RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11166
(1746 letters)
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein
Prp31 {Human (Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 282 bits (723), Expect = 4e-87
Identities = 168/277 (60%), Positives = 209/277 (75%), Gaps = 28/277 (10%)
Query: 1220 ESDPEYQLIVEANNLAVEIDTEIGLIHRFAVEKYNKRFPELDTLVVSPLEYLRTVRELGN 1279
E+ PEY++IV+ANNL VEI+ E+ +IH+F +KY+KRFPEL++LV + L+Y+RTV+ELGN
Sbjct: 1 EAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGN 60
Query: 1280 DLDQTKNNETLQQVLTQATIMVVSVTASTTQGQLLSEEELSEVYQACDMAFELNQFKTSI 1339
LD+ KNNE LQQ+LT ATIMVVSVTASTTQGQ LSEEEL + +ACDMA ELN K I
Sbjct: 61 SLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRI 120
Query: 1340 FEYVESRMTYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILL 1399
+EYVESRM++IAPNLS I+GASTAAK+M GVAGGL+ LSKMPACNI+L
Sbjct: 121 YEYVESRMSFIAPNLSIIIGASTAAKIM-------------GVAGGLTNLSKMPACNIML 167
Query: 1400 QGAQKKLLSGFSQTSVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVA 1459
GAQ+K LSGFS TSVLPHTG++Y+S +VQ P D+RRKAARLVA
Sbjct: 168 LGAQRKTLSGFSSTSVLPHTGYIYHSDIVQ--------SL-------PPDLRRKAARLVA 212
Query: 1460 AKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTE 1496
AKC LAARVD+ H+S +G +G +++IE+K DK E
Sbjct: 213 AKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE 249
Score = 62.1 bits (151), Expect = 7e-11
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 46 QDIKGVRCR-LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKLTE 93
D++ R +AAKC LAARVD+ H+S +G +G +++IE+K DK E
Sbjct: 201 PDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE 249
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId:
2234]}
Length = 256
Score = 152 bits (386), Expect = 8e-42
Identities = 56/272 (20%), Positives = 100/272 (36%), Gaps = 61/272 (22%)
Query: 1252 KYNKRFPELDTLVVSPLEYLRTVRELGNDLDQTKNNETLQQVLTQATIMVVSVTASTTQG 1311
K ++ F E +P V E+G L++ + +V
Sbjct: 16 KLSENFEESFLKAENPSPLPFNVSEVGAKALGKDYYRILRKTALAVSEKMVEKELRREDR 75
Query: 1312 QL---------------LSEEELSEVYQA---------CDMAFELNQFKTSIFEYVESRM 1347
+ + E+L ++ EL + + + +E M
Sbjct: 76 YVVALVKALEEIDESINMLNEKLEDIRAVKESEITEKFEKKIRELRELRRDVEREIEEVM 135
Query: 1348 TYIAPNLSAIVGASTAAKMMGVAGGLSRLSKMPGVAGGLSRLSKMPACNILLQGAQKKLL 1407
IAPN++ +VGA AAK++ AG + R L ++PA I + GA+K L
Sbjct: 136 EKIAPNMTELVGAKVAAKLLERAGSMER-------------LVRLPASKIQVIGAEKSLY 182
Query: 1408 SGFSQT-----SVLPHTGFVYYSSLVQDYPADMRRKAARLVQDYPADMRRKAARLVAAKC 1462
F++ + +P G ++ ++ P R K AR +AAK
Sbjct: 183 KAFARMKKGKKAKIPKHGIIFLHPFIR--------TL-------PKAKRGKMARFLAAKL 227
Query: 1463 ALAARVDAAHDSVDGAIGRSFREDIEKKLDKL 1494
A+AA++D +D S E I ++ ++L
Sbjct: 228 AIAAKIDYFRGEIDE----SLYESIRRRYEEL 255
Score = 47.5 bits (113), Expect = 5e-06
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 55 LAAKCALAARVDAAHDSVDGAIGRSFREDIEKKLDKL 91
LAAK A+AA++D +D S E I ++ ++L
Sbjct: 223 LAAKLAIAAKIDYFRGEIDE----SLYESIRRRYEEL 255
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 145 bits (366), Expect = 8e-41
Identities = 81/137 (59%), Positives = 98/137 (71%), Gaps = 4/137 (2%)
Query: 477 DYLKRHQKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKI 536
DYL R K +RRRTDP+V L+SILE I+N+MRD+ T P F PVNAK+V DYYKI
Sbjct: 7 DYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNTYP----FHTPVNAKVVKDYYKI 62
