RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11166
(1746 letters)
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 206 bits (525), Expect = 5e-58
Identities = 109/320 (34%), Positives = 161/320 (50%), Gaps = 34/320 (10%)
Query: 1220 ESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGN 1279
E D E +LI++A +ID EI L+ E Y FPEL +LV +Y + V LGN
Sbjct: 110 EVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSSLVPDNEQYAKLVSALGN 169
Query: 1280 DLDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSI 1339
+ K + + ++ A + G LSEE++ + + ++ EL + + +
Sbjct: 170 RENINKESLKDLGFALPDIAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQL 229
Query: 1340 FEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILL 1399
EY+ES+M+ IAPNL+A+VG A+++ AGGL+R L+KMPA I +
Sbjct: 230 EEYIESKMSEIAPNLTALVGPVLGARLISHAGGLTR-------------LAKMPASTIQV 276
Query: 1400 QGAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVA 1459
GA+K L + P G +Y S L+Q K+ P R K AR +A
Sbjct: 277 LGAEKALFRALKTGAKTPKYGVIYQSPLIQ--------KS-------PPWQRGKIARALA 321
Query: 1460 AKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKPIEAGRKKRGG 1519
AK A+AAR+DA D G S RE++EK+++KL E PP P E +K+R G
Sbjct: 322 AKLAIAARIDAFSGEPD---GISLREELEKRIEKLKEKPP---KPPTKAKPERDKKERPG 375
Query: 1520 KRVRKMKERYAMTELRKQQN 1539
+ RK KE+ A +E R QN
Sbjct: 376 RYRRKKKEKKAKSERRGLQN 395
Score = 70.1 bits (172), Expect = 3e-12
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 55 LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKPIEAGRKKR 114
LAAK A+AAR+DA D G S RE++EK+++KL E PP P E +K+R
Sbjct: 320 LAAKLAIAARIDAFSGEPD---GISLREELEKRIEKLKEKPP---KPPTKAKPERDKKER 373
Query: 115 GGKRVRKMKERYAMTELRKQQN 136
G+ RK KE+ A +E R QN
Sbjct: 374 PGRYRRKKKEKKAKSERRGLQN 395
>gnl|CDD|220400 pfam09785, Prp31_C, Prp31 C terminal domain. This is the C terminal
domain of the pre-mRNA processing factor Prp31. Prp31 is
required for U4/U6.U5 tri-snRNP formation. In humans this
protein has been linked to autosomal dominant retinitis
pigmentosa.
Length = 124
Score = 172 bits (439), Expect = 5e-50
Identities = 67/130 (51%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
Query: 1499 PVKFVKPLPKPIEAGRKKRGGKRVRKMKERYAMTELRKQQNRLSFADIEDDAYQE-DLGY 1557
P K VK LP P + +KKRGG+R RKMKER+AMTELRK QNR+ F E++ + D G
Sbjct: 1 PAKGVKALPIPDDKPKKKRGGRRFRKMKERFAMTELRKAQNRMEFGKEEEEVGYDFDEGV 60
Query: 1558 SRGTIGKTGAGRIRTPQVDEKTKVRISKTLQKNLQRQQVWGGSTTVKKQVSGTTSSIAFT 1617
G +G G GRIR Q D KTK ++SK ++K LQ G SGT SS+AFT
Sbjct: 61 GLGMLGSGGGGRIRLSQKDAKTKAKLSKKMKKRLQSSGATNGGV------SGTASSLAFT 114
Query: 1618 PLQGLEIVNP 1627
PLQG+E+VNP
Sbjct: 115 PLQGIELVNP 124
Score = 158 bits (402), Expect = 5e-45
Identities = 62/123 (50%), Positives = 76/123 (61%), Gaps = 7/123 (5%)
Query: 96 PVKFVKPLPKPIEAGRKKRGGKRVRKMKERYAMTELRKQQNRLSFADIEDDAYQE-DLGY 154
P K VK LP P + +KKRGG+R RKMKER+AMTELRK QNR+ F E++ + D G
Sbjct: 1 PAKGVKALPIPDDKPKKKRGGRRFRKMKERFAMTELRKAQNRMEFGKEEEEVGYDFDEGV 60
Query: 155 SRGTIGKTGAGRIRTPQVDEKTKVRISKTLQKNLQRQQVWGGSTTVKKQVSGTTSSIAFT 214
G +G G GRIR Q D KTK ++SK ++K LQ G SGT SS+AFT
Sbjct: 61 GLGMLGSGGGGRIRLSQKDAKTKAKLSKKMKKRLQSSGATNGGV------SGTASSLAFT 114
Query: 215 PLQ 217
PLQ
Sbjct: 115 PLQ 117
>gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily. Human
TAFII250 (or TAF250) is the largest subunit of TFIID, a
large multi-domain complex, which initiates the assembly
of the transcription machinery. TAFII250 contains two
bromodomains that specifically bind to acetylated
histone H4. Bromodomains are 110 amino acid long
domains, that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 112
Score = 169 bits (431), Expect = 4e-49
Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 4/116 (3%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ 556
L+ IL++I+NE++++ + P F PVN K VPDYYKI+ RPMDLQTIR+ + KYQ
Sbjct: 1 LSFILDEIVNELKNLPDSWP----FHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQ 56
Query: 557 SREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELLMRLEKAIN 612
SREEFL D+ IV+NS LYNG S+ T A+ ML L ELL ++EE L +LEK IN
Sbjct: 57 SREEFLEDIELIVDNSVLYNGPDSVYTKKAKEMLELAEELLAEREEKLTQLEKNIN 112
Score = 159 bits (405), Expect = 1e-45
Identities = 66/112 (58%), Positives = 84/112 (75%), Gaps = 1/112 (0%)
Query: 623 LSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRY 682
LSFI D+IVN +LKN+ D+W F PVNKK DYY ++++PMDL+TI KK HKY SR
Sbjct: 1 LSFILDEIVN-ELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSRE 59
Query: 683 EFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTI 734
EFL DIELI+ NSVLYNGP S T+KA+++LE A+ L + ++ LTQLEK I
Sbjct: 60 EFLEDIELIVDNSVLYNGPDSVYTKKAKEMLELAEELLAEREEKLTQLEKNI 111
Score = 78.5 bits (194), Expect = 3e-17
Identities = 30/47 (63%), Positives = 35/47 (74%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQ 1111
+ ++PMDL+TI KK HKY SR EFL DIELI+ NSVLYNGP S
Sbjct: 35 KIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81
>gnl|CDD|216709 pfam01798, Nop, Putative snoRNA binding domain. This family consists
of various Pre RNA processing ribonucleoproteins. The
function of the aligned region is unknown however it may
be a common RNA or snoRNA or Nop1p binding domain. Nop5p
(Nop58p) from yeast is the protein component of a
ribonucleoprotein protein required for pre-18s rRNA
processing and is suggested to function with Nop1p in a
snoRNA complex. Nop56p and Nop5p interact with Nop1p and
are required for ribosome biogenesis. Prp31p is required
for pre-mRNA splicing in S. cerevisiae.
Length = 149
Score = 143 bits (363), Expect = 2e-39
Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 28/173 (16%)
Query: 1325 ACDMAFELNQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAG 1384
C+ L +++ + EY+ES+M+ IAPNL+A+VG A+++ AG
Sbjct: 5 FCERILSLAEYRKQLEEYIESKMSKIAPNLTALVGELVGARLI-------------SHAG 51
Query: 1385 GLSRLSKMPACNILLQGAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQ 1444
L+ L+K+PA I + GA+K L + P G +Y+S L+Q KA
Sbjct: 52 SLTNLAKLPASTIQVLGAEKALFRALKTKAKTPKYGLIYHSPLIQ--------KA----- 98
Query: 1445 DYPADMRRKAARLVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEP 1497
P +R K AR++AAK ALAAR+DA + DG+ G RE++EK+L+KL E
Sbjct: 99 --PPKVRGKIARMLAAKLALAARIDAFSEEPDGSFGIELREELEKRLEKLEEK 149
Score = 55.0 bits (133), Expect = 1e-08
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 41 HKIIEQDIKGVRCR----LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEP 94
+I++ VR + LAAK ALAAR+DA + DG+ G RE++EK+L+KL E
Sbjct: 92 SPLIQKAPPKVRGKIARMLAAKLALAARIDAFSEEPDGSFGIELREELEKRLEKLEEK 149
>gnl|CDD|197636 smart00297, BROMO, bromo domain.
Length = 107
Score = 107 bits (270), Expect = 2e-27
Identities = 41/96 (42%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 619 DQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKY 678
Q L + +++ KL + +W F+KPV++K DYY +++KPMDL+TI KK ++ KY
Sbjct: 4 LQKKLQELLKAVLD-KLDSHPLSWPFLKPVSRKEAPDYYDIIKKPMDLKTIKKKLENGKY 62
Query: 679 HSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLE 714
S EF+AD L+ SN+ YNGP S+V + A+KL +
Sbjct: 63 SSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEK 98
Score = 101 bits (255), Expect = 2e-25
Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 490 RTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIREN 549
L +L+ +L+++ + P F PV+ K PDYY I+ +PMDL+TI++
Sbjct: 1 DPKLQKKLQELLKAVLDKLDSHPLSWP----FLKPVSRKEAPDYYDIIKKPMDLKTIKKK 56
Query: 550 LRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELL 597
L + KY S EEF+AD N + N+ YNG S + A+++ + L
Sbjct: 57 LENGKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKL 104
Score = 67.3 bits (165), Expect = 3e-13
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+KPMDL+TI KK ++ KY S EF+AD L+ SN+ YNGP S+V
Sbjct: 45 KKPMDLKTIKKKLENGKYSSVEEFVADFNLMFSNARTYNGPDSEV 89
>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain. Bromodomains are found in many
chromatin-associated proteins and in nuclear histone
acetyltransferases. They interact specifically with
acetylated lysine.
