Query psy11166
Match_columns 1746
No_of_seqs 861 out of 3140
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 19:45:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozb_B U4/U6 small nuclear rib 100.0 6.2E-76 2.1E-80 656.6 18.3 255 1214-1496 6-260 (260)
2 3icx_A PRE mRNA splicing prote 100.0 5.1E-72 1.8E-76 621.5 17.2 244 1225-1501 4-248 (255)
3 3pla_A NOP5, PRE mRNA splicing 100.0 7.2E-71 2.5E-75 639.1 14.4 334 1118-1501 23-381 (388)
4 2nnw_A NOP5/NOP56 related prot 100.0 4.3E-68 1.5E-72 616.6 18.8 348 1097-1495 8-376 (376)
5 3aad_A Transcription initiatio 100.0 1E-52 3.5E-57 477.8 24.8 289 451-744 3-291 (292)
6 1nt2_B Conserved hypothetical 100.0 1.5E-52 5.1E-57 465.2 8.3 221 1164-1496 32-257 (258)
7 3uv5_A Transcription initiatio 100.0 2.8E-50 9.5E-55 451.9 26.6 260 485-748 3-262 (265)
8 3gqu_A NOP5P protein; RNA bind 100.0 5.2E-42 1.8E-46 358.9 3.8 134 1332-1496 15-148 (169)
9 2r10_A Chromatin structure-rem 100.0 1.3E-39 4.5E-44 379.9 17.9 222 497-728 79-319 (361)
10 2r0y_A Chromatin structure-rem 100.0 1.3E-39 4.5E-44 373.3 15.4 220 499-728 31-269 (311)
11 3id6_A NOP5, PRE mRNA splicing 100.0 8.1E-33 2.8E-37 310.5 9.6 215 1118-1352 23-263 (268)
12 3uv5_A Transcription initiatio 99.9 2.5E-27 8.4E-32 266.3 15.5 110 618-728 10-119 (265)
13 3uv4_A Second bromodomain of h 99.9 3.6E-25 1.2E-29 232.6 13.1 133 616-748 23-155 (158)
14 3aad_A Transcription initiatio 99.9 3E-25 1E-29 252.7 13.3 104 619-723 44-147 (292)
15 3mqm_A Probable histone-lysine 99.9 8E-23 2.7E-27 206.8 12.2 113 495-607 8-122 (126)
16 3g0l_A Hwalp4, bromodomain adj 99.9 9.1E-23 3.1E-27 203.9 11.6 100 497-600 14-113 (117)
17 3mb4_A Protein polybromo-1; PB 99.9 5.1E-23 1.8E-27 207.9 9.7 106 496-601 15-122 (124)
18 3uv4_A Second bromodomain of h 99.9 5.8E-23 2E-27 215.9 10.0 119 492-613 25-143 (158)
19 2d9e_A Peregrin; four-helix bu 99.9 1.7E-22 5.8E-27 203.7 12.9 107 496-606 7-113 (121)
20 3ljw_A Protein polybromo-1; al 99.9 1.1E-22 3.9E-27 204.3 11.6 110 494-603 6-117 (120)
21 3d7c_A General control of amin 99.9 1.1E-22 3.8E-27 202.0 11.3 104 494-601 5-108 (112)
22 2dat_A Possible global transcr 99.9 1.4E-22 4.8E-27 204.6 12.0 106 495-600 12-119 (123)
23 2grc_A Probable global transcr 99.9 1.7E-22 5.7E-27 205.7 11.4 108 494-601 9-119 (129)
24 3k2j_A Protein polybromo-1; PB 99.9 2E-22 6.9E-27 205.6 11.6 114 489-602 10-125 (130)
25 2i7k_A Bromodomain-containing 99.9 3.9E-22 1.3E-26 200.2 12.3 102 494-599 6-107 (117)
26 3iu5_A Protein polybromo-1; PB 99.9 2.4E-22 8.1E-27 200.8 9.7 104 498-601 7-112 (116)
27 2oss_A HUNK1 protein, bromodom 99.9 5.2E-22 1.8E-26 201.7 12.0 102 495-600 20-123 (127)
28 3p1f_A CREB-binding protein; s 99.9 6.4E-22 2.2E-26 198.3 12.4 111 489-602 4-116 (119)
29 3nxb_A CAT eye syndrome critic 99.9 2.8E-22 9.7E-27 200.0 9.3 99 497-599 17-115 (116)
30 1e6i_A Transcriptional activat 99.9 4.9E-22 1.7E-26 200.2 11.1 101 499-603 16-116 (121)
31 3rcw_A Bromodomain-containing 99.9 1.1E-21 3.7E-26 200.7 13.0 108 496-607 13-120 (135)
32 4alg_A Bromodomain-containing 99.9 6.7E-22 2.3E-26 206.9 11.0 105 493-601 29-135 (154)
33 3mb3_A PH-interacting protein; 99.9 8.9E-22 3E-26 201.3 11.0 104 495-602 20-124 (135)
34 3d7c_A General control of amin 99.9 1.2E-21 4.1E-26 194.6 11.5 104 620-724 5-108 (112)
35 3hme_A Bromodomain-containing 99.9 1.2E-21 4.1E-26 197.9 11.4 102 496-601 13-114 (123)
36 2d9e_A Peregrin; four-helix bu 99.9 1.5E-21 5.3E-26 196.7 11.8 103 623-726 8-110 (121)
37 3q2e_A Bromodomain and WD repe 99.8 1.7E-21 6E-26 196.5 11.4 104 496-603 10-114 (123)
38 3p1f_A CREB-binding protein; s 99.8 2.7E-21 9.1E-26 193.8 12.6 107 620-726 9-117 (119)
39 3fkm_X Signaling protein; brom 99.8 4.2E-21 1.4E-25 203.1 14.1 112 622-734 21-135 (166)
40 2i7k_A Bromodomain-containing 99.8 3.3E-21 1.1E-25 193.5 12.0 104 619-723 5-108 (117)
41 2ouo_A HUNK1 protein, bromodom 99.8 1.7E-21 5.9E-26 198.6 9.4 102 498-600 24-127 (130)
42 3mqm_A Probable histone-lysine 99.8 4E-21 1.4E-25 194.4 11.8 95 637-731 29-123 (126)
43 3g0l_A Hwalp4, bromodomain adj 99.8 4.1E-21 1.4E-25 192.0 11.5 99 626-725 17-115 (117)
44 3ljw_A Protein polybromo-1; al 99.8 4.9E-21 1.7E-25 192.5 11.5 107 619-726 5-117 (120)
45 3q2e_A Bromodomain and WD repe 99.8 5.3E-21 1.8E-25 193.0 11.5 109 620-729 8-117 (123)
46 3rcw_A Bromodomain-containing 99.8 8.8E-21 3E-25 194.0 13.1 107 623-730 14-120 (135)
47 3tlp_A Protein polybromo-1; PB 99.8 2.2E-21 7.5E-26 201.6 8.8 104 498-601 26-132 (150)
48 2oss_A HUNK1 protein, bromodom 99.8 3.9E-21 1.3E-25 195.2 10.3 103 621-724 20-124 (127)
49 2yyn_A Transcription intermedi 99.8 2.4E-21 8.2E-26 198.6 8.5 99 497-600 21-121 (135)
50 3jvl_A Bromodomain-containing 99.8 2.4E-21 8.3E-26 194.4 8.2 103 497-600 10-114 (120)
51 1e6i_A Transcriptional activat 99.8 5.4E-21 1.8E-25 192.7 10.6 99 626-725 17-115 (121)
52 3fkm_X Signaling protein; brom 99.8 4.6E-21 1.6E-25 202.8 10.4 103 495-601 20-124 (166)
53 3mb3_A PH-interacting protein; 99.8 1E-20 3.5E-25 193.5 12.5 107 622-729 21-128 (135)
54 2grc_A Probable global transcr 99.8 7E-21 2.4E-25 193.7 11.1 90 637-726 32-121 (129)
55 3dai_A ATPase family AAA domai 99.8 1.5E-20 5.1E-25 191.5 12.7 115 622-737 10-129 (130)
56 2r10_A Chromatin structure-rem 99.8 2.4E-21 8.2E-26 226.5 7.6 87 514-600 227-313 (361)
57 3nxb_A CAT eye syndrome critic 99.8 7.3E-21 2.5E-25 189.9 10.0 95 627-722 21-115 (116)
58 4alg_A Bromodomain-containing 99.8 6.1E-21 2.1E-25 199.7 9.8 103 621-724 31-135 (154)
59 2r0y_A Chromatin structure-rem 99.8 1.4E-21 4.6E-26 224.7 5.3 192 380-600 48-263 (311)
60 2dat_A Possible global transcr 99.8 1.3E-20 4.5E-25 190.2 11.0 102 623-724 14-120 (123)
61 3dai_A ATPase family AAA domai 99.8 1.7E-20 5.8E-25 191.1 11.6 99 496-598 10-112 (130)
62 3k2j_A Protein polybromo-1; PB 99.8 2.8E-20 9.4E-25 189.9 12.6 106 620-726 15-126 (130)
63 3iu5_A Protein polybromo-1; PB 99.8 2E-20 6.7E-25 186.9 11.0 88 638-725 26-113 (116)
64 3hme_A Bromodomain-containing 99.8 1.7E-20 5.9E-25 189.5 10.4 100 623-723 14-113 (123)
65 3mb4_A Protein polybromo-1; PB 99.8 2E-20 6.9E-25 189.0 10.6 87 638-724 36-122 (124)
66 2ri7_A Nucleosome-remodeling f 99.8 1.3E-20 4.5E-25 199.2 8.8 99 498-600 74-172 (174)
67 3jvl_A Bromodomain-containing 99.8 1.5E-20 5.1E-25 188.7 8.4 97 628-725 15-116 (120)
68 2ouo_A HUNK1 protein, bromodom 99.8 2.6E-20 9E-25 189.9 9.4 98 627-725 27-129 (130)
69 2yyn_A Transcription intermedi 99.8 1.2E-19 4E-24 186.2 11.5 98 626-725 24-123 (135)
70 2ri7_A Nucleosome-remodeling f 99.8 1.6E-19 5.4E-24 190.9 9.2 96 627-723 77-172 (174)
71 3o36_A Transcription intermedi 99.8 1.2E-19 4.2E-24 193.8 8.2 100 496-600 81-182 (184)
72 3tlp_A Protein polybromo-1; PB 99.8 3.3E-19 1.1E-23 185.3 10.6 90 637-726 45-134 (150)
73 2dkw_A Hypothetical protein KI 99.8 7.7E-19 2.6E-23 179.6 10.7 96 494-598 10-109 (131)
74 2dkw_A Hypothetical protein KI 99.8 7.2E-19 2.5E-23 179.8 10.2 110 621-736 11-125 (131)
75 3o36_A Transcription intermedi 99.7 1.5E-18 5E-23 185.5 9.8 96 627-724 86-183 (184)
76 3u5n_A E3 ubiquitin-protein li 99.7 2E-18 6.8E-23 187.8 10.3 100 496-600 81-200 (207)
77 2ro1_A Transcription intermedi 99.7 2.8E-18 9.5E-23 184.9 10.0 95 498-601 78-177 (189)
78 3u5n_A E3 ubiquitin-protein li 99.7 1.5E-17 5E-22 181.0 9.8 97 627-725 86-202 (207)
79 2ro1_A Transcription intermedi 99.7 8E-18 2.7E-22 181.4 7.5 87 634-725 87-178 (189)
80 3iu6_A Protein polybromo-1; PB 99.7 2.6E-16 8.9E-21 163.6 11.9 102 495-600 6-109 (147)
81 3iu6_A Protein polybromo-1; PB 99.5 1.7E-14 5.8E-19 150.1 12.2 102 621-726 6-112 (147)
82 3lqh_A Histone-lysine N-methyl 99.1 5.5E-11 1.9E-15 128.1 7.7 93 496-603 75-167 (183)
83 3lqh_A Histone-lysine N-methyl 99.1 1.2E-10 4E-15 125.6 8.6 88 627-726 80-167 (183)
84 2ozb_B U4/U6 small nuclear rib 98.7 6.9E-09 2.4E-13 117.1 3.9 75 19-93 179-260 (260)
85 3gqu_A NOP5P protein; RNA bind 98.4 1E-07 3.5E-12 101.1 2.6 82 9-93 60-148 (169)
86 3icx_A PRE mRNA splicing prote 98.4 1.2E-07 4.2E-12 106.6 3.1 75 19-96 165-246 (255)
87 1nt2_B Conserved hypothetical 98.1 3.8E-07 1.3E-11 102.6 1.2 72 18-93 174-257 (258)
88 3pla_A NOP5, PRE mRNA splicing 98.1 8.4E-07 2.9E-11 104.6 2.6 74 20-96 299-379 (388)
89 2nnw_A NOP5/NOP56 related prot 97.8 7.2E-06 2.5E-10 96.8 2.7 70 19-92 299-376 (376)
90 4fp9_B Mterf domain-containing 47.4 5.8 0.0002 46.6 1.4 16 496-511 41-56 (335)
91 1nc8_A Nucleocapsid protein; H 46.0 8.2 0.00028 30.1 1.6 19 374-394 6-24 (29)
92 1u6p_A GAG polyprotein; MLV, A 45.7 18 0.0006 32.7 3.9 26 371-398 20-45 (56)
93 1dsq_A Nucleic acid binding pr 45.7 9 0.00031 29.2 1.7 19 375-395 3-21 (26)
94 1a6b_B Momulv, zinc finger pro 37.1 24 0.00081 29.9 3.1 25 371-397 7-31 (40)
95 4fbj_A CIF, hypothetical prote 35.6 10 0.00035 42.1 0.9 57 1367-1433 99-162 (261)
96 2a51_A Nucleocapsid protein; s 32.6 18 0.00062 29.7 1.7 17 375-393 22-38 (39)
97 2a51_A Nucleocapsid protein; s 30.6 21 0.0007 29.3 1.7 18 375-394 1-18 (39)
98 2ec7_A GAG polyprotein (PR55GA 27.5 19 0.00067 30.9 1.1 18 375-394 28-45 (49)
99 2ec7_A GAG polyprotein (PR55GA 26.7 31 0.0011 29.7 2.2 20 374-395 6-25 (49)
100 2li8_A Protein LIN-28 homolog 26.4 37 0.0013 31.9 2.9 19 374-394 24-42 (74)
101 3ts2_A Protein LIN-28 homolog 22.6 35 0.0012 35.8 2.1 19 375-395 120-138 (148)
102 2bl6_A Nucleocapsid protein P1 22.3 36 0.0012 27.6 1.7 17 376-394 2-18 (37)
103 2cqf_A RNA-binding protein LIN 20.5 37 0.0013 30.7 1.6 21 374-396 29-49 (63)
No 1
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=100.00 E-value=6.2e-76 Score=656.64 Aligned_cols=255 Identities=67% Similarity=1.051 Sum_probs=235.3
Q ss_pred CccCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCccchhccCChHHHHHHHHHHhCCcccCCCchHHHhh
Q psy11166 1214 PIVGPVESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGNDLDQTKNNETLQQV 1293 (1746)
Q Consensus 1214 ~~~g~~e~~pEy~lIVqan~L~~eID~EI~~ih~~lRe~Ys~rFPELesLV~~p~~Y~r~V~~igN~ld~~k~~e~L~~i 1293 (1746)
.+.|+++++|||++|||||+|+++||+|||.+||||||||+||||||++||+||++|+++|+.|||+.+.+++.++|.++
T Consensus 6 ~~~~~~e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~lv~~~~~Y~~~V~~ig~~~~~~~~~~~L~~i 85 (260)
T 2ozb_B 6 EVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQI 85 (260)
T ss_dssp ------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTTCTTGGGT
T ss_pred cccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHHHhcCHHHHHHHHHHhCCchhhccchHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999998877666679999
Q ss_pred cchhhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHhchHHHHHHHHHhCCC
Q psy11166 1294 LTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGL 1373 (1746)
Q Consensus 1294 L~~~timvVsv~AstS~G~~Lseedl~~I~~ac~~i~~L~~~r~~i~~YVesRM~~IAPNLsALVG~~vAArLI~~AGGL 1373 (1746)
|+++++|+|+++|++|+|.+||++|+.+|..+|+++++|+++|++|.+||++||..||||||+|||+.||||||++||||
T Consensus 86 L~~~~~~~i~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~~vaArLI~~AGsL 165 (260)
T 2ozb_B 86 LTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGL 165 (260)
T ss_dssp SCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSH
T ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcCCccccccCCCchhhhhhcccccccccccccCCCCceEEEecccccccCchhhHHHhhhhhcCCchhhHhH
Q psy11166 1374 SRLSKMPGVAGGLSRLSKMPACNILLQGAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRK 1453 (1746)
Q Consensus 1374 ~~~~~~~~~~~~~~~LAkmPAcNIq~LGAeK~l~~glst~~~~pk~G~Iy~s~lVq~~P~~~~~~~~~~~~~~~~~~r~K 1453 (1746)
.+||||||||||+|||+|++|+||++++++|||||||||++||++|+ ++|||
T Consensus 166 -------------~~Lak~PastiqiLGaeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~---------------~~rgk 217 (260)
T 2ozb_B 166 -------------TNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPP---------------DLRRK 217 (260)
T ss_dssp -------------HHHHTSCHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCG---------------GGHHH
T ss_pred -------------HHHhhCCcHHHHHhcccHHHHHhhccCCCCCCeeeEeCCHHHhhCCH---------------HHHHH
Confidence 99999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHhhhhHHhhhhhcccCCCCCCcccHHHHHHHHHHHHHhcC
Q psy11166 1454 AARLVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTE 1496 (1746)
Q Consensus 1454 aaR~lAaK~aLAARvD~~~~~~dg~~G~~lreeIe~kl~Kl~E 1496 (1746)
|+|+||+||+||||||+|+++++|.+|.+||++|++||+||+|
T Consensus 218 ~~R~lA~K~alAaRiD~~~~~~~~~~G~~lr~~ie~rl~~~~e 260 (260)
T 2ozb_B 218 AARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE 260 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSTTSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999987
No 2
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.1e-72 Score=621.48 Aligned_cols=244 Identities=30% Similarity=0.459 Sum_probs=214.8
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCccchhccCChHHHHHHHHHHhCCcccCCCchHHHhh-cchhhhhhhh
Q psy11166 1225 YQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGNDLDQTKNNETLQQV-LTQATIMVVS 1303 (1746)
Q Consensus 1225 y~lIVqan~L~~eID~EI~~ih~~lRe~Ys~rFPELesLV~~p~~Y~r~V~~igN~ld~~k~~e~L~~i-L~~~timvVs 1303 (1746)
+++|||||+|+++||+|||++||||||||+||||||++||+||++|+++|+.|||+.|.+ .++|.++ |+.+++++|+
T Consensus 4 D~~Iiqai~lld~iDkein~~~~rvrewY~~~FPEL~~iv~d~~~Yak~V~~ig~~~~~~--~~~l~~l~l~~~~~~~i~ 81 (255)
T 3icx_A 4 DLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLT--IDSLKELGFNEQRINRIL 81 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHCCCHHHHHHHHHHTCSGGGCC--HHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcchHhhcCCHHHHHHHHHHHcCCCCCC--hhhHHHccCCHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999998865 3558888 8999999999
Q ss_pred eeccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHhchHHHHHHHHHhCCCccccCCCCcC
Q psy11166 1304 VTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVA 1383 (1746)
Q Consensus 1304 v~AstS~G~~Lseedl~~I~~ac~~i~~L~~~r~~i~~YVesRM~~IAPNLsALVG~~vAArLI~~AGGL~~~~~~~~~~ 1383 (1746)
++|++|+|.+||++|+.+|..+|+++++|+++|++|.+||++||..||||||+|||+.||||||++||||
T Consensus 82 ~aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL---------- 151 (255)
T 3icx_A 82 DAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSL---------- 151 (255)
T ss_dssp HHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHHHHHHHHHHHSSH----------
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhccHHHHHHHHHcCCH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCchhhhhhcccccccccccccCCCCceEEEecccccccCchhhHHHhhhhhcCCchhhHhHHHHHhhhhHH
Q psy11166 1384 GGLSRLSKMPACNILLQGAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCA 1463 (1746)
Q Consensus 1384 ~~~~~LAkmPAcNIq~LGAeK~l~~glst~~~~pk~G~Iy~s~lVq~~P~~~~~~~~~~~~~~~~~~r~KaaR~lAaK~a 1463 (1746)
++||||||||||+|||+|++|+||++++.+|||||||||++||++|+ ++||||+|+||+||+
T Consensus 152 ---~~LAk~PAstIqiLGAeKalfr~lkt~~~tPk~G~Iy~s~~V~~ap~---------------~~rgkiaR~LAaK~a 213 (255)
T 3icx_A 152 ---DELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPR---------------WQRGKIARALAAKLA 213 (255)
T ss_dssp ---HHHTTSCHHHHTTCC-------------------GGGGSHHHHTSCG---------------GGHHHHHHHHHHHHH
T ss_pred ---HHHhhCChHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhcCCH---------------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hhhhhcccCCCCCCcccHHHHHHHHHHHHHhcCCCCCC
Q psy11166 1464 LAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVK 1501 (1746)
Q Consensus 1464 LAARvD~~~~~~dg~~G~~lreeIe~kl~Kl~EpP~~k 1501 (1746)
||||||+|++ ..+|.+||++|++||+||+||....
