..|+.+...++.++..|.+....+
T Consensus 212 ~Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~dv~l 291 (629)
T KOG1827|consen 212 QIERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEEDVFL 291 (629)
T ss_pred eecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccceee
Confidence 14568888899999999999999999999999999999999999999999999999999999999999998887665554
Q ss_pred HH
Q psy11166 720 LE 721 (1746)
Q Consensus 720 l~ 721 (1746)
++
T Consensus 292 ce 293 (629)
T KOG1827|consen 292 CE 293 (629)
T ss_pred EE
Confidence 44
No 96
>KOG1472|consensus
Probab=99.20 E-value=9e-12 Score=155.44 Aligned_cols=101 Identities=32% Similarity=0.574 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
.+...+..++..|.++ ..+|||.+||+++++||||.+|++||||.||+.+|.++.|..+..|++|+..+|.||+.|
T Consensus 606 ~~~s~~~~il~~l~~h----~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~y 681 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNH----GDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMY 681 (720)
T ss_pred hhhHHHHhHHhhhhcC----CccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhcc
Confidence 3445566666666554 789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 576 NGAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
|+.++..++.|..|...|...+.+.
T Consensus 682 n~~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 682 NGSDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred CCccchheecccchhhhhcchhhhh
Confidence 9999999999999999998777654
No 97
>KOG1827|consensus
Probab=99.10 E-value=1e-10 Score=144.46 Aligned_cols=154 Identities=22% Similarity=0.267 Sum_probs=122.6
Q ss_pred HHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCCCCCCchhHhhhhhHHHHHHHHh-hcCCc
Q psy11166 562 LADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIVNNKL-KNMAD 640 (1746)
Q Consensus 562 ~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek~fee~lke~Ee~l~rLEkaInPlldDnDq~aLS~IL~eIV~~kL-k~~~~ 640 (1746)
++|+.||.+|+..||.+.+.+++.+..+++...... ....+.=.|..+.-....+..+|..++..+. .....
T Consensus 3 ~~df~l~~e~~~~~~~p~s~p~k~~~~~~~~~~~~k-------~~~~~~d~p~i~~~~~~~f~~il~~~~~~~d~~gk~~ 75 (629)
T KOG1827|consen 3 VADFPLMTENACSDNEPDSLPGKDAKNLQKTPLHDK-------TLMGRDDSPVIDPPLIPKFKTILASLLDLKDDEGKQL 75 (629)
T ss_pred hhhhhHHhhccccccCCccccccCcchhhhchhhhh-------cccCCCCccccChHHHHHHHHHHHHHHhhccccCccc
Confidence 579999999999999999999999998887654433 1112222222233333345555555554333 23344
Q ss_pred cccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Q psy11166 641 AWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLAL 720 (1746)
Q Consensus 641 S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fek~l 720 (1746)
...|.+.+++++.|+||.+|.+||+|..|++|+..++|++++.|..|+.||++||+.||.++|.+|+++..|+..|....
T Consensus 76 ~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 76 FDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred chhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred HH
Q psy11166 721 EK 722 (1746)
Q Consensus 721 ~e 722 (1746)
.+
T Consensus 156 ~~ 157 (629)
T KOG1827|consen 156 DE 157 (629)
T ss_pred cc
Confidence 54
No 98
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=98.92 E-value=6.1e-10 Score=134.16 Aligned_cols=89 Identities=28% Similarity=0.322 Sum_probs=69.1
Q ss_pred cchhhhccCCCCCCCCCC------ccchhhcchhHHHHHHH-hhccceeehhccccCCCCCCcccHHHHHHHHHHHh---
Q psy11166 20 GGEEMAADGMETEPDDVK------PDVHKIIEQDIKGVRCR-LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLD--- 89 (1746)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~a~~-vaaK~~LAARvD~~~~~~~G~~G~~~reei~~ki~--- 89 (1746)
|.++.-..|+.|.....+ -++.+..|+++|.+++| |||||+||||||++.+ +.+|..||++|+++|+
T Consensus 300 GAeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgkiaR~lA~K~alAARiD~~~~---~~~G~~l~~~l~~ri~~i~ 376 (414)
T PRK14552 300 GAEKALFRHLRTGAKPPKHGVIFQYPAIHGSPWWQRGKIARALAAKLAIAARVDYFSG---RYIGDELKEELNKRIEEIK 376 (414)
T ss_pred chhhHHHHHhccCCCCCCceEEEcCHHHhhCCHHHHHHHHHHHHHHHHHHHHhhhcCC---ccchHHHHHHHHHHHHHHH
Confidence 556665667777543221 14556899999988888 8999999999999964 4789999999999999
Q ss_pred -hhcCCCCCCCCCCCCCCCCCCc
Q psy11166 90 -KLTEPPPVKFVKPLPKPIEAGR 111 (1746)
Q Consensus 90 -K~~EPPp~k~~KaLP~P~d~~k 111 (1746)
||+||||.+..|+=|.+...++
T Consensus 377 ~k~~~Pp~~k~~~~~~~~~~~~~ 399 (414)
T PRK14552 377 EKYPKPPKKKREEKKPQKRKKKK 399 (414)
T ss_pred HhcCCCCCCCcCCCCCCCccccc
Confidence 7899999999988555544433
No 99
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.1e-09 Score=129.68 Aligned_cols=92 Identities=41% Similarity=0.529 Sum_probs=83.7
Q ss_pred cchhhcchhHHHHHHH-hhccceeehhccccCCCCCCcccHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCccCccch
Q psy11166 39 DVHKIIEQDIKGVRCR-LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKPIEAGRKKRGGK 117 (1746)
Q Consensus 39 ~~~~~~~~d~~~~a~~-vaaK~~LAARvD~~~~~~~G~~G~~~reei~~ki~K~~EPPp~k~~KaLP~P~d~~kkkRGGr 117 (1746)
++.+..|.+-|.++.| +|||||||||||++++.+++ ..||++|+++|+++.++||.+.+|++|.| + +++|+||
T Consensus 303 p~I~~sp~~~rGkiAR~LAaK~AIAARiD~~s~~~~~---~~lr~ele~Ri~~i~~~~~~pp~k~~~~~-~--~~~~~~r 376 (395)
T COG1498 303 PLIQKSPPWQRGKIARALAAKLAIAARIDAFSGEPDG---ISLREELEKRIEKLKEKPPKPPTKAKPER-D--KKERPGR 376 (395)
T ss_pred hhhccCCHHHhhHHHHHHHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHHHhccCCCCCCcccccc-c--cccCccc
Confidence 3455789999877666 89999999999999999988 99999999999999999999999999999 5 8899999
Q ss_pred HHHhhHHHhhhhHHHHHhh
Q psy11166 118 RVRKMKERYAMTELRKQQN 136 (1746)
Q Consensus 118 R~RK~KE~~~~TelRK~~N 136 (1746)
+.|++|+++.-++.|+.+|
T Consensus 377 ~~~~~~~~~~~~~~~~~~~ 395 (395)
T COG1498 377 YRRKKKEKKAKSERRGLQN 395 (395)
T ss_pred cccccccccchhhhhhccC
Confidence 9999999999999988765
No 100
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=98.84 E-value=1e-09 Score=92.54 Aligned_cols=38 Identities=55% Similarity=1.009 Sum_probs=33.1
Q ss_pred cccccccccccccCCCCCCCCCcCC-CCCCCCccchhHH
Q psy11166 374 KVKCGACGLVGHMRTNKACPQYSLT-GQMPMNVAMTEEQ 411 (1746)
Q Consensus 374 ~~~c~~cg~~ghm~tnk~CP~Y~~~-i~~PmdlamtEeQ 411 (1746)
+++|++||++|||+||+.||+|... ...|..+.++++|
T Consensus 1 k~kC~~CG~~GH~~t~k~CP~~~~~~a~~p~~~g~~~ek 39 (40)
T PF15288_consen 1 KVKCKNCGAFGHMRTNKRCPMYCWSGALAPQPVGMTKEK 39 (40)
T ss_pred CccccccccccccccCccCCCCCCCCCCCCccccccccc
Confidence 5799999999999999999999976 4467888888865
No 101
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.83 E-value=2.1e-09 Score=109.41 Aligned_cols=77 Identities=23% Similarity=0.298 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhccccCCCccccccCCCC--CCCCCcccccCCcccHHHHHHHhhcCCC-------CCHHHHHHHHHHhhh
Q psy11166 500 ILEKILNEMRDMSQTEPNVKQFSFPVNA--KLVPDYYKIVTRPMDLQTIRENLRSKKY-------QSREEFLADVNQIVE 570 (1746)
Q Consensus 500 ~LeeIL~eL~s~~~~~~~S~pFl~PVd~--ke~PDYYeIIK~PMDLsTIkkKLk~g~Y-------~SveEF~aDVrLIF~ 570 (1746)
.++.+++.+..+. .++.++||..||++ ..+||||++||+||||+||+++|.++.| ..-..+..++..++.