Length = 99
Score = 103 bits (258), Expect = 6e-26
Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ 556
L L +L+ + + F PV+ K PDYY+++ PMDL TI++ L++ +Y+
Sbjct: 1 LKKKLRSLLDAL--KKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYK 58
Query: 557 SREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELL 597
S EEF ADV I N+ YNG S + A+++ L +LL
Sbjct: 59 SLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
Score = 102 bits (257), Expect = 7e-26
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 619 DQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKY 678
+ L + D + K + F++PV+ K DYY V++ PMDL TI KK ++ +Y
Sbjct: 1 LKKKLRSLLDALKKLKRD---LSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEY 57
Query: 679 HSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAK 717
S EF AD+ LI SN+ YNGPGS + + A+KL + +
Sbjct: 58 KSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFE 96
Score = 62.8 bits (153), Expect = 9e-12
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ PMDL TI KK ++ +Y S EF AD+ LI SN+ YNGPGS +
Sbjct: 40 KNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPI 84
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 111 bits (280), Expect = 9e-26
Identities = 91/307 (29%), Positives = 148/307 (48%), Gaps = 38/307 (12%)
Query: 1227 LIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGNDLDQTKN 1286
L ++A +ID I L E Y+ FPELD LV EY++ V ELG+ + T+
Sbjct: 140 LAIQAIRAIDDIDKTINLFSERLREWYSLHFPELDELVKKHEEYVKLVSELGDRENYTR- 198
Query: 1287 NETLQQV-LTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSIFEYVES 1345
E L+++ L + ++ A + G LSE +L + + + +L + + + +Y+E+
Sbjct: 199 -EKLKKLGLPENKARKIAEAAKKSMGADLSEFDLEAIKKLANEILDLYKLREELEDYLET 257
Query: 1346 RMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQKK 1405
M +APNL+A+VG S A+++ +AGGL L+KMPA I + GA+K
Sbjct: 258 VMKEVAPNLTALVGPSLGARLISLAGGLEE-------------LAKMPASTIQVLGAEKA 304
Query: 1406 LLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALA 1465
L + P G ++ YPA + P R K AR +AAK A+A
Sbjct: 305 LFRHLRTGAKPPKHGVIF------QYPA---------IHGSPWWQRGKIARALAAKLAIA 349
Query: 1466 ARVDAAHDSVDGAIGRSFREDIEKKLD----KLTEPPPVKFVKPLPKPIEAGRKKRGGKR 1521
ARVD IG +E++ K+++ K +PP K + P+ + +K++ +
Sbjct: 350 ARVDYFSGRY---IGDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGK 406
Query: 1522 VRKMKER 1528
RK K R
Sbjct: 407 KRKKKGR 413
Score = 46.9 bits (112), Expect = 7e-05
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 55 LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLD----KLTEPPPVKFVKPLPKPIEAG 110
LAAK A+AARVD IG +E++ K+++ K +PP K + P+ +
Sbjct: 342 LAAKLAIAARVDYFSGRY---IGDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKK 398
Query: 111 RKKRGGKRVRKMKER 125
+K++ + RK K R
Sbjct: 399 KKRKKKGKKRKKKGR 413
>gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily. Gcn5p
is a histone acetyltransferase (HAT) which mediates
acetylation of histones at lysine residues; such
acetylation is generally correlated with the activation
of transcription. Bromodomains are 110 amino acid long
domains, that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 101
Score = 101 bits (254), Expect = 2e-25
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
+ LKN AW F++PV+K+ DYY V++KPMDL T+ +K ++ Y + EF+AD++LI
Sbjct: 11 DSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIF 70
Query: 693 SNSVLYNGPGSQVTEKAEKLLEEAKLALEKY 723
N LYNGP ++ + A KL + L++
Sbjct: 71 DNCRLYNGPDTEYYKCANKLEKFFWKKLKEL 101
Score = 96.9 bits (242), Expect = 1e-23
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREE 560
L+K+L+ +++ P F PV+ + PDYY ++ +PMDL T+ E L + Y + EE
Sbjct: 6 LKKVLDSLKNHKSAWP----FLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEE 61
Query: 561 FLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELL 597
F+AD+ I +N LYNG + A ++ + L
Sbjct: 62 FVADLKLIFDNCRLYNGPDTEYYKCANKLEKFFWKKL 98
Score = 56.4 bits (137), Expect = 1e-09
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGS 1110
V +KPMDL T+ +K ++ Y + EF+AD++LI N LYNGP +
Sbjct: 36 DVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDT 81
>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain. Bromodomains are 110 amino
acid long domains, that are found in many chromatin
associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 84
Score = 89.0 bits (221), Expect = 3e-21
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
Query: 623 LSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRY 682
I +D++ + A F++PV+ + + DYY V+++PMDL TI +K +S KY S
Sbjct: 1 CLEILEDLMEHP-----LAEPFLEPVDPEEYPDYYEVIKEPMDLSTIRQKLKSGKYKSLA 55
Query: 683 EFLADIELILSNSVLYNGPGSQVTEKAEK 711
EFL D+ELI SN++ YNG S + + A+K
Sbjct: 56 EFLKDVELIFSNAITYNGEDSDIYKDAKK 84
Score = 88.6 bits (220), Expect = 4e-21
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREE 560
+IL ++ + P + F PV+ + PDYY+++ PMDL TIR+ L+S KY+S E
Sbjct: 1 CLEILEDLMEH----PLAEPFLEPVDPEEYPDYYEVIKEPMDLSTIRQKLKSGKYKSLAE 56
Query: 561 FLADVNQIVENSTLYNGAKSILTDAARR 588
FL DV I N+ YNG S + A++
Sbjct: 57 FLKDVELIFSNAITYNGEDSDIYKDAKK 84
Score = 61.3 bits (149), Expect = 2e-11
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+PMDL TI +K +S KY S EFL D+ELI SN++ YNG S +
Sbjct: 35 EPMDLSTIRQKLKSGKYKSLAEFLKDVELIFSNAITYNGEDSDI 78
>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin
remodeling, contains bromodomain [Chromatin structure
and dynamics / Transcription].
Length = 371
Score = 93.7 bits (233), Expect = 5e-20
Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 17/227 (7%)
Query: 482 HQKPANRRRTDPVVVLTSILEKILNEMRDMSQTEP-NVKQFSFP----VNAKLVPDYYKI 536
H K + ++R P + + + Q + + S + + PDYY+I
Sbjct: 125 HLKTSVKKRKTPKIEDELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEI 184
Query: 537 VTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVEL 596
+ PMDL TI++ L++ +Y+S EEF++D+N + +N LYNG S + A+ + ++L
Sbjct: 185 IKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKL 244
Query: 597 LGK--KEELLMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFK 654
+ + +E L + ++ + + S + + + AW F++PV+ +
Sbjct: 245 IEEIPEEMLELSIKP-----GREEREERESVLITNSQAH-----VGAWPFLRPVSDEEVP 294
Query: 655 DYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP 701
DYY ++ PMDL T K +++ Y F+ D +L N V+YNG
Sbjct: 295 DYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGE 341
Score = 78.7 bits (194), Expect = 5e-15
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 639 ADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLY 698
+ IF+ +K+ + DYY +++ PMDL TI KK ++ +Y S EF++D+ L+ N LY
Sbjct: 164 FLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLY 223
Query: 699 NGPGSQVTEKAEKL----LEEAKLALEKYDDHLTQLEKT 733
NGP S V A++L L+ + E+ + + +
Sbjct: 224 NGPDSSVYVDAKELEKYFLKLIEEIPEEMLELSIKPGRE 262
Score = 56.4 bits (136), Expect = 7e-08
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ + PMDL TI KK ++ +Y S EF++D+ L+ N LYNGP S V
Sbjct: 183 EIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSV 230
Score = 35.9 bits (83), Expect = 0.19
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 524 PVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAK 579
PV+ + VPDYYK + PMDL T LR+ Y+ E F+ D +N +YNG
Sbjct: 287 PVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEV 342
>gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like
subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and
2B (BAZ2B) were identified as a novel human bromodomain
gene by cDNA library screening. BAZ2A is also known as
Tip5 (Transcription termination factor I-interacting
protein 5) and hWALp3. The proteins may play roles in
transcriptional regulation. Human Tip5 is part of a
complex termed NoRC (nucleolar remodeling complex),
which induces nucleosome sliding and may play a role in
the regulation of the rDNA locus. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 97
Score = 83.2 bits (206), Expect = 6e-19
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 502 EKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEF 561
E IL+EM + + F PVN KLVP Y KI+ +PMD TIRE L S +Y++ EEF
Sbjct: 6 ETILDEM----EAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEF 61
Query: 562 LADVNQIVENSTLYN 576
DV + +N +N
Sbjct: 62 AEDVRLVFDNCETFN 76
Score = 68.2 bits (167), Expect = 1e-13
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 639 ADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLY 698
DAW F++PVN K Y +++KPMD TI +K +S +Y + EF D+ L+ N +
Sbjct: 16 EDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETF 75
Query: 699 NGPGSQV 705
N S+V
Sbjct: 76 NEDDSEV 82
Score = 44.3 bits (105), Expect = 3e-05
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1066 VSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ +KPMD TI +K +S +Y + EF D+ L+ N +N S+V
Sbjct: 36 IIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEV 82
>gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily,
repeat II. Human Brdt is a testis-specific member of the
BET subfamily of bromodomain proteins; the first
bromodomain in Brdt has been shown to be essential for
male germ cell differentiation. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 102
Score = 76.2 bits (188), Expect = 2e-16
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 636 KNMADAWIFIKPVNKKFFK--DYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILS 693
K+ A AW F KPV+ + DY+ +++ PMDL TI KK + +Y EF AD+ L+ S
Sbjct: 16 KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFS 75
Query: 694 NSVLYNGPGSQVTEKAEKL 712
N YN P V A KL
Sbjct: 76 NCYKYNPPDHPVHAMARKL 94
Score = 73.9 bits (182), Expect = 1e-15
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 503 KILNEMRDMSQTEPNVKQFSFPVNAKL--VPDYYKIVTRPMDLQTIRENLRSKKYQSREE 560
IL E+ + + F PV+ + + DY+ I+ PMDL TI++ L +++Y +E
Sbjct: 7 GILKELFS-KKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQE 65
Query: 561 FLADVNQIVENSTLYNGAKSILTDAARRM 589
F ADV + N YN + AR++
