RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11166
(1746 letters)
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein
complex, bromodomain, transcription, transcr regulation,
chromatin regulator, transcription-C complex; 3.30A
{Homo sapiens}
Length = 292
Score = 277 bits (710), Expect = 2e-84
Identities = 162/295 (54%), Positives = 201/295 (68%), Gaps = 5/295 (1%)
Query: 451 SLLLKVPKEALHAKKKRKANNPDNQLDYLKRHQKPANRRRTDPVVVLTSILEKILNEMRD 510
++LK PK+ L KKKR+ DYL R K +RRRTDP+V L+SILE I+N+MRD
Sbjct: 3 HMVLKFPKQQLPPKKKRRVGTT-VHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRD 61
Query: 511 MSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVE 570
+ T P F PVNAK+V DYYKI+TRPMDLQT+REN+R + Y SREEF + IV+
Sbjct: 62 LPNTYP----FHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVK 117
Query: 571 NSTLYNGAKSILTDAARRMLTLCVELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDI 630
NS YNG K LT ++ ML LC E L +KE+ L RLEKAINPLLDD+DQVA SFI D+I
Sbjct: 118 NSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNI 177
Query: 631 VNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIEL 690
V K+ + D+W F PVNKKF DYY V+ PMDLETI K HKY SR FL D+ L
Sbjct: 178 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 237
Query: 691 ILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQA 745
IL+NSV YNGP SQ T+ A++++ L +YD+HLTQLEK I + A+E+A
Sbjct: 238 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAALEEA 292
Score = 67.7 bits (165), Expect = 5e-12
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMDLETI K HKY SR FL D+ LIL+NSV YNGP SQ
Sbjct: 208 VNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQY 252
Score = 58.5 bits (141), Expect = 6e-09
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV--LINIWWHFIE 1122
+ +PMDL+T+ + + Y SR EF +ELI+ NS YNGP + + +
Sbjct: 82 KIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCD 141
Query: 1123 IKSSFKTNN 1131
K K +
Sbjct: 142 EKLKEKEDK 150
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem
bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS
factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Length = 265
Score = 258 bits (660), Expect = 4e-78
Identities = 149/266 (56%), Positives = 187/266 (70%), Gaps = 4/266 (1%)
Query: 484 KPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDL 543
+RRRTDP+V L+SILE I+N+MRD+ T P F PVNAK+V DYYKI+TRPMDL
Sbjct: 2 MSIHRRRTDPMVTLSSILESIINDMRDLPNTYP----FHTPVNAKVVKDYYKIITRPMDL 57
Query: 544 QTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEEL 603
QT+REN+R + Y SREEF + IV+NS YNG K LT ++ ML LC E L +KE+
Sbjct: 58 QTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDK 117
Query: 604 LMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKP 663
L RLEKAINPLLDD+DQVA SFI D+IV K+ + D+W F PVNKKF DYY V+ P
Sbjct: 118 LARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNP 177
Query: 664 MDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKY 723
MDLETI K HKY SR FL D+ LIL+NSV YNGP SQ T+ A++++ L +Y
Sbjct: 178 MDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 237
Query: 724 DDHLTQLEKTISQVRARAMEQADVDS 749
D+HLTQLEK I + A+E+A+++S
Sbjct: 238 DEHLTQLEKDICTAKEAALEEAELES 263
Score = 68.4 bits (167), Expect = 2e-12
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMDLETI K HKY SR FL D+ LIL+NSV YNGP SQ
Sbjct: 175 VNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQY 219
Score = 58.8 bits (142), Expect = 4e-09
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ +PMDL+T+ + + Y SR EF +ELI+ NS YNGP +
Sbjct: 49 KIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSL 96
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex,
ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6
DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP:
a.183.1.1 PDB: 3siu_B 3siv_B
Length = 260
Score = 257 bits (658), Expect = 6e-78
Identities = 171/282 (60%), Positives = 214/282 (75%), Gaps = 28/282 (9%)
Query: 1215 IVGPVESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTV 1274
++GPVE+ PEY++IV+ANNL VEI+ E+ +IH+F +KY+KRFPEL++LV + L+Y+RTV
Sbjct: 7 VMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTV 66
Query: 1275 RELGNDLDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQ 1334
+ELGN LD+ KNNE LQQ+LT ATIMVVSVTASTTQGQ LSEEEL + +ACDMA ELN
Sbjct: 67 KELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNA 126
Query: 1335 FKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPA 1394
K I+EYVESRM++IAPNLS I+GASTAAK+M GVAGGL+ LSKMPA
Sbjct: 127 SKHRIYEYVESRMSFIAPNLSIIIGASTAAKIM-------------GVAGGLTNLSKMPA 173
Query: 1395 CNILLQGAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKA 1454
CNI+L GAQ+K LSGFS TSVLPHTG++Y+S +VQ P D+RRKA
Sbjct: 174 CNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSD---------------IVQSLPPDLRRKA 218
Query: 1455 ARLVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTE 1496
ARLVAAKC LAARVD+ H+S +G +G +++IE+K DK E
Sbjct: 219 ARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE 260
Score = 54.3 bits (130), Expect = 9e-08
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 41 HKIIEQDIKGVRCR----LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTE 93
I++ +R + +AAKC LAARVD+ H+S +G +G +++IE+K DK E
Sbjct: 204 SDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE 260
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation,
coiled-coil, RNA binding PR; 3.10A {Sulfolobus
solfataricus}
Length = 255
Score = 224 bits (571), Expect = 3e-66
Identities = 73/281 (25%), Positives = 117/281 (41%), Gaps = 32/281 (11%)
Query: 1226 QLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGNDLDQTK 1285
L ++A +ID I L E Y+ FPELD L+ EY V G+ T
Sbjct: 5 LLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLT- 63
Query: 1286 NNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSIFEYVES 1345
+ + + I + A + G +SE++LS + + +L + ++ Y+E
Sbjct: 64 IDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEG 123
Query: 1346 RMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQKK 1405
M +APN++A+VG + A+++ +AG L L+KMPA I + GA+K
Sbjct: 124 VMKEVAPNVTALVGPALGARLL-------------SIAGSLDELAKMPASTIQVLGAEKA 170
Query: 1406 LLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALA 1465
L P G ++ + P R K AR +AAK A+A
Sbjct: 171 LFRALRSGGRPPKHGIIFQY---------------PAIHTSPRWQRGKIARALAAKLAIA 215
Query: 1466 ARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPL 1506
ARVDA IG E ++K++D++ E
Sbjct: 216 ARVDAFS---GRFIGDQLNEQLKKRIDEIKEKFAQHHHHHH 253
Score = 53.9 bits (129), Expect = 1e-07
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 38 PDVHKIIEQDIKGVRCR-LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPP 96
P +H + +G R LAAK A+AARVDA IG E ++K++D++ E
Sbjct: 191 PAIHTS-PRWQRGKIARALAAKLAIAARVDAFSG---RFIGDQLNEQLKKRIDEIKEKFA 246
Query: 97 VKFVKPL 103
Sbjct: 247 QHHHHHH 253
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB:
3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Length = 376
Score = 222 bits (566), Expect = 4e-64
Identities = 71/307 (23%), Positives = 132/307 (42%), Gaps = 32/307 (10%)
Query: 1188 KLRNSEQLQNVMTSIEKYQKSNQSQAPIVGPVESDPEYQLIVEANNLAVEIDTEIGLIHR 1247
+LR++ + E+Y K + + +S +++++A ++D I L+
Sbjct: 101 RLRSNPEEFLGENWFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVA 160
Query: 1248 FAVEKYNKRFPELDTLVVSPLEYLRTVRELGNDLDQTKNNETLQQVLTQATIMVVSVTAS 1307
E Y+ FPELD L+ +Y+ V+ +G+ + + L++ I +
Sbjct: 161 RLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNIN-EEVLRELGLSEEKIKKILEAKE 219
Query: 1308 TTQGQLLSEEELSEVYQACDMAFELNQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMM 1367
T G + + ++ V Q + L Q + + +Y++ M +APNL A+VGA AA+++
Sbjct: 220 KTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLI 279
Query: 1368 GVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQKKLLSGFSQTSVLPHTGFVYYSSL 1427
+AGGL L+ MP+ I + GA+K L + P G +Y
Sbjct: 280 -------------SLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYP- 325
Query: 1428 VQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGAIGRSFREDI 1487
+ P R K AR +A K A+AARVD I ++++
Sbjct: 326 --------------AINRSPWWQRGKIARALAGKLAIAARVDYFS---GEYIAEELKKEL 368
Query: 1488 EKKLDKL 1494
E ++ ++
Sbjct: 369 EARIREI 375
Score = 51.3 bits (122), Expect = 2e-06
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 8 LADMEDEEEDNEGGEEMAADGMETEPDDVKPDV---HKIIEQDIKGVRCR----LAAKCA 60
LA M G E+ + T K V + I + R + LA K A
Sbjct: 288 LAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLA 347
Query: 61 LAARVDAAHDSVDGAIGRSFREDIEKKLDKL 91
+AARVD I ++++E ++ ++
Sbjct: 348 IAARVDYFS---GEYIAEELKKELEARIREI 375
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET:
SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Length = 388
Score = 219 bits (559), Expect = 6e-63
Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 32/287 (11%)
Query: 1220 ESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGN 1279
+ L ++A +ID I L E Y+ FPELD L+ EY V G+
Sbjct: 132 AAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGD 191
Query: 1280 DLDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSI 1339
T ++ + + I + A + G +SE++LS + + +L + ++
Sbjct: 192 RGFLTIDSLK-ELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNL 250
Query: 1340 FEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILL 1399
Y+E M +APN++A+VG + A+++ +AG L L+KMPA I +
Sbjct: 251 NNYLEGVMKEVAPNVTALVGPALGARLL-------------SIAGSLDELAKMPASTIQV 297
Query: 1400 QGAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVA 1459
GA+K L P G ++ + P R K AR +A
Sbjct: 298 LGAEKALFRALRSGGRPPKHGIIFQY---------------PAIHTSPRWQRGKIARALA 342
Query: 1460 AKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPL 1506
AK A+AARVDA IG E ++K++D++ E
Sbjct: 343 AKLAIAARVDAFS---GRFIGDQLNEQLKKRIDEIKEKFAQHHHHHH 386
Score = 57.5 bits (138), Expect = 2e-08
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 55 LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPL 103
LAAK A+AARVDA IG E ++K++D++ E
Sbjct: 341 LAAKLAIAARVDAFSG---RFIGDQLNEQLKKRIDEIKEKFAQHHHHHH 386
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain,
chromatin, remodeler, RSC, acetylation, transcription,
chromatin regulator, nucleus, phosphorylation; HET: ALY;
1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Length = 311
Score = 193 bits (491), Expect = 9e-55
Identities = 46/238 (19%), Positives = 101/238 (42%), Gaps = 18/238 (7%)
Query: 496 VLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKY 555
++ L+ ++++ +D+ + F + K P YY + +PM + I+ +
Sbjct: 32 FISFTLDVLIDKYKDIF--KD----FIKLPSRKFHPQYYYKIQQPMSINEIKSRDY-EYE 84
Query: 556 QSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELL----------M 605
FL DV + +N YN S++ + +++ L + K + L
Sbjct: 85 DGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKA 144
Query: 606 RLEKAINPLLDDNDQVALSFIFDDIVN-NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPM 664
+L +N L+D ++ + N + + F++ V+K +YY +V PM
Sbjct: 145 KLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPM 204
Query: 665 DLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEK 722
L + + + +Y Y+F+ D+ L+ N+ ++N P + + + A L ++K
Sbjct: 205 ALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 262
Score = 95.1 bits (236), Expect = 4e-21
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREE 560
N + +EP F V+ +P+YY+IV PM L +++NL +Y +
Sbjct: 168 ASSPKNLDDKVKLSEP----FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYD 223
Query: 561 FLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKK 600
F+ D+ + +N+ ++N +++ A + L+ K+
Sbjct: 224 FIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 263
Score = 93.2 bits (231), Expect = 2e-20
Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 2/144 (1%)
Query: 626 IFDDIVNNKLKNMAD-AWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEF 684
++ + D FIK ++KF YY +Q+PM + I + F
Sbjct: 32 FISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSR-DYEYEDGPSNF 90
Query: 685 LADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQ 744
L D+EL+ N YN S + + + +++ + + K +
Sbjct: 91 LLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYL 150
Query: 745 ADVDSFSTWTQDDDQFQSGLDKED 768
+ + + + K
Sbjct: 151 NKLVDATEKKINQALLGASSPKNL 174
Score = 67.4 bits (164), Expect = 7e-12
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PM L + + + +Y Y+F+ D+ L+ N+ ++N P + +
Sbjct: 201 HSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALI 245
Score = 53.9 bits (129), Expect = 2e-07
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
Q+PM + I + FL D+EL+ N YN S +
Sbjct: 68 QQPMSINEIKSR-DYEYEDGPSNFLLDVELLTKNCQAYNEYDSLI 111
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker,
histone H3; bromodomain, remodeler, acetylation,
transcription; HET: ALY; 2.20A {Saccharomyces
cerevisiae} PDB: 2r0v_A*
Length = 361
Score = 194 bits (493), Expect = 2e-54
Identities = 51/276 (18%), Positives = 107/276 (38%), Gaps = 23/276 (8%)
Query: 463 AKKKRKANNPDNQLDYLKRHQKPANRRRTDPVV-----VLTSILEKILNEMRDMSQTEPN 517
K K +DY + D + ++ L+ ++++ +D+
Sbjct: 44 PGKHPKNQEKTPHVDYNAPLNPKSELFLDDWHIPKFNRFISFTLDVLIDKYKDIF----- 98
Query: 518 VKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNG 577
K F + K P YY + +PM + I+ + FL DV + +N YN
Sbjct: 99 -KDFIKLPSRKFHPQYYYKIQQPMSINEIKSR-DYEYEDGPSNFLLDVELLTKNCQAYNE 156
Query: 578 AKSILTDAARRMLTLCV----------ELLGKKEELLMRLEKAINPLLDDNDQVALSFIF 627
S++ + +++ L E+ +L +N L+D ++ +
Sbjct: 157 YDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQALL 216
Query: 628 DDIVN-NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLA 686
N + + F++ V+K +YY +V PM L + + + +Y Y+F+
Sbjct: 217 GASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFII 276
Query: 687 DIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEK 722
D+ L+ N+ ++N P + + + A L ++K
Sbjct: 277 DMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 312
Score = 93.0 bits (230), Expect = 5e-20
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREE 560
N + +EP F V+ +P+YY+IV PM L +++NL +Y +
Sbjct: 218 ASSPKNLDDKVKLSEP----FMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYD 273
Query: 561 FLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKK 600
F+ D+ + +N+ ++N +++ A + L+ K+
Sbjct: 274 FIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 313
Score = 66.4 bits (161), Expect = 3e-11
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PM L + + + +Y Y+F+ D+ L+ N+ ++N P + +
Sbjct: 251 HSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALI 295
Score = 50.6 bits (120), Expect = 3e-06
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
Q+PM + I + FL D+EL+ N YN S +
Sbjct: 118 QQPMSINEIKSR-DYEYEDGPSNFLLDVELLTKNCQAYNEYDSLI 161
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 172 bits (437), Expect = 2e-49
Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 39/203 (19%)
Query: 1322 VYQACDMAFELNQFKTSIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPG 1381
+ + ++ + +Y++ M +APNL A+VGA A+++
Sbjct: 5 IQEQSGARDKMVIGAGGLEDYIDKAMDDVAPNLKALVGAKLGARLI-------------S 51
Query: 1382 VAGGLSRLSKMPACNILLQGAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAAR 1441
+AGGL L+ +P+ I + GA+K L + P G +Y
Sbjct: 52 LAGGLKELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYP--------------- 96
Query: 1442 LVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVK 1501
+ P R K AR +A K A+AARVD I ++++E ++ ++ E P
Sbjct: 97 AINRSPWWQRGKIARALAGKLAIAARVDYFS---GEYIAEELKKELEARIKEIKEKYP-- 151
Query: 1502 FVKPLPKPIEAGRKKRGGKRVRK 1524
+P + +++R G++ K
Sbjct: 152 --RPPKRR----KEERKGRKPWK 168
Score = 66.1 bits (161), Expect = 2e-12
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 8 LADMEDEEEDNEGGEEMAADGMETEPDDVKPDV---HKIIEQDIKGVRCR----LAAKCA 60
LA + G E+ + T K V + I + R + LA K A
Sbjct: 59 LAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLA 118
Query: 61 LAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKPIEAGRKKRGGKRVR 120
+AARVD I ++++E ++ ++ E P +P + +++R G++
Sbjct: 119 IAARVDYFS---GEYIAEELKKELEARIKEIKEKYP----RPPKRR----KEERKGRKPW 167
Query: 121 K 121
K
Sbjct: 168 K 168
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1
(TAF1); structural genomics consortium, SGC; 1.89A {Homo
sapiens} PDB: 3hmh_A
Length = 158
Score = 157 bits (398), Expect = 3e-44
Identities = 70/134 (52%), Positives = 91/134 (67%)