Query: 537 VTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVEL 596
+TRPMDLQT+REN+R + Y SREEF + IV+NS YNG K LT ++ ML LC E
Sbjct: 63 ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEK 122
Query: 597 LGKKEELLMRLEKAINP 613
L +KE+ L RLEKAINP
Sbjct: 123 LKEKEDKLARLEKAINP 139
Score = 111 bits (279), Expect = 4e-29
Identities = 43/118 (36%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 618 NDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHK 677
+ V LS I + I+N ++++ + + F PVN K KDYY ++ +PMDL+T+ + +
Sbjct: 22 DPMVTLSSILESIIN-DMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRL 80
Query: 678 YHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKTIS 735
Y SR EF +ELI+ NS YNGP +T+ ++ +L+ L++ +D L +LEK I+
Sbjct: 81 YPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAIN 138
Score = 51.1 bits (122), Expect = 7e-08
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ +PMDL+T+ + + Y SR EF +ELI+ NS YNGP +
Sbjct: 61 KIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSL 108
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 142 bits (359), Expect = 6e-40
Identities = 70/128 (54%), Positives = 86/128 (67%)
Query: 614 LLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKA 673
LLDD+DQVA SFI D+IV K+ + D+W F PVNKKF DYY V+ PMDLETI K
Sbjct: 1 LLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNI 60
Query: 674 QSHKYHSRYEFLADIELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHLTQLEKT 733
HKY SR FL D+ LIL+NSV YNGP SQ T+ A++++ L +YD+HLTQLEK
Sbjct: 61 SKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKD 120
Query: 734 ISQVRARA 741
I + A
Sbjct: 121 ICTAKEAA 128
Score = 100 bits (249), Expect = 4e-25
Identities = 54/121 (44%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 492 DPVVVLTSILEKIL-NEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENL 550
D V + IL+ I+ +M + + P F PVN K VPDYYK++ PMDL+TIR+N+
Sbjct: 5 DDQVAFSFILDNIVTQKMMAVPDSWP----FHHPVNKKFVPDYYKVIVNPMDLETIRKNI 60
Query: 551 RSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEELLMRLEKA 610
KYQSRE FL DVN I+ NS YNG +S T A+ ++ +C + L + +E L +LEK
Sbjct: 61 SKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKD 120
Query: 611 I 611
I
Sbjct: 121 I 121
Score = 48.4 bits (115), Expect = 4e-07
Identities = 28/44 (63%), Positives = 30/44 (68%)
Query: 1069 KPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
PMDLETI K HKY SR FL D+ LIL+NSV YNGP SQ
Sbjct: 49 NPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQY 92
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 111
Score = 93.9 bits (233), Expect = 4e-23
Identities = 31/94 (32%), Positives = 56/94 (59%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
+L+N A AW F++PVNK+ DYY +++PMDL T+ K +S+KY +F+ D L+
Sbjct: 13 TELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVF 72
Query: 693 SNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDH 726
+N +YNG + + A +L + +++ ++
Sbjct: 73 NNCRMYNGENTSYYKYANRLEKFFNNKVKEIPEY 106
Score = 85.4 bits (211), Expect = 3e-20
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 499 SILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQSR 558
+ ++ IL E+++ + P F PVN + VPDYY + PMDL T+ L S KYQ
Sbjct: 6 AAIQNILTELQNHAAAWP----FLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKM 61