T Consensus 4 ~~~~~l~~l~~~~-~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 4 ALERVLRELKRHR-RNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHhh-hCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 4556666666543 25789999999999 8899999999999999999999999744 333445566666666
Q ss_pred hhcccCC
Q psy11166 571 NSTLYNG 577 (1746)
Q Consensus 571 NC~~YN~ 577 (1746)
||..+|.
T Consensus 83 ~~~~~~~ 89 (114)
T cd05494 83 RRSPSNI 89 (114)
T ss_pred ccCcccc
Confidence 6666664
No 102
>KOG0386|consensus
Probab=98.80 E-value=7.4e-09 Score=131.37 Aligned_cols=103 Identities=20% Similarity=0.277 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhccc--cCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy11166 499 SILEKILNEMRDMSQ--TEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576 (1746)
Q Consensus 499 ~~LeeIL~eL~s~~~--~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN 576 (1746)
..+..|+.....+.+ .+..+..|...++++.+||||.+|++||++..|+++|.++.|.+..+...|+.++|.|+++||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 346677777776665 467799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhH
Q psy11166 577 GAKSILTDAARRMLTLCVELLGKKE 601 (1746)
Q Consensus 577 ~~gS~I~k~A~~Lek~fee~lke~E 601 (1746)
.+||.+|.+|..|.+++.....+..
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~ 1131 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEIS 1131 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHh
Confidence 9999999999999999988776554
No 103
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=98.79 E-value=1.5e-09 Score=115.27 Aligned_cols=84 Identities=40% Similarity=0.609 Sum_probs=64.6
Q ss_pred cccchhhhcccchhhhccCCCCCCCCCCc------cchhhcchhHHHHHHH-hhccceeehhccccCCCCCCc-ccHHHH
Q psy11166 10 DMEDEEEDNEGGEEMAADGMETEPDDVKP------DVHKIIEQDIKGVRCR-LAAKCALAARVDAAHDSVDGA-IGRSFR 81 (1746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~~~a~~-vaaK~~LAARvD~~~~~~~G~-~G~~~r 81 (1746)
-|-.--=--=|.++....|+.+......- ++.+..|+++|++|.| ||+||+||||||+++++++|+ +|.+||
T Consensus 58 k~Pasniq~lGaeK~~~~~l~~~~~~pk~G~i~~~~~V~~~p~~~r~k~~R~lA~K~aLAARiD~~~~~~~~~~~G~~~r 137 (150)
T PF01798_consen 58 KMPASNIQVLGAEKALFRGLKTKAKTPKYGYIYQSDLVQKAPPKLRGKAARMLAAKCALAARIDAFSESPDGSAFGKKLR 137 (150)
T ss_dssp TS-HHHHTTSTCHHHHHHHHCCT-SSTSSSGGGGSHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHT-STTHHHHHHHHH
T ss_pred hCCHhhHHHHHhHHHHhHHhcccCCCCCeeEEecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 33333333456777777788766554442 3447899999999988 899999999999999999995 999999
Q ss_pred HHHHHHHhhhcC
Q psy11166 82 EDIEKKLDKLTE 93 (1746)
Q Consensus 82 eei~~ki~K~~E 93 (1746)
++|++||+||+|
T Consensus 138 e~i~~ki~k~~e 149 (150)
T PF01798_consen 138 EEIEKKIEKLQE 149 (150)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999998
No 104
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.71 E-value=5.9e-09 Score=106.23 Aligned_cols=77 Identities=21% Similarity=0.244 Sum_probs=57.7
Q ss_pred hhhhhHHHHHHHHhhcCCccccccccCCc--cccccccccccCccChHHHHHHHhCCCC-------CCHHHHHHHHHHHH
Q psy11166 622 ALSFIFDDIVNNKLKNMADAWIFIKPVNK--KFFKDYYSVVQKPMDLETIGKKAQSHKY-------HSRYEFLADIELIL 692 (1746)
Q Consensus 622 aLS~IL~eIV~~kLk~~~~S~PF~~PVd~--k~vPDYyeIIKkPMDLsTIkkKL~s~~Y-------kS~~EF~~DV~LIf 692 (1746)
++.+++..+ .++.+++.+|||..||++ ..+||||++|++||||+||+++|.++.+ ..-..+..++..++
T Consensus 4 ~~~~~l~~l--~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (114)
T cd05494 4 ALERVLREL--KRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDE 81 (114)
T ss_pred HHHHHHHHH--HHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccc
Confidence 345555433 466778899999999999 7799999999999999999999999744 33444445555566
Q ss_pred HHhcccCC
Q psy11166 693 SNSVLYNG 700 (1746)
Q Consensus 693 ~NA~tYN~ 700 (1746)
.||..+|.
T Consensus 82 ~~~~~~~~ 89 (114)
T cd05494 82 GRRSPSNI 89 (114)
T ss_pred cccCcccc
Confidence 66666654
No 105
>KOG0955|consensus
Probab=98.58 E-value=4.9e-08 Score=127.09 Aligned_cols=86 Identities=33% Similarity=0.471 Sum_probs=81.4
Q ss_pred CCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHH
Q psy11166 516 PNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVE 595 (1746)
Q Consensus 516 ~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek~fee 595 (1746)
.-...|..||++.++|||+++|++|||+.||+.++.++.|.++++|.+|+.||+.||+.||..+..++++|..+++...+
T Consensus 581 D~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~ 660 (1051)
T KOG0955|consen 581 DSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLRELIKK 660 (1051)
T ss_pred cccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHHhhhhh
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhhhhH
Q psy11166 596 LLGKKE 601 (1746)
Q Consensus 596 ~lke~E 601 (1746)
.+....
T Consensus 661 ~~~~ar 666 (1051)
T KOG0955|consen 661 DFRNAR 666 (1051)
T ss_pred HHHhcc
Confidence 876543
No 106
>KOG0955|consensus
Probab=98.51 E-value=2.2e-07 Score=121.13 Aligned_cols=91 Identities=30% Similarity=0.406 Sum_probs=84.5
Q ss_pred HHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHH
Q psy11166 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKL 712 (1746)
Q Consensus 633 ~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~L 712 (1746)
..+...+....|..||++.++|||+++|++||||.||+.++.++.|.++++|..|+.||+.||+.||..+..+|..|..+
T Consensus 575 ~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~ 654 (1051)
T KOG0955|consen 575 DKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRL 654 (1051)
T ss_pred HHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHH
Confidence 36666777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy11166 713 LEEAKLALEKY 723 (1746)
Q Consensus 713 qk~fek~l~el 723 (1746)
++.....+...