T Consensus 214 LAARiD~~~g---~~~G~~lre~ie~ri~kl~e~~~~~ 248 (255)
T 3icx_A 214 IAARVDAFSG---RFIGDQLNEQLKKRIDEIKEKFAQH 248 (255)
T ss_dssp HHHHHHHTTC---CCCHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHhhcccCC---cccCHHHHHHHHHHHHHHhCccccc
Confidence 9999999974 3569999999999999999997543
No 3
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=100.00 E-value=7.2e-71 Score=639.08 Aligned_cols=334 Identities=25% Similarity=0.366 Sum_probs=279.4
Q ss_pred eeeeeecCcc--cccccccccccc-----hhcccCccccCCCcccccceeeccCCccchhh--hhhhcccccccHHHHHh
Q psy11166 1118 WHFIEIKSSF--KTNNVQILSGGF-----HSLCGSSRSIEPNTRQSRNVWHGSGNLKTLTS--TLFYFVFQAKSIHQIAK 1188 (1746)
Q Consensus 1118 ~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~g~~k~~~~--~l~~~~~~~~~v~~iak 1188 (1746)
+-|..|+.+. +++|++-+++|. ..+++... | . -+||.|.|-..+ ++|.+|... ....|..
T Consensus 23 ~~~~~f~~s~~~ale~~~~i~eg~~~~~L~~fL~~~~---~-----~--~l~V~d~~L~~~i~~~~~~~~~~-~~~~~~~ 91 (388)
T 3pla_A 23 VDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVN---P-----Q--EVVVENEAEVPKLQALGYRVSYE-PYSKVSR 91 (388)
T ss_dssp EEEEECCSCHHHHHHHHHHHHTTCCCHHHHHHHHHSC---C-----S--EEEESCTTTHHHHHHTTCEEEEC-TTCHHHH
T ss_pred EeecCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHhC---C-----C--eEEEECHHHHHHHHHcCCCeeec-CchHHHH
Confidence 4556665332 579999888887 44555444 3 1 269999995444 358988732 2222333
Q ss_pred ccC---------------chhHHHHHHHHHHHHhccCCCCCccCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q psy11166 1189 LRN---------------SEQLQNVMTSIEKYQKSNQSQAPIVGPVESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKY 1253 (1746)
Q Consensus 1189 L~~---------------s~~~~~vm~~I~~~~~~~~~~~~~~g~~e~~pEy~lIVqan~L~~eID~EI~~ih~~lRe~Y 1253 (1746)
+.+ ...|...+..+-+...... + ....+-.+++|||||+|+++||+|||++||||||||
T Consensus 92 ~iR~~~~~~~~~~g~~~~~~d~~~~~~~l~~~~sr~k----v--k~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY 165 (388)
T 3pla_A 92 IFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRK----L--RSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWY 165 (388)
T ss_dssp HHHHTTTTHHHHTTSSSSSHHHHHHHHHHHHHHHHHH----H--HHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHhHhcCCCCChHHHHHHHHHHHHHHHHHH----H--hhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2334444444433322210 1 012345789999999999999999999999999999
Q ss_pred hccCccchhccCChHHHHHHHHHHhCCcccCCCchHHHhh-cchhhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy11166 1254 NKRFPELDTLVVSPLEYLRTVRELGNDLDQTKNNETLQQV-LTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFEL 1332 (1746)
Q Consensus 1254 s~rFPELesLV~~p~~Y~r~V~~igN~ld~~k~~e~L~~i-L~~~timvVsv~AstS~G~~Lseedl~~I~~ac~~i~~L 1332 (1746)
+||||||++||+||++|+++|+.|||+.+.+. ++|.++ |+.+++++|+++|++|||.+||++|+.+|..+|+++++|
T Consensus 166 ~~hFPEL~~iV~d~~~Yak~V~~ignr~~~~~--~~l~~l~l~~~~~~~I~~aA~~SmG~~ls~~dl~~I~~~~~~v~~L 243 (388)
T 3pla_A 166 SIHFPELDKLIEDHEEYATIVSRFGDRGFLTI--DSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDL 243 (388)
T ss_dssp TTTCGGGTTTCCCHHHHHHHHHHTCSGGGCCH--HHHHTTTCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hccCcchhhhcCCHHHHHHHHHHhcCcccCCh--hhHhhcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988653 458888 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCchhHHhchHHHHHHHHHhCCCccccCCCCcCCccccccCCCchhhhhhcccccccccccc
Q psy11166 1333 NQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQKKLLSGFSQ 1412 (1746)
Q Consensus 1333 ~~~r~~i~~YVesRM~~IAPNLsALVG~~vAArLI~~AGGL~~~~~~~~~~~~~~~LAkmPAcNIq~LGAeK~l~~glst 1412 (1746)
+++|++|.+||++||..||||||+|||+.||||||++|||| ++||||||||||+|||+|++|+||++
T Consensus 244 ~e~R~~L~~Yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL-------------~~LAK~PAstIQiLGAeKalfr~Lkt 310 (388)
T 3pla_A 244 YNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSL-------------DELAKMPASTIQVLGAEKALFRALRS 310 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSH-------------HHHHTSCHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcHHHHhccHHHHHHHHHcCCH-------------HHHhhCChHHHHHhhhhhHHHHHhcc
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCCCceEEEecccccccCchhhHHHhhhhhcCCchhhHhHHHHHhhhhHHhhhhhcccCCCCCCcccHHHHHHHHHHHH
Q psy11166 1413 TSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLD 1492 (1746)
Q Consensus 1413 ~~~~pk~G~Iy~s~lVq~~P~~~~~~~~~~~~~~~~~~r~KaaR~lAaK~aLAARvD~~~~~~dg~~G~~lreeIe~kl~ 1492 (1746)
++.+|||||||||++||++|+ ++||||+|+||+|||||||||+|++ ..+|.+||++|++||+
T Consensus 311 ~~~tPk~G~Iy~s~~V~~ap~---------------~~rgKiaR~LAaK~aLAARiD~~~g---~~~G~~lreeie~ri~ 372 (388)
T 3pla_A 311 GGRPPKHGIIFQYPAIHTSPR---------------WQRGKIARALAAKLAIAARVDAFSG---RFIGDQLNEQLKKRID 372 (388)
T ss_dssp TCCCCSCSGGGGSHHHHHSCH---------------HHHHHHHHHHHHHHHHHHHHHHTCC---CCCHHHHHHHHHHHHH
T ss_pred CCCCCCeeEEecCHhhhhCCH---------------HHhHHHHHHHHHHHHHHHhhcccCC---cccCHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999974 3579999999999999
Q ss_pred HhcCCCCCC
Q psy11166 1493 KLTEPPPVK 1501 (1746)
Q Consensus 1493 Kl~EpP~~k 1501 (1746)
+|+||....
T Consensus 373 kl~e~~~~~ 381 (388)
T 3pla_A 373 EIKEKFAQH 381 (388)
T ss_dssp HHHCC----
T ss_pred HHhCccccc
Confidence 999996543
No 4
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=100.00 E-value=4.3e-68 Score=616.61 Aligned_cols=348 Identities=22% Similarity=0.300 Sum_probs=269.4
Q ss_pred hhhccceeecCC-Cc-ce--EEeeeeeeeeecCcc-cccccccccccc-----hhcccCccccCCCcccccceeeccCCc
Q psy11166 1097 LILSNSVLYNGP-GS-QV--LINIWWHFIEIKSSF-KTNNVQILSGGF-----HSLCGSSRSIEPNTRQSRNVWHGSGNL 1166 (1746)
Q Consensus 1097 ~~~~~~~~~~~~-~~-~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~g~~ 1166 (1746)
+|+-++.+|.-| |. .+ --|+ .+|.-|++.+ +++| ++++|. ..+++. . | .+.+.-|||.|.
T Consensus 8 ~~~~k~~l~~~~~G~~~~~e~g~~-~~~~~f~~~~~al~~--~~~eg~~~~~l~~~l~~-~---~---~~~~~~l~v~d~ 77 (376)
T 2nnw_A 8 VMIMKAFISENVRGIYAFDENGNL-IEKRYFTDKPEKVLD--QLLKGEITKDLEELLNS-L---K---EKGYDEFVFEHP 77 (376)
T ss_dssp ------CEEECSSEEEEBCSSSCB-CCCEECSSCHHHHHH--HHTTTCCCHHHHHHHHH-H---H---TTTCCCEEESSH
T ss_pred HHHHHHHHHhccceeEEEcCCCce-EeeeeCCChHHHHHH--HHHcCCCCHHHHHHHHh-c---c---cccCeEEEEcCH
Confidence 345566665533 33 11 1234 4666666533 2333 335554 344443 2 2 223467899999
Q ss_pred cchhh--hhhhccc--ccccHHHHH-----hccCchhHHHHHHHHHHHHhccCCCCCccCCCCCCcchhHHHHHHHhHHH
Q psy11166 1167 KTLTS--TLFYFVF--QAKSIHQIA-----KLRNSEQLQNVMTSIEKYQKSNQSQAPIVGPVESDPEYQLIVEANNLAVE 1237 (1746)
Q Consensus 1167 k~~~~--~l~~~~~--~~~~v~~ia-----kL~~s~~~~~vm~~I~~~~~~~~~~~~~~g~~e~~pEy~lIVqan~L~~e 1237 (1746)
|...+ ++|.+|. ....|.++. +|. ...+...+..+-+...... + ....+..|++|||||+++++
T Consensus 78 ~l~~~i~~~~~~~~~~~~~~~~~~~R~~~~~l~-~~d~~~~~~~l~h~~sr~K----v--k~~~~k~D~~Iiqai~lldd 150 (376)
T 2nnw_A 78 ELSRRAKELGFSATTEFPNIAGERLRSNPEEFL-GENWFEEYYKVGVALTRMR----I--QEQSGARDKMVIQAIEALDD 150 (376)
T ss_dssp HHHHHHHTTTCCEEECTTCHHHHHHHHCTHHHH-CSSHHHHHHHHHHHHHHHH----S--CCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCceeeecCcHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhh----h--ccCCCcchHHHHHHHHHHHH
Confidence 94333 2788886 333333333 222 3456666666665544321 1 13456789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCccchhccCChHHHHHHHHHHhCCcccCCCchHHHhh-cchhhhhhhheeccccCCCCCCH
Q psy11166 1238 IDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGNDLDQTKNNETLQQV-LTQATIMVVSVTASTTQGQLLSE 1316 (1746)
Q Consensus 1238 ID~EI~~ih~~lRe~Ys~rFPELesLV~~p~~Y~r~V~~igN~ld~~k~~e~L~~i-L~~~timvVsv~AstS~G~~Lse 1316 (1746)
||+|||.+|+||||||+||||||++||+||.+|+++|+.|||+.+.+. ++|.++ |+++++|+|+++|++|+|.+||+
T Consensus 151 lDkeIn~~~~rlrewY~~~FPEL~~lV~d~~~Y~k~V~~ig~~~~l~~--~~L~~i~l~~~~~~~I~~aA~~S~G~~ls~ 228 (376)
T 2nnw_A 151 VDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINE--EVLRELGLSEEKIKKILEAKEKTMGAWMDQ 228 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHTCSGGGCCS--HHHHHTTCCHHHHHHHHHHHHHCCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHccCccHHhhcCCHHHHHHHHHHhCCccccCH--hhHHHcCCCHHHHHHHHHHHHhcCCCCCCH
Confidence 999999999999999999999999999999999999999999988753 469999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHhchHHHHHHHHHhCCCccccCCCCcCCccccccCCCchh
Q psy11166 1317 EELSEVYQACDMAFELNQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACN 1396 (1746)
Q Consensus 1317 edl~~I~~ac~~i~~L~~~r~~i~~YVesRM~~IAPNLsALVG~~vAArLI~~AGGL~~~~~~~~~~~~~~~LAkmPAcN 1396 (1746)
+|+.+|..+|+++++|+++|++|.+||++||..||||||+|||+.||||||++|||| ++||||||||
T Consensus 229 ~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAPNLsaLvG~~vaArLIs~AGgL-------------~~LAK~PAst 295 (376)
T 2nnw_A 229 TDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGL-------------RELAMMPSST 295 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSH-------------HHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhChHHHHHHHHHhCCH-------------HHHhhCChHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhhhcccccccccccccCCCCceEEEecccccccCchhhHHHhhhhhcCCchhhHhHHHHHhhhhHHhhhhhcccCCCCC
Q psy11166 1397 ILLQGAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVD 1476 (1746)
Q Consensus 1397 Iq~LGAeK~l~~glst~~~~pk~G~Iy~s~lVq~~P~~~~~~~~~~~~~~~~~~r~KaaR~lAaK~aLAARvD~~~~~~d 1476 (1746)
||+|||+|++|+||++++.+|||||||||++||++|+ ++||||+|+||||||||||||+|+
T Consensus 296 IQiLGAeKalf~~lkt~~~tPk~G~Iy~s~~V~~ap~---------------~~kgKiaR~LAaK~aLAARiD~~~---- 356 (376)
T 2nnw_A 296 IQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPW---------------WQRGKIARALAGKLAIAARVDYFS---- 356 (376)
T ss_dssp HHTTTCC-------------CCCCGGGGSHHHHTSCH---------------HHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHhccchhhHHHhccCCCCCCceEEeCCHhhccCCH---------------HHHHHHHHHHHHHHHHHHHHhhcC----
Confidence 9999999999999999999999999999999999999 999999999999999999999994
Q ss_pred Ccc-cHHHHHHHHHHHHHhc
Q psy11166 1477 GAI-GRSFREDIEKKLDKLT 1495 (1746)
Q Consensus 1477 g~~-G~~lreeIe~kl~Kl~ 1495 (1746)
|.+ |..+|++|++||++|.
T Consensus 357 g~~~G~~lre~ie~rl~~ik 376 (376)
T 2nnw_A 357 GEYIAEELKKELEARIREIK 376 (376)
T ss_dssp CCCCHHHHHHHHHHHHHHHC
T ss_pred CcccCHHHHHHHHHHHHHhC
Confidence 566 9999999999999983
No 5
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=100.00 E-value=1e-52 Score=477.76 Aligned_cols=289 Identities=56% Similarity=0.880 Sum_probs=251.9
Q ss_pred hhccCCChhhhhcccccCCCCCCCchhhhhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhccccCCCccccccCCCCCCC
Q psy11166 451 SLLLKVPKEALHAKKKRKANNPDNQLDYLKRHQKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLV 530 (1746)
Q Consensus 451 Sl~lk~PKe~i~~KKRRr~~~pdeeld~l~r~~k~~kRRradp~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~ 530 (1746)
.+.+++|++...+||||+... ..+++|+.++.+..+||+.+|.+.+..+|..|++.|+.+ +.++||+.||+++.+
T Consensus 3 ~~~~~~~k~~~~~kk~rr~~~-~~~~d~~~~~~~~~~rr~~~p~~~l~~~~~~il~~l~~~----~~a~~F~~pV~~~~~ 77 (292)
T 3aad_A 3 HMVLKFPKQQLPPKKKRRVGT-TVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDL----PNTYPFHTPVNAKVV 77 (292)
T ss_dssp -------------CCCCCSSC-SCCCCC------------CCHHHHHHHHHHHHHHHHSSS----TTCGGGSSSCCTTTS
T ss_pred ceEEecchhhcCccccCCCCC-CCCCccccCCcccccccccChHHHHHHHHHHHHHHHHhC----CcchhhcCCCCchhc
Confidence 567888999887777776655 357899999999999999999999999999999998765 789999999999999
Q ss_pred CCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHHHhhhhHHHHHHhhhh
Q psy11166 531 PDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELLMRLEKA 610 (1746)
Q Consensus 531 PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek~fee~lke~Ee~l~rLEka 610 (1746)
||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||+++|.++.+|..|++.|.+.+++.++.+.++++.