Query: 617 DNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSH 676
D+DQVA SFI D+IV K+ + D+W F PVNKKF DYY V+ PMDLETI K H
Sbjct: 24 DDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKH 83
Query: 677 KYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTISQ 736
KY SR FL D+ LIL+NSV YNGP SQ T+ A++++ L +YD+HLTQLEK I
Sbjct: 84 KYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICT 143
Query: 737 VRARAMEQADVDSF 750
+ A+E+A+++S
Sbjct: 144 AKEAALEEAELESL 157
Score = 123 bits (309), Expect = 2e-32
Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Query: 483 QKPANRRRTDPVVVLTSILEK-ILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPM 541
+ + D V + IL+ + +M + + P F PVN K VPDYYK++ PM
Sbjct: 16 ENLYFQSMDDDQVAFSFILDNIVTQKMMAVPDSWP----FHHPVNKKFVPDYYKVIVNPM 71
Query: 542 DLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKE 601
DL+TIR+N+ KYQSRE FL DVN I+ NS YNG +S T A+ ++ +C + L + +
Sbjct: 72 DLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131
Query: 602 ELLMRLEKAI 611
E L +LEK I
Sbjct: 132 EHLTQLEKDI 141
Score = 67.6 bits (165), Expect = 5e-13
Identities = 28/44 (63%), Positives = 30/44 (68%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMDLETI K HKY SR FL D+ LIL+NSV YNGP SQ
Sbjct: 69 NPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQY 112
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding
protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP:
a.183.1.1
Length = 258
Score = 160 bits (405), Expect = 6e-44
Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 46/267 (17%)
Query: 1244 LIHRFAVEKYNKRFPELDT---LVVSPLEYLRTVRELGNDLDQTKNNETLQQVLTQATIM 1300
F + P + +Y R +R+ + + + L++ +
Sbjct: 21 FEESFLKAENPSPLPFNVSEVGAKALGKDYYRILRKTALAVSEKMVEKELRREDRYV-VA 79
Query: 1301 VVSVTASTTQGQLLSEEELSEVY---------QACDMAFELNQFKTSIFEYVESRMTYIA 1351
+V + + E+L ++ + EL + + + +E M IA
Sbjct: 80 LVKALEEIDESINMLNEKLEDIRAVKESEITEKFEKKIRELRELRRDVEREIEEVMEKIA 139
Query: 1352 PNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQKKLLSGFS 1411
PN++ +VGA AAK++ AG + RL ++PA I + GA+K L F+
Sbjct: 140 PNMTELVGAKVAAKLL-------------ERAGSMERLVRLPASKIQVIGAEKSLYKAFA 186
Query: 1412 QT-----SVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALAA 1466
+ + +P G ++ ++ P R K AR +AAK A+AA
Sbjct: 187 RMKKGKKAKIPKHGIIFLHP---------------FIRTLPKAKRGKMARFLAAKLAIAA 231
Query: 1467 RVDAAHDSVDGAIGRSFREDIEKKLDK 1493
++D +D ++ S R E+ K
Sbjct: 232 KIDYFRGEIDESLYESIRRRYEELRRK 258
Score = 43.3 bits (101), Expect = 4e-04
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 55 LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDK 90
LAAK A+AA++D +D ++ S R E+ K
Sbjct: 223 LAAKLAIAAKIDYFRGEIDESLYESIRRRYEELRRK 258
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics
consortium, SGC, CECR2, CAT eye syndrome chromosome
region candidate 2, bromodomain; 1.83A {Homo sapiens}
Length = 116
Score = 127 bits (321), Expect = 2e-34
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 605 MRLEKAINPLLD-DNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKP 663
MR EK L + D+D A+ + + +K D+W F++PV++ + +YY +++ P
Sbjct: 2 MREEKKTKDLFELDDDFTAMYKVL-----DVVKAHKDSWPFLEPVDESYAPNYYQIIKAP 56
Query: 664 MDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKY 723
MD+ ++ KK Y ++ EF+ D++ + N YNG S+ T+ ++ L A+ K+
Sbjct: 57 MDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMKH 116
Score = 108 bits (271), Expect = 1e-27
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREE 560
+ K+L+ ++ + P F PV+ P+YY+I+ PMD+ ++ + L Y ++EE
Sbjct: 21 MYKVLDVVKAHKDSWP----FLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEE 76
Query: 561 FLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGK 599
F+ D+ + N YNG S T + + + K
Sbjct: 77 FVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115
Score = 67.7 bits (166), Expect = 2e-13
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMD+ ++ KK Y ++ EF+ D++ + N YNG S+
Sbjct: 55 APMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEY 98
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9
isoform 1, LAVS3040, rhabdomyosarcoma antigen
MU-RMS-40.8; 2.23A {Homo sapiens}
Length = 123
Score = 127 bits (320), Expect = 3e-34
Identities = 30/129 (23%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 484 KPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDL 543
K + + P + +LE L +++ F+FPV + P Y I+ PMD
Sbjct: 4 KLSAENESTP---IQQLLEHFLRQLQRKDPHGF----FAFPVTDAIAPGYSMIIKHPMDF 56
Query: 544 QTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEEL 603
T+++ + + +Y+S EF AD + +N+ YN ++ A+++L +++ +E
Sbjct: 57 GTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMM--SKER 114
Query: 604 LMRLEKAIN 612
L+ L+++++
Sbjct: 115 LLALKRSMS 123
Score = 113 bits (284), Expect = 2e-29
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
+L+ F PV Y +++ PMD T+ K +++Y S EF AD +L+
Sbjct: 23 RQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMC 82
Query: 693 SNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTIS 735
N++ YN P + + A+K+L + K + L L++++S
Sbjct: 83 DNAMTYNRPDTVYYKLAKKILHAGFKMMSK--ERLLALKRSMS 123
Score = 62.8 bits (153), Expect = 9e-12
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ PMD T+ K +++Y S EF AD +L+ N++ YN P +
Sbjct: 51 KHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVY 95
>3rcw_A Bromodomain-containing protein 1; transcription, structural
genomics, structural consortium, SGC; 2.21A {Homo
sapiens}
Length = 135
Score = 126 bits (317), Expect = 1e-33
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 483 QKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMD 542
++ A R P LT +L +L++++D F+ PV+ K VPDY + PMD
Sbjct: 3 EQVAMELRLTP---LTVLLRSVLDQLQDKDPARI----FAQPVSLKEVPDYLDHIKHPMD 55
Query: 543 LQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGK--K 600
T+R+ L ++ Y++ EF D + I++N YN ++ AA R+ +L + +
Sbjct: 56 FATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARR 115
Query: 601 EELLMRLEKAINPLLDD 617
E + LE+A L +
Sbjct: 116 EVDSIGLEEASGMHLPE 132
Score = 109 bits (274), Expect = 6e-28
Identities = 26/99 (26%), Positives = 51/99 (51%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
++L++ A IF +PV+ K DY ++ PMD T+ K+ ++ Y + +EF D +LI+
Sbjct: 23 DQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLII 82
Query: 693 SNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLE 731
N + YN + A +L ++ + L + + +
Sbjct: 83 DNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIG 121
Score = 62.5 bits (152), Expect = 2e-11
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMD T+ K+ ++ Y + +EF D +LI+ N + YN +
Sbjct: 52 HPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVF 95
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 121
Score = 120 bits (302), Expect = 8e-32
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 617 DNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSH 676
+ + + +L+ IF +PV DY ++KPMD T+ + +++
Sbjct: 2 SSGSSGFLILLRKTLE-QLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAY 60
Query: 677 KYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTIS 735
+Y + +F D LI+SN + YN + A +L E+ L + ++ S
Sbjct: 61 RYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGSGPS 119
Score = 118 bits (297), Expect = 4e-31
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ 556
+L K L ++++ FS PV VPDY + +PMD T+++NL + +Y
Sbjct: 8 FLILLRKTLEQLQEKDTGNI----FSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYL 63
Query: 557 SREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELLMRLE 608
+ ++F D N IV N YN +I AA R+ +L + ++
Sbjct: 64 NFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMG 115
Score = 64.3 bits (157), Expect = 3e-12
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
KPMD T+ + ++++Y + +F D LI+SN + YN +
Sbjct: 46 KPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIF 89
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation,
coiled-coil, methyltransfer binding, rRNA processing;
HET: SAM; 2.60A {Sulfolobus solfataricus}
Length = 268
Score = 123 bits (309), Expect = 4e-31
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Query: 1220 ESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGN 1279
+ L ++A +ID I L E Y+ FPELD L+ EY V G+
Sbjct: 132 AAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGD 191
Query: 1280 DLDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSI 1339
T ++ + + I + A + G +SE++LS + + +L + ++
Sbjct: 192 RGFLTIDSLK-ELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNL 250
Query: 1340 FEYVESRMTYIAPNLS 1355
Y+E M +A +
Sbjct: 251 NNYLEGVMKEVAHHHH 266
>3d7c_A General control of amino acid synthesis protein 5; GCN5,
bromodomain, structural genomics consortium, SGC,
HOST-virus interaction, nucleus; 2.06A {Homo sapiens}
SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A*
1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Length = 112
Score = 116 bits (292), Expect = 2e-30
Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 615 LDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQ 674
++D DQ L +++ ++K+ AW F++PV K DYY V++ P+DL+T+ ++ +
Sbjct: 2 MEDPDQ--LYTTLKNLLA-QIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLR 58
Query: 675 SHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLE 714
S Y +R F+AD++ +++N YN P S+ A L +
Sbjct: 59 SRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEK 98
Score = 112 bits (282), Expect = 3e-29
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 487 NRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTI 546
+ D L + L+ +L +++ P F PV PDYY+++ P+DL+T+
Sbjct: 1 SMEDPDQ---LYTTLKNLLAQIKSHPSAWP----FMEPVKKSEAPDYYEVIRFPIDLKTM 53
Query: 547 RENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELL 597
E LRS+ Y +R+ F+AD+ +++ N YN S A + L
Sbjct: 54 TERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKL 104
Score = 66.6 bits (163), Expect = 3e-13
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
P+DL+T+ ++ +S Y +R F+AD++ +++N YN P S+
Sbjct: 46 FPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEY 89
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix
bundle, transcription; NMR {Homo sapiens}
Length = 117
Score = 111 bits (280), Expect = 6e-29
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ 556
L L +++ +++ + FSFPV + P Y I+ PMD T++E +++ YQ
Sbjct: 9 LQEALNQLMRQLQRKDPSAF----FSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQ 64
Query: 557 SREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKE 601
S EE + + N+ +YN ++I AA+++L +++L ++
Sbjct: 65 SIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQER 109
Score = 110 bits (278), Expect = 1e-28
Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 615 LDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQ 674
+++ +Q L + ++ +L+ + F PV Y +++ PMD T+ +K +
Sbjct: 1 MEEVEQTPLQEALNQLMR-QLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIK 59
Query: 675 SHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKY 723
++ Y S E + +L+ +N+++YN P + + A+KLL L +
Sbjct: 60 NNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQE 108
Score = 62.7 bits (153), Expect = 8e-12
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMD T+ +K +++ Y S E + +L+ +N+++YN P +
Sbjct: 47 HPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIY 90
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear
coregulator cancer-associated Pro2000 protein, two AAA
DOMA containing protein; 1.95A {Homo sapiens} PDB:
3lxj_A
Length = 130
Score = 111 bits (280), Expect = 9e-29
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 623 LSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRY 682
L ++ + +L +F KPV+ DY +V+++PMDL ++ K HKY +
Sbjct: 11 LRIFLRNVTH-RLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVK 69
Query: 683 EFLADIELILSNSVLYNGPGSQVT----EKAEKLLEEAKLALEK-YDDHLTQLEKTISQV 737
++L DI+LI SN++ YN +A L + A +++ D+ QL + I +
Sbjct: 70 DYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQES 129
Query: 738 R 738
R
Sbjct: 130 R 130
Score = 103 bits (259), Expect = 6e-26
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ 556
L L + + + + F+ PV+ VPDY ++ +PMDL ++ + KY
Sbjct: 11 LRIFLRNVTHRLAIDKRFRV----FTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYL 66
Query: 557 SREEFLADVNQIVENSTLYNGAKS----ILTDAARRMLTLCVELLGKK--EELLMRLEKA 610
+ +++L D++ I N+ YN + ++ A + ++ ++ E+ E+
Sbjct: 67 TVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEI 126
Score = 63.2 bits (154), Expect = 8e-12
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+PMDL ++ K HKY + ++L DI+LI SN++ YN
Sbjct: 49 QPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPG 92
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain,
histone binding, N-acetyl lysine; HET: ALY; 1.87A
{Saccharomyces cerevisiae} SCOP: a.29.2.1
Length = 121
Score = 111 bits (279), Expect = 1e-28
Identities = 31/99 (31%), Positives = 58/99 (58%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
+L+N A AW F++PVNK+ DYY +++PMDL T+ K +S+KY +F+ D L+
Sbjct: 23 TELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVF 82
Query: 693 SNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLE 731
+N +YNG + + A +L + +++ ++ ++
Sbjct: 83 NNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEYSHLID 121
Score = 108 bits (273), Expect = 6e-28
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 486 ANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQT 545
A R + P + ++ IL E+++ + P F PVN + VPDYY + PMDL T
Sbjct: 6 AQRPKRGP---HDAAIQNILTELQNHAAAWP----FLQPVNKEEVPDYYDFIKEPMDLST 58
Query: 546 IRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELLM 605
+ L S KYQ E+F+ D + N +YNG + A R+ + + E
Sbjct: 59 MEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEYSH 118
Query: 606 RLE 608
++
Sbjct: 119 LID 121
Score = 64.3 bits (157), Expect = 3e-12
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+PMDL T+ K +S+KY +F+ D L+ +N +YNG +
Sbjct: 52 EPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSY 95
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent
small and homeotic disks prote homolog, lysine
N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Length = 126
Score = 105 bits (263), Expect = 2e-26
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 620 QVALSFIFDDIVNNK-LKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKY 678
I D I++ K A A + KK DYY + P+DL TI K+ + Y
Sbjct: 11 AQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYY 70
Query: 679 HSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTISQ 736
+ F AD+ + N+ Y G S V +L K + Q+++ + +
Sbjct: 71 KTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLR---KAYYNARHEASAQIDEIVGE 125
Score = 92.4 bits (230), Expect = 5e-22
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 497 LTSILEKILNEMRDM--SQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKK 554
L I ++I + + S + K DYY+ ++ P+DL TI + + +
Sbjct: 10 LAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGY 69
Query: 555 YQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEE 602
Y++ E F AD+ ++ N+ Y G KS + R+ +
Sbjct: 70 YKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASA 117
Score = 60.8 bits (148), Expect = 5e-11
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
P+DL TI K+ + Y + F AD+ + N+ Y G S V
Sbjct: 53 SDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPV 97
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2,
KIAA1 WALP4, structural genomics consortium, SGC,
transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Length = 117
Score = 104 bits (261), Expect = 3e-26
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
+++ DAW F+ PVN K Y V++KPMD TI +K S +Y + F D+ L+
Sbjct: 23 TEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVF 82
Query: 693 SNSVLYNGPGSQVTEKAEKLLE--EAKLA 719
N +N S + + + E K
Sbjct: 83 DNCETFNEDDSDIGRAGHNMRKYFEKKWT 111
Score = 102 bits (256), Expect = 1e-25
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 483 QKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMD 542
+KP +R ++ IL EM P F PVN KLVP Y K++ +PMD
Sbjct: 5 KKP--KRDDSK---DLALCSMILTEMETHEDAWP----FLLPVNLKLVPGYKKVIKKPMD 55
Query: 543 LQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEE 602
TIRE L S +Y + E F DV + +N +N S + A M + +
Sbjct: 56 FSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115
Score = 64.2 bits (157), Expect = 3e-12