Sbjct: 66 FAADVRLMFSNCYKYNPPDHPVHAMARKL 94
Score = 52.3 bits (126), Expect = 4e-08
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMDL TI KK + +Y EF AD+ L+ SN YN P V
Sbjct: 44 HPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPV 87
>gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily
specific to plants. Might function as a global
transcription factor. Bromodomains are 110 amino acid
long domains, that are found in many chromatin
associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 99
Score = 75.8 bits (187), Expect = 2e-16
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 633 NKLKNMADAWIFIKPVNKKFFK--DYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIEL 690
KL W+F PV+ DY+ +++KPMDL T+ KK + +Y S EF AD+ L
Sbjct: 10 RKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRL 69
Query: 691 ILSNSVLYNGPGSQVTEKAEKLLEE 715
+N++ YN PG+ V A++LL+
Sbjct: 70 TFANAMRYNPPGNDVHTMAKELLKI 94
Score = 58.9 bits (143), Expect = 2e-10
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 521 FSFPVNAKL--VPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576
F+ PV+ +PDY+ I+ +PMDL T+++ L +Y S EEF ADV N+ YN
Sbjct: 21 FNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYN 78
Score = 52.7 bits (127), Expect = 3e-08
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ +KPMDL T+ KK + +Y S EF AD+ L +N++ YN PG+ V
Sbjct: 37 DIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDV 84
>gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily. SPT7 is
a yeast protein that functions as a component of the
transcription regulatory histone acetylation (HAT)
complexes SAGA, SALSA, and SLIK. SAGA is involved in the
RNA polymerase II-dependent transcriptional regulation
of about 10% of all yeast genes. The SPT7 bromodomain
has been shown to weakly interact with acetylated
histone H3, but not H4. The human representative of this
subfamily is cat eye syndrome critical region protein 2
(CECR2). Bromodomains are 110 amino acid long domains,
that are found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 112
Score = 75.9 bits (187), Expect = 3e-16
Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 10/107 (9%)
Query: 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREE 560
L+K+LNE++ + + F V+ + PDYY I+ +PMDL T+ + L++ +Y+S+ E
Sbjct: 12 LDKVLNELKTYT---EHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAE 68
Query: 561 FLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELLMRL 607
F+ D+N I +N LYN S L + KK E L++L
Sbjct: 69 FVDDLNLIWKNCLLYNSDPS-------HPLRRHANFMKKKAEHLLKL 108
Score = 70.2 bits (172), Expect = 3e-14
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 9/95 (9%)
Query: 629 DIVNNKLKNMAD-AWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLAD 687
D V N+LK + + F+ V+K+ DYY +++KPMDL T+ KK ++ +Y S+ EF+ D
Sbjct: 13 DKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDD 72
Query: 688 IELILSNSVLYNGPGSQV--------TEKAEKLLE 714
+ LI N +LYN S +KAE LL+
Sbjct: 73 LNLIWKNCLLYNSDPSHPLRRHANFMKKKAEHLLK 107
Score = 50.1 bits (120), Expect = 3e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVL 1113
+ +KPMDL T+ KK ++ +Y S+ EF+ D+ LI N +LYN S L
Sbjct: 43 DIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNSDPSHPL 91
>gnl|CDD|203845 pfam08060, NOSIC, NOSIC (NUC001) domain. This is the central domain
in Nop56/SIK1-like proteins.
Length = 52
Score = 73.7 bits (182), Expect = 3e-16
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 1228 IVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGN 1279
I++A L +ID EI L H E Y+ FPEL+ LV P++Y + V+ +GN
Sbjct: 1 IIQAIELLDDIDKEINLFHMRLREWYSWHFPELEKLVPDPIDYAKVVKLIGN 52
>gnl|CDD|197999 smart00931, NOSIC, NOSIC (NUC001) domain. This is the central domain
in Nop56/SIK1-like proteins.
Length = 52
Score = 73.0 bits (180), Expect = 5e-16
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 1228 IVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGN 1279
I++A NL +ID EI L H E Y+ FPEL+ LV PL+Y + V+ LGN
Sbjct: 1 IIQAINLLDDIDKEINLFHMRVREWYSWHFPELEKLVPDPLDYAKVVKLLGN 52
>gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily. BRD1 is
a mammalian gene which encodes for a nuclear protein
assumed to be a transcriptional regulator. BRD1 has been
implicated with brain development and susceptibility to
schizophrenia and bipolar affective disorder.
Bromodomains are 110 amino acid long domains that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 98
Score = 74.4 bits (183), Expect = 7e-16
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREE 560
LE +L + D Q + + FS PV+ VPDY + +PMD T+R+ L S++Y++ E+
Sbjct: 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLED 61
Query: 561 FLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELL 597
F AD N I+ N YN +I AA R+ +L
Sbjct: 62 FEADFNLIINNCLAYNAKDTIFYRAAVRLRDQGGAIL 98
Score = 58.6 bits (142), Expect = 3e-10
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 643 IFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 700
IF +PV+ DY +++PMD T+ KK +S +Y + +F AD LI++N + YN
Sbjct: 21 IFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNA 78
Score = 43.2 bits (102), Expect = 7e-05
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 1107
+PMD T+ KK +S +Y + +F AD LI++N + YN
Sbjct: 40 QPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNA 78
>gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain. BDF1/BDF2 like subfamily,
restricted to fungi, repeat I. BDF1 and BDF2 are yeast
transcription factors involved in the expression of a
wide range of genes, including snRNAs; they are required
for sporulation and DNA repair and protect histone H4
from deacetylation. Bromodomains are 110 amino acid long
domains, that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 103
Score = 73.1 bits (180), Expect = 3e-15
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 635 LKNMADAWIFIKPVN--KKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
LK + DA F+ PV+ K Y ++++KPMDL TI +K +S+ Y S EF AD L++
Sbjct: 16 LKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMV 75
Query: 693 SNSVLYNGPGSQVTEKAEKL 712
N + +NGP V++ ++L
Sbjct: 76 DNCLTFNGPEHPVSQMGKRL 95
Score = 71.2 bits (175), Expect = 1e-14
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 521 FSFPVN-AKL-VPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGA 578
F PV+ KL +P Y I+ +PMDL TI L+S Y S EEF AD N +V+N +NG
Sbjct: 25 FLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGP 84
Query: 579 KSILTDAARRM 589
+ ++ +R+
Sbjct: 85 EHPVSQMGKRL 95
Score = 54.2 bits (131), Expect = 9e-09
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
T+ +KPMDL TI +K +S+ Y S EF AD L++ N + +NGP V
Sbjct: 41 TIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPV 88
>gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily. RACK7
(also called human protein kinase C-binding protein) was
identified as a potential tumor suppressor genes, it
shares domain architecture with BS69/ZMYND11; both have
been implicated in the regulation of cellular
proliferation. Bromodomains are 110 amino acid long
domains, that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 99
Score = 72.8 bits (179), Expect = 3e-15
Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ 556
L+ +L+ L M+ +P + F PV+ + PDY + V +PMDL T+ +N+R K Y
Sbjct: 4 LSKLLKFALERMK-----QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYG 58
Query: 557 SREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLC 593
S + FLAD I+ N+ +YNG LT AA+ ++ +C
Sbjct: 59 STDAFLADAKWILHNAIIYNGGDHKLTQAAKAIVKIC 95
Score = 67.8 bits (166), Expect = 2e-13
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 644 FIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGS 703
F+KPV+ + F DY V KPMDL T+ K + Y S FLAD + IL N+++YNG
Sbjct: 23 FLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDH 82
Query: 704 QVTEKAEKLLEEAK 717
++T+ A+ +++ +
Sbjct: 83 KLTQAAKAIVKICE 96
Score = 45.5 bits (108), Expect = 1e-05
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVL 1113
KPMDL T+ K + Y S FLAD + IL N+++YNG ++
Sbjct: 41 KPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLT 85
>gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup. The BRD7
gene encodes a nuclear protein that has been shown to
inhibit cell growth and the progression of the cell
cycle by regulating cell-cycle genes at the
transcriptional level. BRD7 has been identified as a
gene involved in nasopharyngeal carcinoma. The protein
interacts with acetylated histone H3 via its
bromodomain. Bromodomains are 110 amino acid long
domains that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 98
Score = 71.3 bits (175), Expect = 1e-14
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREE 560
L+K L ++ Q + F+FPV + P Y I+ PMD T++E +++ YQS EE
Sbjct: 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEE 61
Query: 561 FLADVNQIVENSTLYNGAKSILTDAARRMLT 591
F D + EN+ YN +I AA+++L
Sbjct: 62 FKDDFKLMCENAMKYNKPDTIYYKAAKKLLH 92
Score = 54.0 bits (130), Expect = 1e-08
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 644 FIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGS 703
F PV Y S+++ PMD T+ +K +++ Y S EF D +L+ N++ YN P +
Sbjct: 22 FAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDT 81
Query: 704 QVTEKAEKLL 713
+ A+KLL
Sbjct: 82 IYYKAAKKLL 91
Score = 42.4 bits (100), Expect = 1e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 1064 STVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGS 1110
S++ + PMD T+ +K +++ Y S EF D +L+ N++ YN P +
Sbjct: 35 SSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDT 81
>gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA
domains. Bromodomains are 110 amino acid long domains,
that are found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine. The structure(2DKW) in this alignment is an
uncharacterized protein predicted from analysis of cDNA
clones from human fetal liver.