T Consensus 78 pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~~~~~~e~~ 157 (292)
T 3aad_A 78 KDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKA 157 (292)
T ss_dssp TTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHHHTHHHHTTTTTGGGSHHHHHHHHHT
T ss_pred ccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhhcchhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhHhhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHH
Q psy11166 611 INPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIEL 690 (1746)
Q Consensus 611 InPlldDnDq~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~L 690 (1746)
++|+.++++++++++++.+++..+++.++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|
T Consensus 158 i~Pl~dd~~~~~~~~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~L 237 (292)
T 3aad_A 158 INPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 237 (292)
T ss_dssp TSSSTTCHHHHHHHHHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy11166 691 ILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQ 744 (1746)
Q Consensus 691 If~NA~tYN~p~S~Iy~~A~~Lqk~fek~l~el~~~l~qlE~~I~~~~e~a~ee 744 (1746)
||.||++||+++|.+|.+|..|++.|...+.++.+++.+++.+|...++++.++
T Consensus 238 i~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~~l~~le~~i~~~~~~~~~~ 291 (292)
T 3aad_A 238 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEE 291 (292)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999888754
No 6
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=100.00 E-value=1.5e-52 Score=465.23 Aligned_cols=221 Identities=25% Similarity=0.378 Sum_probs=176.3
Q ss_pred CCccchhhhhhhcccccccHHHHHhccCchhHHHHHHHHHHHHhccCCCCCccCCCCCCcchhHHHHHHHhHHHHHHHHH
Q psy11166 1164 GNLKTLTSTLFYFVFQAKSIHQIAKLRNSEQLQNVMTSIEKYQKSNQSQAPIVGPVESDPEYQLIVEANNLAVEIDTEIG 1243 (1746)
Q Consensus 1164 g~~k~~~~~l~~~~~~~~~v~~iakL~~s~~~~~vm~~I~~~~~~~~~~~~~~g~~e~~pEy~lIVqan~L~~eID~EI~ 1243 (1746)
.|...++.+.|+.. +...|.+.|..+.+...... + ..+.+.+|++|||||+|+++||+|||
T Consensus 32 ~~~~~~~~~~g~~~-------------~~~~y~~~l~~~~~~~sr~k----v--k~~~~~~D~~Iiqai~lld~idkein 92 (258)
T 1nt2_B 32 SPLPFNVSEVGAKA-------------LGKDYYRILRKTALAVSEKM----V--EKELRREDRYVVALVKALEEIDESIN 92 (258)
T ss_dssp SCCSSCHHHHHHTT-------------SCSTHHHHHHHHHHHHHHHH----H--HHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHhheeC-------------CHHHHHHHHHHHHHHHHHHH----H--hcCCCcccHHHHHHHHHHHHHHHHHH
Confidence 45556666666521 12456666666654332210 1 02345799999999999999999999
Q ss_pred HHHHHHHHHhhccCccchhccCChHHHHHHHHHHhCCcccCCCchHHHhhcchhhhhhhheeccccCCCCCCHHHHHHHH
Q psy11166 1244 LIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGNDLDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVY 1323 (1746)
Q Consensus 1244 ~ih~~lRe~Ys~rFPELesLV~~p~~Y~r~V~~igN~ld~~k~~e~L~~iL~~~timvVsv~AstS~G~~Lseedl~~I~ 1323 (1746)
.+|+||||||+| .+| +||+
T Consensus 93 ~~~~rvrewY~~---------------------------------------------------~~S---~ise------- 111 (258)
T 1nt2_B 93 MLNEKLEDIRAV---------------------------------------------------KES---EITE------- 111 (258)
T ss_dssp HTTTTHHHHHTT---------------------------------------------------CCC---TTHH-------
T ss_pred HHHHHHHHHhCC---------------------------------------------------CCC---cCCH-------
Confidence 999999999996 011 4554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCchhHHhchHHHHHHHHHhCCCccccCCCCcCCccccccCCCchhhhhhccc
Q psy11166 1324 QACDMAFELNQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQ 1403 (1746)
Q Consensus 1324 ~ac~~i~~L~~~r~~i~~YVesRM~~IAPNLsALVG~~vAArLI~~AGGL~~~~~~~~~~~~~~~LAkmPAcNIq~LGAe 1403 (1746)
.+|+++++|+++|++|.+||++||..||||||+|||+.||||||++|||| ++||||||||||+|||+
T Consensus 112 ~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~vaArLI~~AGgL-------------~~LAk~PAstIqiLGAe 178 (258)
T 1nt2_B 112 KFEKKIRELRELRRDVEREIEEVMEKIAPNMTELVGAKVAAKLLERAGSM-------------ERLVRLPASKIQVIGAE 178 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHHHHHHHHHHHCSH-------------HHHHTCCHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCcHHHHHHHHHhCCH-------------HHHhhCCHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred ccccccc---ccc--CCCCceEEEecccccccCchhhHHHhhhhhcCCchhhHhHHHHHhhhhHHhhhhhcccCCCCCCc
Q psy11166 1404 KKLLSGF---SQT--SVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGA 1478 (1746)
Q Consensus 1404 K~l~~gl---st~--~~~pk~G~Iy~s~lVq~~P~~~~~~~~~~~~~~~~~~r~KaaR~lAaK~aLAARvD~~~~~~dg~ 1478 (1746)
|++|+|| +++ +++|||||||||++||++|+ ++|+||+|+||+||+||||||+|+ |.
T Consensus 179 Kalf~~l~~~~t~~~~~~pk~G~Iy~s~~V~~ap~---------------~~rgK~aR~LAaK~aLAARiD~~~----g~ 239 (258)
T 1nt2_B 179 KSLYKAFARMKKGKKAKIPKHGIIFLHPFIRTLPK---------------AKRGKMARFLAAKLAIAAKIDYFR----GE 239 (258)
T ss_dssp --------------------CCGGGGSHHHHTSCS---------------SSSHHHHHHHHHHHHHHHHHHHHT----CS
T ss_pred hHHHhhhhccccccCCCCCCcceEecCHHHhcCCH---------------HHHHHHHHHHHHHHHHHHHHHhhC----Cc
Confidence 9999999 888 89999999999999999999 999999999999999999999995 68
Q ss_pred ccHHHHHHHHHHHHHhcC
Q psy11166 1479 IGRSFREDIEKKLDKLTE 1496 (1746)
Q Consensus 1479 ~G~~lreeIe~kl~Kl~E 1496 (1746)
+|.+||++|++||+||+|
T Consensus 240 ~G~~lre~ie~rl~k~~e 257 (258)
T 1nt2_B 240 IDESLYESIRRRYEELRR 257 (258)
T ss_dssp CCTHHHHHHHHHHHHCC-
T ss_pred ccHHHHHHHHHHHHHHhh
Confidence 999999999999999998
No 7
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=100.00 E-value=2.8e-50 Score=451.90 Aligned_cols=260 Identities=57% Similarity=0.903 Sum_probs=247.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHH
Q psy11166 485 PANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLAD 564 (1746)
Q Consensus 485 ~~kRRradp~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aD 564 (1746)
+.+||+.++.+.|..+|+.|+..|..+ +.++||+.||+++.+||||++|++||||+||++||+++.|.++++|.+|
T Consensus 3 s~~Rrr~~~~~~l~~~l~~il~~l~~~----~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D 78 (265)
T 3uv5_A 3 SIHRRRTDPMVTLSSILESIINDMRDL----PNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREH 78 (265)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHTS----TTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHHcC----CCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHH
Confidence 356788889999999999999999876 7799999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcccCCCCChHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCCCCCCchhHhhhhhHHHHHHHHhhcCCccccc
Q psy11166 565 VNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIF 644 (1746)
Q Consensus 565 VrLIF~NC~~YN~~gS~I~k~A~~Lek~fee~lke~Ee~l~rLEkaInPlldDnDq~aLS~IL~eIV~~kLk~~~~S~PF 644 (1746)
|+|||.||++||+++|.++.+|..|++.|++.+++.+..+.++++.++|+.+++++.+++.++..++..+++.++.+|||
T Consensus 79 ~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~~ek~i~p~~dd~~~~~~~~il~~i~~~~l~~~~~~~~F 158 (265)
T 3uv5_A 79 LELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPF 158 (265)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSTTTTCHHHHHHHHHHHHHHHHTTTTSTTCGGG
T ss_pred HHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHHhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11166 645 IKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYD 724 (1746)
Q Consensus 645 ~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fek~l~el~ 724 (1746)
..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||+++|.+|.+|..|++.|...+.++.
T Consensus 159 ~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~ 238 (265)
T 3uv5_A 159 HHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 238 (265)
T ss_dssp TSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred hCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccCCC
Q psy11166 725 DHLTQLEKTISQVRARAMEQADVD 748 (1746)
Q Consensus 725 ~~l~qlE~~I~~~~e~a~eeaded 748 (1746)
+.+.+++.++...++++.++++.+
T Consensus 239 ~~~~~~e~~i~~~~e~~~~~~~~~ 262 (265)
T 3uv5_A 239 EHLTQLEKDICTAKEAALEEAELE 262 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhHHHHHHHHhhhhh
Confidence 999999999999998888776654
No 8
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=100.00 E-value=5.2e-42 Score=358.93 Aligned_cols=134 Identities=31% Similarity=0.500 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhhhcccCCchhHHhchHHHHHHHHHhCCCccccCCCCcCCccccccCCCchhhhhhccccccccccc
Q psy11166 1332 LNQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQKKLLSGFS 1411 (1746)
Q Consensus 1332 L~~~r~~i~~YVesRM~~IAPNLsALVG~~vAArLI~~AGGL~~~~~~~~~~~~~~~LAkmPAcNIq~LGAeK~l~~gls 1411 (1746)
+-..|..|.+||++||..||||||+|||+.||||||++|||| .+||||||||||+|||+|++|+||+
T Consensus 15 ~~~~~~~L~~Yl~srM~~iAPNLsaLvG~~vaArLI~~AGgL-------------~~LAK~PAsnIqvLGAeKalf~~l~ 81 (169)
T 3gqu_A 15 MVIGAGGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGL-------------KELAMLPSSTIQVLGAEKALFRHLR 81 (169)
T ss_dssp -----CCHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSH-------------HHHHTCCSHHHHTSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHhChHHHHHHHHHhCCH-------------HHHhhCCHHHHHHHhhhhHHHHHHh
Confidence 334678999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ccCCCCceEEEecccccccCchhhHHHhhhhhcCCchhhHhHHHHHhhhhHHhhhhhcccCCCCCCcccHHHHHHHHHHH
Q psy11166 1412 QTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKL 1491 (1746)
Q Consensus 1412 t~~~~pk~G~Iy~s~lVq~~P~~~~~~~~~~~~~~~~~~r~KaaR~lAaK~aLAARvD~~~~~~dg~~G~~lreeIe~kl 1491 (1746)
+++.+|||||||||++|+++|+ ++|+||+|+||+||+||||||+|++ ..+|..|+++|++||
T Consensus 82 t~~~~pk~G~Iy~s~lV~~~p~---------------~~rgK~aR~LAaK~aLAARiD~~~g---~~~G~~lreeie~ri 143 (169)
T 3gqu_A 82 TGAKPPKHGVIYQYPAINRSPW---------------WQRGKIARALAGKLAIAARVDYFSG---EYIAEELKKELEARI 143 (169)
T ss_dssp -------CCGGGGSHHHHTSCT---------------TTHHHHHHHHHHHHHHHHHHHHHTC---CCCCTTHHHHHHHHH
T ss_pred cCCCCCCCCEEEeCHhhhcCCH---------------HHHHHHHHHHHHHHHHHHhhcccCC---cccCHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999974 357999999999999
Q ss_pred HHhcC
Q psy11166 1492 DKLTE 1496 (1746)
Q Consensus 1492 ~Kl~E 1496 (1746)
++|+|
T Consensus 144 ekl~e 148 (169)
T 3gqu_A 144 KEIKE 148 (169)
T ss_dssp HHCCC
T ss_pred HHHHH
Confidence 98886
No 9
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=100.00 E-value=1.3e-39 Score=379.86 Aligned_cols=222 Identities=22% Similarity=0.395 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCC-CHHHHHHHHHHhhhhhccc
Q psy11166 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ-SREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~-SveEF~aDVrLIF~NC~~Y 575 (1746)
+..+|..+|..+.+. .+..++||+.||++..+||||+||++||||+||++|| +.|. ++++|.+||+|||.||++|
T Consensus 79 ~~~~~~~~l~~l~~~--~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~y 154 (361)
T 2r10_A 79 FNRFISFTLDVLIDK--YKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 154 (361)
T ss_dssp HHHHHHHHHHHHHHH--THHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhc
Confidence 456666677666543 2245899999999999999999999999999999999 5555 8999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCCCCCCchhHhhhhhHHHHHH-------HHh----------hcC
Q psy11166 576 NGAKSILTDAARRMLTLCVELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIVN-------NKL----------KNM 638 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~lke~Ee~l~rLEkaInPlldDnDq~aLS~IL~eIV~-------~kL----------k~~ 638 (1746)
|+++|.++.+|..|+++|.+.|.+.... .+ +....+.....+..++..++. ..+ .++
T Consensus 155 N~~~s~i~~~a~~l~~~~~~~~~k~k~~----~~--~~~i~~~~k~~l~~~~~~l~~~~~~~i~~~~~~~r~~~~~~~~~ 228 (361)
T 2r10_A 155 NEYDSLIVKNSMQVVMLIEFEVLKAKNL----KR--NYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKV 228 (361)
T ss_dssp BCSSSHHHHHHHHHHHHHHHHHHHHHTT----TT--CCBCCHHHHHHHHHHHHHHHHCCHHHHHHHHHGGGCCSSCCCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhcccc----CC--cCcCCHHHHHHHHHHHHHhhccchHHHHHHHhccccccccccCC
Confidence 9999999999999999999988754210 00 001111111122222222211 111 246
Q ss_pred CccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Q psy11166 639 ADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKL 718 (1746)
Q Consensus 639 ~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fek 718 (1746)
+.+|||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||+||++||+++|.+|.+|..|+++|+.
T Consensus 229 ~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~ 308 (361)
T 2r10_A 229 KLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNY 308 (361)
T ss_dssp CTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred cchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHH
Q psy11166 719 ALEKY-DDHLT 728 (1746)
Q Consensus 719 ~l~el-~~~l~ 728 (1746)
.+.+. .+.+.
T Consensus 309 ~~~~~~~p~~~ 319 (361)
T 2r10_A 309 LIQKEFFPELQ 319 (361)
T ss_dssp HHHHTHHHHHH
T ss_pred HHHHhcCCcch
Confidence 99873 44433
No 10
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=100.00 E-value=1.3e-39 Score=373.34 Aligned_cols=220 Identities=23% Similarity=0.397 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCC-CHHHHHHHHHHhhhhhcccCC
Q psy11166 499 SILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ-SREEFLADVNQIVENSTLYNG 577 (1746)
Q Consensus 499 ~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~-SveEF~aDVrLIF~NC~~YN~ 577 (1746)
.++..+|..+.+. .+..++||+.||++..+||||++|++||||+||++|| +.|. ++++|.+||+|||.||++||+
T Consensus 31 ~~~~~~L~~~~~~--~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~ 106 (311)
T 2r0y_A 31 RFISFTLDVLIDK--YKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNE 106 (311)
T ss_dssp HHHHHHHHHHHHH--SHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHc--CCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccC
Confidence 3444444444431 2356899999999999999999999999999999999 5565 899999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCCCCCCchhHhhhhhHHHHH-------HHHh----------hcCCc
Q psy11166 578 AKSILTDAARRMLTLCVELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIV-------NNKL----------KNMAD 640 (1746)
Q Consensus 578 ~gS~I~k~A~~Lek~fee~lke~Ee~l~rLEkaInPlldDnDq~aLS~IL~eIV-------~~kL----------k~~~~ 640 (1746)
++|.++++|..|+++|.+.|.+.... .+ +....+.....+..++..++ ...+ .+++.
T Consensus 107 ~~s~i~~~A~~l~~~~~~~~~k~k~~----~~--~~~i~~~~k~~l~~~~~~l~~~~~~~i~~~l~~~r~~k~~~~~~~~ 180 (311)
T 2r0y_A 107 YDSLIVKNSMQVVMLIEFEVLKAKNL----KR--NYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKL 180 (311)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHTG----GG--CCBCCHHHHHHHHHHHHHHHHCCHHHHHHHHHGGGSCSSCCCSSCT
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccC----CC--CCCCChHHHHHHHHHHHHHHhhhHHHHHHHHhccccccccccCCcc
Confidence 99999999999999999988764211 10 00111111111222222211 1111 24678
Q ss_pred cccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Q psy11166 641 AWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLAL 720 (1746)
Q Consensus 641 S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fek~l 720 (1746)
++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||+||++||+++|.+|.+|..|+++|++.+
T Consensus 181 s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~ 260 (311)
T 2r0y_A 181 SEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLI 260 (311)
T ss_dssp TGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHH
Q psy11166 721 EKY-DDHLT 728 (1746)
Q Consensus 721 ~el-~~~l~ 728 (1746)
++. .+.+.
T Consensus 261 ~~~~~p~~~ 269 (311)
T 2r0y_A 261 QKEFFPELQ 269 (311)
T ss_dssp HHTHHHHHH
T ss_pred HHhcCCcch
Confidence 873 44443
No 11
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=99.97 E-value=8.1e-33 Score=310.46 Aligned_cols=215 Identities=20% Similarity=0.248 Sum_probs=167.2
Q ss_pred eeeeeec-C-cccccccccccccc-----hhcccCccccCCCcccccceeeccCCccchhh--hhhhcccccccHHHHHh
Q psy11166 1118 WHFIEIK-S-SFKTNNVQILSGGF-----HSLCGSSRSIEPNTRQSRNVWHGSGNLKTLTS--TLFYFVFQAKSIHQIAK 1188 (1746)
Q Consensus 1118 ~~~~~~~-~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~g~~k~~~~--~l~~~~~~~~~v~~iak 1188 (1746)
+.|..|+ + .-+++|++-+++|. ..+++... | . -+||+|.|-..+ ++|.+|+. ..+..|+.