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
KPMD TI +K S +Y + F D+ L+ N +N S +
Sbjct: 52 KPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDI 95
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 105 bits (264), Expect = 5e-26
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 465 KKRKANNPDNQLDYLKRHQKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFP 524
+ +A D + + + A T L+++L ++ P F P
Sbjct: 41 LQSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDYEGLKRVLRSLQAHKMAWP----FLEP 96
Query: 525 VNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTD 584
V+ PDYY ++ PMDL T+ E ++ + Y+ EF+AD+ +I +N YN + S
Sbjct: 97 VDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQ 156
Query: 585 AARRMLTLCVELL 597
A + + V+ L
Sbjct: 157 CAEVLESFFVQKL 169
Score = 104 bits (261), Expect = 1e-25
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
L+ AW F++PV+ DYY V+++PMDL T+ ++ Q Y EF+AD+ I
Sbjct: 82 RSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIF 141
Query: 693 SNSVLYNGPGSQVTEKAEKLLE 714
N YN S + AE L
Sbjct: 142 DNCRYYNPSDSPFYQCAEVLES 163
Score = 63.4 bits (154), Expect = 2e-11
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+PMDL T+ ++ Q Y EF+AD+ I N YN S
Sbjct: 111 EPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPF 154
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 131
Score = 102 bits (257), Expect = 1e-25
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 623 LSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRY 682
L D+ +L IF KPV+ DY V+++PMDL T+ K H Y +
Sbjct: 13 LRLFLRDVTK-RLATDKRFNIFSKPVS-----DYLEVIKEPMDLSTVITKIDKHNYLTAK 66
Query: 683 EFLADIELILSNSVLYNGPGSQVTEKAEKLLEE-----AKLALEKYDDHLTQLEKTISQV 737
+FL DI+LI SN++ YN + + + D +L + I +
Sbjct: 67 DFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLCEEIKES 126
Query: 738 RARA 741
+
Sbjct: 127 GPSS 130
Score = 90.6 bits (225), Expect = 2e-21
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ 556
L L + + + FS PV DY +++ PMDL T+ + Y
Sbjct: 13 LRLFLRDVTKRLATDKRFNI----FSKPV-----SDYLEVIKEPMDLSTVITKIDKHNYL 63
Query: 557 SREEFLADVNQIVENSTLYNGAKSILTDAARRM 589
+ ++FL D++ I N+ YN K R
Sbjct: 64 TAKDFLKDIDLICSNALEYNPDKDPGDKIIRHR 96
Score = 63.6 bits (155), Expect = 6e-12
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 1064 STVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
V ++PMDL T+ K H Y + +FL DI+LI SN++ YN
Sbjct: 41 LEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPG 89
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; 1.63A {Homo sapiens}
Length = 116
Score = 100 bits (251), Expect = 6e-25
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 615 LDDNDQVALSFIFDDIVNNK-LKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKA 673
+ + +++ I + K + +FI+ ++ DYY VV +P+DL I +K
Sbjct: 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKL 61
Query: 674 QSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEK 722
+ +Y AD +L+ +N+ Y P S + A KL + +
Sbjct: 62 KMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNE 110
Score = 93.5 bits (233), Expect = 1e-22
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 497 LTSILEKILNEMRDM--SQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKK 554
++ ++ N +RD Q + F + PDYY++V++P+DL I++ L+ ++
Sbjct: 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEE 65
Query: 555 YQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEE 602
Y AD + N+ Y S AA ++ L + + +
Sbjct: 66 YDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113
Score = 60.8 bits (148), Expect = 5e-11
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+P+DL I +K + +Y AD +L+ +N+ Y P S
Sbjct: 49 SQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPE 93
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all
alpha protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 123
Score = 100 bits (250), Expect = 7e-25
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 622 ALSFIFDDIVNNK-LKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHS 680
++ I D ++N K + +FI+ ++K +YY +++KP+D + I ++ ++HKY S
Sbjct: 17 QMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRS 76
Query: 681 RYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDD 725
+ D+ L+ N+ +N GSQ+ E + L K A +
Sbjct: 77 LGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121
Score = 90.1 bits (224), Expect = 3e-21
Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFP----VNAKLVPDYYKIVTRPMDLQTIRENLRS 552
LT + I++ + + + + +Q S + K +P+YY+++ +P+D + I+E +R+
Sbjct: 14 LTKQMNAIIDTVINY--KDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN 71
Query: 553 KKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEE 602
KY+S + DV + N+ +N S + + + + ++
Sbjct: 72 HKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121
Score = 60.8 bits (148), Expect = 4e-11
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+KP+D + I ++ ++HKY S + D+ L+ N+ +N GSQ+
Sbjct: 57 RKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQI 101
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo01D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.20A {Homo
sapiens}
Length = 130
Score = 100 bits (251), Expect = 8e-25
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 613 PLLDDNDQVALSFIFDDIVNNK-LKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGK 671
L +N ++D + + + + A F +KK + DYY ++ P+ L+ I
Sbjct: 12 DLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRT 71
Query: 672 KAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKA---EKLLEEAKLALEKYDD 725
K ++ +Y + D+ L+ N+ YN P S + ++ +++++ K L + DD
Sbjct: 72 KLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARRDD 128
Score = 92.8 bits (231), Expect = 3e-22
Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 482 HQKPANRRRTDPVVVLTSILEKILNEMRDM--SQTEPNVKQFSFPVNAKLVPDYYKIVTR 539
H + L ++ + +R +Q + + F + K PDYY+ +
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKM 62
Query: 540 PMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVEL--- 596
P+ LQ IR L++++Y++ + D+N + EN+ YN S + ++ +
Sbjct: 63 PISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKE 122
Query: 597 LGKKEEL 603
L +++++
Sbjct: 123 LARRDDI 129
Score = 61.2 bits (149), Expect = 4e-11
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ P+ L+ I K ++ +Y + D+ L+ N+ YN P S +
Sbjct: 61 KMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAI 105
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing,
bromodomain, chromatin RE DNA-binding, nucleus,
phosphoprotein, transcription; 1.50A {Homo sapiens} PDB:
2ktb_B* 3hmf_A
Length = 120
Score = 100 bits (250), Expect = 9e-25
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 622 ALSFIFDDIVNNK-LKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHS 680
L + + IV + +F K +K + DYY+++++P+DL+TI ++ Q+ Y S
Sbjct: 12 ILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKS 71
Query: 681 RYEFLADIELILSNSVLYNGPGSQVTEKA---EKLLEEAKLALEKYDD 725
+ DI+L+ N+ YN PGSQV + A +K+ K +E ++
Sbjct: 72 IHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEM 119
Score = 90.9 bits (226), Expect = 1e-21
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFP----VNAKLVPDYYKIVTRPMDLQTIRENLRS 552
L ILE++L + + T P+ + S + PDYY I+ P+DL+TI + +++
Sbjct: 9 LKEILEQLLEAI--VVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQN 66
Query: 553 KKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEE 602
Y+S D++ + +N+ YN S + A + + + E
Sbjct: 67 GSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEH 116
Score = 62.4 bits (152), Expect = 1e-11
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
++P+DL+TI ++ Q+ Y S + DI+L+ N+ YN PGSQV
Sbjct: 52 KEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQV 96
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1,
chromatin remodelling, acely-lysine binding,
protein-protein interactions; 1.50A {Homo sapiens} PDB:
3uvd_A 2h60_A
Length = 129
Score = 99.8 bits (249), Expect = 1e-24
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 622 ALSFIFDDIVN--NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYH 679
+ I D ++ + + +FI+ ++K +YY +++KP+D + I ++ ++HKY
Sbjct: 15 KMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYR 74
Query: 680 SRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDD 725
S + D+ L+ N+ +N GS + E + L +K +
Sbjct: 75 SLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK 120
Score = 93.6 bits (233), Expect = 2e-22
Identities = 26/109 (23%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 497 LTSILEKILNEMR---DMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSK 553
LT ++KI++ + D S + F + K +P+YY+++ +P+D + I+E +R+
Sbjct: 12 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNH 71
Query: 554 KYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEE 602
KY+S + DV + +N+ +N S++ + + + ++ + K E+
Sbjct: 72 KYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK 120
Score = 60.5 bits (147), Expect = 6e-11
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+KP+D + I ++ ++HKY S + D+ L+ N+ +N GS +
Sbjct: 56 RKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLI 100
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor,
histone, epigenetic reader; HET: 1GH; 1.60A {Homo
sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A*
4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A*
2ydw_A* 2yw5_A
Length = 154
Score = 100 bits (251), Expect = 2e-24
Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 12/154 (7%)
Query: 463 AKKKRKANNPDNQLDYLKRHQKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFS 522
++ + P R L + + ++ + P F
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMSNPKKPGRVTNQ--LQYLHKVVMKALWKHQFAWP----FR 54
Query: 523 FPVNAKL--VPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKS 580
PV+A +PDY+KI+ +PMD+ TI+ L + Y + E + D N + N +YN
Sbjct: 55 QPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTD 114
Query: 581 ILTDAARRM----LTLCVELLGKKEELLMRLEKA 610
+ A+ + L + +++EL++ + K
Sbjct: 115 DIVLMAQTLEKIFLQKVASMPQEEQELVVTIPKN 148
Score = 97.1 bits (242), Expect = 2e-23
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 630 IVNNKLKNMADAWIFIKPVNKKFFK--DYYSVVQKPMDLETIGKKAQSHKYHSRYEFLAD 687
+V L AW F +PV+ DY+ ++++PMD+ TI ++ +++ Y + E + D
Sbjct: 39 VVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQD 98
Query: 688 IELILSNSVLYNGPGSQVTEKAEKLLE--EAKLA 719
+ +N +YN P + A+ L + K+A
Sbjct: 99 FNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVA 132
Score = 62.1 bits (151), Expect = 4e-11
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+PMD+ TI ++ +++ Y + E + D + +N +YN P +
Sbjct: 73 QPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDI 116
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine
binding domain, signaling protein; 1.20A {Mus musculus}
PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A
3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Length = 120
Score = 98.1 bits (245), Expect = 3e-24
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 634 KLKNMADAWIFIKPVNKKFFK--DYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELI 691
K+ A AW F KPV+ + DY +++ PMD+ TI K +S +Y EF AD+ L+
Sbjct: 23 AKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLM 82
Query: 692 LSNSVLYNGPGSQVTEKAEKLLE--EAKLA 719
SN YN P +V A KL + E + A
Sbjct: 83 FSNCYKYNPPDHEVVAMARKLQDVFEMRFA 112
Score = 88.5 bits (220), Expect = 1e-20
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKL--VPDYYKIVTRPMDLQTIRENLRSKKYQSR 558
IL EM + F PV+ + + DY I+ PMD+ TI+ L S++Y+
Sbjct: 14 CSGILKEMFAK-KHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDA 72
Query: 559 EEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEE 602
+EF ADV + N YN + AR++ + K +
Sbjct: 73 QEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116
Score = 62.3 bits (152), Expect = 1e-11
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMD+ TI K +S +Y EF AD+ L+ SN YN P +V
Sbjct: 53 HPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEV 96
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.89A {Homo
sapiens} PDB: 2yem_A*
Length = 130
Score = 98.6 bits (246), Expect = 4e-24
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 634 KLKNMADAWIFIKPVNKKFFK--DYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELI 691
K+ A AW F KPV+ + DY +++ PMD+ TI K ++ +Y EF AD+ L+
Sbjct: 36 AKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLM 95
Query: 692 LSNSVLYNGPGSQVTEKAEKLLE--EAKLA 719
SN YN P +V A KL + E + A
Sbjct: 96 FSNCYKYNPPDHEVVAMARKLQDVFEMRFA 125
Score = 88.9 bits (221), Expect = 1e-20
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 476 LDYLKRHQKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKL--VPDY 533
+ ++H P + + IL EM + F PV+ + + DY
Sbjct: 5 VPDSQQHPAPEKSSKVSEQL---KCCSGILKEMFAK-KHAAYAWPFYKPVDVEALGLHDY 60
Query: 534 YKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRM 589
I+ PMD+ TI+ L +++Y+ +EF ADV + N YN + AR++
Sbjct: 61 CDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 116
Score = 62.4 bits (152), Expect = 2e-11
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMD+ TI K ++ +Y EF AD+ L+ SN YN P +V
Sbjct: 66 HPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEV 109
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.13A {Homo
sapiens}
Length = 150
Score = 98.3 bits (245), Expect = 8e-24
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 623 LSFIFDDIVN--NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHS 680
+ +F+ ++ +F+ +KK + DYY ++ +PMDL+ I ++ KY
Sbjct: 29 MKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAG 88
Query: 681 RYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDH 726
+ D++L+ N+ YN GSQV A L KL EK +
Sbjct: 89 EEGMIEDMKLMFRNARHYNEEGSQVYNDAHIL---EKLLKEKRKEL 131
Score = 94.5 bits (235), Expect = 2e-22
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 483 QKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQ---FSFPVNAKLVPDYYKIVTR 539
+ +R + ++ + N + + + + F + K PDYYKI+
Sbjct: 11 SDTGSAKRKSKKNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILE 70
Query: 540 PMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGK 599
PMDL+ I N+R+ KY E + D+ + N+ YN S + + A +
Sbjct: 71 PMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHIL---------- 120
Query: 600 KEELLMRLEKAINPLLDDNDQVA 622
E+LL K + PL DD+D +
Sbjct: 121 -EKLLKEKRKELGPLPDDDDMAS 142
Score = 61.4 bits (149), Expect = 6e-11
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+PMDL+ I ++ KY + D++L+ N+ YN GSQV
Sbjct: 69 LEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQV 113
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics,
structural genomi consortium, SGC; 2.50A {Plasmodium
falciparum 3D7}
Length = 166
Score = 98.8 bits (246), Expect = 1e-23
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 10/148 (6%)
Query: 479 LKRHQKPANRRRTDPVVV---LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKL--VPDY 533
+ H ++ R + +++ + F V+AK PDY
Sbjct: 1 MHHHHHHSSGRENLYFQGNKQWYLLANQLILSLSKYEGGHI----FEKLVDAKKQNCPDY 56
Query: 534 YKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLC 593
Y ++ PM I+ L+ +Y EF+ DV I +N +LYN + S++ + + T
Sbjct: 57 YDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYF 116
Query: 594 VELLGK-KEELLMRLEKAINPLLDDNDQ 620
L + EK IN +L ++
Sbjct: 117 NNQLIVMGYNNFILKEKKINDMLKLVEE 144
Score = 96.8 bits (241), Expect = 4e-23
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 633 NKLKNMADAWIFIKPVNKKFFK--DYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIEL 690
L IF K V+ K DYY V++ PM I K + +Y EF+ D++L
Sbjct: 31 LSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQL 90
Query: 691 ILSNSVLYNGPGSQVTEKAEKLLE--EAKLALEKYDDHLTQLEKTISQVRARAMEQADVD 748
I N LYN S V + + +L + Y++ + + EK I+ + E+
Sbjct: 91 IFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYNNFILK-EKKINDMLKLVEEENIKW 149
Query: 749 S 749
S
Sbjct: 150 S 150
Score = 61.8 bits (150), Expect = 6e-11
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PM I K + +Y EF+ D++LI N LYN S V
Sbjct: 62 NPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVV 105
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.35A {Homo
sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A*
3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A*
3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A*
2nxb_A ...