Length = 112
Score = 71.2 bits (175), Expect = 1e-14
Identities = 31/89 (34%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 643 IFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG-- 700
F KPV+++ DYY ++++PMDL+TI +K +H+Y + +FL DI+LI++N++ YN
Sbjct: 23 AFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDR 82
Query: 701 --PGSQVTEKAEKLLEEAKLALEKYDDHL 727
+ +A +L +E +E D L
Sbjct: 83 DPADKLIRSRACELRDEVHAMIEAELDPL 111
Score = 69.3 bits (170), Expect = 6e-14
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 521 FSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAK 579
F+ PV+ + VPDYY+I+ +PMDLQTI + L + +Y + ++FL D++ IV N+ YN +
Sbjct: 24 FTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDR 82
Score = 49.7 bits (119), Expect = 4e-07
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 1107
++PMDL+TI +K +H+Y + +FL DI+LI++N++ YN
Sbjct: 41 KQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80
>gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain. BDF1/BDF2 like subfamily,
restricted to fungi, repeat II. BDF1 and BDF2 are yeast
transcription factors involved in the expression of a
wide range of genes, including snRNAs; they are required
for sporulation and DNA repair and protect histone H4
from deacetylation. Bromodomains are 110 amino acid long
domains, that are found in many chromatin associated
proteins. Bromodomains can interact specifically with
acetylated lysine.
Length = 102
Score = 70.8 bits (174), Expect = 1e-14
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 626 IFDDIVNNKLKNMADAWIFIKPVNKKFFK--DYYSVVQKPMDLETIGKKAQSHKYHSRYE 683
+ +++ K K+ A W F+ PV+ +Y+S+++KPMDL TI KK Q+ +Y S E
Sbjct: 8 VLKELM--KPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKE 65
Query: 684 FLADIELILSNSVLYNGPGSQVTEKAEKL 712
F D+ LI N +N G+ V +L
Sbjct: 66 FERDVRLIFKNCYTFNPEGTDVYMMGHQL 94
Score = 65.8 bits (161), Expect = 9e-13
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 502 EKILNEMRDMSQTEPNVKQ-FSFPVN--AKLVPDYYKIVTRPMDLQTIRENLRSKKYQSR 558
E++L E+ M F PV+ A +P+Y+ I+ +PMDL TI + L++ +YQS
Sbjct: 6 EEVLKEL--MKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSA 63
Query: 559 EEFLADVNQIVENSTLYNGAKSILTDAARRM 589
+EF DV I +N +N + + ++
Sbjct: 64 KEFERDVRLIFKNCYTFNPEGTDVYMMGHQL 94
Score = 49.6 bits (119), Expect = 5e-07
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
++ +KPMDL TI KK Q+ +Y S EF D+ LI N +N G+ V
Sbjct: 40 SIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDV 87
>gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like
subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was
identified as a novel human bromodomain gene by cDNA
library screening. The Drosophila homologue, Acf1, is
part of the CHRAC (chromatin accessibility complex) and
regulates ISWI-induced nucleosome remodeling.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 115
Score = 70.1 bits (172), Expect = 3e-14
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 621 VALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHS 680
AL + +IV +K D+W F++PV+K DYY +++KPMDL TI +K +Y
Sbjct: 15 SALEQLLVEIVKHK-----DSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKL 69
Query: 681 RYEFLADIELILSNSVLYNGPGSQV 705
EFL+DI+L+ SN LYN + V
Sbjct: 70 AEEFLSDIQLVFSNCFLYNPEHTSV 94
Score = 66.6 bits (163), Expect = 6e-13
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 488 RRRTDPVVVL-TSILEKILNE-MRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQT 545
R L S LE++L E ++ + F PV+ VPDYY I+ +PMDL T
Sbjct: 3 RSEGRHHGPLNLSALEQLLVEIVKH-----KDSWPFLRPVSKIEVPDYYDIIKKPMDLGT 57
Query: 546 IRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRML 590
I+E L +Y+ EEFL+D+ + N LYN + + A R+
Sbjct: 58 IKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVYKAGTRLQ 102
Score = 43.2 bits (102), Expect = 9e-05
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 1066 VSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ +KPMDL TI +K +Y EFL+DI+L+ SN LYN + V
Sbjct: 48 IIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSV 94
>gnl|CDD|147559 pfam05434, Tmemb_9, TMEM9. This family contains several eukaryotic
transmembrane proteins which are homologous to human
transmembrane protein 9. The TMEM9 gene encodes a 183
amino-acid protein that contains an N-terminal signal
peptide, a single transmembrane region, three potential
N-glycosylation sites and three conserved cys-rich
domains in the N-terminus, but no known functional
domains. The protein is highly conserved between species
from Caenorhabditis elegans to man and belongs to a novel
family of transmembrane proteins. The exact function of
TMEM9 is unknown although it has been found to be widely
expressed and localised to the late endosomes and
lysosomes. Members of this family contain pfam03128
repeats in their N-terminal region.
Length = 149
Score = 70.3 bits (172), Expect = 7e-14
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 1699 PSSGSGSAHPMGMRSGNVLNRVGHQQDKWKRQVLEQRRNIYDKHTML 1745
P + + + NVLNRV H Q +WKRQV EQR++++D+HTML
Sbjct: 103 PFANAHNVLDRSRARNNVLNRVEHAQQRWKRQVQEQRKSVFDRHTML 149
>gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily,
repeat I. Human Brdt is a testis-specific member of the
BET subfamily of bromodomain proteins; the first
bromodomain in Brdt has been shown to be essential for
male germ cell differentiation. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 107
Score = 65.9 bits (161), Expect = 8e-13
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 641 AWIFIKPVN--KKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLY 698
AW F +PV+ K DY+ +++ PMDL TI K+ +++ Y S E + D + +N +Y
Sbjct: 23 AWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIY 82
Query: 699 NGPGSQVTEKAEKLLEEAKLALEK 722
N PG V A+ L KL L+K
Sbjct: 83 NKPGDDVVLMAQTL---EKLFLQK 103
Score = 61.7 bits (150), Expect = 3e-11
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 27/106 (25%)
Query: 474 NQLDYLKRHQKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNA-KL-VP 531
NQL YL + VVL ++ + F PV+A KL +P
Sbjct: 4 NQLQYLLK-------------VVLKALWK------------HKFAWPFQQPVDAVKLNLP 38
Query: 532 DYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNG 577
DY+KI+ PMDL TI++ L + Y S E + D N + N +YN
Sbjct: 39 DYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84
Score = 45.9 bits (109), Expect = 1e-05
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVLI 1114
+ + PMDL TI K+ +++ Y S E + D + +N +YN PG V++
Sbjct: 42 KIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVVL 91
>gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome
transcription factor-like subfamily (WSTF-like). The
Williams-Beuren syndrome deletion transcript 9 is a
putative transcriptional regulator. WSTF was found to
play a role in vitamin D-mediated transcription as part
of two chromatin remodeling complexes, WINAC and WICH.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 97
Score = 65.3 bits (159), Expect = 1e-12
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 502 EKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEF 561
E+IL+++ + P F PV A DY K++T PMDLQT++ Y S +EF
Sbjct: 6 EEILSKILKYRFSWP----FREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEF 61
Query: 562 LADVNQIVENSTLYNGAKSILTDAARRMLTLCVELL 597
L D+ + N+ Y S + R+ CV LL
Sbjct: 62 LDDMKLVFSNAEKYYENGSYVLSCMRKTEQCCVNLL 97
Score = 64.5 bits (157), Expect = 2e-12
Identities = 28/78 (35%), Positives = 39/78 (50%)
Query: 634 KLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILS 693
K+ +W F +PV +DY V+ PMDL+T+ K Y S EFL D++L+ S
Sbjct: 11 KILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFS 70
Query: 694 NSVLYNGPGSQVTEKAEK 711
N+ Y GS V K
Sbjct: 71 NAEKYYENGSYVLSCMRK 88
Score = 47.1 bits (112), Expect = 3e-06
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 1070 PMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVL 1113
PMDL+T+ K Y S EFL D++L+ SN+ Y GS VL
Sbjct: 40 PMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVL 83
>gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like
subfamily, specific to fungi. Rsc1 and Rsc2 are
components of the RSC complex (remodeling the structure
of chromatin), are essential for transcriptional
control, and have a specific domain architecture
including two bromodomains. The RSC complex has also
been linked to homologous recombination and
nonhomologous end-joining repair of DNA double strand
breaks. Bromodomains are 110 amino acid long domains,
that are found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 104
Score = 65.0 bits (159), Expect = 1e-12
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 650 KKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKA 709
K +YY + P+ L+ I KK + KY S +FL D+ L+ N+ LYN SQ + A
Sbjct: 34 KAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDA 93
Query: 710 EKLLEEAKL 718
L +EA+L
Sbjct: 94 VLLEKEARL 102
Score = 54.2 bits (131), Expect = 1e-08
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 531 PDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576
P+YY+ ++ P+ L I++ ++ +KY+S ++FL D+N + EN+ LYN
Sbjct: 38 PEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYN 83
Score = 51.9 bits (125), Expect = 7e-08
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 1058 RNHREESTVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVLI 1114
E P+ L+ I KK + KY S +FL D+ L+ N+ LYN SQ
Sbjct: 35 AREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYK 91
>gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V.