Query: 559 EEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEE 602
E+F+ D + N +YNG + A R+ + + E
Sbjct: 62 EDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPE 105
Score = 49.2 bits (117), Expect = 1e-07
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 1066 VSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
++PMDL T+ K +S+KY +F+ D L+ +N +YNG +
Sbjct: 39 FIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSY 85
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 88.5 bits (219), Expect = 2e-21
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
++K+ AW F++PV K DYY V++ P+DL+T+ ++ +S Y +R F+AD++ ++
Sbjct: 12 AQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVI 71
Query: 693 SNSVLYNGPGSQVTEKAEKLLE 714
+N YN P S+ A L +
Sbjct: 72 ANCREYNPPDSEYCRCASALEK 93
Score = 83.5 bits (206), Expect = 1e-19
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ 556
L + L+ +L +++ P F PV PDYY+++ P+DL+T+ E LRS+ Y
Sbjct: 3 LYTTLKNLLAQIKSHPSAWP----FMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYV 58
Query: 557 SREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELL 597
+R+ F+AD+ +++ N YN S A + L
Sbjct: 59 TRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKL 99
Score = 53.1 bits (127), Expect = 6e-09
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
V + P+DL+T+ ++ +S Y +R F+AD++ +++N YN P S+
Sbjct: 37 EVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEY 84
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 83.6 bits (206), Expect = 2e-19
Identities = 26/90 (28%), Positives = 52/90 (57%)
Query: 633 NKLKNMADAWIFIKPVNKKFFKDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLADIELIL 692
++K+ AW F++PV + YY V++ PMDL+T+ ++ ++ Y S+ F+AD++ +
Sbjct: 23 QQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVF 82
Query: 693 SNSVLYNGPGSQVTEKAEKLLEEAKLALEK 722
+N YN P S+ + A L + +++
Sbjct: 83 TNCKEYNPPESEYYKCANILEKFFFSKIKE 112
Score = 76.6 bits (188), Expect = 5e-17
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKLVPDYYKIVTRPMDLQTIRENLRSKKYQ 556
L S L+ IL +++ P F PV P YY+++ PMDL+T+ E L+++ Y
Sbjct: 14 LYSTLKSILQQVKSHQSAWP----FMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYV 69
Query: 557 SREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELL 597
S++ F+AD+ ++ N YN +S A + +
Sbjct: 70 SKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKI 110
Score = 48.5 bits (115), Expect = 3e-07
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 1065 TVSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
V + PMDL+T+ ++ ++ Y S+ F+AD++ + +N YN P S+
Sbjct: 48 EVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEY 95
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 81.5 bits (201), Expect = 7e-19
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 497 LTSILEKILNEMRDMSQTEPNVKQFSFPVNAKL--VPDYYKIVTRPMDLQTIRENLRSKK 554
L L L + +P F PV+ +L +PDY+ IV PMDL TI+ L + +
Sbjct: 7 LRQALMPTLEALYRQ---DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQ 63
Query: 555 YQSREEFLADVNQIVENSTLYNGAKSILTDAARRMLTLCVELLGKKEE 602
YQ +++ DV + N+ LYN S + ++ + + + +
Sbjct: 64 YQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 111
Score = 79.6 bits (196), Expect = 4e-18
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 630 IVNNKLKNMADAWIFIKPVNKKFF--KDYYSVVQKPMDLETIGKKAQSHKYHSRYEFLAD 687