T Consensus 23 v~f~pF~~s~~~ale~~~~i~eG~~~~~L~~fL~~~~---~-----~--~l~V~D~kL~~~i~~~gi~~~~-~~~~~~~~ 91 (268)
T 3id6_A 23 VDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVN---P-----Q--EVVVENEAEVPKLQALGYRVSY-EPYSKVSR 91 (268)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHTCCCHHHHHHHHHSC---C-----S--EEEESCTTHHHHHTTTTCEEEE-CTTCHHHH
T ss_pred eeecCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHhC---C-----C--eEEEeChHHHHHHHhcCCCccc-CCcHHHHH
Confidence 5566666 2 34589999999887 56666665 4 1 268999995544 35999983 34445555
Q ss_pred ccCchhHHHHHH----------------HHHHHHhccCCCCCccCCCCCCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy11166 1189 LRNSEQLQNVMT----------------SIEKYQKSNQSQAPIVGPVESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEK 1252 (1746)
Q Consensus 1189 L~~s~~~~~vm~----------------~I~~~~~~~~~~~~~~g~~e~~pEy~lIVqan~L~~eID~EI~~ih~~lRe~ 1252 (1746)
+.+ ..+..++. .+.+..... .+ ....+-.+++|||||+|+++||+|||++|||||||
T Consensus 92 ~iR-~~~~~l~~~~G~~~~~~d~~~~~lgl~hs~sR~----Kl--k~~~~k~D~mIIQai~llDdlDkeiN~~~mRvREW 164 (268)
T 3id6_A 92 IFR-ESLPKVAIDIKFASNEEDYYNFLHELSLEYTRR----KL--RSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREW 164 (268)
T ss_dssp HHH-HTTTHHHHHTTSCSSHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HhHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH----HH--hcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 23333332 222111110 00 01234579999999999999999999999999999
Q ss_pred hhccCccchhccCChHHHHHHHHHHhCCcccCCCchHHHhh-cchhhhhhhheeccccCCCCCCHHHHHHHHHHHHHHHH
Q psy11166 1253 YNKRFPELDTLVVSPLEYLRTVRELGNDLDQTKNNETLQQV-LTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFE 1331 (1746)
Q Consensus 1253 Ys~rFPELesLV~~p~~Y~r~V~~igN~ld~~k~~e~L~~i-L~~~timvVsv~AstS~G~~Lseedl~~I~~ac~~i~~ 1331 (1746)
|+||||||++||+||++|+++|+.|||+.+.+. ++|.++ |+.+++++|+++|++|||.+||++||.+|..+|+++++
T Consensus 165 Y~~hFPEL~kiV~d~~~Yak~V~~ig~r~~l~~--~~l~~i~l~~~~~~~I~~aA~~SmG~~ise~DL~~I~~~a~~v~~ 242 (268)
T 3id6_A 165 YSIHFPELDKLIEDHEEYATIVSRFGDRGFLTI--DSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILD 242 (268)
T ss_dssp HTTTCTTHHHHCCCHHHHHHHHHHHCSTTSCCH--HHHGGGTCCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhccCccHHHhccCHHHHHHHHHHhCCcccCCc--ccHhhcCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988753 569999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCC
Q psy11166 1332 LNQFKTSIFEYVESRMTYIAP 1352 (1746)
Q Consensus 1332 L~~~r~~i~~YVesRM~~IAP 1352 (1746)
|.++|++|.+||++||..+|-
T Consensus 243 L~e~R~~L~~Yl~srM~~~~~ 263 (268)
T 3id6_A 243 LYNIRRNLNNYLEGVMKEVAH 263 (268)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 12
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.94 E-value=2.5e-27 Score=266.31 Aligned_cols=110 Identities=35% Similarity=0.671 Sum_probs=101.9
Q ss_pred chhHhhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Q psy11166 618 NDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVL 697 (1746)
Q Consensus 618 nDq~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~t 697 (1746)
++.+.++.+|..++. .|+.++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||+||++
T Consensus 10 ~~~~~l~~~l~~il~-~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 88 (265)
T 3uv5_A 10 DPMVTLSSILESIIN-DMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSAT 88 (265)
T ss_dssp CHHHHHHHHHHHHHH-HHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-HHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhh
Confidence 456778889988885 8888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 698 YNGPGSQVTEKAEKLLEEAKLALEKYDDHLT 728 (1746)
Q Consensus 698 YN~p~S~Iy~~A~~Lqk~fek~l~el~~~l~ 728 (1746)
||+++|.++.+|..|++.|...+.++.+.+.
T Consensus 89 yN~~~s~i~~~A~~l~~~~~~~~~~~~~~~~ 119 (265)
T 3uv5_A 89 YNGPKHSLTQISQSMLDLCDEKLKEKEDKLA 119 (265)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999998887765543
No 13
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=3.6e-25 Score=232.58 Aligned_cols=133 Identities=52% Similarity=0.852 Sum_probs=120.7
Q ss_pred CCchhHhhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Q psy11166 616 DDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNS 695 (1746)
Q Consensus 616 dDnDq~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA 695 (1746)
-+++++.++.+|..++..+++.++.+|||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||
T Consensus 23 ~~d~~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na 102 (158)
T 3uv4_A 23 MDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANS 102 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 35678999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCC
Q psy11166 696 VLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQADVD 748 (1746)
Q Consensus 696 ~tYN~p~S~Iy~~A~~Lqk~fek~l~el~~~l~qlE~~I~~~~e~a~eeaded 748 (1746)
++||+++|.++.+|..|++.|.+.+.++.+.+.+++.+|...++++.++++.+
T Consensus 103 ~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~le~~i~~~~e~a~~eae~~ 155 (158)
T 3uv4_A 103 VKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEEAELE 155 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCC---------
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999998888877654
No 14
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.92 E-value=3e-25 Score=252.75 Aligned_cols=104 Identities=36% Similarity=0.662 Sum_probs=95.1
Q ss_pred hhHhhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Q psy11166 619 DQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLY 698 (1746)
Q Consensus 619 Dq~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tY 698 (1746)
..+.++.++..++. .|+.++.++||..||++..+||||++|++||||+||++||+++.|.++.+|..||+|||+||++|
T Consensus 44 p~~~l~~~~~~il~-~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~y 122 (292)
T 3aad_A 44 PMVTLSSILESIIN-DMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122 (292)
T ss_dssp HHHHHHHHHHHHHH-HHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 44567788888875 78889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11166 699 NGPGSQVTEKAEKLLEEAKLALEKY 723 (1746)
Q Consensus 699 N~p~S~Iy~~A~~Lqk~fek~l~el 723 (1746)
|+++|.++.+|..|++.|...+.+.
T Consensus 123 N~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 123 NGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp TCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred cCCchHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999998877655443
No 15
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.88 E-value=8e-23 Score=206.82 Aligned_cols=113 Identities=20% Similarity=0.289 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHhccc--cCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q psy11166 495 VVLTSILEKILNEMRDMSQ--TEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENS 572 (1746)
Q Consensus 495 ~~Ls~~LeeIL~eL~s~~~--~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC 572 (1746)
..+...|+.|++.|+.+.+ .++.++||+.||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 87 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4688899999999999875 35679999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHhhhhHHHHHHh
Q psy11166 573 TLYNGAKSILTDAARRMLTLCVELLGKKEELLMRL 607 (1746)
Q Consensus 573 ~~YN~~gS~I~k~A~~Lek~fee~lke~Ee~l~rL 607 (1746)
++||+++|.++.+|..|++.|++.+++..+.+..+
T Consensus 88 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~~i 122 (126)
T 3mqm_A 88 EKYYGRKSPVGRDVCRLRKAYYNARHEASAQIDEI 122 (126)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877665544
No 16
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.88 E-value=9.1e-23 Score=203.86 Aligned_cols=100 Identities=33% Similarity=0.487 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy11166 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN 576 (1746)
....|..|+..|..+ +.++||+.||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||
T Consensus 14 ~~~~c~~il~~l~~~----~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (117)
T 3g0l_A 14 DLALCSMILTEMETH----EDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFN 89 (117)
T ss_dssp HHHHHHHHHHHHHTS----TTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhC----CCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 446677888888765 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 577 GAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 577 ~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
+++|.++.+|..|++.|++.|++.
T Consensus 90 ~~~s~~~~~A~~L~~~f~~~~~~~ 113 (117)
T 3g0l_A 90 EDDSDIGRAGHNMRKYFEKKWTDT 113 (117)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999764
No 17
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.88 E-value=5.1e-23 Score=207.87 Aligned_cols=106 Identities=21% Similarity=0.381 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q psy11166 496 VLTSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
.+...|..|++.|+.+.+. ++.++||..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 94 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNAC 94 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 5778899999999998765 77899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhhhhH
Q psy11166 574 LYNGAKSILTDAARRMLTLCVELLGKKE 601 (1746)
Q Consensus 574 ~YN~~gS~I~k~A~~Lek~fee~lke~E 601 (1746)
+||+++|.++.+|..|++.|++.+++.+
T Consensus 95 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 95 TYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
No 18
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.88 E-value=5.8e-23 Score=215.86 Aligned_cols=119 Identities=45% Similarity=0.728 Sum_probs=107.6
Q ss_pred CcHHHHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q psy11166 492 DPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVEN 571 (1746)
Q Consensus 492 dp~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~N 571 (1746)
++...|..+|+.|+... ...++.++||+.||++..+||||++|++||||+||++||+++.|.++.+|.+||+|||.|
T Consensus 25 d~~~~l~~iL~~i~~~k---l~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N 101 (158)
T 3uv4_A 25 DDQVAFSFILDNIVTQK---MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILAN 101 (158)
T ss_dssp HHHHHHHHHHHHHHHHT---TTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH---HHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 45667777777776652 233588999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCC
Q psy11166 572 STLYNGAKSILTDAARRMLTLCVELLGKKEELLMRLEKAINP 613 (1746)
Q Consensus 572 C~~YN~~gS~I~k~A~~Lek~fee~lke~Ee~l~rLEkaInP 613 (1746)
|++||+++|.++.+|..|.+.|.+.+.+.++.+.++++.|+-
T Consensus 102 a~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~le~~i~~ 143 (158)
T 3uv4_A 102 SVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICT 143 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887764
No 19
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=203.67 Aligned_cols=107 Identities=29% Similarity=0.435 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
.+...|..||..|+.+ +.++||+.||+++.+||||++|++||||+||++||+++.|.++++|.+||+|||.||++|
T Consensus 7 pl~~~l~~il~~l~~~----~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 82 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEK----DTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKY 82 (121)
T ss_dssp HHHHHHHHHHHHHHHH----CSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC----CccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567888888888876 679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy11166 576 NGAKSILTDAARRMLTLCVELLGKKEELLMR 606 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~lke~Ee~l~r 606 (1746)
|+++|.++.+|..|++.|++.+.+....+.+
T Consensus 83 N~~~s~~~~~A~~L~~~~~~~l~~~~~~~~~ 113 (121)
T 2d9e_A 83 NAKDTIFYRAAVRLREQGGAVLRQARRQAEK 113 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887765543
No 20
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.88 E-value=1.1e-22 Score=204.28 Aligned_cols=110 Identities=23% Similarity=0.347 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhh
Q psy11166 494 VVVLTSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVEN 571 (1746)
Q Consensus 494 ~~~Ls~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~N 571 (1746)
...+...|+.++..|+.+.+. ++.++||+.||++..+||||++|++||||+||++||.++.|.++++|.+||+|||.|
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 567889999999999998663 566999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHhhhhHHH
Q psy11166 572 STLYNGAKSILTDAARRMLTLCVELLGKKEEL 603 (1746)
Q Consensus 572 C~~YN~~gS~I~k~A~~Lek~fee~lke~Ee~ 603 (1746)
|++||+++|.++.+|..|++.|++.+++.+++
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 86 AKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999988765
No 21
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.88 E-value=1.1e-22 Score=201.98 Aligned_cols=104 Identities=29% Similarity=0.479 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q psy11166 494 VVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 494 ~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
...|...|..|++.|..+ +.++||+.||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.||+
T Consensus 5 ~~~l~~~~~~il~~l~~~----~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 80 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSH----PSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCR 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHS----GGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC----CCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHH
Confidence 467888889999988876 6799999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhhhhH
Q psy11166 574 LYNGAKSILTDAARRMLTLCVELLGKKE 601 (1746)
Q Consensus 574 ~YN~~gS~I~k~A~~Lek~fee~lke~E 601 (1746)
+||+++|.++.+|..|++.|++.+++..
T Consensus 81 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 81 EYNPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999997654
No 22
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=204.60 Aligned_cols=106 Identities=20% Similarity=0.352 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q psy11166 495 VVLTSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENS 572 (1746)
Q Consensus 495 ~~Ls~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC 572 (1746)
..+...|..|++.|+++.+. ++.++||+.||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||
T Consensus 12 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 91 (123)
T 2dat_A 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNA 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 57888999999999998753 5689999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 573 TLYNGAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 573 ~~YN~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
++||+++|.++.+|..|++.|++.+++.
T Consensus 92 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 92 QTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999988753
No 23
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.87 E-value=1.7e-22 Score=205.66 Aligned_cols=108 Identities=22% Similarity=0.389 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHhccc---cCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q psy11166 494 VVVLTSILEKILNEMRDMSQ---TEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVE 570 (1746)
Q Consensus 494 ~~~Ls~~LeeIL~eL~s~~~---~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~ 570 (1746)
...+...|..|++.|+++.+ .++.++||+.||++..+||||++|++||||+||++||.++.|.++.+|.+||+|||.
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~ 88 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQ 88 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999874 467899999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHHHHhhhhH
Q psy11166 571 NSTLYNGAKSILTDAARRMLTLCVELLGKKE 601 (1746)
Q Consensus 571 NC~~YN~~gS~I~k~A~~Lek~fee~lke~E 601 (1746)
||++||+++|.++.+|..|++.|++.+++..
T Consensus 89 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 119 (129)
T 2grc_A 89 NAQTFNLEGSLIYEDSIVLQSVFTSVRQKIE 119 (129)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999987754
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=205.59 Aligned_cols=114 Identities=19% Similarity=0.280 Sum_probs=105.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHH
Q psy11166 489 RRTDPVVVLTSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVN 566 (1746)
Q Consensus 489 Rradp~~~Ls~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVr 566 (1746)
-.......++..+..+++.|+++.+. ++.++||+.||++..+||||++|++||||+||++||+++.|.++++|.+||+
T Consensus 10 ~~~~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~ 89 (130)
T 3k2j_A 10 GVDLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLN 89 (130)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34455678999999999999998764 5679999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccCCCCChHHHHHHHHHHHHHHHhhhhHH
Q psy11166 567 QIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEE 602 (1746)
Q Consensus 567 LIF~NC~~YN~~gS~I~k~A~~Lek~fee~lke~Ee 602 (1746)
|||.||++||+++|.++++|..|++.|++.+++..+
T Consensus 90 Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 125 (130)
T 3k2j_A 90 LMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELAR 125 (130)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999987643
No 25
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.87 E-value=3.9e-22 Score=200.23 Aligned_cols=102 Identities=27% Similarity=0.540 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q psy11166 494 VVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 494 ~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
...+...|..|+..|.+. +.+++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.||+
T Consensus 6 ~~~l~~~l~~il~~L~~~----~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~ 81 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRK----DPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAM 81 (117)
T ss_dssp HHHHHHHHHHHHHHHHTS----SGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhC----cccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 456778888888888765 6789999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhhh
Q psy11166 574 LYNGAKSILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 574 ~YN~~gS~I~k~A~~Lek~fee~lke 599 (1746)
+||+++|.++.+|..|++.|++.+..
T Consensus 82 ~yN~~~s~i~~~A~~L~~~f~~~~~~ 107 (117)
T 2i7k_A 82 IYNKPETIYYKAAKKLLHSGMKILSQ 107 (117)
T ss_dssp HTSCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 26
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.86 E-value=2.4e-22 Score=200.78 Aligned_cols=104 Identities=22% Similarity=0.370 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhcccc--CCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 498 TSILEKILNEMRDMSQT--EPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 498 s~~LeeIL~eL~s~~~~--~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
...|..|++.|+++++. ++.++||+.||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++|
T Consensus 7 ~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 86 (116)
T 3iu5_A 7 IAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSY 86 (116)
T ss_dssp HHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56788889999988664 5679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhhH
Q psy11166 576 NGAKSILTDAARRMLTLCVELLGKKE 601 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~lke~E 601 (1746)
|+++|.++.+|..|++.|++.+++..
T Consensus 87 N~~~s~~~~~A~~L~~~f~~~~~~l~ 112 (116)
T 3iu5_A 87 YKPDSPEYKAACKLWDLYLRTRNEFV 112 (116)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998765
No 27
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.86 E-value=5.2e-22 Score=201.69 Aligned_cols=102 Identities=27% Similarity=0.445 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHhccccCCCccccccCCCCC--CCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q psy11166 495 VVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAK--LVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENS 572 (1746)
Q Consensus 495 ~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~k--e~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC 572 (1746)
..|..+|+.|+..|..+ +.++||+.|||+. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||
T Consensus 20 ~~l~~~~~~il~~L~~~----~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 95 (127)
T 2oss_A 20 NQLQYLLRVVLKTLWKH----QFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNC 95 (127)
T ss_dssp HHHHHHHHTHHHHHHTS----TTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC----ccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46777788888887764 7899999999975 79999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 573 TLYNGAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 573 ~~YN~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
++||+++|.++.+|..|++.|++.+++.
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 96 YIYNKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999998764
No 28
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.86 E-value=6.4e-22 Score=198.30 Aligned_cols=111 Identities=25% Similarity=0.408 Sum_probs=98.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccccCCCccccccCCCCC--CCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHH
Q psy11166 489 RRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAK--LVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVN 566 (1746)
Q Consensus 489 Rradp~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~k--e~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVr 566 (1746)
++.-....+...|..++..|... ++.++||..||++. .+||||++|++||||+||++||+++.|.++++|.+||+
T Consensus 4 ~~~~~~~el~~~l~~~l~~l~~~---~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~ 80 (119)
T 3p1f_A 4 KKIFKPEELRQALMPTLEALYRQ---DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVW 80 (119)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTC---TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHh---CCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 33344567777888888877652 47899999999998 79999999999999999999999999999999999999
Q ss_pred HhhhhhcccCCCCChHHHHHHHHHHHHHHHhhhhHH
Q psy11166 567 QIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEE 602 (1746)
Q Consensus 567 LIF~NC~~YN~~gS~I~k~A~~Lek~fee~lke~Ee 602 (1746)
|||.||++||+++|.++.+|..|++.|++.+.+..+
T Consensus 81 li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 81 LMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999877543
No 29
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.86 E-value=2.8e-22 Score=200.05 Aligned_cols=99 Identities=25% Similarity=0.458 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccC
Q psy11166 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN 576 (1746)
+...|..++..|..+ +.++||..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||
T Consensus 17 ~~~~~~~il~~l~~~----~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 17 DFTAMYKVLDVVKAH----KDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp HHHHHHHHHHHHHHS----TTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 456677778877765 7799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhh
Q psy11166 577 GAKSILTDAARRMLTLCVELLGK 599 (1746)
Q Consensus 577 ~~gS~I~k~A~~Lek~fee~lke 599 (1746)
+++|.++.+|..|++.|++.|.+
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998864
No 30
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.86 E-value=4.9e-22 Score=200.21 Aligned_cols=101 Identities=32% Similarity=0.548 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCC
Q psy11166 499 SILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGA 578 (1746)
Q Consensus 499 ~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~ 578 (1746)
..|..|++.|.++ +.++||+.||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||++
T Consensus 16 ~~~~~il~~l~~~----~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 16 AAIQNILTELQNH----AAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp HHHHHHHHHHHHS----TTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcC----CCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5577777777764 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhhhHHH
Q psy11166 579 KSILTDAARRMLTLCVELLGKKEEL 603 (1746)
Q Consensus 579 gS~I~k~A~~Lek~fee~lke~Ee~ 603 (1746)
+|.++.+|..|++.|++.+++..++
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~p~~ 116 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEIPEY 116 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999876543
No 31
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=200.69 Aligned_cols=108 Identities=29% Similarity=0.495 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
.+...|..++..|..+ +.++||..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++|
T Consensus 13 ~l~~~l~~il~~l~~~----~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDK----DPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp HHHHHHHHHHHHHHHT----CTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC----CcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4677888888888775 789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhhHHHHHHh
Q psy11166 576 NGAKSILTDAARRMLTLCVELLGKKEELLMRL 607 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~lke~Ee~l~rL 607 (1746)
|+++|.++++|..|++.|.+.+++..+...+.