Polybromo is a nuclear protein of unknown function,
which contains 6 bromodomains. The human ortholog BAF180
is part of a SWI/SNF chromatin-remodeling complex, and
it may carry out the functions of Yeast Rsc-1 and Rsc-2.
It was shown that polybromo bromodomains bind to histone
H3 at specific acetyl-lysine positions. Bromodomains are
found in many chromatin-associated proteins and in
nuclear histone acetyltransferases. They interact
specifically with acetylated lysine, but not all the
bromodomains in polybromo may bind to acetyl-lysine.
Length = 105
Score = 63.9 bits (156), Expect = 4e-12
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 641 AWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 700
+ IF++ +K + DYY V++KP+D+E I K + ++Y S + ++D L+ N+ YN
Sbjct: 24 SLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNE 83
Query: 701 PGSQVTEKA---EKLLEEAK 717
P SQ+ + A +K+L E K
Sbjct: 84 PDSQIYKDALTLQKVLLETK 103
Score = 53.8 bits (130), Expect = 2e-08
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 501 LEKILNEMRDMSQTEPNVKQFSFPV----NAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ 556
L ++ N +++ T+ ++ S + PDYY ++ +P+D++ IR + +YQ
Sbjct: 5 LWELYNAVKNY--TDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQ 62
Query: 557 SREEFLADVNQIVENSTLYNGAKS-ILTDAARRMLTLCVELLGKKEE 602
S ++ ++D + +N+ YN S I DA LTL LL K E
Sbjct: 63 SLDDMVSDFVLMFDNACKYNEPDSQIYKDA----LTLQKVLLETKRE 105
Score = 44.2 bits (105), Expect = 3e-05
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
V +KP+D+E I K + ++Y S + ++D L+ N+ YN P SQ+
Sbjct: 41 DVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYNEPDSQI 88
>gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily. Tif1
(transcription intermediary factor 1) is a member of the
tripartite motif (TRIM) protein family, which is
characterized by a particular domain architecture. It
functions by recruiting coactivators and/or corepressors
to modulate transcription. Vertebrate Tif1-gamma, also
labeled E3 ubiquitin-protein ligase TRIM33, plays a role
in the control of hematopoiesis. Its homologue in
Xenopus laevis, Ectodermin, has been shown to function
in germ-layer specification and control of cell growth
during embryogenesis. Bromodomains are 110 amino acid
long domains, that are found in many chromatin
associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 109
Score = 63.8 bits (156), Expect = 5e-12
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 500 ILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSK---KYQ 556
E++L E+ + P F PV + VP+YYKI+ PMDL IR+ L+ K Y
Sbjct: 8 KCERLLLELYCHELSLP----FHEPV-SPSVPNYYKIIKTPMDLSLIRKKLQPKSPQHYS 62
Query: 557 SREEFLADVNQIVENSTLYNGAKSILTDAAR 587
S EEF+ADV + +N +N S + A +
Sbjct: 63 SPEEFVADVRLMFKNCYKFNEEDSEVAQAGK 93
Score = 51.9 bits (125), Expect = 6e-08
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 654 KDYYSVVQKPMDLETIGKKAQ---SHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAE 710
+YY +++ PMDL I KK Q Y S EF+AD+ L+ N +N S+V + +
Sbjct: 34 PNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSEVAQAGK 93
Query: 711 KL 712
+L
Sbjct: 94 EL 95
Score = 43.0 bits (102), Expect = 9e-05
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 1069 KPMDLETIGKKAQ---SHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMDL I KK Q Y S EF+AD+ L+ N +N S+V
Sbjct: 42 TPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSEV 88
>gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III.
Polybromo is a nuclear protein of unknown function,
which contains 6 bromodomains. The human ortholog BAF180
is part of a SWI/SNF chromatin-remodeling complex, and
it may carry out the functions of Yeast Rsc-1 and Rsc-2.
It was shown that polybromo bromodomains bind to histone
H3 at specific acetyl-lysine positions. Bromodomains are
found in many chromatin-associated proteins and in
nuclear histone acetyltransferases. They interact
specifically with acetylated lysine, but not all the
bromodomains in polybromo may bind to acetyl-lysine.
Length = 103
Score = 63.1 bits (154), Expect = 7e-12
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 631 VNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIEL 690
NN+ + +A+ F+K +K+ + DYY ++ P+ L+ I K ++ +Y + E AD+ L
Sbjct: 16 RNNQGQLLAEP--FLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNL 73
Query: 691 ILSNSVLYNGPGSQVTEKAEKLL 713
+ N+ YN P S++ + AEKL
Sbjct: 74 MFENAKRYNVPNSRIYKDAEKLQ 96
Score = 52.0 bits (125), Expect = 6e-08
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 526 NAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDA 585
+ + PDYY+ + P+ LQ IR L++ +Y++ EE AD+N + EN+ YN S +
Sbjct: 32 SKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKD 91
Query: 586 ARRMLTL 592
A ++ L
Sbjct: 92 AEKLQKL 98
Score = 38.5 bits (90), Expect = 0.003
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
P+ L+ I K ++ +Y + E AD+ L+ N+ YN P S++
Sbjct: 45 NPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRI 88
>gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily. Cbp (CREB
binding protein or CREBBP) is an acetyltransferase
acting on histone, which gives a specific tag for
transcriptional activation and also acetylates
non-histone proteins. CREBBP binds specifically to
phosphorylated CREB protein and augments the activity of
phosphorylated CREB to activate transcription of
cAMP-responsive genes. Bromodomains are 110 amino acid
long domains, that are found in many chromatin
associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 108
Score = 63.2 bits (154), Expect = 7e-12
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKL--VPDYYKIVTRPMDLQTIRENLRSK 553
L LEK+ + + + P F PV+ KL +PDY+ IV PMDL TIR L +
Sbjct: 7 ALMPTLEKLYKQDPE---SLP----FRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTG 59
Query: 554 KYQSREEFLADVNQIVENSTLYN 576
+YQ +++ DV + +N+ LYN
Sbjct: 60 QYQDPWQYVDDVWLMFDNAWLYN 82
Score = 59.8 bits (145), Expect = 1e-10
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 635 LKNMADAWIFIKPVNKKFFK--DYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
K ++ F +PV+ K DY+ +V+ PMDL TI +K + +Y ++++ D+ L+
Sbjct: 16 YKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMF 75
Query: 693 SNSVLYNGPGSQVTEKAEKLLE 714
N+ LYN S+V + KL E
Sbjct: 76 DNAWLYNRKTSRVYKYCTKLAE 97
Score = 44.0 bits (104), Expect = 4e-05
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ PMDL TI +K + +Y ++++ D+ L+ N+ LYN S+V
Sbjct: 44 KNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSRV 88
>gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV.
Polybromo is a nuclear protein of unknown function,
which contains 6 bromodomains. The human ortholog BAF180
is part of a SWI/SNF chromatin-remodeling complex, and
it may carry out the functions of Yeast Rsc-1 and Rsc-2.
It was shown that polybromo bromodomains bind to histone
H3 at specific acetyl-lysine positions. Bromodomains are
found in many chromatin-associated proteins and in
nuclear histone acetyltransferases. They interact
specifically with acetylated lysine, but not all the
bromodomains in polybromo may bind to acetyl-lysine.
Length = 103
Score = 60.5 bits (147), Expect = 6e-11
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 643 IFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPG 702
+F++ +KK + DYY ++ +P+DL+TI ++ KY + E + D +L+ N+ YN G
Sbjct: 26 LFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEG 85
Query: 703 SQVTEKA---EKLLEEAK 717
SQV E A EK+L+E +
Sbjct: 86 SQVYEDANILEKVLKEKR 103
Score = 55.9 bits (135), Expect = 3e-09
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 500 ILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSRE 559
L + E R+ S F + K PDYYKI+ P+DL+TI N+R+ KY + E
Sbjct: 7 ALFLYVLEYREGSGRRL-CDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEE 65
Query: 560 EFLADVNQIVENSTLYN 576
E + D + N+ YN
Sbjct: 66 ELMDDFKLMFRNARHYN 82
Score = 37.8 bits (88), Expect = 0.006
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 1066 VSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ +P+DL+TI ++ KY + E + D +L+ N+ YN GSQV
Sbjct: 42 IILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYNEEGSQV 88
>gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like
subfamily. WDR9 is a human gene located in the Down
Syndrome critical region-2 of chromosome 21. It encodes
for a nuclear protein containing WD40 repeats and two
bromodomains, which may function as a transcriptional
regulator involved in chromatin remodeling and play a
role in embryonic development. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 128
Score = 59.7 bits (145), Expect = 2e-10
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 633 NKLKNMADAWIFIKPVNKKFFK-DYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELI 691
+ A F PV+ + + DY++ V PMDLETI + ++ Y S D+ LI
Sbjct: 37 LLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLI 96
Query: 692 LSNSVLYNGPGSQVTEKAEKLLEE 715
LSN+ +N P S++ +KA++L +
Sbjct: 97 LSNAETFNEPNSEIAKKAKRLSDW 120
Score = 59.7 bits (145), Expect = 3e-10
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKL-VPDYYKIVTRPMDLQTIRENLRSKKY 555
L S L+K+L ++ E F +PV+ + PDY+ V PMDL+TIR L ++ Y
Sbjct: 29 LISGLDKLLLSLQL-EIAEY----FEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYY 83
Query: 556 QSREEFLADVNQIVENSTLYNGAKSILTDAARR 588
+S E DV I+ N+ +N S + A+R
Sbjct: 84 RSLEALRHDVRLILSNAETFNEPNSEIAKKAKR 116
Score = 41.6 bits (98), Expect = 4e-04
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 1070 PMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVLINI 1116
PMDLETI + ++ Y S D+ LILSN+ +N P S++
Sbjct: 68 PMDLETIRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIAKKA 114
>gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific
to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related
matrix-associated actin-dependent regulator of chromatin
subfamily A member 2 is a global transcriptional
activator, which cooperates with nuclear hormone
receptors to boost transcriptional activation.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 107
Score = 55.9 bits (135), Expect = 2e-09
Identities = 18/57 (31%), Positives = 38/57 (66%)
Query: 528 KLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTD 584
K +P+YY+++ +P+D + I+E +R+ KY+S E+ DV + +N+ +N S++ +
Sbjct: 35 KELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYE 91
Score = 52.8 bits (127), Expect = 3e-08
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 644 FIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGS 703
FI+ ++K +YY +++KP+D + I ++ ++HKY S + D+ L+ N+ +N GS
Sbjct: 28 FIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGS 87
Query: 704 QVTEKAEKL 712
+ E + L
Sbjct: 88 LIYEDSIVL 96
Score = 37.8 bits (88), Expect = 0.006
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVLINIWWHFIEIKSSFK 1128
KP+D + I ++ ++HKY S + D+ L+ N+ +N GS + + I ++S FK
Sbjct: 46 KPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDS----IVLQSVFK 101
Query: 1129 T 1129
+
Sbjct: 102 S 102
>gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily.