Length = 127
Score = 97.0 bits (242), Expect = 1e-23
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 631 VNNKLKNMADAWIFIKPVNKKFFK--DYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADI 688
V L AW F +PV+ DYY +++ PMD+ TI K+ +++ Y + E + D
Sbjct: 29 VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDF 88
Query: 689 ELILSNSVLYNGPGSQVTEKAEKLLE--EAKLA 719
+ +N +YN PG + AE L + K+
Sbjct: 89 NTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN 121
Score = 95.1 bits (237), Expect = 6e-23
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 480 KRHQKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKL--VPDYYKIV 537
P +R L +L +L + P F PV+A +PDYYKI+
Sbjct: 7 PETSNPNKPKRQTNQ--LQYLLRVVLKTLWKHQFAWP----FQQPVDAVKLNLPDYYKII 60
Query: 538 TRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRM 589
PMD+ TI++ L + Y + +E + D N + N +YN + A +
Sbjct: 61 KTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEAL 112
Score = 62.3 bits (152), Expect = 2e-11
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMD+ TI K+ +++ Y + E + D + +N +YN PG +
Sbjct: 62 TPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDI 105
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 1.66A {Homo
sapiens} PDB: 3g0j_A 2yqd_A
Length = 124
Score = 97.0 bits (242), Expect = 1e-23
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 620 QVALSFIFDDIVNNK-LKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKY 678
Q L+ +++ + N + + IF++ ++ DYY ++KPMD+E I ++KY
Sbjct: 17 QQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKY 76
Query: 679 HSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDD 725
+ D ++ +N+ YN P S + + A L K+ LE D
Sbjct: 77 QDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLH---KVLLETRRD 120
Score = 90.5 bits (225), Expect = 2e-21
Identities = 22/117 (18%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 489 RRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSF--PVNAKLVPDYYKIVTRPMDLQTI 546
+++ + + L ++ +++ + F + +PDYY + +PMD++ I
Sbjct: 8 KKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKI 67
Query: 547 RENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEEL 603
R ++ + KYQ + + D + N+ YN +S++ A + + +E + +L
Sbjct: 68 RSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLE---TRRDL 121
Score = 60.8 bits (148), Expect = 5e-11
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+KPMD+E I ++KY + D ++ +N+ YN P S +
Sbjct: 59 KKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLI 103
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 96.3 bits (240), Expect = 2e-23
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 480 KRHQKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTR 539
+ ++ NR ++ + E++LN + +EP F PV+ PDY I+
Sbjct: 5 QPRRRLRNRAQSYDIQAWKKQCEELLNLIFQCEDSEP----FRQPVDLLEYPDYRDIIDT 60
Query: 540 PMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAK-SILTDAARRMLTLCVELLG 598
PMD T+RE L + Y+S E DV I NS Y +K S + + R+ E +
Sbjct: 61 PMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHIS 120
Query: 599 K 599
Sbjct: 121 S 121
Score = 89.4 bits (222), Expect = 8e-21
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
N + D+ F +PV+ + DY ++ PMD T+ + ++ Y S E D+ LI
Sbjct: 31 NLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIF 90
Query: 693 SNSVLYNGP-GSQVTEKAEKLLE--EAKLA--LEKYDDHLTQLEK 732
SNS Y S++ + +L E ++ L Y L ++
Sbjct: 91 SNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALRFHKR 135
Score = 53.6 bits (129), Expect = 2e-08
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGP-GSQV 1112
PMD T+ + ++ Y S E D+ LI SNS Y S++
Sbjct: 60 TPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRI 104
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP,
crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST,
bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens}
PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A*
1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Length = 119
Score = 95.4 bits (238), Expect = 3e-23
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 629 DIVNNKLKNMADAWIFIKPVNKKFFK--DYYSVVQKPMDLETIGKKAQSHKYHSRYEFLA 686
+ + ++ F +PV+ + DY+ +V+ PMDL TI +K + +Y ++++
Sbjct: 18 PTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVD 77
Query: 687 DIELILSNSVLYNGPGSQVTEKAEKLLE 714
D+ L+ +N+ LYN S+V + KL E
Sbjct: 78 DVWLMFNNAWLYNRKTSRVYKFCSKLAE 105
Score = 90.1 bits (224), Expect = 2e-21
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 501 LEKILNE-MRDMSQTEPNVKQFSFPVNAKL--VPDYYKIVTRPMDLQTIRENLRSKKYQS 557
L L R ++ P F PV+ +L +PDY+ IV PMDL TI+ L + +YQ
Sbjct: 16 LMPTLEALYRQDPESLP----FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQE 71
Query: 558 REEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELL 604
+++ DV + N+ LYN S + ++ + + + + L
Sbjct: 72 PWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118
Score = 61.9 bits (151), Expect = 2e-11
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMDL TI +K + +Y ++++ D+ L+ +N+ LYN S+V
Sbjct: 53 NPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRV 96
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics
consortium, SGC, cell cycle progression, signal
transduction, apoptosis; 1.74A {Homo sapiens}
Length = 123
Score = 94.7 bits (236), Expect = 7e-23
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 501 LEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREE 560
++++N + +EP F PV+ PDY I+ PMD T+RE L + Y S E
Sbjct: 15 CKELVNLIFQCEDSEP----FRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLE 70
Query: 561 FLADVNQIVENSTLYNGAK-SILTDAARRMLTLCVELLGK 599
F D+ I N+ Y K S + R+ L E + K
Sbjct: 71 FCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKK 110
Score = 92.8 bits (231), Expect = 3e-22
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
N + D+ F +PV+ + DY ++ PMD T+ + + Y S EF DI LI
Sbjct: 20 NLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIF 79
Query: 693 SNSVLYN-GPGSQVTEKAEKLLE 714
SN+ Y S++ +L
Sbjct: 80 SNAKAYTPNKRSKIYSMTLRLSA 102
Score = 56.6 bits (137), Expect = 2e-09
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYN-GPGSQV 1112
PMD T+ + + Y S EF DI LI SN+ Y S++
Sbjct: 49 TPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKI 93
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural
genomics, NPPSFA; 2.50A {Homo sapiens}
Length = 135
Score = 92.0 bits (229), Expect = 9e-22
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSH--KYHSRYEFLADIEL 690
L + F PV DYY +++ PMDL TI K+ Q Y +F+AD L
Sbjct: 30 LFLYCHEMSLAFQDPVPLTV-PDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRL 88
Query: 691 ILSNSVLYNGPGSQVTEKAEKLLE--EAKLA 719
I N +N P S+V KL E L
Sbjct: 89 IFQNCAEFNEPDSEVANAGIKLENYFEELLK 119
Score = 90.1 bits (224), Expect = 4e-21
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 485 PANRRRTDPVVVLTS----ILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRP 540
+ +++T+ +V LT E++L + + F PV VPDYYKI+ P
Sbjct: 5 SSGKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLA----FQDPVP-LTVPDYYKIIKNP 59
Query: 541 MDLQTIRENLRSK--KYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELL 597
MDL TI++ L+ Y E+F+AD I +N +N S + +A ++ ELL
Sbjct: 60 MDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELL 118
Score = 57.8 bits (140), Expect = 8e-10
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 1069 KPMDLETIGKKAQSH--KYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMDL TI K+ Q Y +F+AD LI N +N P S+V
Sbjct: 58 NPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEV 103
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 90.0 bits (223), Expect = 2e-20
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSH--KYHSRYEFLADIEL 690
L + F PV DYY +++ PMDL TI K+ Q Y +F+AD L
Sbjct: 91 LFLYCHEMSLAFQDPVPLTV-PDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRL 149
Query: 691 ILSNSVLYNGPGSQVTEKAEKLLE--EAKLA 719
I N +N P S+V KL E L
Sbjct: 150 IFQNCAEFNEPDSEVANAGIKLENYFEELLK 180
Score = 83.5 bits (206), Expect = 3e-18
Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 10/161 (6%)
Query: 441 IKHAEEVKRKSLLLKVPKEALHAKKKRKANNPDN--QLDYLKRHQKPANRRRTDPVVVLT 498
+ H +L E + + + +K +
Sbjct: 25 VFH-LSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEGLVKLTPIDK 83
Query: 499 SILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRS--KKYQ 556
E++L + + F PV VPDYYKI+ PMDL TI++ L+ Y
Sbjct: 84 RKCERLLLFLYCHEMSLA----FQDPVP-LTVPDYYKIIKNPMDLSTIKKRLQEDYSMYS 138
Query: 557 SREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELL 597
E+F+AD I +N +N S + +A ++ ELL
Sbjct: 139 KPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELL 179
Score = 57.3 bits (138), Expect = 3e-09
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 1068 QKPMDLETIGKKAQSH--KYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ PMDL TI K+ Q Y +F+AD LI N +N P S+V
Sbjct: 118 KNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEV 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 82.2 bits (202), Expect = 1e-15
Identities = 85/669 (12%), Positives = 201/669 (30%), Gaps = 180/669 (26%)
Query: 281 KFLK--PCEEKPNANSP-FSSNQMD-----PNALN-----ITIILAEFSRSIEHSVTLMI 327
F+ C++ + S ++D +A++ +L++ ++ V ++
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 328 RL----LRQEILPAPDSPPRSSTPSNMFHSKHRSDSSLTPKRK-YKSKPDLKVKCGAC-- 380
R+ L I P + + +D+ + K + +P LK++
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 381 ----GLVGH-MR-------TNKACPQYSLTGQMPMNVA-MTEEQEEEYGKVIDCDEEALV 427
++ + C Y + +M + + + E L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN------LKNC-NSPETVLE 200
Query: 428 NVEGTKVTLSGKLIKHAEEVKRKSLLLKVPKEALHAKKKRKANNPDNQLDYLKRHQKPAN 487
++ L ++ + S +K+ ++ A+ +R LK
Sbjct: 201 MLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR----------LLKSKPYE-- 244
Query: 488 RRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIR 547
+L +L +++ +F ++ K++ + TR +
Sbjct: 245 ----------NCLL--VLLNVQN-----AKAWN-AFNLSCKIL-----LTTRFKQVTDFL 281
Query: 548 ENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELLMRL 607
+ + LT + +L ++ L + + L R
Sbjct: 282 SAATTTHISLDHHSMT------------------LTP--DEVKSLLLKYLDCRPQDLPRE 321
Query: 608 EKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLE 667
NP LS I+ +++ W K VN ++++ L
Sbjct: 322 VLTTNPR-------RLS-----IIAESIRDGLATWDNWKHVNCDKLT---TIIE--SSLN 364
Query: 668 TIGKKAQSHKYHSRYEFLA------DI-ELILSNSVLYNGPGSQVTEKAEKLLEEAKLAL 720
+ + +Y ++ L+ I ++L S+++ L + L
Sbjct: 365 VL----EPAEYRKMFDRLSVFPPSAHIPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 721 EKYDD-----HLTQLEKTISQVRARAMEQADVDSFSTWTQDDDQFQSGLDKED---FEYT 772
++ + LE + A+ ++ VD ++ + D D + +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI-PKTFDSDDLIPPYLDQYFYSHI 477
Query: 773 DAEG----NIKKENDGGLLEK---DLEFSSEEERDDTISSNQAWTKKILN-IRMLRFQSG 824