T Consensus 655 ~e~~~~~~~~a 665 (1051)
T KOG0955|consen 655 RELIKKDFRNA 665 (1051)
T ss_pred HhhhhhHHHhc
Confidence 99887776654
No 107
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.48 E-value=7.6e-08 Score=98.54 Aligned_cols=42 Identities=31% Similarity=0.517 Sum_probs=39.8
Q ss_pred CcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q psy11166 539 RPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKS 580 (1746)
Q Consensus 539 ~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS 580 (1746)
.||||+||++||.+|.|.++++|++||+|||.||++||.++.
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 599999999999999999999999999999999999998643
No 108
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.47 E-value=2.1e-07 Score=95.42 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=39.2
Q ss_pred CccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy11166 662 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPG 702 (1746)
Q Consensus 662 kPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~ 702 (1746)
.||||+||++||.+|+|.++.+|++||+|||.||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 59999999999999999999999999999999999999763
No 109
>KOG0386|consensus
Probab=98.40 E-value=1.9e-07 Score=118.99 Aligned_cols=88 Identities=32% Similarity=0.484 Sum_probs=82.0
Q ss_pred cCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q psy11166 637 NMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEA 716 (1746)
Q Consensus 637 ~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~f 716 (1746)
+++.+..|...++.+.+||||++|++||++..|++++.++.|.+..+...||.++|.||++||..+|.+|.+|..|+.++
T Consensus 1044 ~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l~~~~ 1123 (1157)
T KOG0386|consen 1044 GRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVLQSVF 1123 (1157)
T ss_pred ccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhccCCceechhHHHHHHHH
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHH
Q psy11166 717 KLALEKYD 724 (1746)
Q Consensus 717 ek~l~el~ 724 (1746)
.....++.
T Consensus 1124 ~~~~~~~~ 1131 (1157)
T KOG0386|consen 1124 KSARQEIS 1131 (1157)
T ss_pred hhhHHHHh
Confidence 87766554
No 110
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.27 E-value=1.9e-07 Score=113.32 Aligned_cols=48 Identities=40% Similarity=0.739 Sum_probs=37.0
Q ss_pred CCCcccccCCCCccCcC----CCCCcccccccccccccccCCCCCCCCCcCC
Q psy11166 351 FHSKHRSDSSLTPKRKY----KSKPDLKVKCGACGLVGHMRTNKACPQYSLT 398 (1746)
Q Consensus 351 ~~~~~~~~~~~~~~~~~----~~~~~~~~~c~~cg~~ghm~tnk~CP~Y~~~ 398 (1746)
-++++||.+++..|.-. +-..++.++|++|||+|||+|||+||+|+..
T Consensus 910 eKs~qRR~AR~~sk~G~dL~G~GRK~Ttr~C~nCGQvGHmkTNK~CP~f~s~ 961 (968)
T COG5179 910 EKSQQRRAARQNSKNGSDLAGKGRKNTTRTCGNCGQVGHMKTNKACPKFSSK 961 (968)
T ss_pred hhhHHHHHHHhhhcccccccCCCCCCcceecccccccccccccccCccccCC
Confidence 47777888776655211 1145789999999999999999999999854
No 111
>KOG1828|consensus
Probab=97.43 E-value=2.9e-05 Score=92.06 Aligned_cols=89 Identities=22% Similarity=0.221 Sum_probs=78.1
Q ss_pred HHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHH
Q psy11166 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKL 712 (1746)
Q Consensus 633 ~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~L 712 (1746)
+++-....-.-|..||.....|+|.++|+.|||+.|++.|++.++|.++.+|..|.+++..||..||..+..++..|+.|
T Consensus 29 rkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL 108 (418)
T KOG1828|consen 29 RKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRL 108 (418)
T ss_pred HhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcccccccccc
Confidence 45544445566888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q psy11166 713 LEEAKLALE 721 (1746)
Q Consensus 713 qk~fek~l~ 721 (1746)
.-+-.....
T Consensus 109 ~~v~~~~~q 117 (418)
T KOG1828|consen 109 CPVRLGMTQ 117 (418)
T ss_pred chhhcchhh
Confidence 766544443
No 112
>KOG1832|consensus
Probab=95.75 E-value=0.0049 Score=78.95 Aligned_cols=16 Identities=6% Similarity=0.293 Sum_probs=10.1
Q ss_pred hhcccCCCCChHHHHH
Q psy11166 571 NSTLYNGAKSILTDAA 586 (1746)
Q Consensus 571 NC~~YN~~gS~I~k~A 586 (1746)
||..||+-+.-|..++
T Consensus 1234 n~a~FsP~D~LIlndG 1249 (1516)
T KOG1832|consen 1234 NLAHFSPCDTLILNDG 1249 (1516)
T ss_pred cccccCCCcceEeeCc
Confidence 7777777666555444
No 113
>KOG2573|consensus
Probab=93.79 E-value=0.036 Score=66.89 Aligned_cols=41 Identities=29% Similarity=0.567 Sum_probs=37.8
Q ss_pred HHhhccceeehhccccCCCCCCcccHHHHHHHHHHHhhhcC
Q psy11166 53 CRLAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTE 93 (1746)
Q Consensus 53 ~~vaaK~~LAARvD~~~~~~~G~~G~~~reei~~ki~K~~E 93 (1746)
+.+|.||++|+|||++...|+..+|..||++|+++|+=+..
T Consensus 372 RyLAnKCSIAsrIDcFse~pts~fGe~Lr~qVEeRL~fy~t 412 (498)
T KOG2573|consen 372 RYLANKCSIASRIDCFSEDPTSVFGEKLREQVEERLEFYET 412 (498)
T ss_pred HHHHhhccHHHhhhhcccCCchHHHHHHHHHHHHHHHhhhc
Confidence 44999999999999999999999999999999999987654
No 114
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=93.58 E-value=0.066 Score=65.68 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=7.9
Q ss_pred HHHHHHHhhhhhcccCC
Q psy11166 731 EKTISQVRARAMEQADV 747 (1746)
Q Consensus 731 E~~I~~~~e~a~eeade 747 (1746)
|..|..+.+.+++++.+
T Consensus 35 E~~IRkLgeEaEEEA~~ 51 (458)
T PF10446_consen 35 ENAIRKLGEEAEEEAEE 51 (458)
T ss_pred HHHHhhhhHHHHHHHhh
Confidence 44444454454444443
No 115
>KOG2572|consensus
Probab=93.38 E-value=0.046 Score=65.98 Aligned_cols=55 Identities=35% Similarity=0.360 Sum_probs=45.3
Q ss_pred hcchhHH-HHHHHhhccceeehhccccCCCCCCcccHHHHHHHHHHHhhhcCCCCC
Q psy11166 43 IIEQDIK-GVRCRLAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPV 97 (1746)
Q Consensus 43 ~~~~d~~-~~a~~vaaK~~LAARvD~~~~~~~G~~G~~~reei~~ki~K~~EPPp~ 97 (1746)
+.|+--| +.|+.+|||++||+|+|++....+|.+|-..|..++.+|.-+..--..
T Consensus 347 Qa~pKnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~klE~rlr~lE~r~l~ 402 (498)
T KOG2572|consen 347 QASPKNKGKIARSLAAKTALAARIDALGEESTNEIGVENRAKLEKRLRSLEGRDLQ 402 (498)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhhhccCcc
Confidence 3344443 667779999999999999999999999999999999999887665444
No 116
>KOG1832|consensus
Probab=92.71 E-value=0.11 Score=67.45 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHhhhhhcccCC
Q psy11166 557 SREEFLADVNQIVENSTLYNG 577 (1746)
Q Consensus 557 SveEF~aDVrLIF~NC~~YN~ 577 (1746)
+...|--+=.|||+|...+.-
T Consensus 1234 n~a~FsP~D~LIlndGvLWDv 1254 (1516)
T KOG1832|consen 1234 NLAHFSPCDTLILNDGVLWDV 1254 (1516)
T ss_pred cccccCCCcceEeeCceeeee
Confidence 455566666788888877753
No 117
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=92.41 E-value=0.12 Score=68.40 Aligned_cols=11 Identities=9% Similarity=-0.312 Sum_probs=6.9
Q ss_pred ccccccccccc
Q psy11166 376 KCGACGLVGHM 386 (1746)
Q Consensus 376 ~c~~cg~~ghm 386 (1746)
.|..|....|.