WDR9 is a human gene located in the Down Syndrome
critical region-2 of chromosome 21. It encodes for a
nuclear protein containing WD40 repeats and two
bromodomains, which may function as a transcriptional
regulator involved in chromatin remodeling and play a
role in embryonic development. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 119
Score = 55.9 bits (135), Expect = 4e-09
Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 503 KILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFL 562
+++N M D +EP F PV+ PDY I+ PMDL T++E L Y EF
Sbjct: 12 ELVNLMWDCEDSEP----FRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFA 67
Query: 563 ADVNQIVENSTLYNGAK 579
DV I NS Y K
Sbjct: 68 KDVRLIFSNSKSYTPNK 84
Score = 47.5 bits (113), Expect = 4e-06
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 644 FIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYN 699
F +PV+ + DY ++ PMDL T+ + Y EF D+ LI SNS Y
Sbjct: 26 FRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81
Score = 35.9 bits (83), Expect = 0.039
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 1070 PMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYN 1106
PMDL T+ + Y EF D+ LI SNS Y
Sbjct: 45 PMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81
>gnl|CDD|99924 cd05492, Bromo_ZMYND11, Bromodomain; ZMYND11_like sub-family.
ZMYND11 or BS69 is a ubiquitously expressed nuclear
protein that has been shown to associate with chromatin.
It interacts with chromatin remodeling factors and might
play a role in chromatin remodeling and gene expression.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 109
Score = 55.5 bits (134), Expect = 5e-09
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 531 PDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRML 590
P +++ +D+ I+E + S+KY S EEF AD ++ N+ +++GA S DAAR +
Sbjct: 37 PKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLY 96
Query: 591 TLCV 594
Sbjct: 97 RDTC 100
Score = 44.7 bits (106), Expect = 3e-05
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 660 VQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLL 713
+ +D+ I +K S KY S EF AD L+L N+ +++G S+ + A L
Sbjct: 43 IHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAARWLY 96
Score = 41.2 bits (97), Expect = 4e-04
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQ 1111
+D+ I +K S KY S EF AD L+L N+ +++G S+
Sbjct: 45 THLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSE 87
>gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II.
Polybromo is a nuclear protein of unknown function,
which contains 6 bromodomains. The human ortholog BAF180
is part of a SWI/SNF chromatin-remodeling complex, and
it may carry out the functions of Yeast Rsc-1 and Rsc-2.
It was shown that polybromo bromodomains bind to histone
H3 at specific acetyl-lysine positions. Bromodomains are
found in many chromatin-associated proteins and in
nuclear histone acetyltransferases. They interact
specifically with acetylated lysine, but not all the
bromodomains in polybromo may bind to acetyl-lysine.
Length = 103
Score = 53.2 bits (128), Expect = 2e-08
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 643 IFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPG 702
+F K +K + DYY+V+++P+DL+TI ++ QS Y S + D++L++ N+ +N PG
Sbjct: 26 LFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPG 85
Query: 703 SQVTEKAEKL 712
SQV + A +
Sbjct: 86 SQVYKDANAI 95
Score = 44.0 bits (104), Expect = 4e-05
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 528 KLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYN 576
L PDYY ++ P+DL+TI + ++S Y+S E+ D++ +V+N+ +N
Sbjct: 34 VLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFN 82
Score = 38.2 bits (89), Expect = 0.004
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 1066 VSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
V ++P+DL+TI ++ QS Y S + D++L++ N+ +N PGSQV
Sbjct: 42 VIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTFNEPGSQV 88
>gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to
fungi. SNF2 is a yeast protein involved in
transcriptional activation, it is the catalytic
component of the SWI/SNF ATP-dependent chromatin
remodeling complex. The protein is essential for the
regulation of gene expression (both positive and
negative) of a large number of genes. The SWI/SNF
complex changes chromatin structure by altering
DNA-histone contacts within the nucleosome, which
results in a re-positioning of the nucleosome and
facilitates or represses the binding of gene-specific
transcription factors. Bromodomains are 110 amino acid
long domains, that are found in many chromatin
associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 103
Score = 53.1 bits (128), Expect = 3e-08
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 643 IFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPG 702
+F++ +KK + DYY ++++P+ L+ I ++ + Y S EFL D L+ +N+ YN G
Sbjct: 26 LFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEG 85
Query: 703 SQVTEKAEKLLEEAKLALEKY 723
S V E A +E K +KY
Sbjct: 86 SIVYEDA-VEME--KAFKKKY 103
Score = 46.6 bits (111), Expect = 6e-06
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 521 FSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKS 580
F + KL PDYY I+ RP+ L I+ + + Y+S EEFL D + + N+ YN S
Sbjct: 27 FLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGS 86
Query: 581 ILTDAARRM 589
I+ + A M
Sbjct: 87 IVYEDAVEM 95
Score = 32.3 bits (74), Expect = 0.49
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+P+ L+ I ++ + Y S EFL D L+ +N+ YN GS V
Sbjct: 45 RPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTYNQEGSIV 88
>gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family. ASH1
(absent, small, or homeotic 1) is a member of the
trithorax-group in Drosophila melanogaster, an
epigenetic transcriptional regulator of HOX genes.
Drosophila ASH1 has been shown to methylate specific
lysines in histones H3 and H4. Mammalian ASH1 has been
shown to methylate histone H3. Bromodomains are 110
amino acid long domains, that are found in many
chromatin associated proteins. Bromodomains can interact
specifically with acetylated lysine.
Length = 106
Score = 52.0 bits (125), Expect = 7e-08
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 528 KLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAAR 587
K PDYY+ +T P+DL TI + + + Y++ E F +D+ ++ N+ Y G KS +
Sbjct: 36 KKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVC 95
Query: 588 RM 589
R+
Sbjct: 96 RL 97
Score = 38.1 bits (89), Expect = 0.005
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 644 FIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGS 703
FI +KK DYY + P+DL TI K+ + Y + F +D+ + N+ Y G S
Sbjct: 29 FINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKYYGRKS 88
Query: 704 QVTEKAEKL 712
+ +L
Sbjct: 89 PIGRDVCRL 97
>gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup. In
mammals, brd8 (bromodomain containing 8) interacts with
the thyroid hormone receptor in a ligand-dependent
fashion and enhances thyroid hormone-dependent
activation from thyroid response elements. Brd8 is
thought to be a nuclear receptor coactivator.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 104
Score = 50.4 bits (121), Expect = 2e-07
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 641 AWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNG 700
A +F+KPV + Y+SVV +PMDL TI K ++ S EF D+ L+ N+++YN
Sbjct: 21 ASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNS 80
Query: 701 PGSQVTEKAEKLLEEAKLALEKYDDHLTQLE 731
V +A+E + ++Q++
Sbjct: 81 SDHDV----------YLMAVEMQREVMSQIQ 101
Score = 46.6 bits (111), Expect = 5e-06
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 521 FSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKS 580
F PV + P Y+ +V RPMDL TI++N+ + +S EF DV + +N+ +YN +
Sbjct: 24 FLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDH 83
Query: 581 ILTDAARRMLTLCVELL 597
+ A M + +
Sbjct: 84 DVYLMAVEMQREVMSQI 100
Score = 39.7 bits (93), Expect = 0.001
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 1064 STVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+V +PMDL TI K ++ S EF D+ L+ N+++YN V
Sbjct: 37 HSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDV 85
>gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like
subfamily, specific to fungi. Rsc1 and Rsc2 are
components of the RSC complex (remodeling the structure
of chromatin), are essential for transcriptional
control, and have a specific domain architecture
including two bromodomains. The RSC complex has also
been linked to homologous recombination and
nonhomologous end-joining repair of DNA double strand
breaks. Bromodomains are 110 amino acid long domains,
that are found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 106
Score = 48.1 bits (115), Expect = 2e-06
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 531 PDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAA 586
PDYYKI+ P+ L T+++ L Y + +EF+ D+ QI N+ LYN S++ A
Sbjct: 38 PDYYKIIKNPLSLNTVKKRL--PHYTNAQEFVNDLAQIPWNARLYNTKGSVIYKYA 91
Score = 46.2 bits (110), Expect = 7e-06
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 650 KKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKA 709
+K + DYY +++ P+ L T+ K+ Y + EF+ D+ I N+ LYN GS + + A
Sbjct: 34 RKDYPDYYKIIKNPLSLNTVKKRLP--HYTNAQEFVNDLAQIPWNARLYNTKGSVIYKYA 91
Query: 710 EKLLEEAKLALEKY 723
L LEKY
Sbjct: 92 --------LILEKY 97
Score = 33.1 bits (76), Expect = 0.29
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 1066 VSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ + P+ L T+ K+ Y + EF+ D+ I N+ LYN GS +
Sbjct: 43 IIKNPLSLNTVKKRLP--HYTNAQEFVNDLAQIPWNARLYNTKGSVI 87
>gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I.