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~~ 120 (135)
T 3rcw_A 89 NARDTVFYRAAVRLRDQGGVVLRQARREVDSI 120 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999877655544
No 32
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.86 E-value=6.7e-22 Score=206.94 Aligned_cols=105 Identities=23% Similarity=0.367 Sum_probs=96.0
Q ss_pred cHHHHHHHHHHHHHHHHhccccCCCccccccCCCCC--CCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhh
Q psy11166 493 PVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAK--LVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVE 570 (1746)
Q Consensus 493 p~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~k--e~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~ 570 (1746)
....+..+++.|++.|..+ +.++||+.||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.
T Consensus 29 ~t~~l~~~~~~il~~l~~~----~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~ 104 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWKH----QFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFT 104 (154)
T ss_dssp CBHHHHHHHHTHHHHHHTS----TTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhC----cCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3456777777777777665 7899999999988 699999999999999999999999999999999999999999
Q ss_pred hhcccCCCCChHHHHHHHHHHHHHHHhhhhH
Q psy11166 571 NSTLYNGAKSILTDAARRMLTLCVELLGKKE 601 (1746)
Q Consensus 571 NC~~YN~~gS~I~k~A~~Lek~fee~lke~E 601 (1746)
||++||+++|.++.+|..|+++|++.|++..
T Consensus 105 Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 105 NCYIYNKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999997753
No 33
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.85 E-value=8.9e-22 Score=201.35 Aligned_cols=104 Identities=28% Similarity=0.407 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcc
Q psy11166 495 VVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTL 574 (1746)
Q Consensus 495 ~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~ 574 (1746)
..+...|..|+..|..+ +.++||+.||++..+||||++|++||||+||++||.++.|.++++|.+||+|||.||++
T Consensus 20 ~~l~~~~~~il~~l~~~----~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQC----EDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA 95 (135)
T ss_dssp STHHHHHHHHHHHHHHS----GGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC----CCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35778888888888876 66899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CChHHHHHHHHHHHHHHHhhhhHH
Q psy11166 575 YNGA-KSILTDAARRMLTLCVELLGKKEE 602 (1746)
Q Consensus 575 YN~~-gS~I~k~A~~Lek~fee~lke~Ee 602 (1746)
||++ +|.++.+|..|++.|++.+.+...
T Consensus 96 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~ 124 (135)
T 3mb3_A 96 YTPSKRSRIYSMSLRLSAFFEEHISSVLS 124 (135)
T ss_dssp HSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 899999999999999999987543
No 34
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.85 E-value=1.2e-21 Score=194.62 Aligned_cols=104 Identities=29% Similarity=0.479 Sum_probs=96.1
Q ss_pred hHhhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccC
Q psy11166 620 QVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYN 699 (1746)
Q Consensus 620 q~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN 699 (1746)
+..+...|..++. .++.++.++||..||++..+||||++|++||||+||++||.++.|.++++|.+||+|||.||++||
T Consensus 5 ~~~l~~~~~~il~-~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 5 PDQLYTTLKNLLA-QIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp HHHHHHHHHHHHH-HHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-HHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 4456677777764 788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11166 700 GPGSQVTEKAEKLLEEAKLALEKYD 724 (1746)
Q Consensus 700 ~p~S~Iy~~A~~Lqk~fek~l~el~ 724 (1746)
+++|.++.+|..|++.|++.++++.
T Consensus 84 ~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 84 PPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999888653
No 35
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=197.88 Aligned_cols=102 Identities=25% Similarity=0.539 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
.+...|..|+..|..+ +.++||..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++|
T Consensus 13 p~~~~l~~il~~l~~~----~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRK----DPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTY 88 (123)
T ss_dssp HHHHHHHHHHHHHHTT----CTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC----CccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567788888888765 778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhhH
Q psy11166 576 NGAKSILTDAARRMLTLCVELLGKKE 601 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~lke~E 601 (1746)
|+++|.++.+|..|++.|.+.+.+..
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 89 NRPDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997543
No 36
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=196.73 Aligned_cols=103 Identities=24% Similarity=0.387 Sum_probs=94.9
Q ss_pred hhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy11166 623 LSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPG 702 (1746)
Q Consensus 623 LS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~ 702 (1746)
+...|..++ ..|+.++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||+++
T Consensus 8 l~~~l~~il-~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 86 (121)
T 2d9e_A 8 FLILLRKTL-EQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKD 86 (121)
T ss_dssp HHHHHHHHH-HHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHH-HHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 455666666 4677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 703 SQVTEKAEKLLEEAKLALEKYDDH 726 (1746)
Q Consensus 703 S~Iy~~A~~Lqk~fek~l~el~~~ 726 (1746)
|.+|.+|..|++.|...+.++...
T Consensus 87 s~~~~~A~~L~~~~~~~l~~~~~~ 110 (121)
T 2d9e_A 87 TIFYRAAVRLREQGGAVLRQARRQ 110 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887654
No 37
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=196.47 Aligned_cols=104 Identities=27% Similarity=0.394 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
.+...|..|+..|..+ +.++||+.||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++|
T Consensus 10 ~~~~~c~~il~~l~~~----~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQC----EDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAY 85 (123)
T ss_dssp CHHHHHHHHHHHHHTS----GGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC----CCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5677788888888776 679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CChHHHHHHHHHHHHHHHhhhhHHH
Q psy11166 576 NGA-KSILTDAARRMLTLCVELLGKKEEL 603 (1746)
Q Consensus 576 N~~-gS~I~k~A~~Lek~fee~lke~Ee~ 603 (1746)
|++ +|.++.+|..|++.|++.+++....
T Consensus 86 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 114 (123)
T 3q2e_A 86 TPNKRSKIYSMTLRLSALFEEKMKKISSD 114 (123)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 9999999999999999999876543
No 38
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.85 E-value=2.7e-21 Score=193.83 Aligned_cols=107 Identities=24% Similarity=0.413 Sum_probs=98.0
Q ss_pred hHhhhhhHHHHHHHHhhcCCccccccccCCcc--ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Q psy11166 620 QVALSFIFDDIVNNKLKNMADAWIFIKPVNKK--FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVL 697 (1746)
Q Consensus 620 q~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k--~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~t 697 (1746)
+..+...|..++...+..++.++||..||++. .+||||++|++||||+||++||.++.|.++++|..||+|||+||++
T Consensus 9 ~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 88 (119)
T 3p1f_A 9 PEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34566677777765566789999999999998 6999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 698 YNGPGSQVTEKAEKLLEEAKLALEKYDDH 726 (1746)
Q Consensus 698 YN~p~S~Iy~~A~~Lqk~fek~l~el~~~ 726 (1746)
||+++|.++.+|..|++.|++.++++..+
T Consensus 89 yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 89 YNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987765
No 39
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.85 E-value=4.2e-21 Score=203.11 Aligned_cols=112 Identities=27% Similarity=0.403 Sum_probs=96.4
Q ss_pred hhhhhHHHHHHHHhhcCCccccccccCCcc--ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccC
Q psy11166 622 ALSFIFDDIVNNKLKNMADAWIFIKPVNKK--FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYN 699 (1746)
Q Consensus 622 aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k--~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN 699 (1746)
.+...|..|+ ..|+.++.++||..||++. .+||||++|++||||+||++||.++.|.++++|..||+|||.||++||
T Consensus 21 ~~~~~~~~il-~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 99 (166)
T 3fkm_X 21 QWYLLANQLI-LSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYN 99 (166)
T ss_dssp HHHHHHHHHH-HHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH-HHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4556677766 4788899999999999976 599999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy11166 700 GPGSQVTEKAEKLLEEAKLALEKYD-DHLTQLEKTI 734 (1746)
Q Consensus 700 ~p~S~Iy~~A~~Lqk~fek~l~el~-~~l~qlE~~I 734 (1746)
+++|.++.+|..|+++|.+.+.++. ..+......+
T Consensus 100 ~~~s~i~~~A~~L~~~f~~~l~~~~~~~~~~~~~~i 135 (166)
T 3fkm_X 100 TSNSVVAITGKNIETYFNNQLIVMGYNNFILKEKKI 135 (166)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccccchhhhhH
Confidence 9999999999999999999999864 3333333333
No 40
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.85 E-value=3.3e-21 Score=193.51 Aligned_cols=104 Identities=24% Similarity=0.415 Sum_probs=96.0
Q ss_pred hhHhhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Q psy11166 619 DQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLY 698 (1746)
Q Consensus 619 Dq~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tY 698 (1746)
+...+..+|..++. .|+.++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++|
T Consensus 5 ~~~~l~~~l~~il~-~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 83 (117)
T 2i7k_A 5 EQTPLQEALNQLMR-QLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY 83 (117)
T ss_dssp THHHHHHHHHHHHH-HHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHH-HHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34456677777774 77888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11166 699 NGPGSQVTEKAEKLLEEAKLALEKY 723 (1746)
Q Consensus 699 N~p~S~Iy~~A~~Lqk~fek~l~el 723 (1746)
|+++|.++.+|..|++.|.+.+...
T Consensus 84 N~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 84 NKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 41
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.84 E-value=1.7e-21 Score=198.57 Aligned_cols=102 Identities=27% Similarity=0.416 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhccccCCCccccccCCCCCC--CCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 498 TSILEKILNEMRDMSQTEPNVKQFSFPVNAKL--VPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 498 s~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke--~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
...|..||..|+.... ...++||+.|||+.. +||||++|++||||+||++||.++.|.++++|.+||+|||.||++|
T Consensus 24 l~~c~~il~~L~~~~~-~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 102 (130)
T 2ouo_A 24 LKCCSGILKEMFAKKH-AAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKY 102 (130)
T ss_dssp HHHHHHHHHHHTSGGG-HHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc-chhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567788888876532 135899999999874 9999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 576 NGAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
|+++|.++.+|..|++.|++.|.+.
T Consensus 103 N~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 103 NPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998764
No 42
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.84 E-value=4e-21 Score=194.44 Aligned_cols=95 Identities=25% Similarity=0.268 Sum_probs=89.8
Q ss_pred cCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q psy11166 637 NMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEA 716 (1746)
Q Consensus 637 ~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~f 716 (1746)
+++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||+++|.+|.+|..|++.|
T Consensus 29 g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f 108 (126)
T 3mqm_A 29 RQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAY 108 (126)
T ss_dssp CCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred CCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy11166 717 KLALEKYDDHLTQLE 731 (1746)
Q Consensus 717 ek~l~el~~~l~qlE 731 (1746)
.+.+.++.+.+..+.
T Consensus 109 ~~~~~~~~~~l~~i~ 123 (126)
T 3mqm_A 109 YNARHEASAQIDEIV 123 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988876654
No 43
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.84 E-value=4.1e-21 Score=191.98 Aligned_cols=99 Identities=26% Similarity=0.440 Sum_probs=92.3
Q ss_pred hHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHH
Q psy11166 626 IFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 705 (1746)
Q Consensus 626 IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~I 705 (1746)
.+..|+ ..|..++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||+++|.+
T Consensus 17 ~c~~il-~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~ 95 (117)
T 3g0l_A 17 LCSMIL-TEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDI 95 (117)
T ss_dssp HHHHHH-HHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHH
T ss_pred HHHHHH-HHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 345555 4777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11166 706 TEKAEKLLEEAKLALEKYDD 725 (1746)
Q Consensus 706 y~~A~~Lqk~fek~l~el~~ 725 (1746)
+.+|..|++.|++.++++..
T Consensus 96 ~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 96 GRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988754
No 44
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.84 E-value=4.9e-21 Score=192.45 Aligned_cols=107 Identities=27% Similarity=0.472 Sum_probs=95.3
Q ss_pred hhHhhhhhHHHHHHHHhhcCCc------cccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHH
Q psy11166 619 DQVALSFIFDDIVNNKLKNMAD------AWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692 (1746)
Q Consensus 619 Dq~aLS~IL~eIV~~kLk~~~~------S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf 692 (1746)
....+...|..++. .+..+.+ ++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||
T Consensus 5 ~p~~l~~~~~~ll~-~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 5 SPAYLKEILEQLLE-AIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp CHHHHHHHHHHHHH-HHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-HHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 34556666666664 4443333 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 693 SNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDH 726 (1746)
Q Consensus 693 ~NA~tYN~p~S~Iy~~A~~Lqk~fek~l~el~~~ 726 (1746)
.||++||+++|.++.+|..|++.|++.++++..+
T Consensus 84 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 84 KNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999988765
No 45
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.84 E-value=5.3e-21 Score=192.98 Aligned_cols=109 Identities=24% Similarity=0.353 Sum_probs=98.4
Q ss_pred hHhhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccC
Q psy11166 620 QVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYN 699 (1746)
Q Consensus 620 q~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN 699 (1746)
+..+...+..++ ..|..++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||
T Consensus 8 ~~~~~~~c~~il-~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 8 ESNWKKQCKELV-NLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp --CHHHHHHHHH-HHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-HHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344666677776 4788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 700 GP-GSQVTEKAEKLLEEAKLALEKYDDHLTQ 729 (1746)
Q Consensus 700 ~p-~S~Iy~~A~~Lqk~fek~l~el~~~l~q 729 (1746)
++ +|.+|.+|..|++.|++.++++...+..
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 117 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFKI 117 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 9999999999999999999998877543
No 46
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.84 E-value=8.8e-21 Score=194.00 Aligned_cols=107 Identities=25% Similarity=0.488 Sum_probs=98.2
Q ss_pred hhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy11166 623 LSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPG 702 (1746)
Q Consensus 623 LS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~ 702 (1746)
+..+|..++ ..++.++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||+++
T Consensus 14 l~~~l~~il-~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (135)
T 3rcw_A 14 LTVLLRSVL-DQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD 92 (135)
T ss_dssp HHHHHHHHH-HHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHH-HHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 555666766 4788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 703 SQVTEKAEKLLEEAKLALEKYDDHLTQL 730 (1746)
Q Consensus 703 S~Iy~~A~~Lqk~fek~l~el~~~l~ql 730 (1746)
|.+|.+|..|++.|.+.+++....+...
T Consensus 93 s~~~~~A~~L~~~~~~~~~~~~~~~~~~ 120 (135)
T 3rcw_A 93 TVFYRAAVRLRDQGGVVLRQARREVDSI 120 (135)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999887665443
No 47
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.84 E-value=2.2e-21 Score=201.61 Aligned_cols=104 Identities=26% Similarity=0.392 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhccc---cCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcc
Q psy11166 498 TSILEKILNEMRDMSQ---TEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTL 574 (1746)
Q Consensus 498 s~~LeeIL~eL~s~~~---~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~ 574 (1746)
...|+.|++.|+++.+ .++.++||+.||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5678888888888765 4677999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhhhH
Q psy11166 575 YNGAKSILTDAARRMLTLCVELLGKKE 601 (1746)
Q Consensus 575 YN~~gS~I~k~A~~Lek~fee~lke~E 601 (1746)
||+++|.++.+|..|++.|++.+++..
T Consensus 106 yN~~~s~i~~~A~~L~~~f~~~~~~l~ 132 (150)
T 3tlp_A 106 YNEEGSQVYNDAHILEKLLKEKRKELG 132 (150)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999987643
No 48
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.84 E-value=3.9e-21 Score=195.25 Aligned_cols=103 Identities=26% Similarity=0.499 Sum_probs=94.7
Q ss_pred HhhhhhHHHHHHHHhhcCCccccccccCCcc--ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Q psy11166 621 VALSFIFDDIVNNKLKNMADAWIFIKPVNKK--FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLY 698 (1746)
Q Consensus 621 ~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k--~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tY 698 (1746)
..+..++..|+ ..|+.++.+|||..|||+. .+||||++|++||||+||++||.++.|.++++|..||+|||+||++|
T Consensus 20 ~~l~~~~~~il-~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 20 NQLQYLLRVVL-KTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp HHHHHHHHTHH-HHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35677777666 4788899999999999975 69999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11166 699 NGPGSQVTEKAEKLLEEAKLALEKYD 724 (1746)
Q Consensus 699 N~p~S~Iy~~A~~Lqk~fek~l~el~ 724 (1746)
|+++|.++.+|..|++.|++.+.+++
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999887664
No 49
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=198.64 Aligned_cols=99 Identities=32% Similarity=0.459 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhc--CCCCCHHHHHHHHHHhhhhhcc
Q psy11166 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRS--KKYQSREEFLADVNQIVENSTL 574 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~--g~Y~SveEF~aDVrLIF~NC~~ 574 (1746)
....|..||..|..+ +.++||+.||+. .+||||++|++||||+||++||++ +.|.++++|.+||+|||.||++
T Consensus 21 ~~~~c~~il~~L~~~----~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~ 95 (135)
T 2yyn_A 21 DKRKCERLLLFLYCH----EMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAE 95 (135)
T ss_dssp HHHHHHHHHHHHHTS----GGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----ccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHH
Confidence 345677788877764 789999999998 799999999999999999999998 5999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 575 YNGAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 575 YN~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
||+++|.++.+|..|++.|++.+++.
T Consensus 96 yN~~~s~i~~~A~~L~~~f~~~~~~~ 121 (135)
T 2yyn_A 96 FNEPDSEVANAGIKLENYFEELLKNL 121 (135)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 50
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.84 E-value=2.4e-21 Score=194.38 Aligned_cols=103 Identities=28% Similarity=0.410 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhccccCCCccccccCCCCCC--CCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcc
Q psy11166 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKL--VPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTL 574 (1746)
Q Consensus 497 Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke--~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~ 574 (1746)
....|..||..|..... .+.++||+.||++.. +||||++|++||||+||++||+++.|.++++|.+||+|||.||++
T Consensus 10 ~l~~c~~il~~l~~~~~-~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 88 (120)
T 3jvl_A 10 QLKCCSGILKEMFAKKH-AAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYK 88 (120)
T ss_dssp HHHHHHHHHHHHTSGGG-HHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-ccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567777777766422 234899999999988 999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 575 YNGAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 575 YN~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
||+++|.++.+|..|++.|++.+.+.