T Consensus 293 ~l~~edr~l~R 303 (784)
T PF04931_consen 293 QLFSEDRYLHR 303 (784)
T ss_pred HhhcccccHHH
Confidence 45666666665
No 118
>KOG0732|consensus
Probab=91.05 E-value=0.28 Score=66.03 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcccc-CCCccccccCCCCCC-----CCCcccccCCcccHHHHHHHhhcCCCCCHHHHHH--HHHHhhhhh
Q psy11166 501 LEKILNEMRDMSQT-EPNVKQFSFPVNAKL-----VPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLA--DVNQIVENS 572 (1746)
Q Consensus 501 LeeIL~eL~s~~~~-~~~S~pFl~PVd~ke-----~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~a--DVrLIF~NC 572 (1746)
+..++.+|....-. +..+..|-.|++... +++|-.+|++|||+...-.++..+.|.++.+|.. ++.|||.|+
T Consensus 515 ~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~ 594 (1080)
T KOG0732|consen 515 VRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPR 594 (1080)
T ss_pred hHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcH
Confidence 33444444443222 233677888887544 5699999999999999999999999999999999 999999999
Q ss_pred cccCCCC
Q psy11166 573 TLYNGAK 579 (1746)
Q Consensus 573 ~~YN~~g 579 (1746)
+.||+..
T Consensus 595 lli~~~~ 601 (1080)
T KOG0732|consen 595 LLINGGK 601 (1080)
T ss_pred HhcCCCc
Confidence 9999875
No 119
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=89.93 E-value=0.38 Score=51.33 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=47.6
Q ss_pred ccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 663 PMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDH 726 (1746)
Q Consensus 663 PMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fek~l~el~~~ 726 (1746)
|.||.-+++|+..|.|+|+.+|..||-.|+.-++.=-+....+-+.-..+.-+|-++++....+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~W 122 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPW 122 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999999887554433333333334455566666665544
No 120
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=89.49 E-value=0.15 Score=62.72 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=8.5
Q ss_pred HHHHhhhhcCCCccccc
Q psy11166 815 NIRMLRFQSGLDKEDFE 831 (1746)
Q Consensus 815 ~~r~~r~~~~~~~~d~~ 831 (1746)
.+|-|=.|+.++.+.+|
T Consensus 37 ~IRkLgeEaEEEA~~EE 53 (458)
T PF10446_consen 37 AIRKLGEEAEEEAEEEE 53 (458)
T ss_pred HHhhhhHHHHHHHhhcc
Confidence 45555556554444444
No 121
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=88.79 E-value=0.47 Score=50.63 Aligned_cols=61 Identities=20% Similarity=0.378 Sum_probs=45.9
Q ss_pred cccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 540 PMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 540 PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
|-||..+++|+..|.|+++.+|.+||-.|+.-++.=-+....+-++-..+..+|-+.+.+.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998777554444444444444555565555443
No 122
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=87.58 E-value=0.64 Score=61.85 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=5.3
Q ss_pred CCCHHHHHHHH
Q psy11166 555 YQSREEFLADV 565 (1746)
Q Consensus 555 Y~SveEF~aDV 565 (1746)
...-.+++.++
T Consensus 406 ~~~~~~~~~~i 416 (784)
T PF04931_consen 406 SPKSEQWVEDI 416 (784)
T ss_pred hhhhHHHHHHH
Confidence 33344555555
No 123
>KOG2038|consensus
Probab=82.54 E-value=0.91 Score=59.07 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=17.9
Q ss_pred ccceeccCCCccccccccccchhhcccccccCCCC
Q psy11166 257 RDLFMTSNTPNTIRQDKTLNKLKIKFLKPCEEKPN 291 (1746)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1746)
.|||++---|+ .||++---.||-+-||
T Consensus 255 kdlfI~~LLPd--------RKLk~f~qrp~~~l~~ 281 (988)
T KOG2038|consen 255 KDLFINGLLPD--------RKLKYFSQRPLLELTN 281 (988)
T ss_pred HHHHHhccCcc--------hhhHHHhhChhhhccc
Confidence 46777766665 3666655678887773
No 124
>KOG0644|consensus
Probab=81.41 E-value=1.1 Score=58.82 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=52.8
Q ss_pred cccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Q psy11166 659 VVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLAL 720 (1746)
Q Consensus 659 IIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fek~l 720 (1746)
.-.-|..+..|..+|++.+|++.+.|..||..|.+||.+|.+.+-.+...+..|...|...+
T Consensus 1049 ~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1049 RFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred CCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 35678999999999999999999999999999999999999988766666666666665544
No 125
>KOG2051|consensus
Probab=76.04 E-value=2.6 Score=56.74 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHH
Q psy11166 684 FLADIELILSNSVLYNGPGSQVTEKAE 710 (1746)
Q Consensus 684 F~~DV~LIf~NA~tYN~p~S~Iy~~A~ 710 (1746)
|=-|+.-.|.|+..|-.|...+|..-.
T Consensus 819 ~Pld~~~~f~d~~~~~rp~~k~y~~~e 845 (1128)
T KOG2051|consen 819 QPLDMEYEFEDFLELVRPEMKNYNTLE 845 (1128)
T ss_pred CCCchhhhHHhhhhhccccceecccHH
Confidence 556777788888888877766664433
No 126
>KOG1991|consensus
Probab=75.87 E-value=18 Score=49.18 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=26.7
Q ss_pred cccCCccc--HHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCC
Q psy11166 535 KIVTRPMD--LQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGA 578 (1746)
Q Consensus 535 eIIK~PMD--LsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~ 578 (1746)
.-|.-+|+ |..|.+=++ ...-+|..|+...++|-.+|-.+
T Consensus 674 ~~Isp~mW~ll~li~e~~~----~~~~dyf~d~~~~l~N~vt~g~~ 715 (1010)
T KOG1991|consen 674 KEISPIMWGLLELILEVFQ----DDGIDYFTDMMPALHNYVTYGTP 715 (1010)
T ss_pred cccCHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhhheeeCch
Confidence 34555555 334444333 23478999999999999999764
No 127
>KOG0262|consensus
Probab=75.26 E-value=9.3 Score=52.51 Aligned_cols=24 Identities=17% Similarity=0.618 Sum_probs=16.1
Q ss_pred cccccccceEEeeccccccccccch
Q psy11166 1013 FSESHSGWVQLANIDLPVFRFNMSL 1037 (1746)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1746)
|--.+.-|.|| .|-||+..+|+-+
T Consensus 1435 fd~~~~~wcev-~~~lp~~~~k~~m 1458 (1640)
T KOG0262|consen 1435 FDKESGKWCEV-ELKLPLDKEKLDM 1458 (1640)
T ss_pred cccccCcEEEE-EEEecCCCcchHH
Confidence 44455668888 4788887776643
No 128
>KOG3794|consensus
Probab=70.06 E-value=2.2 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.856 Sum_probs=23.4
Q ss_pred cccccccccccccCCCCCCCCCcCC
Q psy11166 374 KVKCGACGLVGHMRTNKACPQYSLT 398 (1746)
Q Consensus 374 ~~~c~~cg~~ghm~tnk~CP~Y~~~ 398 (1746)
+++|-.|+..||+-|-+.||+|...