Polybromo is a nuclear protein of unknown function,
which contains 6 bromodomains. The human ortholog BAF180
is part of a SWI/SNF chromatin-remodeling complex, and
it may carry out the functions of Yeast Rsc-1 and Rsc-2.
It was shown that polybromo bromodomains bind to histone
H3 at specific acetyl-lysine positions. Bromodomains are
found in many chromatin-associated proteins and in
nuclear histone acetyltransferases. They interact
specifically with acetylated lysine, but not all the
bromodomains in polybromo may bind to acetyl-lysine.
Length = 113
Score = 45.8 bits (109), Expect = 1e-05
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 644 FIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGS 703
FI+ ++ +YY VV P+DL I +K ++ +Y + AD EL+++N+ Y P S
Sbjct: 29 FIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDS 88
Query: 704 QVTEKAEKLLE 714
+ A KL E
Sbjct: 89 PEHKDACKLWE 99
Score = 44.6 bits (106), Expect = 3e-05
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 531 PDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRML 590
P+YY++V+ P+DL I++ L++++Y ++ AD ++ N+ Y S A ++
Sbjct: 39 PEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLW 98
Query: 591 TLCVELLGKKEELL 604
L + + E+L
Sbjct: 99 ELFLSA---RNEVL 109
Score = 35.0 bits (81), Expect = 0.072
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 1058 RNHREESTVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGS---QVLI 1114
RN E V P+DL I +K ++ +Y + AD EL+++N+ Y P S +
Sbjct: 36 RNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDAC 95
Query: 1115 NIWWHFIEIKSSFKTNN 1131
+W F+ ++ +
Sbjct: 96 KLWELFLSARNEVLSGG 112
>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily. The
SP100C protein is a splice variant of SP100, a major
component of PML-SP100 nuclear bodies (NBs), which are
poorly understood. It is covalently modified by SUMO-1
and may play a role in processes at the chromatin level.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 102
Score = 42.8 bits (101), Expect = 1e-04
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 654 KDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP------GSQVTE 707
+DY +++PM L + ++ YH+ F+ D+ LI N L+ G + +
Sbjct: 31 RDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDDDFGQVGITLEK 90
Query: 708 KAEKLLEE 715
K EK +E
Sbjct: 91 KFEKNFKE 98
Score = 36.6 bits (85), Expect = 0.014
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 528 KLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAK 579
+ DY + + PM L ++E L + Y + E F+ D+ I N L+
Sbjct: 28 YYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD 79
Score = 33.9 bits (78), Expect = 0.11
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 1061 REESTVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYN 1106
R+ ++PM L + ++ YH+ F+ D+ LI N L+
Sbjct: 31 RDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFY 76
>gnl|CDD|227506 COG5179, TAF1, Transcription initiation factor TFIID, subunit TAF1
[Transcription].
Length = 968
Score = 43.5 bits (102), Expect = 0.001
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 376 KCGACGLVGHMRTNKACPQYS 396
CG CG VGHM+TNKACP++S
Sbjct: 939 TCGNCGQVGHMKTNKACPKFS 959
>gnl|CDD|99926 cd05494, Bromodomain_1, Bromodomain; uncharacterized subfamily.
Bromodomains are found in many chromatin-associated
proteins and in nuclear histone acetyltransferases. They
interact specifically with acetylated lysine.
Length = 114
Score = 34.7 bits (80), Expect = 0.098
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 634 KLKNMADAWIFIKPVNKKF--FKDYYSVVQKPMDLETI 669
+ + DAW F++PVN DY V+++PM T
Sbjct: 14 RHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTK 51
Score = 33.6 bits (77), Expect = 0.20
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 501 LEKILNEMR---DMSQTEPNVKQFSFPVN--AKLVPDYYKIVTRPMDLQTIRENL 550
LE++L E++ P F PVN + PDY ++ RPM T N+
Sbjct: 5 LERVLRELKRHRRNEDAWP----FLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNI 55
>gnl|CDD|99923 cd05491, Bromo_TBP7_like, Bromodomain; TBP7_like subfamily, limited
to fungi. TBP7, or TAT-binding protein homolog 7, is a
yeast protein of unknown function that contains
AAA-superfamily ATP-ase domains and a bromodomain.
Bromodomains are found in many chromatin-associated
proteins and in nuclear histone acetyltransferases. They
interact specifically with acetylated lysine.
Length = 119
Score = 33.6 bits (77), Expect = 0.21
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 599 KKEELLMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYS 658
K E + + P ++N++ D + + A F
Sbjct: 17 LKFEKPPTEDAFVRPDNENNEERPYEIAKDKQGVDTILETASGKKF-------------- 62
Query: 659 VVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSV 696
MDL+TI ++ + Y + +FL DI+ I+ ++
Sbjct: 63 ---YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAK 97
Score = 32.4 bits (74), Expect = 0.59
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 541 MDLQTIRENLRSKKYQSREEFLADVNQIVENS 572
MDL TI E L + Y + ++FL D+ +IV ++
Sbjct: 65 MDLDTIEERLWNGYYATPKDFLKDIKRIVRDA 96
Score = 32.0 bits (73), Expect = 0.88
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 1071 MDLETIGKKAQSHKYHSRYEFLADIELILSNSV 1103
MDL+TI ++ + Y + +FL DI+ I+ ++
Sbjct: 65 MDLDTIEERLWNGYYATPKDFLKDIKRIVRDAK 97
>gnl|CDD|182554 PRK10565, PRK10565, putative carbohydrate kinase; Provisional.
Length = 508
Score = 34.3 bits (79), Expect = 0.59
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 1646 AGFVRVNQTRLSSWAQVLEFESSVAPHLVVVVLTP--------WDETVIVGPGIGVRE 1695
AG VRV TR + A +L + P L+V LTP W + V++GPG+G +E
Sbjct: 282 AGLVRV-LTRSENIAPLL----TARPELMVHELTPDSLEESLEWADVVVIGPGLGQQE 334
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 33.9 bits (78), Expect = 0.89
Identities = 38/209 (18%), Positives = 81/209 (38%), Gaps = 37/209 (17%)
Query: 707 EKAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQADVDSFSTWTQDDDQFQSGLDK 766
E+A + +EA LE++++ +LE +E D T + + ++
Sbjct: 230 EQARETRDEADEVLEEHEERREELET---------LEAEIEDLRETIAETER------ER 274
Query: 767 EDF-----EYTDAEGNIKKENDGGLLEKDLEFSSEE---ERDDTISSNQAWTKKILNIRM 818
E+ + + +++E D L E L+ + E R + + + +
Sbjct: 275 EELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRD--RLEE 332
Query: 819 LRFQSGLDKEDFE-YTDA-----EGNIKKENDGGLLEKDLEFSSEEERDD-----NDMEE 867
R + E+ E + E + + LE +LE + E +D ++EE
Sbjct: 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELE-EAREAVEDRREEIEELEE 391
Query: 868 VVDDDSQQAAEAMVQLGNITYYTDPNTEE 896
+++ ++ +A V LGN + + EE
Sbjct: 392 EIEELRERFGDAPVDLGNAEDFLEELREE 420
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 32.3 bits (74), Expect = 1.1
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 707 EKAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQAD 746
+AE+L EEA+ L +Y+ L + + S++ +A ++A+
Sbjct: 47 AEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAE 86
>gnl|CDD|146306 pfam03598, CdhC, CO dehydrogenase/acetyl-CoA synthase complex beta
subunit.
Length = 412
Score = 32.6 bits (75), Expect = 1.7
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 42/116 (36%)
Query: 640 DAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYN 699
WI I +K F K LE IGK A K+ EF I+ +
Sbjct: 109 IIWIRI---SKDAFA-------KGFRLEHIGK-ALHAKFKQ--EFGPIIDKV-------- 147
Query: 700 GPGSQVT-----EKAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQADVDSF 750
QVT EK +++LE+A+ E D+ R R + DVD+F
Sbjct: 148 ----QVTIYTDEEKVKEILEKAREIYEARDE------------RLRGLTDEDVDTF 187
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell cycle
progression and biogenesis of 60S ribosomal subunits.
The Schistosoma mansoni Mak16 has been shown to target
protein transport to the nucleolus.
Length = 97
Score = 30.2 bits (68), Expect = 2.5
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 811 KKILNIRMLRFQSGLDKEDFEYTDAEGNIKKENDGGLLEKDLEFSSEEERDDNDME 866
+ NI F+ L+ E+ E D E ++E + + + E E + D+E
Sbjct: 41 DEPYNISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 31.9 bits (73), Expect = 3.6
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 1446 YPADMRRKAARL--VAAKCALAARVDAAH 1472
YP D+ R AAR+ V A+A R+DA H
Sbjct: 448 YPTDIERAAARVEGVRPGNAVAVRLDAGH 476
>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 31.9 bits (73), Expect = 3.7
Identities = 24/83 (28%), Positives = 27/83 (32%), Gaps = 26/83 (31%)
Query: 1428 VQDYPAD-MRRKAARLVQDY-----------PAD------MRRKAA------RLVAAKCA 1463
V DY D MR RL DY + +RR V AK
Sbjct: 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYV 202
Query: 1464 LAARVDAAHDSVDGAIGRSFRED 1486
+ D A V AIGR R D
Sbjct: 203 VGC--DGARSRVRKAIGRELRGD 223
>gnl|CDD|236636 PRK09950, PRK09950, putative transporter; Provisional.