G NI+ L D F ++ R D+ + N + ILN ++ L+F
Sbjct: 478 ---GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA--SGSILNTLQQLKF--- 529
Query: 825 LDKEDFEYTDAEGNI-KKENDGGLLEKDLE-FSSEEERD--------------DNDMEEV 868
Y + I + L + F + E + + E +
Sbjct: 530 -------Y---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 869 VDDDSQQAA 877
++ +Q
Sbjct: 580 FEEAHKQVQ 588
Score = 78.0 bits (191), Expect = 2e-14
Identities = 101/762 (13%), Positives = 204/762 (26%), Gaps = 267/762 (35%)
Query: 514 TEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENST 573
E Q+ ++ + D + +++ +S S+EE ++ I+ +
Sbjct: 9 FETGEHQYQ---YKDILSVFEDAFVDNFDCKDVQDMPKS--ILSKEE----IDHIIMSKD 59
Query: 574 LYNGAKSILTDAARRMLTLCVELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIVNN 633
+G R+ LL K+EE++ +K + +L N F+ I
Sbjct: 60 AVSGT--------LRLFWT---LLSKQEEMV---QKFVEEVLRIN----YKFLMSPIKTE 101
Query: 634 KLKNMADAWIFIKPVNKKF-----FKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADI 688
+ + ++I+ ++ + F Y V + + + L
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLE---------LRPA 150
Query: 689 ELILSNSVLY--NGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEK-------TISQVRA 739
+ + ++ G G +AL+ + Q + +
Sbjct: 151 KNV----LIDGVLGSGKTW------------VALDVCLSYKVQCKMDFKIFWLNLKNCN- 193
Query: 740 RAMEQADVDSFSTWTQDDDQFQSGLDKEDFEYTDAEGNIKKE-NDGGLLEKDLEFSSEEE 798
++ Q +D +D NIK + + L S E
Sbjct: 194 ------SPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 799 R-----DDTISSNQAWTKKILNI-----RML---RFQSGLDKEDFEYT------DAEGNI 839
+ K N ++L RF+ D T +
Sbjct: 245 NCLLVLLNV------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 840 KKENDGGLLEKDLEFSSEEERDDNDMEEVVDDD----SQQAAEAMVQLGNITYYTDPNTE 895
+ LL K L+ ++ EV+ + S A L + N +
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLP-----REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 896 ETSMDVDPNYDPSEFLLNRTEQPMVNKPSSGVMGNDGFILNPQQAMSSHDSEIKTEDDDL 955
+ + ++ + + +L P +E + D L
Sbjct: 354 KLTTIIESSLN---------------------------VLEP--------AEYRKMFDRL 378
Query: 956 AVSHPCFWLCSFPDGCSHNLGPISHCWKDSLWTPRVIFWSLCMSIDSYLCLGIYTAPFSE 1015
+V FP + + L +
Sbjct: 379 SV---------FPP--------------SAHIPTIL--------------LSLI------ 395
Query: 1016 SHSGWVQLANIDLPVFRFNMSLADELLADMRLLQCCSETHGSRNHREESTVSQKPMDLET 1075
W + D+ M + ++L L++ +EST+S + LE
Sbjct: 396 ----WFDVIKSDV------MVVVNKL-HKYSLVEK---------QPKESTISIPSIYLEL 435
Query: 1076 IGKKAQSHKYHSR----YEFLADIELILSNSVLYNGPGSQVLINIWWHFIEIKSSFKTNN 1131
K + H Y + + L ++ I
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFD--------SDDLIPPYLDQYFYSHI---------- 477
Query: 1132 VQILSGGFHSLCGSSRSIEPNTRQSRNVWHGSGNLKTLTSTLFY-FVF-QAKSIHQIAKL 1189
G H L N + TL +F F F + K H
Sbjct: 478 ------GHH-L--------KNIEHPERM--------TLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 1190 RNSEQLQNVMTSIEKYQKSNQSQAPIVGPVESDPEYQLIVEA 1231
S + N + ++ Y+ I ++DP+Y+ +V A
Sbjct: 515 NASGSILNTLQQLKFYKPY------I---CDNDPKYERLVNA 547
Score = 72.6 bits (177), Expect = 9e-13
Identities = 87/656 (13%), Positives = 190/656 (28%), Gaps = 196/656 (29%)
Query: 408 TEEQEEEYGKVIDCDEEALV-NVEGTKVTLSGKLIKHAEEVKRKSLLLKVPKEALHAKKK 466
T E + +Y ++ E+A V N + V K I EE+ ++
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH---IIMSK--------- 58
Query: 467 RKANNPDNQLDYL----KRHQKPANRRRTDPVVVLTS--ILEKILNEMRDMSQTEPNVKQ 520
+ + L Q+ ++ + V+ + ++ I E R Q +
Sbjct: 59 ----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR---QPSMMTRM 111
Query: 521 FSFPVN-----AKLVPDYYKIVTRPMDLQTIRENL------------------------- 550
+ + ++ Y V+R +R+ L
Sbjct: 112 YIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 551 --RSKKYQSREEF------LADVN---QIVEN-STLYNGAKSILTDAARRMLTLCVELLG 598
S K Q + +F L + N ++E L T + + + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 599 KKEEL--LMRLEKAINPL--LDD--NDQVALSF--------------IFDDIVNNKLKNM 638
+ EL L++ + N L L + N + +F + D + ++
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 639 A---DAWIFIKPVNKKFFKDYYSV-VQK---------PMDLETIGKKAQSHKYHSRYEFL 685
+ + K Y Q P L I + + + ++
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--ATWDNW 347
Query: 686 ADIEL-----ILSNSVLYNGPGSQVTEKAE--KLLEEAKLALEKYDDHLTQLEKTISQVR 738
+ I+ +S+ V E AE K+ + L++ H+ +S +
Sbjct: 348 KHVNCDKLTTIIESSL-------NVLEPAEYRKMFDR--LSVFPPSAHIP--TILLSLI- 395
Query: 739 ARAMEQADVDSFSTWTQDDDQFQSGLDKEDFEYTDAEGNIKKENDGGLLEKDLEFSSEEE 798
W + + +Y+ E KE+ + + + +
Sbjct: 396 --------------WFDVIKSDVMVVVNKLHKYSLVEKQ-PKESTISIP--SIYLELKVK 438
Query: 799 RDDTISSNQAWTKKILNIRMLRFQSGLDKEDFEYTDAEG-----------NIKKENDGGL 847
++ + + + I++ D +D + NI+ L
Sbjct: 439 LENEYALH----RSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 848 LEK---DLEFSSEEERDD----NDMEEVVDDDSQQAAEAMVQLGNITYYTDPNTEETSMD 900
D F ++ R D N +++ L + +Y + D
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNT-----------LQQLKFY-----KPYICD 536
Query: 901 VDPNY-----DPSEFLLNRTEQPMVNKPSSGVMGNDGFILNPQQAMSSHDSEIKTE 951
DP Y +FL + E+ ++ + ++ + A+ + D I E
Sbjct: 537 NDPKYERLVNAILDFLP-KIEENLICSKYTDLL---------RIALMAEDEAIFEE 582
Score = 54.9 bits (131), Expect = 3e-07
Identities = 96/559 (17%), Positives = 164/559 (29%), Gaps = 182/559 (32%)
Query: 800 DDTISSNQAWTKKILNIRMLRFQSGLDKEDFEYTDAEGNI--KKENDGGLLEKDLEFSSE 857
D +Q K IL++ F D +D + D +I K+E D ++ KD
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKD-----A 60
Query: 858 EERDDNDMEEVVDDDSQQAAEAMVQLGNITY----------YTDP--NTEETSMDVDPNY 905
++ + + + ++ I Y P T D Y
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 906 -DPSEFL-LNRTEQPMVNK---------PSSGV----MGNDGF---ILNPQQAMSSHDSE 947
D F N + K P+ V + G + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL--GSGKTWV---ALDVCLSYK 175
Query: 948 IKTEDDDLAVSHPCFWLCSFPDGCSHNLGPISHCWKDSLWTPRVIFWSLCMSIDSYLCLG 1007
++ + D FWL NL +C + L ID
Sbjct: 176 VQCKMDF-----KIFWL---------NLK---NCNSPETVL--EMLQKLLYQIDPNWT-- 214
Query: 1008 IYTAPFSESHSGWVQLANIDLPVFRFNMSLADELLADMRLLQCCSETHGS-----RNHRE 1062
S S +NI L R + S+ EL RLL+ S+ + + N +
Sbjct: 215 ------SRSD----HSSNIKL---RIH-SIQAELR---RLLK--SKPYENCLLVLLNVQN 255
Query: 1063 ESTVSQKPMDLE-----TIGKKAQSHKYHSRYEFLAD---------IELILSNSVLYNGP 1108
+L T +R++ + D I L + L
Sbjct: 256 AKAW--NAFNLSCKILLT-----------TRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 1109 GSQVLINIWWHFIEIKSS------FKTNNVQILSGGFHSLCGSSRSIEPNTRQ-SRNVWH 1161
+L+ +++ + TN ++ S+ S T ++V
Sbjct: 303 VKSLLLK----YLDCRPQDLPREVLTTNPRRL------SIIAESIRDGLATWDNWKHV-- 350
Query: 1162 GSGNLKTLTSTL--------------FY---FVFQAKSIH----QIAKLRNSEQLQNVMT 1200
N LT+ + + VF S H ++ + +VM
Sbjct: 351 ---NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMV 406
Query: 1201 SIEKYQKSNQSQAPIVGPVESDPE------YQLIVEANNLAVEIDTEIGLIHRFAVEKYN 1254
+ K K VE P+ + +E L V+++ E L HR V+ YN
Sbjct: 407 VVNKLHKY--------SLVEKQPKESTISIPSIYLE---LKVKLENEYAL-HRSIVDHYN 454
Query: 1255 --KRFPELDTLVVSPLE-Y 1270
K F D L+ L+ Y
Sbjct: 455 IPKTFD-SDDLIPPYLDQY 472
Score = 44.1 bits (103), Expect = 6e-04
Identities = 62/481 (12%), Positives = 138/481 (28%), Gaps = 134/481 (27%)
Query: 1084 KYH-SRYEFLADIELIL------SNSVLY--NGPGSQVLI---------------NIWWH 1119
KY+ SR + + L N ++ G G + I+W
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW- 186
Query: 1120 FIEIKSSFKTNNV-QILSGGFHSLCGSSRSIEPNTRQ----SRNVWHGSGNLKTLTSTLF 1174
+ +K+ V ++L L I+PN S N+ +++ L
Sbjct: 187 -LNLKNCNSPETVLEMLQ----KLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 1175 YFVFQAKSIHQIAKL-----RNSEQL-------QNVMTSIEKYQKSNQSQAPIVGPVESD 1222
++ L +N++ + ++T+ + +
Sbjct: 239 -----KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT------RFKQVTDFLSAAT-- 285
Query: 1223 PEYQLIVEANNLAVEIDTEIGLIHRFAVEKY-NKRFPEL--DTLVVSPL------EYLRT 1273
+ ++ +++ + D L KY + R +L + L +P E +R
Sbjct: 286 -TTHISLDHHSMTLTPDEVKSL---LL--KYLDCRPQDLPREVLTTNPRRLSIIAESIR- 338
Query: 1274 VRELGNDLDQTKNNETLQQVLTQA--TIMVVSVTASTTQGQLLSEEELSEVYQACDMAFE 1331
+ L N + V TI+ S+ L E +++
Sbjct: 339 -----DGLATWDN---WKHVNCDKLTTIIESSLNV-------LEPAEYRKMFDRL----- 378
Query: 1332 LNQFKTSIFEYVESRMTYIAPNLSAIV-GASTAAKMMGVAGGLSRLS-----KMPGVAG- 1384
S+F S +I L +++ + +M V L + S
Sbjct: 379 ------SVFP--PS--AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 1385 -GLSRLSKMPACNILLQGAQKKLLSGFSQTSVLPHTGFV------Y-YSSLVQDY---PA 1433
+ K+ N + ++ ++ + Y YS + +
Sbjct: 429 PSIYLELKVKLEN--EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNI 484
Query: 1434 DMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDK 1493
+ + + D R ++ A A + + + D + K ++
Sbjct: 485 EHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 1494 L 1494
L
Sbjct: 544 L 544
Score = 37.1 bits (85), Expect = 0.056
Identities = 71/578 (12%), Positives = 149/578 (25%), Gaps = 193/578 (33%)
Query: 1220 ESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGN 1279
E +Y+ I+ A + + + +K E+D +++S T+R
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSKDAVSGTLRLF-- 68
Query: 1280 DLDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVYQ--ACDMAFELNQFKT 1337
+K E +Q+ + EE L Y+ + E Q
Sbjct: 69 WTLLSKQEEMVQKFV---------------------EEVLRINYKFLMSPIKTEQRQPSM 107
Query: 1338 SIFEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNI 1397
Y+E R + + V SRL + L L PA N+
Sbjct: 108 MTRMYIEQR--------DRLYNDNQVFAKYNV----SRLQPYLKLRQALLELR--PAKNV 153
Query: 1398 LLQGAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARL 1457
L+ G + G + + + A + Y
Sbjct: 154 LIDG-----VLGSGK-TWV----------------------ALDVCLSYK---------- 175
Query: 1458 VAAKCALAARV---DAAHDSVDGAI---GRSFREDIEKKLDKLTEPPPVKFVKPLPKPIE 1511
+C + ++ + + + + + I+ ++ + I
Sbjct: 176 --VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-----SNIKLRIH 228
Query: 1512 AGRKKRGGKRVRKMKERYAMTELRKQQNRLSFADIEDDAYQEDLGYSRGTIGKTGAGRIR 1571
+ + + R R +K + +N L + + ++
Sbjct: 229 SIQAE---LR-RLLKS-------KPYENCL---LVLLN--------------------VQ 254
Query: 1572 TPQVDEKTKVRISKTLQKNLQRQQVWGGSTTVKKQVSGTTSSIAFTPLQGLEI------- 1624
+ + K L +Q S +S S+ TP + +
Sbjct: 255 NAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 1625 -----------VNPQ-----AAEKSSGETGAKYFSNTAGFVRVNQTRLSSWAQVLE---- 1664
NP+ A G + + ++ SS VLE
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESSL-NVLEPAEY 371
Query: 1665 ---------FESSVA-PHLVVVVLTPWDETVIVGPGIGVREFS-------GPSSGSGSAH 1707
F S P +++ ++ W + + + V + P + S
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 1708 PMGMRSGNVLNRVGHQQDKWKRQVLEQRRNIYDKHTML 1745
+ + + N Y H +
Sbjct: 430 -------------SIYLE-----LKVKLENEYALHRSI 449
Score = 32.1 bits (72), Expect = 2.1
Identities = 33/237 (13%), Positives = 62/237 (26%), Gaps = 68/237 (28%)
Query: 1532 TELRKQQNRLSFADI-ED--DAYQEDLG------YSRGTIGKTGAGRI-RTPQVDEKTKV 1581
E + Q + DI DA+ ++ + + K I + T
Sbjct: 9 FETGEHQ--YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 1582 RISKTLQKNLQRQQVWGGSTTVKKQVSGT--------TSSIAFTPLQGLEIVNPQAAEKS 1633