T Consensus 124 NVrC~kChkwGH~n~DreCplf~~~ 148 (453)
T KOG3794|consen 124 NVRCLKCHKWGHINTDRECPLFGKS 148 (453)
T ss_pred eeeEEeecccccccCCccCcchhhc
Confidence 7899999999999999999999754
No 129
>KOG2038|consensus
Probab=69.82 E-value=1.9 Score=56.37 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=12.2
Q ss_pred CCccccccCCCC---CCCCCccccc
Q psy11166 516 PNVKQFSFPVNA---KLVPDYYKIV 537 (1746)
Q Consensus 516 ~~S~pFl~PVd~---ke~PDYYeII 537 (1746)
.++.||.+-.+. ...++-|.+.
T Consensus 482 NRAfPfaq~~ddk~~~~~~tLFkl~ 506 (988)
T KOG2038|consen 482 NRAFPFAQTADDKLEEQMKTLFKLT 506 (988)
T ss_pred cccCCcccCchHHHHHHhHHHHHHH
Confidence 457788876652 2345444443
No 130
>KOG1999|consensus
Probab=69.49 E-value=4 Score=54.75 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=10.7
Q ss_pred ceEEeeccccccccccchh
Q psy11166 1020 WVQLANIDLPVFRFNMSLA 1038 (1746)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~ 1038 (1746)
.+||.+++.-=-+..++|.
T Consensus 276 LAqVd~Vd~~~n~v~lKlI 294 (1024)
T KOG1999|consen 276 LAQVDDVDENRNRVRLKLI 294 (1024)
T ss_pred eeeeeeecccCCEEEEEEe
Confidence 4566666655555555553
No 131
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=69.20 E-value=2.7 Score=30.88 Aligned_cols=18 Identities=44% Similarity=1.023 Sum_probs=14.4
Q ss_pred ccccccccccccCCCCCCCC
Q psy11166 375 VKCGACGLVGHMRTNKACPQ 394 (1746)
Q Consensus 375 ~~c~~cg~~ghm~tnk~CP~ 394 (1746)
++|-.||+.||+.. .||.
T Consensus 1 ~~C~~C~~~GH~~~--~Cp~ 18 (18)
T PF00098_consen 1 RKCFNCGEPGHIAR--DCPK 18 (18)
T ss_dssp SBCTTTSCSSSCGC--TSSS
T ss_pred CcCcCCCCcCcccc--cCcc
Confidence 47999999999974 5663
No 132
>PTZ00482 membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Probab=68.15 E-value=13 Score=50.30 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=13.2
Q ss_pred cCCCCcccccccCCCCCchhh
Q psy11166 890 TDPNTEETSMDVDPNYDPSEF 910 (1746)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~ 910 (1746)
.|-+--+...-+||-|-..=+
T Consensus 257 ~GNPlGd~~~~vDPGYR~pII 277 (844)
T PTZ00482 257 FGNPLGEPDSLTDPGYRGQII 277 (844)
T ss_pred ecCCCCCccccCCCcccchhh
Confidence 344555667778888866533
No 133
>KOG0732|consensus
Probab=68.07 E-value=4 Score=55.66 Aligned_cols=63 Identities=27% Similarity=0.342 Sum_probs=56.2
Q ss_pred ccccccccCCccc-----cccccccccCccChHHHHHHHhCCCCCCHHHHHH--HHHHHHHHhcccCCCC
Q psy11166 640 DAWIFIKPVNKKF-----FKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLA--DIELILSNSVLYNGPG 702 (1746)
Q Consensus 640 ~S~PF~~PVd~k~-----vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~--DV~LIf~NA~tYN~p~ 702 (1746)
.+..|..|++... +++|-++|+.+||+.....++..+.|.++.+|.. ++.|||.|++.||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 3567888887554 5689999999999999999999999999999999 9999999999999854
No 134
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=65.58 E-value=13 Score=50.56 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=32.9
Q ss_pred cCccchhccCChHHHHHHHHHHhCCcccCCCchHHHhhcchhhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11166 1256 RFPELDTLVVSPLEYLRTVRELGNDLDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQF 1335 (1746)
Q Consensus 1256 rFPELesLV~~p~~Y~r~V~~igN~ld~~k~~e~L~~iL~~~timvVsv~AstS~G~~Lseedl~~I~~ac~~i~~L~~~ 1335 (1746)
.||-|..| -|+++|..|=--.|.- -.|++++.+++ +-.-++-..-|-.|+..-+-+|.++++-...
T Consensus 536 ~~P~l~~L-----vllklv~~lFPTSD~~------HpVVTPalllm---~~~L~q~~v~s~~di~~GlfL~~l~l~y~~~ 601 (840)
T PF04147_consen 536 SWPSLSDL-----VLLKLVGTLFPTSDFR------HPVVTPALLLM---SEYLSQCRVRSLRDIASGLFLCTLLLEYQSL 601 (840)
T ss_pred CCCChhHH-----HHHHHHHHhcCccccc------CcchhHHHHHH---HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 36776654 3566666553333321 12344433321 1122233333677777777777777665443
No 135
>KOG0644|consensus
Probab=64.43 E-value=6.8 Score=51.93 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=49.4
Q ss_pred cCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHH
Q psy11166 537 VTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVE 595 (1746)
Q Consensus 537 IK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek~fee 595 (1746)
-.-|..|..|..+|++++|++.+.|..|+..|..||.+|-+.+-.+...+..|...|..
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 55789999999999999999999999999999999999998877555555555555443
No 136
>KOG4264|consensus
Probab=63.47 E-value=5.7 Score=50.16 Aligned_cols=31 Identities=39% Similarity=0.458 Sum_probs=16.4
Q ss_pred cCCCCCCCccccccc-cCCCCCCCCCcccccc
Q psy11166 761 QSGLDKEDFEYTDAE-GNIKKENDGGLLEKDL 791 (1746)
Q Consensus 761 ~sGsssEdeEd~DdE-g~~~~e~dGg~~~~dl 791 (1746)
.+|+++|+.+|+++| ++.++|++-+..+.++
T Consensus 84 asgsdsEe~ed~~~Edge~~eEnskgE~ks~~ 115 (694)
T KOG4264|consen 84 ASGSDSEEKEDEAAEDGEEDEENSKGEEKSNL 115 (694)
T ss_pred cccCCcccccccccccCccccccccchhhhhh
Confidence 456666666555554 4455566644444433
No 137
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=60.81 E-value=7.1 Score=55.26 Aligned_cols=123 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhcccCCCCCCCCCCccccccCCCCCCCccccccccCCCCCCCCCccccccccCCcccccccccchhHHHHHHHHHHHhh
Q psy11166 741 AMEQADVDSFSTWTQDDDQFQSGLDKEDFEYTDAEGNIKKENDGGLLEKDLEFSSEEERDDTISSNQAWTKKILNIRMLR 820 (1746)
Q Consensus 741 a~eeaded~deeeeeedde~~sGsssEdeEd~DdEg~~~~e~dGg~~~~dl~~s~dee~dd~~sS~q~~~k~i~~~r~~r 820 (1746)
+.++.|....+++++.++++.....--+++.++-+.....-.+-+ +.+|+-++.++++.++.+....-+.