+ + ++ F +PV+ + DY+ +V+ PMDL TI +K + +Y ++++ D
Sbjct: 14 TLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDD 73
Query: 688 IELILSNSVLYNGPGSQVTEKAEKLLEEAKLALEKYDDHL 727
+ L+ +N+ LYN S+V + KL E + ++ L
Sbjct: 74 VWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 113
Score = 53.4 bits (128), Expect = 6e-09
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 1066 VSQKPMDLETIGKKAQSHKYHSRYEFLADIELILSNSVLYNGPGSQV 1112
+ + PMDL TI +K + +Y ++++ D+ L+ +N+ LYN S+V
Sbjct: 45 IVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRV 91
>d1j09a1 a.97.1.1 (A:306-468) C-terminal domain of glutamyl-tRNA
synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}
Length = 163
Score = 32.2 bits (72), Expect = 0.27
Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 16/155 (10%)
Query: 467 RKANNPDNQLDYLKRHQKPANRRRTDPVVVLTSILEKILNEMRDMSQTEPNVKQFSFPVN 526
R+ + + + +K + A L + + MR T + + +
Sbjct: 14 REVLSLEEVAERVKPFLREAGLSWESEA-----YLRRAVELMRPRFDTLKEFPEKARYLF 68
Query: 527 AKLVPDYYKIVTRPMDLQTIRENLRSKKYQSREEFLADVNQIVENSTLYNGAKSILTDAA 586
+ P K + + + + L + E A + ++ G K
Sbjct: 69 TEDYPVSEKAQRKLEEGLPLLKELYPRLRAQEEWTEAALEALLRGFAAEKGVKLGQVAQP 128
Query: 587 RRM----------LTLCVELLGKKEELLMRLEKAI 611
R L + LLGK E L RLE+A+
Sbjct: 129 LRAALTGSLETPGLFEILALLGK-ERALRRLERAL 162
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 31.1 bits (69), Expect = 1.0
Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 14/132 (10%)
Query: 5 DELLADMEDEEEDNEGGEEMAADGMETEPDDVKPDVHKIIEQDIKGVRCRLAAKCALA-- 62
LLAD+E D GE ++ E +K +D+K V + A
Sbjct: 5 RNLLADVETFVADTLKGENLSKKAKEKRESLIK------KIKDVKSVYLQEFQDKGDAED 58
Query: 63 --ARVDAAHDSVDGAIGRSFREDIEKKLDKLTEPPPVKFVKPLPKPIEAG----RKKRGG 116
D D S R D + P + LP I+AG R+K
Sbjct: 59 GDEYDDPFAGPADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHS 118
Query: 117 KRVRKMKERYAM 128
+ ++R+
Sbjct: 119 FLGFEWQKRWCA 130
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic,
hybrid between Bacillus amyloliquefaciens and Bacillus
macerans proteins}
Length = 214
Score = 30.7 bits (68), Expect = 1.3
Identities = 21/176 (11%), Positives = 50/176 (28%), Gaps = 11/176 (6%)
Query: 748 DSFSTWTQDDDQFQSGL-DKEDFEYTDAEGNIKKENDGGLLEKDLEFSSEEERDDTISSN 806
+ F+++ + G + F T N+ NDG L + + S
Sbjct: 8 EPFNSYNSGTWEKADGYSNGGVFNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRST 67
Query: 807 QAWTKKILNIRM-LRFQSGL------DKEDFEYTDAEGNIKKENDGGLLEKDLEFSSEEE 859
+ + + M +G+ T + + + + +
Sbjct: 68 NIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTKVQFNYYTNGV 127
Query: 860 RDDNDMEEVVDDDSQQAAEAMVQL--GNITYYTDPNTEETSMDVDPNYDPSEFLLN 913
+ + D S+ G I +Y D + + + P + ++N
Sbjct: 128 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD-GVLKHTATANIPSTPGKIMMN 182
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Length = 561
Score = 31.0 bits (70), Expect = 1.5
Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 28/171 (16%)
Query: 500 ILEKILNEMRDMSQTEPN--VKQFSFPVNAK-LVPDY-----------YKIVTRPMDLQT 545
L + E ++ + +PN +KQ + +K + PD + PM
Sbjct: 208 KLVMFVEEGVNLYKDDPNYDIKQLALECASKRMYPDIISAKNNKAITGSSVPVSPMG--- 264
Query: 546 IRENLRSKKYQSREEFLADVNQI-----------VENSTLYNGAKSILTDAARRMLTLCV 594
R L K + E L N + +++ + + + LC
Sbjct: 265 CRSFLSVWKDSTGNEILDGRNNLGVVTLNLPRIALDSYIGTQFNEQKFVELFNERMDLCF 324