T Consensus 89 yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 89 YNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999765
No 51
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.83 E-value=5.4e-21 Score=192.66 Aligned_cols=99 Identities=32% Similarity=0.593 Sum_probs=91.7
Q ss_pred hHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHH
Q psy11166 626 IFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 705 (1746)
Q Consensus 626 IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~I 705 (1746)
.+..|+ ..|..++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||+||++||+++|.+
T Consensus 17 ~~~~il-~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i 95 (121)
T 1e6i_A 17 AIQNIL-TELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSY 95 (121)
T ss_dssp HHHHHH-HHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHH-HHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 344544 4677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11166 706 TEKAEKLLEEAKLALEKYDD 725 (1746)
Q Consensus 706 y~~A~~Lqk~fek~l~el~~ 725 (1746)
+.+|..|++.|.+.+.+++.
T Consensus 96 ~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 96 YKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHHHHccc
Confidence 99999999999999987754
No 52
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.83 E-value=4.6e-21 Score=202.80 Aligned_cols=103 Identities=24% Similarity=0.407 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCccccccCCCCC--CCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q psy11166 495 VVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAK--LVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENS 572 (1746)
Q Consensus 495 ~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~k--e~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC 572 (1746)
..+...|..|+..|+.+ +.++||..||++. .+||||++|++||||+||++||.++.|.++.+|.+||+|||.||
T Consensus 20 ~~~~~~~~~il~~L~~~----~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKY----EGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNC 95 (166)
T ss_dssp HHHHHHHHHHHHHHTTS----TTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC----CCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 45666777777776654 7899999999976 59999999999999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHhhhhH
Q psy11166 573 TLYNGAKSILTDAARRMLTLCVELLGKKE 601 (1746)
Q Consensus 573 ~~YN~~gS~I~k~A~~Lek~fee~lke~E 601 (1746)
++||+++|.++.+|..|++.|++.|.+..
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 96 SLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999998754
No 53
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=193.47 Aligned_cols=107 Identities=22% Similarity=0.329 Sum_probs=97.8
Q ss_pred hhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy11166 622 ALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP 701 (1746)
Q Consensus 622 aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p 701 (1746)
.+...|..|+ ..|..++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||++
T Consensus 21 ~l~~~~~~il-~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 99 (135)
T 3mb3_A 21 AWKKQCEELL-NLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPS 99 (135)
T ss_dssp THHHHHHHHH-HHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH-HHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3555666666 477788999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 702 -GSQVTEKAEKLLEEAKLALEKYDDHLTQ 729 (1746)
Q Consensus 702 -~S~Iy~~A~~Lqk~fek~l~el~~~l~q 729 (1746)
+|.+|.+|..|+++|+..+.++...+..
T Consensus 100 ~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 128 (135)
T 3mb3_A 100 KRSRIYSMSLRLSAFFEEHISSVLSDYKS 128 (135)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998776543
No 54
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.83 E-value=7e-21 Score=193.74 Aligned_cols=90 Identities=24% Similarity=0.398 Sum_probs=85.4
Q ss_pred cCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q psy11166 637 NMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEA 716 (1746)
Q Consensus 637 ~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~f 716 (1746)
+++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||+||++||+++|.+|.+|..|++.|
T Consensus 32 ~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~~f 111 (129)
T 2grc_A 32 GRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF 111 (129)
T ss_dssp CCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred cCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy11166 717 KLALEKYDDH 726 (1746)
Q Consensus 717 ek~l~el~~~ 726 (1746)
.+.++++...
T Consensus 112 ~~~~~~l~~~ 121 (129)
T 2grc_A 112 TSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHccCC
Confidence 9988887654
No 55
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.83 E-value=1.5e-20 Score=191.47 Aligned_cols=115 Identities=29% Similarity=0.459 Sum_probs=103.9
Q ss_pred hhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy11166 622 ALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP 701 (1746)
Q Consensus 622 aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p 701 (1746)
.++.+|..++ +.+..++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||++
T Consensus 10 ~l~~~l~~il-~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (130)
T 3dai_A 10 ELRIFLRNVT-HRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPD 88 (130)
T ss_dssp HHHHHHHHHH-HHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHH-HHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3556677766 588899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHH----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy11166 702 GSQV----TEKAEKLLEEAKLALE-KYDDHLTQLEKTISQV 737 (1746)
Q Consensus 702 ~S~I----y~~A~~Lqk~fek~l~-el~~~l~qlE~~I~~~ 737 (1746)
+|++ +.+|..|++.+...+. ++.+.+...+.++...
T Consensus 89 ~s~~~~~i~~~A~~L~~~~~~~i~~el~~~~~~~ce~i~~~ 129 (130)
T 3dai_A 89 RDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQES 129 (130)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 9876 7999999999999996 7788888888877643
No 56
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.83 E-value=2.4e-21 Score=226.52 Aligned_cols=87 Identities=23% Similarity=0.437 Sum_probs=84.1
Q ss_pred cCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHH
Q psy11166 514 TEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLC 593 (1746)
Q Consensus 514 ~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek~f 593 (1746)
.++.++||+.||++..+||||+||++||||+||++||.++.|.++++|.+||+|||.||++||+++|.++.+|..|++.|
T Consensus 227 ~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f 306 (361)
T 2r10_A 227 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 306 (361)
T ss_dssp SSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q psy11166 594 VELLGKK 600 (1746)
Q Consensus 594 ee~lke~ 600 (1746)
++.+++.
T Consensus 307 ~~~~~~~ 313 (361)
T 2r10_A 307 NYLIQKE 313 (361)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999873
No 57
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.83 E-value=7.3e-21 Score=189.89 Aligned_cols=95 Identities=27% Similarity=0.576 Sum_probs=88.8
Q ss_pred HHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHH
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVT 706 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy 706 (1746)
+..++ ..++.++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||+++|.++
T Consensus 21 ~~~il-~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~ 99 (116)
T 3nxb_A 21 MYKVL-DVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYT 99 (116)
T ss_dssp HHHHH-HHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHH-HHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 44444 46778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11166 707 EKAEKLLEEAKLALEK 722 (1746)
Q Consensus 707 ~~A~~Lqk~fek~l~e 722 (1746)
.+|..|++.|++.+.+
T Consensus 100 ~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 100 KMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 58
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.83 E-value=6.1e-21 Score=199.69 Aligned_cols=103 Identities=22% Similarity=0.416 Sum_probs=94.8
Q ss_pred HhhhhhHHHHHHHHhhcCCccccccccCCcc--ccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Q psy11166 621 VALSFIFDDIVNNKLKNMADAWIFIKPVNKK--FFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLY 698 (1746)
Q Consensus 621 ~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k--~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tY 698 (1746)
..+..++..|+ +.|..++.+|||..||++. .+||||++|++||||+||++||+++.|.++++|..||+|||.||++|
T Consensus 31 ~~l~~~~~~il-~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~Y 109 (154)
T 4alg_A 31 NQLQYLHKVVM-KALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIY 109 (154)
T ss_dssp HHHHHHHHTHH-HHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34666766655 5788899999999999998 59999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11166 699 NGPGSQVTEKAEKLLEEAKLALEKYD 724 (1746)
Q Consensus 699 N~p~S~Iy~~A~~Lqk~fek~l~el~ 724 (1746)
|+++|.++.+|..|+++|++.+++++
T Consensus 110 N~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 110 NKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999888764
No 59
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.83 E-value=1.4e-21 Score=224.68 Aligned_cols=192 Identities=20% Similarity=0.270 Sum_probs=130.8
Q ss_pred cccccccCCCCCCCCCcCCCCCCCCccchhHHHHhhc---cccccc----hhhh--cccCCcceecchhhhhhhHHH-HH
Q psy11166 380 CGLVGHMRTNKACPQYSLTGQMPMNVAMTEEQEEEYG---KVIDCD----EEAL--VNVEGTKVTLSGKLIKHAEEV-KR 449 (1746)
Q Consensus 380 cg~~ghm~tnk~CP~Y~~~i~~PmdlamtEeQ~EE~e---kql~~d----~d~l--vnveGtkvklssk~le~aeE~-rR 449 (1746)
|.-.-+-...+.+|-|+..|++||++.+++++..+|. .++..| ..|| +|..|+.+......++..-+. ..
T Consensus 48 ~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~ 127 (311)
T 2r0y_A 48 FKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRDYEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVL 127 (311)
T ss_dssp HGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSCCCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred hHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHh
Confidence 4445555677789999999999999999988765443 123333 3444 455666665554433332111 11
Q ss_pred hhhccCCChhhhhcccccCCCCCCCchhhhhccCCCCCCCCCCcHHHHHHHHHHHH--------HHHHh------ccccC
Q psy11166 450 KSLLLKVPKEALHAKKKRKANNPDNQLDYLKRHQKPANRRRTDPVVVLTSILEKIL--------NEMRD------MSQTE 515 (1746)
Q Consensus 450 rSl~lk~PKe~i~~KKRRr~~~pdeeld~l~r~~k~~kRRradp~~~Ls~~LeeIL--------~eL~s------~~~~~ 515 (1746)
+. + ..+++.. .++ . ....+...+..++ ..+++ ....+
T Consensus 128 k~------k----~~~~~~~-i~~----~--------------~k~~l~~~~~~l~~~~~~~i~~~l~~~r~~k~~~~~~ 178 (311)
T 2r0y_A 128 KA------K----NLKRNYL-INS----E--------------VKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKV 178 (311)
T ss_dssp HH------H----TGGGCCB-CCH----H--------------HHHHHHHHHHHHHHCCHHHHHHHHHGGGSCSSCCCSS
T ss_pred hc------c----cCCCCCC-CCh----H--------------HHHHHHHHHHHHHhhhHHHHHHHHhccccccccccCC
Confidence 00 0 0000000 000 0 0011222222222 11111 11246
Q ss_pred CCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHHHHHH
Q psy11166 516 PNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVE 595 (1746)
Q Consensus 516 ~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~~gS~I~k~A~~Lek~fee 595 (1746)
+.++||+.||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+++|.++.+|..|++.|++
T Consensus 179 ~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~ 258 (311)
T 2r0y_A 179 KLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNY 258 (311)
T ss_dssp CTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q psy11166 596 LLGKK 600 (1746)
Q Consensus 596 ~lke~ 600 (1746)
.+++.
T Consensus 259 ~~~~~ 263 (311)
T 2r0y_A 259 LIQKE 263 (311)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99873
No 60
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=190.21 Aligned_cols=102 Identities=25% Similarity=0.389 Sum_probs=89.5
Q ss_pred hhhhHHHHHHHHhh-----cCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Q psy11166 623 LSFIFDDIVNNKLK-----NMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVL 697 (1746)
Q Consensus 623 LS~IL~eIV~~kLk-----~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~t 697 (1746)
+...+..|+...+. +++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++
T Consensus 14 l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 93 (123)
T 2dat_A 14 LTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQT 93 (123)
T ss_dssp HHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44445555542222 2346999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy11166 698 YNGPGSQVTEKAEKLLEEAKLALEKYD 724 (1746)
Q Consensus 698 YN~p~S~Iy~~A~~Lqk~fek~l~el~ 724 (1746)
||+++|.+|.+|..|++.|++.+++++
T Consensus 94 yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 94 FNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999988754
No 61
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.82 E-value=1.7e-20 Score=191.07 Aligned_cols=99 Identities=22% Similarity=0.427 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
.+..+|..++..|.. ++.++||..||++..+||||++|++||||+||++||.++.|.++++|.+||+|||.||++|
T Consensus 10 ~l~~~l~~il~~l~~----~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (130)
T 3dai_A 10 ELRIFLRNVTHRLAI----DKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEY 85 (130)
T ss_dssp HHHHHHHHHHHHHHT----SGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc----CCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 455556666666554 4779999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChH----HHHHHHHHHHHHHHhh
Q psy11166 576 NGAKSIL----TDAARRMLTLCVELLG 598 (1746)
Q Consensus 576 N~~gS~I----~k~A~~Lek~fee~lk 598 (1746)
|+++|++ +.+|..|+..+...++
T Consensus 86 N~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 86 NPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999976 6788888888888875
No 62
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=189.91 Aligned_cols=106 Identities=22% Similarity=0.337 Sum_probs=92.9
Q ss_pred hHhhhhhHHHHHHHHhh------cCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q psy11166 620 QVALSFIFDDIVNNKLK------NMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILS 693 (1746)
Q Consensus 620 q~aLS~IL~eIV~~kLk------~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~ 693 (1746)
+..+...+..++. .+. +++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.
T Consensus 15 ~~kl~~~~~~l~~-~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (130)
T 3k2j_A 15 TENLYFQSMQLYD-TVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFE 93 (130)
T ss_dssp HHHHHHHHHHHHH-HHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3345555555543 333 345599999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 694 NSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDH 726 (1746)
Q Consensus 694 NA~tYN~p~S~Iy~~A~~Lqk~fek~l~el~~~ 726 (1746)
||++||+++|.++.+|..|++.|++.++++...
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 94 NAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999887654
No 63
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=186.95 Aligned_cols=88 Identities=26% Similarity=0.369 Sum_probs=84.6
Q ss_pred CCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q psy11166 638 MADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAK 717 (1746)
Q Consensus 638 ~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fe 717 (1746)
++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||+||++||+++|.+|.+|..|++.|+
T Consensus 26 ~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~ 105 (116)
T 3iu5_A 26 RLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYL 105 (116)
T ss_dssp CBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy11166 718 LALEKYDD 725 (1746)
Q Consensus 718 k~l~el~~ 725 (1746)
+.++++.+
T Consensus 106 ~~~~~l~~ 113 (116)
T 3iu5_A 106 RTRNEFVQ 113 (116)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99988764
No 64
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=189.49 Aligned_cols=100 Identities=25% Similarity=0.421 Sum_probs=92.7
Q ss_pred hhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy11166 623 LSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPG 702 (1746)
Q Consensus 623 LS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~ 702 (1746)
+..++..++ ..|..++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||+++
T Consensus 14 ~~~~l~~il-~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (123)
T 3hme_A 14 IQQLLEHFL-RQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPD 92 (123)
T ss_dssp HHHHHHHHH-HHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHH-HHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 455666666 4788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy11166 703 SQVTEKAEKLLEEAKLALEKY 723 (1746)
Q Consensus 703 S~Iy~~A~~Lqk~fek~l~el 723 (1746)
|.++.+|..|++.|.+.+.+.
T Consensus 93 s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 93 TVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp SHHHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 65
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.82 E-value=2e-20 Score=188.98 Aligned_cols=87 Identities=24% Similarity=0.389 Sum_probs=84.0
Q ss_pred CCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHH
Q psy11166 638 MADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAK 717 (1746)
Q Consensus 638 ~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~fe 717 (1746)
++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||+++|.+|.+|..|++.|+
T Consensus 36 ~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~ 115 (124)
T 3mb4_A 36 RRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLL 115 (124)
T ss_dssp CBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy11166 718 LALEKYD 724 (1746)
Q Consensus 718 k~l~el~ 724 (1746)
+.++++.
T Consensus 116 ~~~~~l~ 122 (124)
T 3mb4_A 116 ETRRDLE 122 (124)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9988764
No 66
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.82 E-value=1.3e-20 Score=199.15 Aligned_cols=99 Identities=28% Similarity=0.481 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhcccCC
Q psy11166 498 TSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNG 577 (1746)
Q Consensus 498 s~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~YN~ 577 (1746)
...|..||..|..+ +.++||+.||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+
T Consensus 74 ~~~l~~il~~l~~~----~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 149 (174)
T 2ri7_A 74 YEGLKRVLRSLQAH----KMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNP 149 (174)
T ss_dssp HHHHHHHHHHHHTS----GGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhh----hhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45567777777764 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhhh
Q psy11166 578 AKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 578 ~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
++|.++.+|..|++.|++.+++.
T Consensus 150 ~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 150 SDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 67
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.81 E-value=1.5e-20 Score=188.68 Aligned_cols=97 Identities=34% Similarity=0.590 Sum_probs=88.0
Q ss_pred HHHHHHHhhcCCc---cccccccCCccc--cccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCC
Q psy11166 628 DDIVNNKLKNMAD---AWIFIKPVNKKF--FKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPG 702 (1746)
Q Consensus 628 ~eIV~~kLk~~~~---S~PF~~PVd~k~--vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~ 702 (1746)
..++. .+..++. +|||..||++.. +||||++|++||||+||++||.++.|.++++|..||+|||.||++||+++
T Consensus 15 ~~il~-~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 93 (120)
T 3jvl_A 15 SGILK-EMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPD 93 (120)
T ss_dssp HHHHH-HHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHH-HHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34443 4544444 899999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 703 SQVTEKAEKLLEEAKLALEKYDD 725 (1746)
Q Consensus 703 S~Iy~~A~~Lqk~fek~l~el~~ 725 (1746)
|.++.+|..|++.|++.+.+++.
T Consensus 94 s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 94 HEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999987764
No 68
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.81 E-value=2.6e-20 Score=189.87 Aligned_cols=98 Identities=33% Similarity=0.567 Sum_probs=87.5
Q ss_pred HHHHHHHHhhcCC---ccccccccCCccc--cccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCC
Q psy11166 627 FDDIVNNKLKNMA---DAWIFIKPVNKKF--FKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP 701 (1746)
Q Consensus 627 L~eIV~~kLk~~~---~S~PF~~PVd~k~--vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p 701 (1746)
+..|+. .|..++ .+|||..|||+.. +||||++|++||||+||++||.++.|.++++|..||+|||.||++||++
T Consensus 27 c~~il~-~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 105 (130)
T 2ouo_A 27 CSGILK-EMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPP 105 (130)
T ss_dssp HHHHHH-HHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHH-HHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 345554 444444 4899999999875 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 702 GSQVTEKAEKLLEEAKLALEKYDD 725 (1746)
Q Consensus 702 ~S~Iy~~A~~Lqk~fek~l~el~~ 725 (1746)
+|.++.+|..|++.|+..+.++++
T Consensus 106 ~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 106 DHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999987653
No 69
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=186.23 Aligned_cols=98 Identities=30% Similarity=0.418 Sum_probs=89.5
Q ss_pred hHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhC--CCCCCHHHHHHHHHHHHHHhcccCCCCC
Q psy11166 626 IFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQS--HKYHSRYEFLADIELILSNSVLYNGPGS 703 (1746)
Q Consensus 626 IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s--~~YkS~~EF~~DV~LIf~NA~tYN~p~S 703 (1746)
.|..|+ ..|..++.++||..||+. .+||||++|++||||+||++||.+ +.|.++++|..||+|||+||++||+++|
T Consensus 24 ~c~~il-~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s 101 (135)
T 2yyn_A 24 KCERLL-LFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDS 101 (135)
T ss_dssp HHHHHH-HHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHH-HHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 345555 367789999999999998 699999999999999999999998 5999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy11166 704 QVTEKAEKLLEEAKLALEKYDD 725 (1746)
Q Consensus 704 ~Iy~~A~~Lqk~fek~l~el~~ 725 (1746)
.++.+|..|++.|+..++++.+
T Consensus 102 ~i~~~A~~L~~~f~~~~~~~~~ 123 (135)
T 2yyn_A 102 EVANAGIKLENYFEELLKNLYP 123 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999987754
No 70
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.78 E-value=1.6e-19 Score=190.89 Aligned_cols=96 Identities=31% Similarity=0.507 Sum_probs=88.9
Q ss_pred HHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHH
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVT 706 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy 706 (1746)
+..++ ..|..++.++||..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||+||++||+++|.++
T Consensus 77 l~~il-~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~ 155 (174)
T 2ri7_A 77 LKRVL-RSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFY 155 (174)
T ss_dssp HHHHH-HHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred HHHHH-HHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 34444 36777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11166 707 EKAEKLLEEAKLALEKY 723 (1746)
Q Consensus 707 ~~A~~Lqk~fek~l~el 723 (1746)
.+|..|+++|++.++++
T Consensus 156 ~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 156 QCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988654
No 71
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.78 E-value=1.2e-19 Score=193.83 Aligned_cols=100 Identities=32% Similarity=0.465 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhc--CCCCCHHHHHHHHHHhhhhhc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRS--KKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~--g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
.....|+.||..|..+ +.+++|+.||+. .+||||++|++||||+||++||++ +.|.++++|.+||+|||.||+
T Consensus 81 ~~~~~c~~il~~l~~~----~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~ 155 (184)
T 3o36_A 81 IDKRKCERLLLFLYCH----EMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 155 (184)
T ss_dssp HHHHHHHHHHHHHHHS----TTCHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----hhhhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 4456677888887775 679999999996 489999999999999999999998 799999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 574 LYNGAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 574 ~YN~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
+||+++|.++.+|..|++.|++.+++.
