Query psy11168
Match_columns 126
No_of_seqs 101 out of 427
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:48:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o7d_D Lysosomal alpha-mannosi 100.0 1E-39 3.6E-44 252.9 13.8 122 1-126 21-150 (282)
2 3bvx_A Alpha-mannosidase 2; fa 99.9 3E-25 1E-29 195.8 13.9 120 1-126 694-813 (1045)
3 2wyh_A Alpha-mannosidase; hydr 99.3 3.7E-12 1.2E-16 111.3 10.5 112 3-126 570-719 (923)
4 3lvt_A Glycosyl hydrolase, fam 98.8 3.2E-08 1.1E-12 86.5 11.2 112 3-124 546-695 (899)
5 3op0_A Signal transduction pro 53.9 4.6 0.00016 31.3 1.3 13 28-40 248-260 (323)
6 3bux_B E3 ubiquitin-protein li 38.7 12 0.00041 29.1 1.5 12 29-40 264-275 (329)
7 3bal_A Acetylacetone-cleaving 22.4 46 0.0016 22.8 2.0 29 31-59 92-123 (153)
8 2rd1_A Putative outer membrane 21.1 28 0.00097 20.4 0.6 29 97-125 9-39 (62)
9 1e8p_A Endoglucanase, dockerin 21.0 38 0.0013 18.7 1.1 9 115-123 20-28 (46)
10 2k57_A Putative lipoprotein; s 18.1 34 0.0012 20.0 0.5 28 98-125 10-39 (61)
No 1
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6
Probab=100.00 E-value=1e-39 Score=252.92 Aligned_cols=122 Identities=20% Similarity=0.348 Sum_probs=108.3
Q ss_pred CeeEEecCCCcEEEEEEEEEEeecCCC----CCCceeeEEeeCCCCccCCCCCCcEEEEeCCcEEEEEEEcC-ceEEEEE
Q psy11168 1 MKSITDKDSKYTSPINLDFVTYTSRKG----KEMSGAYLFLPRGEAKSVPVTHPPVIIIQGPLVSMVIVELP-LVTHTVL 75 (126)
Q Consensus 1 L~si~~~~~g~~~~v~~~f~~Y~s~~~----~~~SGAYiF~P~~~~~~~~~~~~~~~v~~G~lv~ev~~~~~-~~~~~~r 75 (126)
|++|+++++|..++|+|+|+||.++.+ .++||||||||++++.+.....+.+.+++|||++||++.++ |++|++|
T Consensus 21 L~si~~~~~g~~~~v~q~f~~Y~s~~g~~~~~~~SGAYiFrP~g~~~~~~~~~~~~~v~~G~lv~eV~~~~~~~~sq~~R 100 (282)
T 1o7d_D 21 LMELENLEQNLLLPVRQAFYWYNASTGNNLSSQASGAYIFRPNQNKPLFVSHWAQTHLVKASLVQEVHQNFSAWCSQVVR 100 (282)
T ss_dssp EEEEEEC---CEEECEEEEEEEEBCCCBTTBSCCCCSSCCCBSSSSCEESCSCCEEEEEECSSCEEEEEEEETTEEEEEE
T ss_pred EEEEEEcCCCeEEEEeEEEEEEecccCCCCCCCCCceEEecCCCCCCcccCCCcEEEEEECCEEEEEEEEECCcEEEEEE
Confidence 689999999999999999999999854 46999999999998755444568899999999999999998 9999999
Q ss_pred EeecCCCCCCeEEEEEEe---eccCCCCeEEEEEEEeccccCCEEEecCCCCcC
Q psy11168 76 VNHVADSDDLGIDIQNLL---DIRQTVNTEVAMRLTTNIENQDVFYTDLNGYQS 126 (126)
Q Consensus 76 ly~~~~~~~~~ieie~~v---~i~~~~~kE~v~r~~t~i~n~~~FyTDsNG~em 126 (126)
||++. +++|+||+| |+.+.+|||+||||+|+|+|+++||||+|||||
T Consensus 101 ly~~~----~~vE~e~~Vgpipi~d~~~kEiv~r~~T~i~s~~~FYTDsNG~e~ 150 (282)
T 1o7d_D 101 LYPRQ----RHLELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREI 150 (282)
T ss_dssp ECTTC----SSEEEEEEECCCCCTTSCCEEEEEEEECCCCCTTEEEEESTTSSE
T ss_pred EecCC----ceEEEEEEEccccccCCCCcEEEEEEEeeeccCCeEEECCCCcee
Confidence 99875 799999999 677899999999999999999999999999997
No 2
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...