Query: 595 ELLGKKEELLMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFI 645
E L + L ++ + P+L + DD + KN +
Sbjct: 325 EALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGRSSVSLG 375
>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase
{Streptoverticillium mobaraense [TaxId: 35621]}
Length = 331
Score = 30.8 bits (69), Expect = 1.6
Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 49/190 (25%)
Query: 93 EPPPVKFVKPLPKPIEAGRKKRGGKR-------VRKMKERYAMTELRKQQ---------- 135
PP + + +P P G+ +RK ++ Y+ + RKQQ
Sbjct: 6 VTPPAEPLDRMPDPYRP----SYGRAETVVNNYIRKWQQVYSHRDGRKQQMTEEQREWLS 61
Query: 136 ----------------NRLSFADIEDDAYQEDLGYSRGTIGKTGA---GRIRTPQVDE-- 174
NRL+FA ++D ++ +L R G+T A GR+ DE
Sbjct: 62 YGCVGVTWVNSGQYPTNRLAFASFDEDRFKNELKNGRPRSGETRAEFEGRVAKESFDEEK 121
Query: 175 --KTKVRISKTLQKNLQRQQVWGGS-TTVKKQVSGTTSSI----AFTPLQLTLRRQKSRP 227
+ ++ + + L+ +KK+++ ++ A +P LR S
Sbjct: 122 GFQRAREVASVMNRALENAHDESAYLDNLKKELANGNDALRNEDARSPFYSALRNTPSFK 181
Query: 228 EKLGPNTSPT 237
E+ G N P+
Sbjct: 182 ERNGGNHDPS 191
Score = 30.5 bits (68), Expect = 2.0
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 40/118 (33%)
Query: 1496 EPPPVKFVKPLPKPIEAGRKKRGGKR-------VRKMKERYAMTELRKQQ---------- 1538
PP + + +P P G+ +RK ++ Y+ + RKQQ
Sbjct: 6 VTPPAEPLDRMPDPYRP----SYGRAETVVNNYIRKWQQVYSHRDGRKQQMTEEQREWLS 61
Query: 1539 ----------------NRLSFADIEDDAYQEDLGYSRGTIGKTGA---GRIRTPQVDE 1577
NRL+FA ++D ++ +L R G+T A GR+ DE
Sbjct: 62 YGCVGVTWVNSGQYPTNRLAFASFDEDRFKNELKNGRPRSGETRAEFEGRVAKESFDE 119
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 185
Score = 28.8 bits (64), Expect = 4.4
Identities = 14/147 (9%), Positives = 39/147 (26%), Gaps = 24/147 (16%)
Query: 603 LLMRLEKAINPLLDDNDQVALSFIFDDIVNNKLKNMADAWIFIKPVNKKFFKDYYS---- 658
L+ E + + Q D+ + + + D +
Sbjct: 46 SLITSELIV---QEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVR 102
Query: 659 ---VVQKPMDLETIG---KKAQSHKYHSRYEFLADIELILSNSVL-------YNGPGSQV 705
++ +P+ + K + K R + Y G +
Sbjct: 103 GIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLEYGGEEFSM 162
Query: 706 TEKAEKLLEEAKLALEKYDDHLTQLEK 732
+ ++ + K +D+L+ + +
Sbjct: 163 EDICQEWTNF----IMKSEDYLSSISE 185
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase
(KNTase), N-terminal domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 125
Score = 27.2 bits (60), Expect = 8.7
Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 699 NGPGSQVTEKAEKLLEEAKLAL-EKYDDHLTQLEKTISQVRARAMEQADVDSFSTWTQDD 757
NGP E+ K++ E K + +KY D + + S R +D++ + ++
Sbjct: 2 NGPIIMTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTEE 61
Query: 758 DQFQSGLDKEDFEYTDAEGNIKKENDGGLLEKDLEFSSEEERDDTISSNQAWTKKIL 814
+F + G K E + E L+++S+ E D ++ Q ++ +
Sbjct: 62 A---------EFSHEWTTGEWKVEVNFYSEEILLDYASQVESDWPLTHGQFFSILPI 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.372
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,277,444
Number of extensions: 304021
Number of successful extensions: 614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 36
Length of query: 1746
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1648
Effective length of database: 1,062,056
Effective search space: 1750268288
Effective search space used: 1750268288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.2 bits)