L K V+K V S I Q P +
Sbjct: 67 LFWTLLSK---------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMTRM 111
Query: 1634 SGETGAKYFSNTAGFVRVNQTRLSSWAQVLEFESSVAPHLVVVVLTPWDETVIVG-PGIG 1692
E + +++ F + N +RL + ++ + + P V++ G G G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---------DGVLGSG 162
Query: 1693 --------VREFSGPSSGSGSAHPMGMRSGNV--LNRVGHQQDKWKRQVLEQRRNIY 1739
+ + LN + + VLE + +
Sbjct: 163 KTWVALDVCLSYK----------VQCKMDFKIFWLN-LKNCNS--PETVLEMLQKLL 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 82.4 bits (203), Expect = 1e-15
Identities = 105/648 (16%), Positives = 197/648 (30%), Gaps = 204/648 (31%)
Query: 1007 GIYTAPFSESHSGWVQLANIDLP--VFRFNMS-LADELLADMRLLQCCSETHGSRNHREE 1063
T P + SH G ++ + +P F F S L ++ L +E + + E
Sbjct: 3 AYSTRPLTLSH-GSLEHV-LLVPTASF-FIASQLQEQFNKI---LPEPTEGFAADD--EP 54
Query: 1064 STVSQKPMDLETIGKKAQSHKYHSRY-EFLADIELILSNSVLYNGPGSQVLINIWWHFIE 1122
+T P +L ++ +++ L+ + V G QVL F
Sbjct: 55 TT----PAEL------------VGKFLGYVSS--LVEPSKV---GQFDQVLNLCLTEF-- 91
Query: 1123 IKSSF-KTNNVQILSGGFHSLCGSSRSIEPNTRQSRNVWHGSGNLKTLTSTLFYFVFQAK 1181
++ + + N++ H+L T +K Y A+
Sbjct: 92 -ENCYLEGNDI-------HALAAKLLQENDTTLVKTKEL-----IKN------YI--TAR 130
Query: 1182 SI--HQIAKLRNSEQLQNVMT-------------SIEKY----QKSNQSQAPIVGPVESD 1222
+ K NS + V + + Y + Q+ +VG
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD---- 186
Query: 1223 PEYQLIVEANNL-----AVEIDTEIGLIHRFAVE---KYNKRFPELDTLV---VS-PL-- 1268
LI + +D E + + P+ D L+ +S PL
Sbjct: 187 ----LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 1269 -----EYLRTVRELGNDLDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVY 1323
Y+ T + LG + L+ + +V +V + T S E +
Sbjct: 243 VIQLAHYVVTAKLLG--FTPGELRSYLKGATGHSQGLVTAVAIAETD----SWESF---F 293
Query: 1324 QACDMAFELNQFKTSIFEYVESRMTYIAPNLS---AIV------GASTAAKMMGVAGGLS 1374
+ A + +F ++ R PN S +I+ + M+ ++ L+
Sbjct: 294 VSVRKAITV------LF-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-LT 345
Query: 1375 RL----------SKMPG----------------VAG------GL-SRLSKMPACNILLQG 1401
+ S +P V+G GL L K A + L Q
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 1402 AQKKLLSGFSQTSVLPHTGFV-----YYSSLVQDYPADMRRKAARLVQDYPADMRRKAAR 1456
FS+ + F+ ++S L+ A+ L+ D+ +
Sbjct: 406 RIP-----FSERKLKFSNRFLPVASPFHSHLLVP--------ASDLINK---DLVKNNVS 449
Query: 1457 LVAAKCALAARVDAAHDSVDGAIGRSFREDIEKKL-DKLTEPPPVKFVKPLPKPIE---- 1511
A + V +D+ DG+ R I +++ D + PVK+
Sbjct: 450 FNAKDIQIP--V---YDTFDGSDLRVLSGSISERIVDCIIR-LPVKWETTTQFKATHILD 503
Query: 1512 --AGRKKRGGKRVRKMKERYAMTELRKQQNRLSFADIEDDAYQEDLGY 1557
G G + K+ + R+ A D +D G+
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGV--------RVIVAGTLDINPDDDYGF 543
Score = 66.6 bits (162), Expect = 8e-11
Identities = 123/700 (17%), Positives = 201/700 (28%), Gaps = 279/700 (39%)
Query: 1145 SSRSIEPNTRQSRNVWHGSGNLKTLTSTLFYFVFQAKSIHQIAKLRNSEQLQNVMTSIEK 1204
S+R + + HGS L T +F + QLQ E+
Sbjct: 5 STRPL--------TLSHGSLEHVLLVPTASFF--------------IASQLQ------EQ 36
Query: 1205 YQKSNQSQAPIVGPVESDPEYQLIVEANNLAVEIDTEIGLIHRF------AVEKYN-KRF 1257
+ K P G D E T L+ +F VE +F
Sbjct: 37 FNKI--LPEPTEGFAADD--------------EPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 1258 PELDTLVVSPLE--YLRTVRELGNDL---------DQTKNNETLQQVLTQATIMVVSVTA 1306
++ L ++ E YL GND+ + ++++ +TA
Sbjct: 81 DQVLNLCLTEFENCYLE-----GNDIHALAAKLLQENDTTLVKTKELIKNY------ITA 129
Query: 1307 STTQGQLLSEEELSEVYQACDMAFELNQFKT-SIF-------EYV-ESRM---TYIAPNL 1354
+ ++ S +++A + +IF +Y E R TY +
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGE----GNAQLVAIFGGQGNTDDYFEELRDLYQTY-HVLV 184
Query: 1355 SAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNIL--LQGAQKK-----LL 1407
++ +A+ LS L + A + ++ NIL L+ LL
Sbjct: 185 GDLI--KFSAET------LSELIRTTLDAEKV--FTQ--GLNILEWLENPSNTPDKDYLL 232
Query: 1408 S-GFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRK-------AARLVA 1459
S S P G + L Y A+L+ P ++R + LV
Sbjct: 233 SIPIS----CPLIGVI---QLAH-YVV-----TAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 1460 AKC-ALAARVDAAHDSVDGA------IG-RSFREDIEKKLDKLTEPPPVKFVKP--LPKP 1509
A A ++ SV A IG R E P + P L
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRC------------YEAYPNTSLPPSILEDS 327
Query: 1510 IEAGRKKRGGKRVRKMKERYAMTELRKQQNRLSFADIEDDAYQEDLGYSRGTIGKTGAGR 1569
+E M LS +++ + Q+ + KT +
Sbjct: 328 LENNEGVPS-----------PM---------LSISNLTQEQVQDY-------VNKTNS-- 358
Query: 1570 IRTPQVDEKTKVRISKTLQKNLQRQQVWGGSTTVKKQVSGTTSSIAFTPLQGLEIVNPQA 1629
+ +V IS L N + V VSG S L GL +
Sbjct: 359 ----HLPAGKQVEIS--L-VNGAKNLV----------VSGPPQS-----LYGLNL----T 392
Query: 1630 AEKSSGETG-----AKY------FSN-----TAGF--------------------VRVNQ 1653
K+ +G + FSN + F V N
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 1654 TRL-------SSWAQVLEFESSVAPHLVVVVLT-P--WDETV------IV--GPGIGVRE 1695
+ + + S++ +V ++ P W+ T I+ GPG G
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG-GA-- 509
Query: 1696 FSGPSS-------GSG----SAHPMGMRSGNVLNRVGHQQ 1724
SG G+G A G N + G +Q
Sbjct: 510 -SGLGVLTHRNKDGTGVRVIVA---GTLDINPDDDYGFKQ 545
Score = 64.3 bits (156), Expect = 4e-10
Identities = 106/610 (17%), Positives = 178/610 (29%), Gaps = 209/610 (34%)
Query: 234 TSPTPLDL-YG------LISEEETCVYPQGRDLFMTS---NTPNTIRQDKTLNK--LKIK 281
S PL L +G L+ + Q ++ F T D+ L K
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 282 FLKPCEEKPNANSPFSSNQMDPNALN-----ITIILAEFSRS------IEHSVTLMIRLL 330
FL + S+ ++P+ + + + L EF I H++
Sbjct: 64 FLG-----------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAA----- 106
Query: 331 RQEILPAPDSPPRSSTP--SNMFHSKHRSDSSLTPKRKYKSKPDLKVKCGACGLVGHMRT 388
++L D+ + N ++ + +K S L +
Sbjct: 107 --KLLQENDTTLVKTKELIKNYITARIMAKRPFD--KKSNSA-----------LFRAVGE 151
Query: 389 NKACPQYSL-TGQMPMNVAMTEEQEEEYGKVIDCDEEALVNVEGTKVTLSGKLIKHAEEV 447
A ++ GQ G D EE L ++ T L G LIK + E
Sbjct: 152 GNA-QLVAIFGGQ---------------GNTDDYFEE-LRDLYQTYHVLVGDLIKFSAE- 193
Query: 448 KRKSLLLKVPKEALHAKKKRKANNPDNQLDYLKRHQKPANRRRTDPVVVLTSILEKILNE 507
L ++ + L A+K L+ L+ + P+N D L SI
Sbjct: 194 ----TLSELIRTTLDAEKVFTQG-----LNILEWLENPSNTPDKD---YLLSI------- 234
Query: 508 MRDMSQTEPNVKQFSFPVNA--KLVPDYYKIVTRPMDLQT--IRENLRSK---------- 553
P S P+ +L +Y + + + +R L+
Sbjct: 235 --------P----ISCPLIGVIQLA--HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 554 ----KYQSREEFLADVNQIVENSTLYNGAKS------------ILTDAARR-------ML 590
+ S E F V + + + G + IL D+ ML
Sbjct: 281 VAIAETDSWESFFVSVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 591 TLCVELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNK 650
+ L +E++ + K N L QV +S L N A +
Sbjct: 340 --SISNL-TQEQVQDYVNKT-NSHLPAGKQVEIS----------LVNGAKN--LV----- 378
Query: 651 KFFKDYYSVVQKPMDLETI-----GKKAQSHKYHSRYEFLADIELILSNSVL-------- 697
V P L + KA S SR F ++ +L SN L
Sbjct: 379 --------VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF-SERKLKFSNRFLPVASPFHS 429
Query: 698 -YNGPGSQVTEKAEKLLEEAKLALEK-------YD----DHLTQLEKTISQVRARAMEQA 745
P ++ K L + ++ YD L L +IS+ + +
Sbjct: 430 HLLVP---ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 746 DVDSFSTWTQ 755
V W
Sbjct: 487 PVK----WET 492
Score = 55.4 bits (133), Expect = 2e-07
Identities = 105/688 (15%), Positives = 190/688 (27%), Gaps = 253/688 (36%)
Query: 748 DSFSTWTQDDDQFQSGLDKEDFEYT-DAEGNIKKENDGGLLEKDLEFSSEEERDDTISSN 806
SF +Q +QF L + + D E E L+ K L + S +
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE----LVGKFLGYVSSLVEPSKVGQF 80
Query: 807 QAWTKKILNIRMLRFQSGLDKEDFEYTDAEGN--------IKKENDGGLLEKDLEFSS-- 856
L +FE EGN + +END L++ +
Sbjct: 81 DQVLNLCLT-------------EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 857 ---------EEERDDNDMEEVVDDDSQQAAEAMVQLG----NITYYTDPNTEETSMDVDP 903
+++ ++ + V + + A+ + G Y+ EE
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGN---AQLVAIFGGQGNTDDYF-----EE------- 172
Query: 904 NYDPSEFL--LNRTEQPMVNKPSSGVMGNDGFILNPQQAMSSHDSEIKTEDDDLAVSHPC 961
L L +T +V I + + SE+ D A
Sbjct: 173 -------LRDLYQTYHVLV----------GDLI----KFSAETLSELIRTTLD-AEKV-- 208
Query: 962 FWLCSFPDGCSHNLGPISHCW-KDSLWTPRVIFWSLCMSIDSYLCLGIYTAPFSESHSGW 1020
F G N+ W ++ TP YL + P S G
Sbjct: 209 -----FTQGL--NI----LEWLENPSNTPD----------KDYLL----SIPISCPLIGV 243
Query: 1021 VQLAN--IDLPVFRFNMSLADELLADMRLLQCCSETHGSRNHREESTVSQKPMDLETIGK 1078
+QLA+ + + F ++R + H + V+
Sbjct: 244 IQLAHYVVTAKLLGFTP-------GELRSYLKGATGHS------QGLVT----------- 279
Query: 1079 KAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVLINIWWHFIEIKSSFKTNNVQILSGG 1138
A +A ++S W SF + + ++
Sbjct: 280 -AV---------AIA-----ETDS--------------W-------ESFFVSVRKAITVL 303
Query: 1139 FHSLCG-------SSRSIEPNTRQSRNVWHGSG-----------NLKTLTSTLFYF---V 1177
F G + S+ P+ + ++ + G + + + +
Sbjct: 304 FF--IGVRCYEAYPNTSLPPSILED-SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 1178 FQAKSIHQIAKLRNSEQLQNVMTSIEKYQKSNQSQAPIVGPVESDPEYQLIVEANNLAVE 1237
K + I+ L N + V++ GP +S Y L +
Sbjct: 361 PAGKQVE-IS-LVNGAK-NLVVS----------------GPPQS--LYGLNLTLRKAKAP 399
Query: 1238 IDTEIGLIHRFAVEKYNKRFPELDT--LVVS-PL--EYLRTVRELGNDLDQTKNNETLQQ 1292
+ I +++R + L V+ P L +L N D KNN +
Sbjct: 400 SGLDQSRI------PFSERKLKFSNRFLPVASPFHSHLLVPASDLINK-DLVKNNVSFNA 452
Query: 1293 VLTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELN-QFKTSIFEYVESRMTYIA 1351
I V T G L S + D L +++T+ + + T+I
Sbjct: 453 --KDIQIPVY----DTFDGSDLRVLSGSISERIVDCIIRLPVKWETT----TQFKATHI- 501
Query: 1352 PNLSAIVGASTAAKMMGVAGGLSRLSKM 1379
+ G GG S L +
Sbjct: 502 -----LD--------FG-PGGASGLGVL 515
Score = 47.0 bits (111), Expect = 6e-05
Identities = 46/309 (14%), Positives = 87/309 (28%), Gaps = 105/309 (33%)
Query: 489 RRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLV---PDYYKIVTRPMDLQT 545
+T + + N D + + F + +V P I +
Sbjct: 1636 YKTSKAA------QDVWNRA-DNHFKD----TYGFSI-LDIVINNPVNLTIHFGGEKGKR 1683
Query: 546 IRENLRSKKYQS-------REEFLADVNQIVENSTLY--NGAKSIL-----TDAARRMLT 591
IREN + +++ E+ ++N E+ST Y K +L T A +
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEIN---EHSTSYTFRSEKGLLSATQFTQPA--LTL 1738
Query: 592 L---CVELLGKKEELLMRLEKAINPLLDDNDQV---------AL-----SFIFDDIVNNK 634
+ E L K + L + + AL + +V +
Sbjct: 1739 MEKAAFEDL--KSKGL----------IPADATFAGHSLGEYAALASLADVMSIESLV--E 1784
Query: 635 L-----KNMADAWIFIKPVNKKFFKDYY------SVVQKPMDLETIGKKAQSHKYHSRYE 683
+ M A P ++ +Y V E + +
Sbjct: 1785 VVFYRGMTMQVA----VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE--------R 1832
Query: 684 FLADIELILS--NSVLYNGPGSQV--------TEKAEKLLEEAKLALEKYDDHLTQLEKT 733
++ N YN Q + +L K L+K D + +L+K+
Sbjct: 1833 VGKRTGWLVEIVN---YNVENQQYVAAGDLRALDTVTNVLNFIK--LQKID--IIELQKS 1885
Query: 734 ISQVRARAM 742
+S
Sbjct: 1886 LSLEEVEGH 1894
Score = 44.7 bits (105), Expect = 4e-04
Identities = 54/298 (18%), Positives = 89/298 (29%), Gaps = 116/298 (38%)