T Consensus 3944 a~ed~d~q~~~de~e~~ddvg~ddeiq~d~~en~~~~~pe~e~ld-lpedl~ld~~~~d~~~d~dl~dmdm--------- 4013 (4600)
T COG5271 3944 ALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLD-LPEDLKLDEKEGDVSKDSDLEDMDM--------- 4013 (4600)
T ss_pred CccccchhhhcchhhhccccCcccccCcchhcccCCCCCccccCC-CchhcCCccccccccccCChhhccc---------
Q ss_pred hhcCCCcccccccC-----------ccccccccccccccccccccCcccccCccccccccCchhHH
Q psy11166 821 FQSGLDKEDFEYTD-----------AEGNIKKENDGGLLEKDLEFSSEEERDDNDMEEVVDDDSQQ 875 (1746)
Q Consensus 821 ~~~~~~~~d~~~~d-----------~~~~~~~~~~~~~~~~d~~~~d~dddDD~d~~~~~Ddd~~~ 875 (1746)
|++++.+++.+.+ ++.|.=||+......-|++.||+..++| ++|+.+-+|..+
T Consensus 4014 -e~~den~eead~e~dep~~ded~~e~~~tlded~~~dd~~dla~dd~k~ned-g~ee~~~~nee~ 4077 (4600)
T COG5271 4014 -EAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNED-GFEENVQENEES 4077 (4600)
T ss_pred -hhcccchhhcccccCCCCCCCCccccccccchhhccchhhhhhccccccccc-chhhhhhcchhh
No 138
>KOG0943|consensus
Probab=60.09 E-value=6.4 Score=53.37 Aligned_cols=55 Identities=27% Similarity=0.312 Sum_probs=29.0
Q ss_pred cchhhhcccchhhhc---cCCCCCCCCCCccchhhcchhH--HHHHHHhhccceeehhccccC
Q psy11166 12 EDEEEDNEGGEEMAA---DGMETEPDDVKPDVHKIIEQDI--KGVRCRLAAKCALAARVDAAH 69 (1746)
Q Consensus 12 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~--~~~a~~vaaK~~LAARvD~~~ 69 (1746)
|-+|-|||..+ ... +-|++-|+++...|-=++-+-. |+--..-|| +.||.||+..
T Consensus 517 EKaeAd~eKkk-h~S~Geapm~sipavqsnsieffVGqQV~lkkaPLY~AG--aVAaqIda~~ 576 (3015)
T KOG0943|consen 517 EKAEADNEKKK-HSSAGEAPMPSIPAVQSNSIEFFVGQQVCLKKAPLYHAG--AVAAQIDAGI 576 (3015)
T ss_pred HHHhhhccccc-ccccCcCCCCCcccccccceeEEecceeeeccCCCcccc--ceeEeeccCC
Confidence 44566666543 333 4477778888766554443222 111111233 4577888764
No 139
>KOG0943|consensus
Probab=57.11 E-value=14 Score=50.49 Aligned_cols=9 Identities=56% Similarity=0.604 Sum_probs=6.3
Q ss_pred hhhhhccCC
Q psy11166 908 SEFLLNRTE 916 (1746)
Q Consensus 908 ~~~~~~~~~ 916 (1746)
|.||-|+.+
T Consensus 1931 ssflSN~Re 1939 (3015)
T KOG0943|consen 1931 SSFLSNLRE 1939 (3015)
T ss_pred hhhhhhccc
Confidence 678877654
No 140
>KOG1999|consensus
Probab=53.08 E-value=7.4 Score=52.36 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=5.4
Q ss_pred ccCCcccccc
Q psy11166 957 VSHPCFWLCS 966 (1746)
Q Consensus 957 ~~~~~~~~~~ 966 (1746)
|-.|-.|.|-
T Consensus 162 vkDP~LW~VK 171 (1024)
T KOG1999|consen 162 VKDPNLWIVK 171 (1024)
T ss_pred CCCCCeeEEE
Confidence 3346666653
No 141
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=51.96 E-value=16 Score=45.93 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=14.0
Q ss_pred HhcCcccccCCCCccccc-ccCC
Q psy11166 882 QLGNITYYTDPNTEETSM-DVDP 903 (1746)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~-~~~~ 903 (1746)
.| -.+||-|.-..+++. ||+|
T Consensus 283 sL-~~Gy~sg~e~~~~~~~d~~~ 304 (432)
T PF09073_consen 283 SL-MGGYISGSESEDEDDEDVAP 304 (432)
T ss_pred hh-ccCcccCchhhhcchhhhch
Confidence 45 678999877665554 5555
No 142
>KOG2051|consensus
Probab=51.30 E-value=24 Score=48.33 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=3.0
Q ss_pred hhhhhcc
Q psy11166 568 IVENSTL 574 (1746)
Q Consensus 568 IF~NC~~ 574 (1746)
++.||+.
T Consensus 606 ~iENay~ 612 (1128)
T KOG2051|consen 606 LIENAYY 612 (1128)
T ss_pred HHHHhHH
Confidence 3444443
No 143
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=51.20 E-value=5.1 Score=41.03 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=9.3
Q ss_pred HHHHHHHhcCcccc
Q psy11166 876 AAEAMVQLGNITYY 889 (1746)
Q Consensus 876 ~~~~~~~~~~~~~~ 889 (1746)
-++||--++-+.-|
T Consensus 46 fgea~~~~~~v~rY 59 (101)
T PF09026_consen 46 FGEAMAYFTMVKRY 59 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhhcchHhhh
Confidence 47777777666555
No 144
>KOG2014|consensus
Probab=45.47 E-value=21 Score=43.28 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=59.5
Q ss_pred hhhhhheeccccCCCC---CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCchhHHhchHHHHHHHHHhCCC
Q psy11166 1298 TIMVVSVTASTTQGQL---LSEEELSEVYQACDMAFE-LNQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGL 1373 (1746)
Q Consensus 1298 timvVsv~AstS~G~~---Lseedl~~I~~ac~~i~~-L~~~r~~i~~YVesRM~~IAPNLsALVG~~vAArLI~~AGGL 1373 (1746)
.+|.+.+.-.+|-|++ .+++|+.+++..-+.+++ ..-....+.+|+..--..+|| .+|+||..+|...|-.-++.
T Consensus 228 ~ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~P-v~AvVGGivaQevIk~isk~ 306 (331)
T KOG2014|consen 228 FLLPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAP-VCAVVGGILAQEVIKAISKK 306 (331)
T ss_pred ehHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCc-hhhhhhhHhHHHHHHHhhcC
Confidence 4556666556666554 559999999988777777 666677777899999999999 99999999999998877766
No 145
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.61 E-value=16 Score=42.79 Aligned_cols=8 Identities=38% Similarity=1.020 Sum_probs=3.4
Q ss_pred cceeecCC
Q psy11166 1101 NSVLYNGP 1108 (1746)
Q Consensus 1101 ~~~~~~~~ 1108 (1746)
+..+|+||
T Consensus 225 ~K~~~~GP 232 (240)
T PF05764_consen 225 KKKIYTGP 232 (240)
T ss_pred ccccCCCC
Confidence 33344444
No 146
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=40.23 E-value=65 Score=44.08 Aligned_cols=18 Identities=50% Similarity=0.761 Sum_probs=11.7
Q ss_pred hhhhHHHh------hhcHHHHHhh
Q psy11166 1522 VRKMKERY------AMTELRKQQN 1539 (1746)
Q Consensus 1522 ~RK~Ke~~------~~telrk~~N 1539 (1746)
.+|||.++ +|-||||-.+
T Consensus 782 ~~KLk~q~KkErKGA~RELRKD~~ 805 (840)
T PF04147_consen 782 LRKLKAQLKKERKGAMRELRKDNR 805 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666543 5888887654
No 147
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=36.63 E-value=12 Score=45.94 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhh
Q psy11166 559 EEFLADVNQIVEN 571 (1746)
Q Consensus 559 eEF~aDVrLIF~N 571 (1746)
++.+..|+--|.|
T Consensus 8 ~dVI~~vr~dF~~ 20 (375)
T PF03153_consen 8 DDVINNVREDFEE 20 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666655
No 148
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=35.33 E-value=24 Score=46.51 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=8.1
Q ss_pred chhHHHHHhhhh
Q psy11166 1036 SLADELLADMRL 1047 (1746)
Q Consensus 1036 ~~~~~~~~~~~~ 1047 (1746)
+-...|||+|-+
T Consensus 337 krL~~lLAkMGi 348 (622)
T PF02724_consen 337 KRLHKLLAKMGI 348 (622)
T ss_pred HHHHHHHHHhCC
Confidence 344678888865
No 149
>KOG0262|consensus
Probab=34.75 E-value=72 Score=44.73 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHhh
Q psy11166 320 EHSVTLMIRLLRQ 332 (1746)
Q Consensus 320 ~~~~~~~~~~~~~ 332 (1746)
||-.+|..+-|++
T Consensus 663 e~y~qLv~~~l~~ 675 (1640)
T KOG0262|consen 663 EDYQQLVFAGLSD 675 (1640)
T ss_pred HHHHHHHHHhhhh
Confidence 5666666666665
No 150
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=34.42 E-value=23 Score=31.60 Aligned_cols=30 Identities=30% Similarity=0.672 Sum_probs=21.7
Q ss_pred cccccccccccccCCCCCCCC--CcCCCCCCCCc
Q psy11166 374 KVKCGACGLVGHMRTNKACPQ--YSLTGQMPMNV 405 (1746)
Q Consensus 374 ~~~c~~cg~~ghm~tnk~CP~--Y~~~i~~Pmdl 405 (1746)
..+|-.||+.||+ --.||. --.+.++|...