Length = 506
Score = 31.7 bits (72), Expect = 3.8
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 1354 LSAIVGA----STAAKMMGVAGGLSRLSKMPGVAGGLSRLSKM 1392
LSA+ G + A ++ ++G + LS G+ GL RLSKM
Sbjct: 216 LSALTGLPNNFTVQAFVILLSGVIFCLSSYIGIDNGLQRLSKM 258
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 31.6 bits (72), Expect = 4.3
Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 31/220 (14%)
Query: 704 QVTEKAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQADVDSFSTWTQDD-DQFQS 762
++ EKAE + + L QL+ + + + D DS W D+ S
Sbjct: 333 ELLEKAEAYFSSTASSPGEEILDLLQLDLEELRDEEQDLPPEDDDS---WLNISPDELDS 389
Query: 763 GLDKEDFEYTDAEGNIKKENDGGLLE-----------KDLEFSSEEERDDTISSNQA-WT 810
L + + D + N + N+ LE K F E DD +
Sbjct: 390 ELQERQGDKKDLKSNKEDANEVDDLEEVVSSMEEFLNKVSSFEGAEFADDEDEDDDEPDD 449
Query: 811 KKILNIRMLRFQSGLDKEDFEYTDAEGNIKKENDGGLLEKDLEFSSEEERDDNDMEEVVD 870
+ ++ D+++F +N GL + +++ ++ DD D ++ D
Sbjct: 450 SEDKDV-------SFDEDEFFE-------FLKNMLGLKDDEIDNDLPDDSDDADEDDDED 495
Query: 871 DDSQQAAEAMVQLGNITYYTDPNTEE-TSMDVDPNYDPSE 909
DD + + + L + Y D E D N D S
Sbjct: 496 DDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNADISN 535
>gnl|CDD|185547 PTZ00304, PTZ00304, NADH dehydrogenase [ubiquinone] flavoprotein 1;
Provisional.
Length = 461
Score = 31.7 bits (72), Expect = 4.3
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 59 CALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKP 106
CAL DAA V G I R FR +IE+++++ E P P
Sbjct: 413 CALG---DAAAWPVQGLI-RHFRPEIEERIERYWEANPHWGKSGSPWR 456
Score = 31.7 bits (72), Expect = 4.3
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 1462 CALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKP 1509
CAL DAA V G I R FR +IE+++++ E P P
Sbjct: 413 CALG---DAAAWPVQGLI-RHFRPEIEERIERYWEANPHWGKSGSPWR 456
>gnl|CDD|143653 cd07912, Tweety_N, N-terminal domain of the protein encoded by the
Drosophila tweety gene and related proteins, a family of
chloride ion channels. The protein product of the
Drosophila tweety (tty) gene is thought to form a
trans-membrane protein with five membrane-spanning
regions and a cytoplasmic C-terminus. This N-terminal
domain contains the putative transmembrane spanning
regions. Tweety has been suggested as a candidate for a
large conductance chloride channel, both in vertebrate
and insect cells. Three human homologs have been
identified and designated TTYH1-3. TTYH2 has been
associated with the progression of cancer, and
Drosophila melanogaster tweety has been assumed to play
a role in development. TTYH2, and TTYH3 bind to and are
ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase,
which most likely plays a role in controlling the
cellular levels of tweety family proteins.
Length = 418
Score = 31.5 bits (72), Expect = 4.6
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 23/112 (20%)
Query: 251 CVYPQGRDLFMTSNTPNTIRQDKTLNKLKIKFLKPCEEKPNANSPFSSNQMDPNALNITI 310
CV P D ++ + TP+ + D L ++ CE P+ +PF
Sbjct: 270 CVDP---DDYVRNQTPSGLSSD-IL-----QYYLTCE--PSTTNPF------------QQ 306
Query: 311 ILAEFSRSIEHSVTLMIRLLRQEILPAPDSPPRSSTPSNMFHSKHRSDSSLT 362
L E R++ + + + LLR+ + P + + +S + LT
Sbjct: 307 RLTESQRALTNMQSQVQGLLREAVFEFPTAEDNLLSLQGDLNSTEINLHQLT 358
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 30.9 bits (70), Expect = 5.5
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 707 EKAEKLLEEAKLALEK-YDDHLTQLEKTISQVRARAMEQ--ADVDSFST 752
+K E+L+E+A+ ++ Y+++ + EKT +Q R A EQ A+ D FS+
Sbjct: 134 KKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEA-EQFLAERDDFSS 181
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 31.4 bits (72), Expect = 5.9
Identities = 14/52 (26%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 29 METEPDDVKPDVHKIIEQ--DIKGVRC-----RLAAKCALAARVDAAHDSVD 73
+E PD V P V II RLA L +A +D
Sbjct: 320 LEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLA---ELRRAAEAVLAGID 368
>gnl|CDD|223303 COG0225, MsrA, Peptide methionine sulfoxide reductase
[Posttranslational modification, protein turnover,
chaperones].
Length = 174
Score = 30.3 bits (69), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 1191 NSEQLQNVMTSIEKYQKSNQSQAPIVGPVE 1220
N EQ SIE+ Q S + PIV +E
Sbjct: 106 NEEQKAIAEASIEELQASGYFKKPIVTEIE 135
>gnl|CDD|144512 pfam00935, Ribosomal_L44, Ribosomal protein L44.
Length = 77
Score = 28.3 bits (64), Expect = 6.6
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 363 PKRKYKS--KPDLKVKCGACGLVGHMRTNKACPQYSLTG 399
P +K K K L+++C C H R K C ++ L
Sbjct: 40 PGKKAKPTKKIVLRLRCTECKKA-HQRPGKRCKKFELVE 77
>gnl|CDD|117583 pfam09017, Transglut_prok, Microbial transglutaminase. Microbial
transglutaminase (MTG) catalyzes an acyl transfer
reaction by means of a Cys-Asp diad mechanism, in which
the gamma-carboxyamide groups of peptide-bound glutamine
residues act as the acyl donors. The MTG molecule forms
a single, compact domain belonging to the alpha+beta
folding class, containing 11 alpha-helices and 8
beta-strands. The alpha-helices and the beta-strands are
concentrated mainly at the amino and carboxyl ends of
the polypeptide, respectively. These secondary
structures are arranged so that a beta-sheet is
surrounded by alpha-helices, which are clustered into
three regions.
Length = 414
Score = 30.8 bits (69), Expect = 6.6
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 53/258 (20%)
Query: 25 AADGMETEPDDVKPDVHKIIEQDIKGVRCRLAAKCALAARVDAAHD--SVDGAIGRSFRE 82
AA + E + H++ D+K + AL R A + + SFR
Sbjct: 29 AASSGDGEEKGSYAETHRLTADDVKNIN-------ALNERALTAGQPGNSPAELSPSFRA 81
Query: 83 DIEKKLDKLTEPPPVKFVKPLPKPIEA--GRKKR-GGKRVRKMKERYAMTELRKQQ---- 135
+ D++T PP + + +P A GR +RK ++ Y+ + RKQQ
Sbjct: 82 P-DSVDDRVT--PPAEPLDRMPDAYRAYGGRATTVVNNYIRKWQQVYSHRDGRKQQMTEE 138
Query: 136 ----------------------NRLSFADIEDDAYQEDLGYSRGTIGKTGA---GRIRTP 170
NRL+FA +++ Y+ DL R G+T A GRI
Sbjct: 139 QREWLSYGCVGVTWVNSGPYPTNRLAFAFFDENKYKNDLKNGRPRPGETRAEFEGRIAKD 198
Query: 171 QVDE----KTKVRISKTLQKNLQRQQVWGGS-TTVKKQVSGTTSSI----AFTPLQLTLR 221
DE K ++ + K L+ G +K +++ ++ + +P LR
Sbjct: 199 SFDEGKGFKRAREVASVMNKALENAHDEGTYIDNLKTELANGNDALLNEDSRSPFYSALR 258
Query: 222 RQKSRPEKLGPNTSPTPL 239
S E+ G N P+ +
Sbjct: 259 NTPSFKERDGGNYDPSKM 276
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 31.2 bits (70), Expect = 6.7
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 20/98 (20%)
Query: 783 DGGLLEKDLEFSSEEERDDTISSNQAWTKKILNIRMLRFQSGLDKEDFEYTDAEGNIKKE 842
DG L++ E D + N + E+ E +AE K++
Sbjct: 67 DGDLIQGIQELKDPSL--DGSTLNSS-----------------SGEESELEEAESVFKEK 107
Query: 843 NDGGLLEKDLEFSSEEERDDNDMEEVVDDDSQQAAEAM 880
++E S + +ND EE DD + +AEA
Sbjct: 108 QMLSADVSEIEEQSNDSLSEND-EEPSMDDEKTSAEAA 144
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 31.1 bits (70), Expect = 7.0
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 1/122 (0%)
Query: 835 AEGNIKKENDGGLLEKDLEFSSEEERDDNDMEEVVDDDSQQAAEAMVQLGNITYYTDPNT 894
AE N+ LE+ + D D E + +S + + +D
Sbjct: 3824 AEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEE 3883
Query: 895 EETSMDVDPNYDPSEFLLNRTEQPMVNKPSSGVMGNDGFILNPQQAMSSHDSEIKTEDDD 954
E +D + N D E L N + + ++P+ + N Q A ++ + EDD+
Sbjct: 3884 ENQDLDEEVN-DIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDN 3942
Query: 955 LA 956
A
Sbjct: 3943 KA 3944
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.372
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 88,225,540
Number of extensions: 8870160
Number of successful extensions: 7084
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7021
Number of HSP's successfully gapped: 177
Length of query: 1746
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1635
Effective length of database: 6,014,308
Effective search space: 9833393580
Effective search space used: 9833393580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (29.1 bits)