T Consensus 156 ~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 156 EFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998763
No 72
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.78 E-value=3.3e-19 Score=185.35 Aligned_cols=90 Identities=28% Similarity=0.409 Sum_probs=85.3
Q ss_pred cCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Q psy11166 637 NMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEA 716 (1746)
Q Consensus 637 ~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~A~~Lqk~f 716 (1746)
+++.++||..||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||+++|.+|.+|..|+++|
T Consensus 45 ~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f 124 (150)
T 3tlp_A 45 GRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLL 124 (150)
T ss_dssp CCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy11166 717 KLALEKYDDH 726 (1746)
Q Consensus 717 ek~l~el~~~ 726 (1746)
++.++++...
T Consensus 125 ~~~~~~l~~~ 134 (150)
T 3tlp_A 125 KEKRKELGPL 134 (150)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHccCC
Confidence 9998887543
No 73
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=7.7e-19 Score=179.64 Aligned_cols=96 Identities=24% Similarity=0.410 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhc
Q psy11166 494 VVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573 (1746)
Q Consensus 494 ~~~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~ 573 (1746)
...|..+|..|++.|..+ +.++||+.| +||||++|++||||+||++||.++.|.++.+|.+||+|||.||+
T Consensus 10 ~~~L~~~~~~il~~l~~~----~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~ 80 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATD----KRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNAL 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHS----GGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC----ccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 345677777777777765 678999998 89999999999999999999999999999999999999999999
Q ss_pred ccCCCCChH----HHHHHHHHHHHHHHhh
Q psy11166 574 LYNGAKSIL----TDAARRMLTLCVELLG 598 (1746)
Q Consensus 574 ~YN~~gS~I----~k~A~~Lek~fee~lk 598 (1746)
+||+++|++ +.+|..|++.+...+.
T Consensus 81 ~yN~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 81 EYNPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp HSCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999964 6889999998888774
No 74
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.2e-19 Score=179.84 Aligned_cols=110 Identities=31% Similarity=0.511 Sum_probs=96.5
Q ss_pred HhhhhhHHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCC
Q psy11166 621 VALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 700 (1746)
Q Consensus 621 ~aLS~IL~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~ 700 (1746)
..++.+|..++ +.|..++.++||..| +||||++|++||||+||++||.++.|.++++|..||+|||.||++||+
T Consensus 11 ~~L~~~~~~il-~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~ 84 (131)
T 2dkw_A 11 RELRLFLRDVT-KRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 84 (131)
T ss_dssp HHHHHHHHHHH-HHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHH-HHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34666777776 478889999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCH----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy11166 701 PGSQ----VTEKAEKLLEEAKLALE-KYDDHLTQLEKTISQ 736 (1746)
Q Consensus 701 p~S~----Iy~~A~~Lqk~fek~l~-el~~~l~qlE~~I~~ 736 (1746)
++|+ ++.+|..|++.|...++ ++...+.....++..
T Consensus 85 ~~s~~~~~i~~~A~~L~~~~~~~l~~~l~~~f~~~~~~i~~ 125 (131)
T 2dkw_A 85 DKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLCEEIKE 125 (131)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9985 57999999999999885 666777776666653
No 75
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.75 E-value=1.5e-18 Score=185.53 Aligned_cols=96 Identities=30% Similarity=0.445 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhC--CCCCCHHHHHHHHHHHHHHhcccCCCCCH
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQS--HKYHSRYEFLADIELILSNSVLYNGPGSQ 704 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s--~~YkS~~EF~~DV~LIf~NA~tYN~p~S~ 704 (1746)
+..++ ..|..++.++||..||+.. +|+||++|++||||+||++||++ +.|.++++|.+||+|||+||++||+++|.
T Consensus 86 c~~il-~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 163 (184)
T 3o36_A 86 CERLL-LFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSE 163 (184)
T ss_dssp HHHHH-HHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHH-HHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 34444 3667788999999999965 89999999999999999999998 79999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11166 705 VTEKAEKLLEEAKLALEKYD 724 (1746)
Q Consensus 705 Iy~~A~~Lqk~fek~l~el~ 724 (1746)
++.+|..|+++|++.++++.
T Consensus 164 v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 164 VANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 76
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.74 E-value=2e-18 Score=187.85 Aligned_cols=100 Identities=31% Similarity=0.483 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhc---CCCCCHHHHHHHHHHhhhhh
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRS---KKYQSREEFLADVNQIVENS 572 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~---g~Y~SveEF~aDVrLIF~NC 572 (1746)
.....|+.||..|..+ +.++||+.||+. .+||||++|++||||+||++||++ +.|.++++|.+||+|||.||
T Consensus 81 ~~~~~c~~il~~l~~~----~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na 155 (207)
T 3u5n_A 81 VDQRKCERLLLYLYCH----ELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNC 155 (207)
T ss_dssp HHHHHHHHHHHHHHTS----TTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----cchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHH
Confidence 3456677888887765 789999999987 799999999999999999999997 79999999999999999999
Q ss_pred cccCC-----------------CCChHHHHHHHHHHHHHHHhhhh
Q psy11166 573 TLYNG-----------------AKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 573 ~~YN~-----------------~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
++||+ ++|.++++|..|+..|+++|++.
T Consensus 156 ~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~ 200 (207)
T 3u5n_A 156 ERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEI 200 (207)
T ss_dssp HHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHh
Confidence 99999 89999999999999999988764
No 77
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=184.94 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccC--CcccHHHHHHHhhcC---CCCCHHHHHHHHHHhhhhh
Q psy11166 498 TSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVT--RPMDLQTIRENLRSK---KYQSREEFLADVNQIVENS 572 (1746)
Q Consensus 498 s~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK--~PMDLsTIkkKLk~g---~Y~SveEF~aDVrLIF~NC 572 (1746)
...|+.||..|..+ +.++||++||+ |+||++|+ +||||+||++||+++ .|.++++|.+||+|||+||
T Consensus 78 ~~~c~~iL~~l~~~----~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~ 149 (189)
T 2ro1_A 78 QRKCERVLLALFCH----EPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQF 149 (189)
T ss_dssp HHHHHHHHHHHHHS----TTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccC----ccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHH
Confidence 35677888888764 78999999998 78999998 899999999999999 9999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHhhhhH
Q psy11166 573 TLYNGAKSILTDAARRMLTLCVELLGKKE 601 (1746)
Q Consensus 573 ~~YN~~gS~I~k~A~~Lek~fee~lke~E 601 (1746)
++|| ++|.++.+|..|+++|++.|++.-
T Consensus 150 ~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~ 177 (189)
T 2ro1_A 150 NKLT-EDKADVQSIIGLQRFFETRMNEAF 177 (189)
T ss_dssp HHHC-CSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 588899999999999999987653
No 78
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.70 E-value=1.5e-17 Score=181.05 Aligned_cols=97 Identities=27% Similarity=0.400 Sum_probs=88.2
Q ss_pred HHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhC---CCCCCHHHHHHHHHHHHHHhcccCC---
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQS---HKYHSRYEFLADIELILSNSVLYNG--- 700 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s---~~YkS~~EF~~DV~LIf~NA~tYN~--- 700 (1746)
+..|+ ..|..++.++||..||+. .+|+||++|++||||+||++||++ +.|.++++|..||+|||+||++||+
T Consensus 86 c~~il-~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s 163 (207)
T 3u5n_A 86 CERLL-LYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMK 163 (207)
T ss_dssp HHHHH-HHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcc
Confidence 34444 366678899999999987 799999999999999999999997 7999999999999999999999999
Q ss_pred --------------CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 701 --------------PGSQVTEKAEKLLEEAKLALEKYDD 725 (1746)
Q Consensus 701 --------------p~S~Iy~~A~~Lqk~fek~l~el~~ 725 (1746)
++|.++.+|..|+.+|+..++++.+
T Consensus 164 ~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p 202 (207)
T 3u5n_A 164 VVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYS 202 (207)
T ss_dssp HHC----------CCCCHHHHHHHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988754
No 79
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.70 E-value=8e-18 Score=181.37 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=81.0
Q ss_pred HhhcCCccccccccCCcccccccccccc--CccChHHHHHHHhCC---CCCCHHHHHHHHHHHHHHhcccCCCCCHHHHH
Q psy11166 634 KLKNMADAWIFIKPVNKKFFKDYYSVVQ--KPMDLETIGKKAQSH---KYHSRYEFLADIELILSNSVLYNGPGSQVTEK 708 (1746)
Q Consensus 634 kLk~~~~S~PF~~PVd~k~vPDYyeIIK--kPMDLsTIkkKL~s~---~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy~~ 708 (1746)
.|..++.+|||.+||+ |+||++|+ +||||+||++||.++ .|.++++|++||+|||+||++|| +++.++.+
T Consensus 87 ~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN-~~s~~~~~ 161 (189)
T 2ro1_A 87 ALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLT-EDKADVQS 161 (189)
T ss_dssp HHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHC-CSSCSSHH
T ss_pred hcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 5556889999999998 78999998 899999999999999 99999999999999999999999 58899999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11166 709 AEKLLEEAKLALEKYDD 725 (1746)
Q Consensus 709 A~~Lqk~fek~l~el~~ 725 (1746)
|..|+++|++.++++..
T Consensus 162 a~~L~~~Fe~~~~~~~~ 178 (189)
T 2ro1_A 162 IIGLQRFFETRMNEAFG 178 (189)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999988754
No 80
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=163.57 Aligned_cols=102 Identities=12% Similarity=0.293 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHhccccC--CCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhh
Q psy11166 495 VVLTSILEKILNEMRDMSQTE--PNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENS 572 (1746)
Q Consensus 495 ~~Ls~~LeeIL~eL~s~~~~~--~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC 572 (1746)
..++.++..|++.|+++.++. ..+.+|+..|+++ ||||. ++||+|.+|++||+++.|+++++|..||.|||+||
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NA 81 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERA 81 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 467889999999999998764 5599999999988 89998 99999999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHhhhh
Q psy11166 573 TLYNGAKSILTDAARRMLTLCVELLGKK 600 (1746)
Q Consensus 573 ~~YN~~gS~I~k~A~~Lek~fee~lke~ 600 (1746)
++||.+||+||.+|..|+++|.+...+.
T Consensus 82 r~yN~e~S~IyeDAv~Lq~~f~~~r~eL 109 (147)
T 3iu6_A 82 RRMNRTDSEIYEDAVELQQFFIKIRDEL 109 (147)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887664
No 81
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=150.06 Aligned_cols=102 Identities=11% Similarity=0.142 Sum_probs=87.5
Q ss_pred HhhhhhHHHHHHHHhh-----cCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Q psy11166 621 VALSFIFDDIVNNKLK-----NMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNS 695 (1746)
Q Consensus 621 ~aLS~IL~eIV~~kLk-----~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA 695 (1746)
..++.++.+++...+. ++..+.+|...|+++ |+||. ++||+|.+|++||.++.|+++++|..||.+||+||
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NA 81 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERA 81 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3455566665543332 334478999999988 89998 99999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy11166 696 VLYNGPGSQVTEKAEKLLEEAKLALEKYDDH 726 (1746)
Q Consensus 696 ~tYN~p~S~Iy~~A~~Lqk~fek~l~el~~~ 726 (1746)
++||.++|.||.+|..|+++|.+..+++...
T Consensus 82 r~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 82 RRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999887443
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.12 E-value=5.5e-11 Score=128.08 Aligned_cols=93 Identities=15% Similarity=0.267 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccccCCCCCCCCCcccccCCcccHHHHHHHhhcCCCCCHHHHHHHHHHhhhhhccc
Q psy11166 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLY 575 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~~~~~~~S~pFl~PVd~ke~PDYYeIIK~PMDLsTIkkKLk~g~Y~SveEF~aDVrLIF~NC~~Y 575 (1746)
.+...+++|+..|..+ .-++||+.. .++.||||.+|++||+++.|.++.+|++||.|||.||..|
T Consensus 75 el~~~l~~vl~~L~~~----~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~ 139 (183)
T 3lqh_A 75 ELQISLKQVLTALLNS----RTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINS 139 (183)
T ss_dssp HHHHHHHHHHHHHHTC----HHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----cccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Confidence 4555566666666654 558899883 2599999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhhhHHH
Q psy11166 576 NGAKSILTDAARRMLTLCVELLGKKEEL 603 (1746)
Q Consensus 576 N~~gS~I~k~A~~Lek~fee~lke~Ee~ 603 (1746)
|.+++.+.+++..|+.+|++.+++.-.+
T Consensus 140 ~~~~~e~~~ag~~l~~~f~~~l~~vfpw 167 (183)
T 3lqh_A 140 DGGQPEIKKANSMVKSFFIRQMERVFPW 167 (183)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCChhhhhhhhHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998775443
No 83
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.09 E-value=1.2e-10 Score=125.57 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=76.2
Q ss_pred HHHHHHHHhhcCCccccccccCCccccccccccccCccChHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCCCCHHH
Q psy11166 627 FDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVT 706 (1746)
Q Consensus 627 L~eIV~~kLk~~~~S~PF~~PVd~k~vPDYyeIIKkPMDLsTIkkKL~s~~YkS~~EF~~DV~LIf~NA~tYN~p~S~Iy 706 (1746)
|..|+ ..|..++.++||.. |. ++.||||.||++||+.+.|.|+.+|+.||.|||+||..||.+++.+.
T Consensus 80 l~~vl-~~L~~~~~s~~~~~---------y~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~ 147 (183)
T 3lqh_A 80 LKQVL-TALLNSRTTSHLLR---------YR--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIK 147 (183)
T ss_dssp HHHHH-HHHHTCHHHHHHHT---------CC--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHH-HHHHhccccHhhhh---------hh--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhh
Confidence 44444 36677788999976 32 49999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11166 707 EKAEKLLEEAKLALEKYDDH 726 (1746)
Q Consensus 707 ~~A~~Lqk~fek~l~el~~~ 726 (1746)
.++..|+.+|.+.++++.+.
T Consensus 148 ~ag~~l~~~f~~~l~~vfpw 167 (183)
T 3lqh_A 148 KANSMVKSFFIRQMERVFPW 167 (183)
T ss_dssp HHHHHHHHHHHHHHHHHCTT
T ss_pred hhhhHHHHHHHHHHHHHCCC
Confidence 99999999999999998665
No 84
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=98.67 E-value=6.9e-09 Score=117.13 Aligned_cols=75 Identities=33% Similarity=0.593 Sum_probs=56.1
Q ss_pred ccchhhhccCCCCCCCCCCc------cchhhcchhHHHHHHH-hhccceeehhccccCCCCCCcccHHHHHHHHHHHhhh
Q psy11166 19 EGGEEMAADGMETEPDDVKP------DVHKIIEQDIKGVRCR-LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKL 91 (1746)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~~~a~~-vaaK~~LAARvD~~~~~~~G~~G~~~reei~~ki~K~ 91 (1746)
=|.++....|+++.....+- ++.+..|+++|.+|.| ||+||+||||||+++++++|.+|.+||++|++||+||
T Consensus 179 LGaeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgk~~R~lA~K~alAaRiD~~~~~~~~~~G~~lr~~ie~rl~~~ 258 (260)
T 2ozb_B 179 LGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKW 258 (260)
T ss_dssp TTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHhhccCCCCCCeeeEeCCHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHh
Confidence 46677667788775433322 3467899999988888 8999999999999999999999999999999999999
Q ss_pred cC
Q psy11166 92 TE 93 (1746)
Q Consensus 92 ~E 93 (1746)
+|
T Consensus 259 ~e 260 (260)
T 2ozb_B 259 QE 260 (260)
T ss_dssp CC
T ss_pred cC
Confidence 97
No 85
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=98.37 E-value=1e-07 Score=101.10 Aligned_cols=82 Identities=23% Similarity=0.237 Sum_probs=51.6
Q ss_pred hcccchhhhcccchhhhccCCCCCCCCCCc------cchhhcchhHHHHHHH-hhccceeehhccccCCCCCCcccHHHH
Q psy11166 9 ADMEDEEEDNEGGEEMAADGMETEPDDVKP------DVHKIIEQDIKGVRCR-LAAKCALAARVDAAHDSVDGAIGRSFR 81 (1746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~~~a~~-vaaK~~LAARvD~~~~~~~G~~G~~~r 81 (1746)
|-|-.-.----|.++....|+++.....+- ++.+..|+++|.++.| ||+||+||||||++++ ..+|..|+
T Consensus 60 AK~PAsnIqvLGAeKalf~~l~t~~~~pk~G~Iy~s~lV~~~p~~~rgK~aR~LAaK~aLAARiD~~~g---~~~G~~lr 136 (169)
T 3gqu_A 60 AMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSG---EYIAEELK 136 (169)
T ss_dssp HTCCSHHHHTSCC----------------CCGGGGSHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHTC---CCCCTTHH
T ss_pred hhCCHHHHHHHhhhhHHHHHHhcCCCCCCCCEEEeCHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccCC---cccCHHHH
Confidence 344444444457777777788775543222 4466899999988888 8999999999999974 34699999
Q ss_pred HHHHHHHhhhcC
Q psy11166 82 EDIEKKLDKLTE 93 (1746)
Q Consensus 82 eei~~ki~K~~E 93 (1746)
++|+++|+||+|
T Consensus 137 eeie~riekl~e 148 (169)
T 3gqu_A 137 KELEARIKEIKE 148 (169)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHHH
Confidence 999999997766
No 86
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=98.36 E-value=1.2e-07 Score=106.64 Aligned_cols=75 Identities=29% Similarity=0.331 Sum_probs=48.6
Q ss_pred ccchhhhccCCCCCCCCCC-c-----cchhhcchhHHHHHHH-hhccceeehhccccCCCCCCcccHHHHHHHHHHHhhh
Q psy11166 19 EGGEEMAADGMETEPDDVK-P-----DVHKIIEQDIKGVRCR-LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKL 91 (1746)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~d~~~~a~~-vaaK~~LAARvD~~~~~~~G~~G~~~reei~~ki~K~ 91 (1746)
=|.++..-.|+.|.....+ | ++.+..|+++|.++.| |||||+||||||++++ ..+|.+||++|++||+||
T Consensus 165 LGAeKalfr~lkt~~~tPk~G~Iy~s~~V~~ap~~~rgkiaR~LAaK~aLAARiD~~~g---~~~G~~lre~ie~ri~kl 241 (255)
T 3icx_A 165 LGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSG---RFIGDQLNEQLKKRIDEI 241 (255)
T ss_dssp CC-------------------GGGGSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccCCCCCCeeEEecCHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccCC---cccCHHHHHHHHHHHHHH
Confidence 4666666677776544322 2 3466889999988888 8999999999999963 346999999999999999
Q ss_pred cCCCC
Q psy11166 92 TEPPP 96 (1746)
Q Consensus 92 ~EPPp 96 (1746)
+||-.