T Consensus 4 ~~~CqkC~~~GH~--tyeC~~~~~r~y~~RpSrt 35 (42)
T PF13917_consen 4 RVRCQKCGQKGHW--TYECPNKNERKYTSRPSRT 35 (42)
T ss_pred CCcCcccCCCCcc--hhhCCCCCCcccccCCCHH
Confidence 5689999999999 457883 33345666664
No 151
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=33.55 E-value=17 Score=32.63 Aligned_cols=21 Identities=43% Similarity=0.904 Sum_probs=16.1
Q ss_pred cccccccccccccccCCCCCCCC
Q psy11166 372 DLKVKCGACGLVGHMRTNKACPQ 394 (1746)
Q Consensus 372 ~~~~~c~~cg~~ghm~tnk~CP~ 394 (1746)
.+...|..||..||.. +.||.
T Consensus 29 ~lp~~C~~C~~~gH~~--~~C~k 49 (49)
T PF14392_consen 29 RLPRFCFHCGRIGHSD--KECPK 49 (49)
T ss_pred CcChhhcCCCCcCcCH--hHcCC
Confidence 4566899999999964 56763
No 152
>KOG0699|consensus
Probab=29.24 E-value=71 Score=39.64 Aligned_cols=26 Identities=12% Similarity=-0.043 Sum_probs=13.2
Q ss_pred hccceeecCCCc-ceEEeeeeeeeeec
Q psy11166 1099 LSNSVLYNGPGS-QVLINIWWHFIEIK 1124 (1746)
Q Consensus 1099 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 1124 (1746)
+++||--+--|- .-|.|..+-.+.|+
T Consensus 477 ~D~CLAp~T~GDGTGCDNMT~ii~~Fk 503 (542)
T KOG0699|consen 477 CDACLAPSTDGDGTGCDNMTVIITTFK 503 (542)
T ss_pred HHhhcCCCCCCCCcCCCcceEEEEEec
Confidence 455555332222 33666666666665
No 153
>KOG2023|consensus
Probab=29.01 E-value=29 Score=45.69 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=36.8
Q ss_pred cccccccccCccChHHHHHHHhC--CC--CCCHHHHHHHHHHHHHHhccc-CCCCCHHHHHH-HHHHHHHHHHHHHHHHH
Q psy11166 653 FKDYYSVVQKPMDLETIGKKAQS--HK--YHSRYEFLADIELILSNSVLY-NGPGSQVTEKA-EKLLEEAKLALEKYDDH 726 (1746)
Q Consensus 653 vPDYyeIIKkPMDLsTIkkKL~s--~~--YkS~~EF~~DV~LIf~NA~tY-N~p~S~Iy~~A-~~Lqk~fek~l~el~~~ 726 (1746)
.|.+.+.+++|- -.|+.---. ++ --..+.|...+..-.++++.- |.++..+.+.. ..|.-+.+-..+++.+|
T Consensus 176 ipkfl~f~~h~s--pkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph 253 (885)
T KOG2023|consen 176 IPKFLQFFKHPS--PKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH 253 (885)
T ss_pred HHHHHHHHhCCC--hhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc
Confidence 688888888882 223321110 11 123344455555555555444 45555555432 33444444455566666
Q ss_pred HHH
Q psy11166 727 LTQ 729 (1746)
Q Consensus 727 l~q 729 (1746)
+..
T Consensus 254 l~~ 256 (885)
T KOG2023|consen 254 LDN 256 (885)
T ss_pred hHH
Confidence 654
No 154
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=27.62 E-value=37 Score=44.86 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=9.8
Q ss_pred hHHHHHhhhhHHhhhhhcccC
Q psy11166 1452 RKAARLVAAKCALAARVDAAH 1472 (1746)
Q Consensus 1452 ~KaaR~lAaK~aLAARvD~~~ 1472 (1746)
|+|-..+|..+..=.|.|+|-
T Consensus 579 g~aF~~aa~~~~a~~~~d~Fd 599 (622)
T PF02724_consen 579 GRAFQQAAEETGARVRHDSFD 599 (622)
T ss_pred HHHHHHHHHHhCCeEeccccc
Confidence 444444444444444455553
No 155
>smart00343 ZnF_C2HC zinc finger.
Probab=27.08 E-value=29 Score=27.12 Aligned_cols=18 Identities=44% Similarity=1.149 Sum_probs=14.6
Q ss_pred cccccccccccCCCCCCCCC
Q psy11166 376 KCGACGLVGHMRTNKACPQY 395 (1746)
Q Consensus 376 ~c~~cg~~ghm~tnk~CP~Y 395 (1746)
+|..||..||+. +.||..
T Consensus 1 ~C~~CG~~GH~~--~~C~~~ 18 (26)
T smart00343 1 KCYNCGKEGHIA--RDCPKX 18 (26)
T ss_pred CCccCCCCCcch--hhCCcc
Confidence 589999999987 578843
No 156
>PF06213 CobT: Cobalamin biosynthesis protein CobT; InterPro: IPR006538 These proteins are CobT subunits of the aerobic cobalt chelatase (aerobic cobalamin biosynthesis pathway). Pseudomonas denitrificans CobT has been experimentally characterised [, ]. Aerobic cobalt chelatase consists of three subunits, CobT, CobN (IPR003672 from INTERPRO) and CobS (IPR006537 from INTERPRO). Cobalamin (vitamin B12) can be complexed with metal via the ATP-dependent reactions (aerobic pathway) (e.g., in P. denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. However, aerobic cobalt chelatase subunits CobN and CobS are homologous to Mg-chelatase subunits BchH and BchI, respectively []. CobT, too, has been found to be remotely related to the third subunit of Mg-chelatase, BchD (involved in bacteriochlorophyll synthesis, e.g., in Rhodobacter capsulatus) []. Nomenclature note: CobT of the aerobic pathway P. denitrificans is not a homologue of CobT of the anaerobic pathway (Salmonella typhimurium, Escherichia coli). Therefore, annotation of any members of this family as nicotinate-mononucleotide--5,6-dimethylbenzimidazole phosphoribosyltransferases is erroneous.
Probab=24.69 E-value=9.5e+02 Score=28.93 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=15.0
Q ss_pred HHHHhhhhhcccCC--CCChHHHHHHHHHHHHHH
Q psy11166 564 DVNQIVENSTLYNG--AKSILTDAARRMLTLCVE 595 (1746)
Q Consensus 564 DVrLIF~NC~~YN~--~gS~I~k~A~~Lek~fee 595 (1746)
-+++-|++...++. +..+ .|+.|...++.