Query: 1460 AKCALAARV-DAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKPIEAGRKKRG 1518
A V + A + G S + + LT + F G
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT----IHF---------------G 1677
Query: 1519 GKRVRKMKERY-AMTELRKQQNRLSFADIEDDAYQEDLGYSRGTIGKTGAGRIRTPQVDE 1577
G++ ++++E Y AM F I D G+++T ++ +
Sbjct: 1678 GEKGKRIRENYSAMI----------FETIVD-------------------GKLKTEKIFK 1708
Query: 1578 KTKVRISKTLQKNLQRQQVWGGST-----TVKKQVSGTTSSIA-FTPLQ--GLEIVNPQA 1629
+ + + T Q + T A F L+ GL +
Sbjct: 1709 EINEHSTSY---------TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 1630 AEKSSGETGAKYFSNTAGFVRVNQTRLSSWAQVLEFESSVAPHLV------VVVLTPWDE 1683
A S GE Y A L+S A V+ ES V +V + V P DE
Sbjct: 1760 AGHSLGE----Y---AA---------LASLADVMSIESLV--EVVFYRGMTMQVAVPRDE 1801
Query: 1684 TVIVGPGIGVREFSGPSSGSGSA-HPMGMRSG-------NVLNRVGHQQDKWKRQVLE 1733
G S+ A +P + + V+ RVG + ++E
Sbjct: 1802 L-------------GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG----WLVE 1842
Score = 44.3 bits (104), Expect = 4e-04
Identities = 34/249 (13%), Positives = 76/249 (30%), Gaps = 61/249 (24%)
Query: 538 TRPMDLQ--TIR------ENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRM 589
TRP+ L ++ Q +E+F + + E + +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA------- 58
Query: 590 LTLCVELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVN 649
EL+ + ++ L++ + FD ++N L F
Sbjct: 59 ------------ELVGKFLGYVSSLVEPSKVGQ----FDQVLNLCLTE------F----E 92
Query: 650 KKFF--KDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTE 707
+ D +++ K + E ++ + Y A I++ S +
Sbjct: 93 NCYLEGNDIHALAAK-LLQENDTTLVKTKELIKNY-ITA---RIMAKRPFDKKSNSALFR 147
Query: 708 KAEKLLEEAKLAL--------EKYDDHLTQLEKTISQVRARAMEQAD--VDSFSTWTQDD 757
+ A+L + Y + L L +T + ++ + + T D
Sbjct: 148 AVGE--GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 758 DQ-FQSGLD 765
++ F GL+
Sbjct: 206 EKVFTQGLN 214
Score = 44.3 bits (104), Expect = 5e-04
Identities = 42/306 (13%), Positives = 86/306 (28%), Gaps = 127/306 (41%)
Query: 239 LDLYGLISEEETCVYPQGRDLF-----------------MTSNTPNT------------I 269
+DLY +D++ + N P I
Sbjct: 1633 MDLYK--------TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 270 RQDKTLNKLKIKFLKPCEEKPNANSPF------SSNQM--DPN-ALNIT------IILAE 314
R+ N + F + K F S++ L+ T + L E
Sbjct: 1685 RE----NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 315 FSRSIEHSVTLMIRLLRQE-ILPAPDSPPRSSTPSNMF--HS-------KHRSDS-SLTP 363
+ L+ + ++PA F HS +D S+
Sbjct: 1741 KA---------AFEDLKSKGLIPADA----------TFAGHSLGEYAALASLADVMSIE- 1780
Query: 364 KRKYKSKPDLKVKCGACGLVGHMR---TNKACPQ-------YSLTGQMP--MNVAMTEEQ 411
L V+ +V R A P+ Y + P + + ++E
Sbjct: 1781 --------SL-VE-----VV-FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 412 EEEYGKVIDCDEEALV-----NVEGTKVTLSG------KLIKHAEEVKRKSL-LLKVPKE 459
+ + + LV NVE + +G + +K + + ++++ +
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ-K 1884
Query: 460 ALHAKK 465
+L ++
Sbjct: 1885 SLSLEE 1890
Score = 43.1 bits (101), Expect = 0.001
Identities = 30/128 (23%), Positives = 38/128 (29%), Gaps = 48/128 (37%)
Query: 231 GPN----TSPTPLDLYGLISEEETCVYPQGRDLFMTSNTPNTIRQDKTLNKLKI--KFLK 284
G + P P LYGL P G D S P + R KLK +FL
Sbjct: 373 GAKNLVVSGP-PQSLYGLNLTLRKAKAPSGLD---QSRIPFSER------KLKFSNRFL- 421
Query: 285 PCEEKPNANSPFSSNQMDP------------------NALNITII-------LAEFSRSI 319
P SPF S+ + P + I + L S SI
Sbjct: 422 P------VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI 475
Query: 320 EHSVTLMI 327
+ I
Sbjct: 476 SERIVDCI 483
Score = 42.3 bits (99), Expect = 0.002
Identities = 46/256 (17%), Positives = 68/256 (26%), Gaps = 90/256 (35%)
Query: 1228 IVEAN--NLAVEIDTEIGLIHRFAVEKYN---------------KRFPELDTLVVSPLEY 1270
IV N NL + E G R E Y+ K F E++ E+
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIR---ENYSAMIFETIVDGKLKTEKIFKEIN-------EH 1713
Query: 1271 LRTVRELGND--LDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEEL--------- 1319
+ L T+ TQ + ++ A + L + L
Sbjct: 1714 STSYTFRSEKGLLSATQF--------TQPALTLMEKAAF----EDLKSKGLIPADATFAG 1761
Query: 1320 -S--EVYQA--CD---MAFE-----------LNQFKTSIFEYVESRMTYIAPNLSAIVGA 1360
S E Y A M+ E Q E S IA N + +
Sbjct: 1762 HSLGE-YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 1361 STAAKMMGVAGGLSRLSKM---------PG----VAGGLSRLSKMPACNIL-LQGAQK-- 1404
+ + V + + + AG L L N+L QK
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT--VTNVLNFIKLQKID 1878
Query: 1405 --KLLSGFSQTSVLPH 1418
+L S V H
Sbjct: 1879 IIELQKSLSLEEVEGH 1894
Score = 42.3 bits (99), Expect = 0.002
Identities = 51/381 (13%), Positives = 95/381 (24%), Gaps = 167/381 (43%)
Query: 789 KDLEFSSEEERDDTISSNQAWTKKILNIRMLRFQSGLDKEDFEYTDAEG----NIKKEND 844
DL +S+ +D W ++ D + D G +I N
Sbjct: 1633 MDLYKTSKAAQD-------VW----------------NRADNHFKDTYGFSILDIVINNP 1669
Query: 845 GGLLEKDLEFSSEEERD--DNDME---EVVDDDSQQAAEAMVQLG-NITYYTDPNTEETS 898
+ F E+ + +N E + D + + ++ + T YT
Sbjct: 1670 V---NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT-------- 1718
Query: 899 MDVDPNYDPSEFLLNRTE--QPMVNKPSSGVMGNDGFILNPQQAMSSHDSEIKTEDDDLA 956
+ + LL+ T+ QP A+
Sbjct: 1719 ------FRSEKGLLSATQFTQP---------------------AL-------------TL 1738
Query: 957 VSHPCFWLCSFPDGCSHNLGPISHCWKDSLWTPRVIFWSLCMSIDSYLC---LGIYTAPF 1013
+ F K P D+ LG Y A
Sbjct: 1739 MEKAAF-----------------EDLKSKGLIPA----------DATFAGHSLGEYAA-- 1769
Query: 1014 SESHSGWVQLANIDLPVFRFNMSLAD--ELLADMR--LLQCCSETHGSRNHREESTVSQK 1069
LA++ MS+ E++ R +Q R+E S
Sbjct: 1770 ------LASLADV--------MSIESLVEVVF-YRGMTMQVAVP-------RDELGRSNY 1807
Query: 1070 PM---DLETIGKKAQSHKYHSRYEFLADI-ELIL--SNSVL----YNGPGSQVLI----- 1114
M + + E L + E + + ++ YN Q +
Sbjct: 1808 GMIAINPGRVAASFSQ-------EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
Query: 1115 NIWWHFIEIKSSFKTNNVQIL 1135
+ + + K + I+
Sbjct: 1861 AL-DTVTNVLNFIKLQKIDII 1880
Score = 34.6 bits (79), Expect = 0.38
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 20/123 (16%)
Query: 39 DVHKIIEQDIKGVRCRLAAKCALAARVDAAHDSVDGAIGRSFREDIEKKL-DKLTEPPPV 97
+I +D+ AK + V +D+ DG+ R I +++ D + PV
Sbjct: 434 PASDLINKDLVKNNVSFNAK-DIQIPV---YDTFDGSDLRVLSGSISERIVDCIIR-LPV 488
Query: 98 KFVKPLPKPIE------AGRKKRGGKRVRKMKERYAMTELRKQQNRLSFADIEDDAYQED 151
K+ G G + K+ + R+ A D +D
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV--------RVIVAGTLDINPDDD 540
Query: 152 LGY 154
G+
Sbjct: 541 YGF 543
Score = 34.3 bits (78), Expect = 0.45
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 25/114 (21%)
Query: 55 LAAKCALAARV-DAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKPIEAGRKK 113
L A V + A + G S + + LT + F
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT----IHF-------------- 1676
Query: 114 RGGKRVRKMKERY-AMTELRKQQNRLSFADIEDDAYQEDLGYS----RGTIGKT 162
GG++ ++++E Y AM +L I + + Y+ +G + T
Sbjct: 1677 -GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 75.3 bits (184), Expect = 4e-15
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKK---AQSHKYHSRYEFLADIE 689
L + F +PV +YY +++KPMDL T+ KK S Y +F+AD+
Sbjct: 91 LYLYCHELSIEFQEPVPASI-PNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVR 149
Query: 690 LILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKY 723
LI N +N V A+ K E
Sbjct: 150 LIFKNCERFNEMMKVVQVYADTQEINLKADSEVA 183
Score = 64.9 bits (157), Expect = 1e-11
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 516 PNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSK---KYQSREEFLADVNQIVENS 572
+F PV +P+YYKI+ +PMDL T+++ L+ K YQ ++F+ADV I +N
Sbjct: 97 ELSIEFQEPVP-ASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNC 155
Query: 573 TLYNGAKSILTDAARRM 589
+N ++ A
Sbjct: 156 ERFNEMMKVVQVYADTQ 172
Score = 49.5 bits (117), Expect = 2e-06
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 1064 STVSQKPMDLETIGKK---AQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ +KPMDL T+ KK S Y +F+AD+ LI N +N V
Sbjct: 114 YKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVV 165
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Length = 147
Score = 71.1 bits (174), Expect = 3e-14
Identities = 17/117 (14%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 620 QVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYH 679
Q + +F +++++ + + + + D + P+ + I K ++++Y
Sbjct: 9 QELIHNLFVSVMSHQ---DDEGRCYSDSLAEIPAVDPNFPNKPPLTFDIIRKNVENNRYR 65
Query: 680 SRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTISQ 736
F + +L + N S++ E A +L + ++ D+ E +S
Sbjct: 66 RLDLFQEHMFEVLERARRMNRTDSEIYEDAVEL---QQFFIKIRDELCKNGEILLSP 119
Score = 68.4 bits (167), Expect = 2e-13
Identities = 19/119 (15%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ 556
+ ++ + + MS + + +S + D P+ IR+N+ + +Y+
Sbjct: 8 IQELIHNLFVSV--MSHQDDEGRCYSDSLAEIPAVDPNFPNKPPLTFDIIRKNVENNRYR 65
Query: 557 SREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELLMRLEKAINPLL 615
+ F + +++E + N S + + A + ++ ++EL E ++P L
Sbjct: 66 RLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIK---IRDELCKNGEILLSPAL 121
Score = 58.4 bits (141), Expect = 6e-10
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 1068 QKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ P+ + I K ++++Y F + +L + N S++
Sbjct: 47 KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEI 91
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 63.1 bits (152), Expect = 4e-11
Identities = 12/81 (14%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 520 QFSFPVNAKLVPDYYKI-VTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGA 578
+ +N++ + +P+DL+ ++ + Y S EF D+ +I++ + +G
Sbjct: 83 VLTALLNSRTTSHLLRYRQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGG 142
Query: 579 KSILTDAARRMLTLCVELLGK 599
+ + A + + + + +
Sbjct: 143 QPEIKKANSMVKSFFIRQMER 163
Score = 62.7 bits (151), Expect = 4e-11
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 632 NNKLKNMADAWIFIKPVNKKFFKDYYSVVQK-PMDLETIGKKAQSHKYHSRYEFLADIEL 690
K ++ + +N + Q+ P+DLE + +K Y S EF DI
Sbjct: 72 LEKELQISLKQVLTALLNSRTTSHLLRYRQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVK 131
Query: 691 ILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKY 723
I+ ++ +G ++ + + +E+
Sbjct: 132 IIQAAINSDGGQPEIKKANSMVKSFFIRQMERV 164
Score = 55.0 bits (131), Expect = 2e-08
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 1067 SQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
Q+P+DLE + +K Y S EF DI I+ ++ +G ++
Sbjct: 101 QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEI 146
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 61.0 bits (147), Expect = 2e-10
Identities = 20/129 (15%), Positives = 31/129 (24%), Gaps = 7/129 (5%)
Query: 592 LCVELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKK 651
LC L KEE + + + V L +
Sbjct: 45 LCHVLPDLKEEDGSLSLDGADSTGVVAKLSPANQRKCERVLLALFCHEPCRPLHQLATDS 104
Query: 652 FFKDYYSVVQKPMDLETIGKKAQ---SHKYHSRYEFLADIELILSNSVLYNGPGSQVT-- 706