T Consensus 242 ~e~~~ 246 (255)
T 3icx_A 242 KEKFA 246 (255)
T ss_dssp HTTC-
T ss_pred hCccc
Confidence 99854
No 87
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=98.15 E-value=3.8e-07 Score=102.63 Aligned_cols=72 Identities=25% Similarity=0.334 Sum_probs=48.8
Q ss_pred cccchhhhccCC---CCC--C-CCCCc-----cchhhcchhHHHHHHH-hhccceeehhccccCCCCCCcccHHHHHHHH
Q psy11166 18 NEGGEEMAADGM---ETE--P-DDVKP-----DVHKIIEQDIKGVRCR-LAAKCALAARVDAAHDSVDGAIGRSFREDIE 85 (1746)
Q Consensus 18 ~~~~~~~~~~~~---~~~--~-~~~~~-----~~~~~~~~d~~~~a~~-vaaK~~LAARvD~~~~~~~G~~G~~~reei~ 85 (1746)
-=|.++....|+ +|. . ...-| ++.+..|+++|.+|.| ||+||+||||||++ +|.+|.+||++|+
T Consensus 174 iLGAeKalf~~l~~~~t~~~~~~pk~G~Iy~s~~V~~ap~~~rgK~aR~LAaK~aLAARiD~~----~g~~G~~lre~ie 249 (258)
T 1nt2_B 174 VIGAEKSLYKAFARMKKGKKAKIPKHGIIFLHPFIRTLPKAKRGKMARFLAAKLAIAAKIDYF----RGEIDESLYESIR 249 (258)
T ss_dssp TSSCC--------------------CCGGGGSHHHHTSCSSSSHHHHHHHHHHHHHHHHHHHH----TCSCCTHHHHHHH
T ss_pred HhccchHHHhhhhccccccCCCCCCcceEecCHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh----CCcccHHHHHHHH
Confidence 346666656565 664 2 12222 3467899999888887 89999999999998 4789999999999
Q ss_pred HHHhhhcC
Q psy11166 86 KKLDKLTE 93 (1746)
Q Consensus 86 ~ki~K~~E 93 (1746)
+||+||||
T Consensus 250 ~rl~k~~e 257 (258)
T 1nt2_B 250 RRYEELRR 257 (258)
T ss_dssp HHHHHCC-
T ss_pred HHHHHHhh
Confidence 99999998
No 88
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=98.09 E-value=8.4e-07 Score=104.65 Aligned_cols=74 Identities=28% Similarity=0.337 Sum_probs=55.0
Q ss_pred cchhhhccCCCCCCCCC-Cc-----cchhhcchhHHHHHHH-hhccceeehhccccCCCCCCcccHHHHHHHHHHHhhhc
Q psy11166 20 GGEEMAADGMETEPDDV-KP-----DVHKIIEQDIKGVRCR-LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLT 92 (1746)
Q Consensus 20 ~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~d~~~~a~~-vaaK~~LAARvD~~~~~~~G~~G~~~reei~~ki~K~~ 92 (1746)
|.+|..-.|+.|..... -| ++.+..|+++|.+++| |||||+||||||++++ ..+|.+||++|++||+||+
T Consensus 299 GAeKalfr~Lkt~~~tPk~G~Iy~s~~V~~ap~~~rgKiaR~LAaK~aLAARiD~~~g---~~~G~~lreeie~ri~kl~ 375 (388)
T 3pla_A 299 GAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSG---RFIGDQLNEQLKKRIDEIK 375 (388)
T ss_dssp SCHHHHHHHHHHTCCCCSCSGGGGSHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCC---CCCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhccCCCCCCeeEEecCHhhhhCCHHHhHHHHHHHHHHHHHHHhhcccCC---cccCHHHHHHHHHHHHHHh
Confidence 45555445555433221 12 4456889999998888 8999999999999963 3469999999999999999
Q ss_pred CCCC
Q psy11166 93 EPPP 96 (1746)
Q Consensus 93 EPPp 96 (1746)
||-.
T Consensus 376 e~~~ 379 (388)
T 3pla_A 376 EKFA 379 (388)
T ss_dssp CC--
T ss_pred Cccc
Confidence 9854
No 89
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=97.77 E-value=7.2e-06 Score=96.80 Aligned_cols=70 Identities=24% Similarity=0.288 Sum_probs=47.5
Q ss_pred ccchhhhccCCCCCCCCCC-c-----cchhhcchhHHHHHHH-hhccceeehhccccCCCCCCcc-cHHHHHHHHHHHhh
Q psy11166 19 EGGEEMAADGMETEPDDVK-P-----DVHKIIEQDIKGVRCR-LAAKCALAARVDAAHDSVDGAI-GRSFREDIEKKLDK 90 (1746)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~d~~~~a~~-vaaK~~LAARvD~~~~~~~G~~-G~~~reei~~ki~K 90 (1746)
=|.++..-.|+.|...-.+ | ++.+..|+++|.++.| |||||+||||||++ +|.. |..+|++|++||+|
T Consensus 299 LGAeKalf~~lkt~~~tPk~G~Iy~s~~V~~ap~~~kgKiaR~LAaK~aLAARiD~~----~g~~~G~~lre~ie~rl~~ 374 (376)
T 2nnw_A 299 LGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYF----SGEYIAEELKKELEARIRE 374 (376)
T ss_dssp TTCC-------------CCCCGGGGSHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH----TCCCCHHHHHHHHHHHHHH
T ss_pred hccchhhHHHhccCCCCCCceEEeCCHhhccCCHHHHHHHHHHHHHHHHHHHHHhhc----CCcccCHHHHHHHHHHHHH
Confidence 3666666677766533222 2 3566899999988888 89999999999999 4676 99999999999999
Q ss_pred hc
Q psy11166 91 LT 92 (1746)
Q Consensus 91 ~~ 92 (1746)
|.
T Consensus 375 ik 376 (376)
T 2nnw_A 375 IK 376 (376)
T ss_dssp HC
T ss_pred hC
Confidence 83
No 90
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=47.36 E-value=5.8 Score=46.62 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhc
Q psy11166 496 VLTSILEKILNEMRDM 511 (1746)
Q Consensus 496 ~Ls~~LeeIL~eL~s~ 511 (1746)
..+.-++..+..+.++
T Consensus 41 ~~~~~~e~~l~~L~d~ 56 (335)
T 4fp9_B 41 QGSLELERVMSSLLDM 56 (335)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHC
Confidence 3444466666666654
No 91
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=46.04 E-value=8.2 Score=30.06 Aligned_cols=19 Identities=32% Similarity=0.807 Sum_probs=15.8
Q ss_pred cccccccccccccCCCCCCCC
Q psy11166 374 KVKCGACGLVGHMRTNKACPQ 394 (1746)
Q Consensus 374 ~~~c~~cg~~ghm~tnk~CP~ 394 (1746)
...|-.||+.||+.. .||.
T Consensus 6 ~~~C~nCgk~GH~ar--~C~~ 24 (29)
T 1nc8_A 6 VIRCWNCGKEGHSAR--QCRA 24 (29)
T ss_dssp CCBCTTTSCBSSCGG--GCCS
T ss_pred CCEEEECCccccCHh--HCcc
Confidence 357999999999986 5875
No 92
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=45.73 E-value=18 Score=32.65 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=21.1
Q ss_pred CcccccccccccccccCCCCCCCCCcCC
Q psy11166 371 PDLKVKCGACGLVGHMRTNKACPQYSLT 398 (1746)
Q Consensus 371 ~~~~~~c~~cg~~ghm~tnk~CP~Y~~~ 398 (1746)
+..+.+|-.||+.||+. +.||.+...
T Consensus 20 ~~~~~~C~~Cge~GH~a--rdCp~~~~~ 45 (56)
T 1u6p_A 20 QLDRDQCAYCKEKGHWA--KDCPKKPRG 45 (56)
T ss_dssp TCCTTBCSSSCCBSSCG--GGCTTCCCS
T ss_pred CCCCCcceeCCCCCccc--ccCcCCccc
Confidence 34477999999999997 689998753
No 93
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=45.72 E-value=9 Score=29.20 Aligned_cols=19 Identities=32% Similarity=0.826 Sum_probs=16.1
Q ss_pred ccccccccccccCCCCCCCCC
Q psy11166 375 VKCGACGLVGHMRTNKACPQY 395 (1746)
Q Consensus 375 ~~c~~cg~~ghm~tnk~CP~Y 395 (1746)
..|-.||+.||+.. .||.-
T Consensus 3 ~~Cf~CG~~GH~ar--dC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKR--DCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTT--TTTCC
T ss_pred CeeEeCCCCCcccc--cCCCc
Confidence 47999999999986 69864
No 94
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=37.13 E-value=24 Score=29.89 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=19.9
Q ss_pred CcccccccccccccccCCCCCCCCCcC
Q psy11166 371 PDLKVKCGACGLVGHMRTNKACPQYSL 397 (1746)
Q Consensus 371 ~~~~~~c~~cg~~ghm~tnk~CP~Y~~ 397 (1746)
+..+..|-.||+.||+. +.||.-..
T Consensus 7 ~~~~~~C~~Cgk~GH~a--rdCP~~~~ 31 (40)
T 1a6b_B 7 QLDRDQCAYCKEKGHWA--KDCPKKPR 31 (40)
T ss_dssp SCCSSSCSSSCCTTCCT--TSCSSSCC
T ss_pred CCCCCeeeECCCCCcch--hhCcCCcc
Confidence 33467999999999996 67998653
No 95
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=35.55 E-value=10 Score=42.14 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=38.1
Q ss_pred HHHhCCC--ccccCCCCcCCccccccCCCchhhhhhccccccc-----ccccccCCCCceEEEecccccccCch
Q psy11166 1367 MGVAGGL--SRLSKMPGVAGGLSRLSKMPACNILLQGAQKKLL-----SGFSQTSVLPHTGFVYYSSLVQDYPA 1433 (1746)
Q Consensus 1367 I~~AGGL--~~~~~~~~~~~~~~~LAkmPAcNIq~LGAeK~l~-----~glst~~~~pk~G~Iy~s~lVq~~P~ 1433 (1746)
++.+|.| ..|| .+|+.||||+=-|+=-.-.-+ --+-++.+ +..||||||+|=+.+-|
T Consensus 99 ~~Qt~~l~~~~fa---------E~l~~L~s~kNyV~~VNDgrLGH~flIDiPa~~~-~r~ayiyQSDLG~Galp 162 (261)
T 4fbj_A 99 MAQTGKIDGNEFA---------ESVDQLSSAKNYVALVNDRRLGHMFLIDIPSNDQ-ETVGYIYQSDLGQGALP 162 (261)
T ss_dssp HHHHSCBCHHHHH---------HHGGGSCTTCEEEEEEEETTTTEEEEEEECCCSS-CCEEEEECCBCSCSSSC
T ss_pred hhhhcccchHHHH---------HHHhhhhcccCEEEEEcCCCcceeEEEecCCCCC-CcceEEEecccCCCCCc
Confidence 4567777 5566 789999999855543332222 22334444 99999999999887654
No 96
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=32.60 E-value=18 Score=29.68 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=13.3
Q ss_pred ccccccccccccCCCCCCC
Q psy11166 375 VKCGACGLVGHMRTNKACP 393 (1746)
Q Consensus 375 ~~c~~cg~~ghm~tnk~CP 393 (1746)
..|-.||+.||+. +.||
T Consensus 22 ~~C~~Cg~~GH~~--~~C~ 38 (39)
T 2a51_A 22 EGCWNCGSKEHRF--AQCP 38 (39)
T ss_dssp SSCTTTCCSSSCT--TTSC
T ss_pred CccccCCCCCCcc--CcCc
Confidence 4799999999985 5566
No 97
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=30.64 E-value=21 Score=29.34 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=15.2
Q ss_pred ccccccccccccCCCCCCCC
Q psy11166 375 VKCGACGLVGHMRTNKACPQ 394 (1746)
Q Consensus 375 ~~c~~cg~~ghm~tnk~CP~ 394 (1746)
++|-.||+.||+.. .||.
T Consensus 1 i~C~~Cg~~GH~a~--~C~~ 18 (39)
T 2a51_A 1 LTCFNCGKPGHTAR--MCRQ 18 (39)
T ss_dssp CBCTTTCCBSSCTT--TCCS
T ss_pred CeeeccCCCCcccc--cCCC
Confidence 47999999999975 6885
No 98
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=27.54 E-value=19 Score=30.95 Aligned_cols=18 Identities=39% Similarity=0.981 Sum_probs=11.5
Q ss_pred ccccccccccccCCCCCCCC
Q psy11166 375 VKCGACGLVGHMRTNKACPQ 394 (1746)
Q Consensus 375 ~~c~~cg~~ghm~tnk~CP~ 394 (1746)
..|-.||+.||+. +.||.
T Consensus 28 ~~C~~Cg~~GH~~--~~C~~ 45 (49)
T 2ec7_A 28 QGCWKCGKTGHVM--AKCPE 45 (49)
T ss_dssp CSCSSSCCSSCCG--GGCCS
T ss_pred CeeCcCCCcCCcc--CCCcC
Confidence 3577777777765 55664
No 99
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=26.71 E-value=31 Score=29.70 Aligned_cols=20 Identities=30% Similarity=0.715 Sum_probs=16.3
Q ss_pred cccccccccccccCCCCCCCCC
Q psy11166 374 KVKCGACGLVGHMRTNKACPQY 395 (1746)
Q Consensus 374 ~~~c~~cg~~ghm~tnk~CP~Y 395 (1746)
..+|-.||+.||+.. .||.-
T Consensus 6 ~~~C~~Cg~~GH~a~--~C~~~ 25 (49)
T 2ec7_A 6 VIRCWNCGKEGHSAR--QCRAP 25 (49)
T ss_dssp CCBCTTTCCBTCCTT--TCCCS
T ss_pred cCeeeecCCCCcChh--hCcCC
Confidence 458999999999974 78763
No 100
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=26.41 E-value=37 Score=31.92 Aligned_cols=19 Identities=26% Similarity=0.614 Sum_probs=12.1
Q ss_pred cccccccccccccCCCCCCCC
Q psy11166 374 KVKCGACGLVGHMRTNKACPQ 394 (1746)
Q Consensus 374 ~~~c~~cg~~ghm~tnk~CP~ 394 (1746)
..+|-.||+.||+.. .||.
T Consensus 24 ~~~C~~Cg~~GH~a~--~C~~ 42 (74)
T 2li8_A 24 GDRCYNCGGLDHHAK--ECKL 42 (74)
T ss_dssp TSCCTTTCCSSSCTT--TCSS
T ss_pred CCcccccCCcCcCcc--cCCC
Confidence 346777777777753 4653
No 101
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.56 E-value=35 Score=35.81 Aligned_cols=19 Identities=37% Similarity=0.800 Sum_probs=11.1
Q ss_pred ccccccccccccCCCCCCCCC
Q psy11166 375 VKCGACGLVGHMRTNKACPQY 395 (1746)
Q Consensus 375 ~~c~~cg~~ghm~tnk~CP~Y 395 (1746)
.+|-.||+.|||. +.||.-
T Consensus 120 ~~C~~Cg~~GH~~--r~Cp~~ 138 (148)
T 3ts2_A 120 KKCHFCQSINHMV--ASCPLK 138 (148)
T ss_dssp CCCTTTCCSSCCG--GGCTTT
T ss_pred CcccccCCcCCEe--ccCcCC
Confidence 4566666666663 456643
No 102
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=22.35 E-value=36 Score=27.61 Aligned_cols=17 Identities=35% Similarity=0.948 Sum_probs=13.2
Q ss_pred cccccccccccCCCCCCCC
Q psy11166 376 KCGACGLVGHMRTNKACPQ 394 (1746)
Q Consensus 376 ~c~~cg~~ghm~tnk~CP~ 394 (1746)
+|-.||+.||+.. .||.
T Consensus 2 ~C~~Cg~~GH~~~--~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSS--QCRA 18 (37)
T ss_dssp CBSSSCCSSCCTT--TSSC
T ss_pred cccccCCCCcchh--hCcC
Confidence 5888999999854 5775
No 103
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.48 E-value=37 Score=30.71 Aligned_cols=21 Identities=33% Similarity=0.732 Sum_probs=16.9
Q ss_pred cccccccccccccCCCCCCCCCc
Q psy11166 374 KVKCGACGLVGHMRTNKACPQYS 396 (1746)
Q Consensus 374 ~~~c~~cg~~ghm~tnk~CP~Y~ 396 (1746)
...|-.||+.||+. +.||.-.
T Consensus 29 ~~~C~~Cg~~GH~a--r~Cp~~~ 49 (63)
T 2cqf_A 29 PKKCHFCQSISHMV--ASCPLKA 49 (63)
T ss_dssp SSCCTTTCCSSSCT--TTCTGGG
T ss_pred CCccCCcCCcCCcc--CcCCCcc
Confidence 45899999999986 7898753
Done!