T Consensus 70 Al~lr~~D~~lh~~~~p~~~---~ar~lfn~lEq 100 (282)
T PF06213_consen 70 ALHLRHHDFKLHRRLRPQGP---VARALFNALEQ 100 (282)
T ss_pred HHHHHhcCHHHHHhhCCCCh---HHHHHHHHHHH
Confidence 35666777776643 2333 44444444443
No 157
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=23.08 E-value=29 Score=29.79 Aligned_cols=16 Identities=31% Similarity=0.631 Sum_probs=13.5
Q ss_pred ccccccccccccCCCC
Q psy11166 375 VKCGACGLVGHMRTNK 390 (1746)
Q Consensus 375 ~~c~~cg~~ghm~tnk 390 (1746)
+.|..||.++|+..+.
T Consensus 2 r~C~~Cg~~Yh~~~~p 17 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNP 17 (36)
T ss_dssp EEETTTTEEEETTTB-
T ss_pred cCcCCCCCccccccCC
Confidence 5799999999998775
No 158
>PHA02608 67 prohead core protein; Provisional
Probab=22.94 E-value=2.2e+02 Score=28.77 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11166 711 KLLEEAKLALEKYDDHLT 728 (1746)
Q Consensus 711 ~Lqk~fek~l~el~~~l~ 728 (1746)
...+.|...+..-...+.
T Consensus 15 ~akK~F~~~Me~rt~~li 32 (80)
T PHA02608 15 EAKKEFASIMEARTEALI 32 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666664443333
No 159
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=22.76 E-value=28 Score=46.94 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=0.0
Q ss_pred cccccccCCCCCCccc
Q psy11166 152 LGYSRGTIGKTGAGRI 167 (1746)
Q Consensus 152 ~G~g~GmlG~~gsGri 167 (1746)
+--.+|.||...+|.+
T Consensus 85 ~t~TlGtig~n~~~~~ 100 (787)
T PF03115_consen 85 ATATLGTIGSNTSGGL 100 (787)
T ss_dssp ----------------
T ss_pred EEEEEEeecCCCCCcc
Confidence 3445677876666655
No 160
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=22.75 E-value=1.5e+02 Score=39.09 Aligned_cols=129 Identities=16% Similarity=0.258 Sum_probs=66.9
Q ss_pred CCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCccchh--------ccCChHHHHH--HHHHHhCCcccCCCc--
Q psy11166 1220 ESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDT--------LVVSPLEYLR--TVRELGNDLDQTKNN-- 1287 (1746)
Q Consensus 1220 e~~pEy~lIVqan~L~~eID~EI~~ih~~lRe~Ys~rFPELes--------LV~~p~~Y~r--~V~~igN~ld~~k~~-- 1287 (1746)
+...+|..|+.+..= +.+.-.+.-.+--.|-++||+|.. ||-|...=+| .|+.|.. +.+.+
T Consensus 20 ~~~~~y~~il~~~kg----~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~---~ck~~~~ 92 (556)
T PF05918_consen 20 QHEEDYKEILDGVKG----SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQ---LCKDNPE 92 (556)
T ss_dssp GGHHHHHHHHHGGGS-----HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGG---G--T--T
T ss_pred cCHHHHHHHHHHccC----CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHH---HHHhHHH
Confidence 444699999998884 344556666777899999999976 3333222222 2333332 22221
Q ss_pred ------hHHHhhcchhhhhhhheeccccCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhcccCCchhH
Q psy11166 1288 ------ETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAF----ELNQFKTSIFEYVESRMTYIAPNLSA 1356 (1746)
Q Consensus 1288 ------e~L~~iL~~~timvVsv~AstS~G~~Lseedl~~I~~ac~~i~----~L~~~r~~i~~YVesRM~~IAPNLsA 1356 (1746)
.-|.++|..+....+.+ ...+.-.-|.-+-...+..+++.+. .-+..|..++.||..+|..+.+++..
T Consensus 93 ~v~kvaDvL~QlL~tdd~~E~~~-v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~ 170 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDDPVELDA-VKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLT 170 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS-
T ss_pred HHhHHHHHHHHHHhcccHHHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhh
Confidence 12444443322111110 0111111222222334456667775 44557999999999999999998876
No 161
>KOG0127|consensus
Probab=22.37 E-value=1.1e+02 Score=39.76 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=16.7
Q ss_pred ccCchhHHHHHHHHHhcCccccc
Q psy11166 868 VVDDDSQQAAEAMVQLGNITYYT 890 (1746)
Q Consensus 868 ~~Ddd~~~~~~~~~~~~~~~~~~ 890 (1746)
.-|--.+..++-.-|.|-+-|--
T Consensus 301 ~fD~tEEel~~~fskFG~v~ya~ 323 (678)
T KOG0127|consen 301 PFDTTEEELKEHFSKFGEVKYAI 323 (678)
T ss_pred CccccHHHHHHHHHhhccceeEE
Confidence 44556677788888888887754
No 162
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.73 E-value=51 Score=38.64 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=3.0
Q ss_pred ccccCccc
Q psy11166 851 DLEFSSEE 858 (1746)
Q Consensus 851 d~~~~d~d 858 (1746)
|.+||+++
T Consensus 57 Dsdf~~se 64 (240)
T PF05764_consen 57 DSDFDDSE 64 (240)
T ss_pred ccccCccc
Confidence 33333333
No 163
>PRK05978 hypothetical protein; Provisional
Probab=20.69 E-value=54 Score=36.23 Aligned_cols=28 Identities=21% Similarity=0.553 Sum_probs=22.6
Q ss_pred CCccccccccccccccc-----CCCCCCCCCcCC
Q psy11166 370 KPDLKVKCGACGLVGHM-----RTNKACPQYSLT 398 (1746)
Q Consensus 370 ~~~~~~~c~~cg~~ghm-----~tnk~CP~Y~~~ 398 (1746)
..-++.||.+||+ ||| +.+..||.....
T Consensus 29 ~rGl~grCP~CG~-G~LF~g~Lkv~~~C~~CG~~ 61 (148)
T PRK05978 29 WRGFRGRCPACGE-GKLFRAFLKPVDHCAACGED 61 (148)
T ss_pred HHHHcCcCCCCCC-CcccccccccCCCccccCCc
Confidence 3345899999997 888 888899998764
No 164
>KOG1991|consensus
Probab=20.48 E-value=44 Score=45.74 Aligned_cols=18 Identities=28% Similarity=0.515 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhcccC
Q psy11166 682 YEFLADIELILSNSVLYN 699 (1746)
Q Consensus 682 ~EF~~DV~LIf~NA~tYN 699 (1746)
-+|..|+...++|-.+|-
T Consensus 696 ~dyf~d~~~~l~N~vt~g 713 (1010)
T KOG1991|consen 696 IDYFTDMMPALHNYVTYG 713 (1010)
T ss_pred HHHHHHHHHHHhhheeeC
Confidence 444455555555554443
No 165
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=20.24 E-value=55 Score=27.85 Aligned_cols=23 Identities=39% Similarity=0.836 Sum_probs=18.3
Q ss_pred CCcccccccccccccccCCCCCCCC
Q psy11166 370 KPDLKVKCGACGLVGHMRTNKACPQ 394 (1746)
Q Consensus 370 ~~~~~~~c~~cg~~ghm~tnk~CP~ 394 (1746)
.|--.-.|..|++.||.. +.||+
T Consensus 4 ~pP~~Y~C~~C~~~GH~i--~dCP~ 26 (32)
T PF13696_consen 4 KPPPGYVCHRCGQKGHWI--QDCPT 26 (32)
T ss_pred CCCCCCEeecCCCCCccH--hHCCC
Confidence 344466999999999986 57998
Done!