+DL I + Q S Y S EF D+ + + V
Sbjct: 105 --TFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADVQSI 162
Query: 707 EKAEKLLEE 715
++ E
Sbjct: 163 IGLQRFFET 171
Score = 54.5 bits (130), Expect = 3e-08
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 6/90 (6%)
Query: 513 QTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSK---KYQSREEFLADVNQIV 569
+ +DL IR L+ K Y S +EF DV ++
Sbjct: 89 FCHEPCRPLHQLATD--STFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMF 146
Query: 570 ENSTLYNGAKSILTDAARRMLTLCVELLGK 599
+ K+ + + + +
Sbjct: 147 KQFNKLTEDKAD-VQSIIGLQRFFETRMNE 175
Score = 48.3 bits (114), Expect = 4e-06
Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 1001 DSYLCLGIYTAPFSESHSGWVQLANIDLPVFRFNMSLADELLADMRLLQCCSETHGS--- 1057
+ + C + P + G + L D +S A++ + LL
Sbjct: 39 EEWSCSLCHVLPDLKEEDGSLSLDGADSTGVVAKLSPANQRKCERVLLALFCHEPCRPLH 98
Query: 1058 ---RNHREESTVSQKPMDLETIGKKAQ---SHKYHSRYEFLADIELILSNSVLYNGPGSQ 1111
+ +DL I + Q S Y S EF D+ + +
Sbjct: 99 QLATDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKAD 158
Query: 1112 V 1112
V
Sbjct: 159 V 159
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 40.1 bits (93), Expect = 0.002
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 707 EKAEKLLEEAKLALEK-YDDHLTQLEKTISQVRARA---MEQADVD 748
++ E+AK LE+ Q+EK R +Q D D
Sbjct: 107 VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 36.3 bits (83), Expect = 0.042
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 27/97 (27%)
Query: 707 EKAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQADVDSFSTWTQDDDQFQSGLDK 766
E K EE + L++ D + + R +A + D++ + + +Q ++K
Sbjct: 85 ESIRKWREEQRKRLQELDA---ASKVMEQEWREKA--KKDLEEW--NQRQSEQ----VEK 133
Query: 767 EDFEYTDAEGNIKKENDGGLLEKDLEFSSEEERDDTI 803
K N D F + + D I
Sbjct: 134 N-----------KINN----RIADKAFYQQPD-ADII 154
Score = 30.5 bits (68), Expect = 3.6
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 19/93 (20%)
Query: 60 ALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKPIEAGRKKRGGKRV 119
A A R+ +S+ R +RE+ K+L +L V E +++ K +
Sbjct: 75 AQADRLTQEPESI-----RKWREEQRKRLQELDAASKVM---------EQEWREKAKKDL 120
Query: 120 RKMKERYA-MTELRKQQNRLS---F-ADIEDDA 147
+ +R + E K NR++ F + D
Sbjct: 121 EEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 30.5 bits (68), Expect = 3.6
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 19/93 (20%)
Query: 1463 ALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKPIEAGRKKRGGKRV 1522
A A R+ +S+ R +RE+ K+L +L V E +++ K +
Sbjct: 75 AQADRLTQEPESI-----RKWREEQRKRLQELDAASKVM---------EQEWREKAKKDL 120
Query: 1523 RKMKERYA-MTELRKQQNRLS---F-ADIEDDA 1550
+ +R + E K NR++ F + D
Sbjct: 121 EEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.00A {Bacillus subtilis}
Length = 104
Score = 31.4 bits (71), Expect = 0.67
Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 778 IKKENDGGLLEKDLEFSSEEERDDTISSNQAWTKKILNIRMLRFQS-GLDKEDFEYTDAE 836
+ ++ + +E ++ ++D + + + K L ++ R + GLD +
Sbjct: 1 MNRDQEKIQIENEMNAMHGTIKEDILKDFEEF-KGYLKKQVNRGKKLGLDDGKLVKS--- 56
Query: 837 GNIKKENDGGLLEKDLEFSSEEERDDNDMEEVVDDDSQQA-AEAMVQL 883
G L K E + EE ++ V D+D ++ A+ +V+L
Sbjct: 57 ----AAILGDYLAKHEEPQNGEEMLLQELWSVADEDEKEHLAQLLVKL 100
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 33.4 bits (76), Expect = 0.77
Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 10/132 (7%)
Query: 1428 VQDYPADMRRKAARLVQDYPADMRRKAARLVAAKCALAARVDAAHDSVDGAIGRSFREDI 1487
V+ D + L++ D R+ A A ++ + S +
Sbjct: 232 VKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWID-KISAWAEEETNSYQLPESLEKFS 290
Query: 1488 EKKLDKLTEPPPVKFVKPLPKPIEAGRKKRGGKR-------VRKMKERYAMTELRKQQNR 1540
++ L+ T+ PL + I+ + R + +++E A ++++
Sbjct: 291 QRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVA--REKRRRGE 348
Query: 1541 LSFADIEDDAYQ 1552
L F D+
Sbjct: 349 LGFDDMLSRLDS 360
Score = 31.8 bits (72), Expect = 2.7
Identities = 16/153 (10%), Positives = 41/153 (26%), Gaps = 10/153 (6%)
Query: 4 ADELLADMEDEEEDNEGGEEMAADGMETEPDDVKPDVHKIIEQDIKGVRCRLAAKCALAA 63
+ + ++ + K R A
Sbjct: 211 PPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWID-KI 269
Query: 64 RVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKPIEAGRKKRGGKR----- 118
A ++ + S + ++ L+ T+ PL + I+ + R
Sbjct: 270 SAWAEEETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVIT 329
Query: 119 --VRKMKERYAMTELRKQQNRLSFADIEDDAYQ 149
+ +++E A ++++ L F D+
Sbjct: 330 RALAEIRETVA--REKRRRGELGFDDMLSRLDS 360
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 1.3
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 17/45 (37%)
Query: 1193 EQLQNVMTSIEKYQKSNQSQAPIVGPVESDPEYQLIVEANNLAVE 1237
+ L+ + S++ Y A +S P L ++A +E
Sbjct: 20 QALKKLQASLKLY-------AD-----DSAP--ALAIKA---TME 47
Score = 31.1 bits (69), Expect = 1.5
Identities = 6/20 (30%), Positives = 8/20 (40%), Gaps = 8/20 (40%)
Query: 331 RQEI--------LPAPDSPP 342
+Q + L A DS P
Sbjct: 19 KQALKKLQASLKLYADDSAP 38
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 32.1 bits (73), Expect = 2.0
Identities = 50/356 (14%), Positives = 100/356 (28%), Gaps = 24/356 (6%)
Query: 533 YYK--IVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRML 590
Y+ IV P + ++ + EE+ E L G +++ D +
Sbjct: 128 YFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVK 187
Query: 591 ---TLCVELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKP 647
+ L R + + ++ L V + + P
Sbjct: 188 GQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKE-AYKPGEILAELP 246
Query: 648 VNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQVTE 707
F + VV+ E + + + G V E
Sbjct: 247 EPYLFRAEEEGVVELKELEEGAFLVLRRE------DEPVATYFLPVGMTPLVVHGEIV-E 299
Query: 708 KAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQADVDSFSTWTQDDDQFQSGLDKE 767
K + L E L Q+E + F WT+ D
Sbjct: 300 KGQPLAEAKGLLRMPRQVRAAQVEAEEEGETVY------LTLFLEWTEPKDYRVQ----P 349
Query: 768 DFEYTDAEGNIKKENDGGLLEKDLEFSSEEERDDTISSNQAWTKKILNIRMLRFQSGLDK 827
EG + D + D E E + + ++ + ++ R+ F+ ++
Sbjct: 350 HMNVVVPEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYPFEDDVEV 409
Query: 828 EDFEYTDAEGNIKKENDGGLLEKDLEFSSEEERDDNDMEEVVDDDSQQAAEAMVQL 883
+ G++ + + + R+ + E D D++ AEA+ QL
Sbjct: 410 STGDRVA-PGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQL 464
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 30.3 bits (69), Expect = 3.7
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 682 YEFLADIELILSN-SVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTISQVRAR 740
E + ++E +L S + +++ + E+ EE K K I ++++
Sbjct: 6 IEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWK-----------DQRKEIERLKSV 54
Query: 741 -AMEQAD 746
A AD
Sbjct: 55 IADLWAD 61
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural
genomics, COG294 protein structure initiative; NMR
{Rhodopseudomonas palustris} SCOP: b.122.1.8
Length = 145
Score = 29.4 bits (66), Expect = 4.9
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 97 VKFVKPLPKPIEAGRKKRGGKRVRKMKERYAMTELRKQQNRLS 139
+K KPL P+ V+ M ++ +RLS
Sbjct: 86 IKADKPLKTPVTL-------AAVKAEPRLADMALMK--YSRLS 119
Score = 29.4 bits (66), Expect = 4.9
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 1500 VKFVKPLPKPIEAGRKKRGGKRVRKMKERYAMTELRKQQNRLS 1542
+K KPL P+ V+ M ++ +RLS
Sbjct: 86 IKADKPLKTPVTL-------AAVKAEPRLADMALMK--YSRLS 119
>3iu0_A Protein-glutamine gamma-glutamyltransferase; mtgase, zymogen,
Pro-enzyme,cross-linking, acyltransferase; 1.90A
{Streptomyces mobaraensis} PDB: 1iu4_A
Length = 382
Score = 30.6 bits (68), Expect = 5.4
Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 49/190 (25%)
Query: 93 EPPPVKFVKPLPKPIEAGRKKRGGKR-------VRKMKERYAMTELRKQQ---------- 135
PP + + +P P G+ +RK ++ Y+ + RKQQ
Sbjct: 51 VTPPAEPLDRMPDPYRP----SYGRAETVVNNYIRKWQQVYSHRDGRKQQMTEEQREWLS 106
Query: 136 ----------------NRLSFADIEDDAYQEDLGYSRGTIGKTGA---GRIRTPQVDE-- 174
NRL+FA ++D ++ +L R G+T A GR+ DE
Sbjct: 107 YGCVGVTWVNSGQYPTNRLAFASFDEDRFKNELKNGRPRSGETRAEFEGRVAKESFDEEK 166
Query: 175 --KTKVRISKTLQKNLQRQQVWGGS-TTVKKQVSGTTSSI----AFTPLQLTLRRQKSRP 227
+ ++ + + L+ +KK+++ ++ A +P LR S
Sbjct: 167 GFQRAREVASVMNRALENAHDESAYLDNLKKELANGNDALRNEDARSPFYSALRNTPSFK 226
Query: 228 EKLGPNTSPT 237
E+ G N P+
Sbjct: 227 ERNGGNHDPS 236
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 28.3 bits (63), Expect = 6.5
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 707 EKAEKLLEEAKLALEKYDDHLTQLEKTISQVRARAMEQADVDSFSTWTQDDDQFQSGLDK 766
E+AE + A+ ++ +D + QLEK + + D + L
Sbjct: 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVT------EDSRDQVLEELHKS---EDSLLF 76
Query: 767 EDFEYTDAEGNI 778
+ AE +
Sbjct: 77 AEENAAKAESEV 88
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA
binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Length = 1308
Score = 30.7 bits (68), Expect = 6.9
Identities = 45/259 (17%), Positives = 83/259 (32%), Gaps = 35/259 (13%)
Query: 487 NRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTI 546
+ PV +L + + I ++ D+ Q K F V
Sbjct: 1032 HVLYKSPVTLLRDLSQDIHGQLGDIDQDVEIEKTDHFAVV-------------------- 1071
Query: 547 RENLRSKKYQSREEFLADVNQIVENST-LYNGAKSILTDAARRMLTLCVELLGKKEELLM 605
NLR+ L+ +++E L K + + +
Sbjct: 1072 --NLRTAAPTVCLLVLSQAEKVLEEVDWLIAKIKGSANQETLSDKVTPEDASSQAVPPTL 1129
Query: 606 RLEKAINPLLDDNDQVALSFIFDDI-----VNNKLKNMADAWIFIKPVNKKFFKDYYSVV 660
+EKAI L + + V+ LK ++ + + K + + S
Sbjct: 1130 LIEKAIVMQLGTLVTFFHELVQTALPSGSCVDTLLKGLSKIYSTLTAFVKYYLQVCQSSR 1189
Query: 661 QKPMDLETIGKKAQSHKYHSRYEFLADIE-LILSNSVLYNGPGSQVTEKAEKLLEEAKL- 718
P +E + K + SH Y F++ ++ + V+ K+L E K
Sbjct: 1190 GIPNTVEKLVKLSGSHLTPVCYSFISYVQNKSSDAPKCSEKEKAAVSTTMAKVLRETKPI 1249
Query: 719 -----ALEKYDDHLTQLEK 732
A+E+Y+ L QL K
Sbjct: 1250 PNLVFAIEQYEKFLIQLSK 1268
>2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer
complex, transferase-replicat complex; HET: DNA; 3.00A
{Bacillus phage PHI29} SCOP: a.263.1.1
Length = 230
Score = 29.8 bits (66), Expect = 7.5
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 793 FSSEEERDDTISSNQAWTKKILNIRMLRFQSGLDKEDFEYTDAEGNIKKENDGGLLEKDL 852
F+S + D+ I KKI + + FE D+EGN EN G + K L
Sbjct: 158 FNSFDAADELIEE----LKKIPPDDFYELFLRISEISFEEFDSEGNT-VENVEGNVYKIL 212
Query: 853 EFSSEEERDDNDME 866
+ + R D D+
Sbjct: 213 SYLEQYRRGDFDLS 226
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.372
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 26,067,036
Number of extensions: 1629017
Number of successful extensions: 3222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3125
Number of HSP's successfully gapped: 191
Length of query: 1746
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1639
Effective length of database: 3,714,246
Effective search space: 6087649194
Effective search space used: 6087649194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (28.5 bits)