Probab=99.93 E-value=3e-25 Score=195.77 Aligned_cols=120 Identities=43% Similarity=0.670 Sum_probs=109.0
Q ss_pred CeeEEecCCCcEEEEEEEEEEeecCCCCCCceeeEEeeCCCCccCCCCCCcEEEEeCCcEEEEEEEcCceEEEEEEeecC
Q psy11168 1 MKSITDKDSKYTSPINLDFVTYTSRKGKEMSGAYLFLPRGEAKSVPVTHPPVIIIQGPLVSMVIVELPLVTHTVLVNHVA 80 (126)
Q Consensus 1 L~si~~~~~g~~~~v~~~f~~Y~s~~~~~~SGAYiF~P~~~~~~~~~~~~~~~v~~G~lv~ev~~~~~~~~~~~rly~~~ 80 (126)
|++|.++++|....+.++|.+|++..+++.||||+|+|++++.|.....+.+.+.+|||+++|++.+.|++|++||
T Consensus 694 L~si~dk~~g~e~~~~~~f~~Y~~~~~~~~sgaY~F~P~~~~~~~~~~~~~~~v~~Gpl~~ev~~~~~~i~q~irL---- 769 (1045)
T 3bvx_A 694 LKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQTIM---- 769 (1045)
T ss_dssp EEEEECSTTSCCEEEEEEEEEECBCSSSCCCCSSCCCBSSSCEECCCCSCCEEEEECSSCEEEEEEETTEEEEEEE----
T ss_pred EEEEEEcCCCeEEEEeeEEEEEecccCCCCCcceEecCCCCCcccccCCceEEEEeCCeEEEEEEEEeeEEEEEEE----
Confidence 4689999999999999999999987777899999999999887744446788899999999999999999999999
Q ss_pred CCCCCeEEEEEEeeccCCCCeEEEEEEEeccccCCEEEecCCCCcC
Q psy11168 81 DSDDLGIDIQNLLDIRQTVNTEVAMRLTTNIENQDVFYTDLNGYQS 126 (126)
Q Consensus 81 ~~~~~~ieie~~v~i~~~~~kE~v~r~~t~i~n~~~FyTDsNG~em 126 (126)
.+++||+++.||+.+..|+|+++||.|+|+|++.||||+||++|
T Consensus 770 --~~~~ieie~~Vd~~~~~~~el~~rf~t~i~s~~~fyTD~nG~~~ 813 (1045)
T 3bvx_A 770 --RGGAPEIRNLVDIGSLDNTEIVMRLETHIDSGDIFYTDLNGLQF 813 (1045)
T ss_dssp --SSSSCEEEEEECCTTCTTEEEEEEEEECCCCTTEEEEEETTTEE
T ss_pred --CCeeEEEEEEEecCCCCCeEEEEEeecccCCCCeEEEecCCcee
Confidence 23689999999988878999999999999999999999999986
No 3
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Probab=99.35 E-value=3.7e-12 Score=111.34 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=90.1
Q ss_pred eEEecCCCcEEEEEEEEEEeecCCCCCCceeeEEeeCCCCccC--CCCCCcEEEEe-CCcEEEEEEEc------------
Q psy11168 3 SITDKDSKYTSPINLDFVTYTSRKGKEMSGAYLFLPRGEAKSV--PVTHPPVIIIQ-GPLVSMVIVEL------------ 67 (126)
Q Consensus 3 si~~~~~g~~~~v~~~f~~Y~s~~~~~~SGAYiF~P~~~~~~~--~~~~~~~~v~~-G~lv~ev~~~~------------ 67 (126)
+|.++.+|.... +|.+|... .+.+|||+|+|+....++ ....+.+.+++ ||++++|++.+
T Consensus 570 si~dk~~gr~~~---~~~~y~d~--~d~~day~f~p~~~~~~~~~~~~~~~i~v~~~gpl~~~v~~~~~~~vP~~~~~~L 644 (923)
T 2wyh_A 570 TITDKQSGLIYQ---DLLRFEDC--GDIGNEYISRQPNHDQPFYADQGTIKLNIISNTAQVAELEIQQTFAIPISADKLL 644 (923)
T ss_dssp EEEETTTCCEEE---EESEEEEE--ECCSCSSCCCCCTTCCCEEGGGSEEEEEEEEECSSEEEEEEEEEEEEESSBCTHH
T ss_pred EEEECCCCeEEE---EEEEEeec--CCCCCeeEEEcCCCCceeeccCCCceEEEEEcCCCEEEEEEEEEecCCccchhhh
Confidence 788888888765 78888654 378999999998776553 33456788887 99999999875
Q ss_pred ------------------C-----ceEEEEEEeecCCCCCCeEEEEEEeeccCCCCeEEEEEEEeccccCCEEEecCCCC
Q psy11168 68 ------------------P-----LVTHTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVAMRLTTNIENQDVFYTDLNGY 124 (126)
Q Consensus 68 ------------------~-----~~~~~~rly~~~~~~~~~ieie~~v~i~~~~~kE~v~r~~t~i~n~~~FyTDsNG~ 124 (126)
+ +++|.+|||++. +.||+++.|+.. ..++++.++|.|+|+++..|| | ||+
T Consensus 645 ~~~~~~~~~~~~r~~~~s~~~~~~~i~q~i~L~~~~----~~ie~~~~vd~~-~~~~~l~v~fpt~i~s~~~~~-d-~~f 717 (923)
T 2wyh_A 645 QAEMEAVIDITERQARRSQEKAELTLTTLIRMEKNN----PRLQFTTRFDNQ-MTNHRLRVLFPTHLKTDHHLA-D-SIF 717 (923)
T ss_dssp HHHHHTTCCGGGCCCCBCSCEEEEEEEEEEEEETTC----SCEEEEEEEEEC-CCSEEEEEEEECCCCCSEEEE-E-ETT
T ss_pred ccccccccchhhhhhcccccccceEEEEEEEEeCCC----ceEEEEEEECCc-cCCEEEEEEeccccCCCCEEE-e-cCc
Confidence 1 489999999765 789999999865 468999999999999887555 5 888
Q ss_pred cC
Q psy11168 125 QS 126 (126)
Q Consensus 125 em 126 (126)
++
T Consensus 718 g~ 719 (923)
T 2wyh_A 718 ET 719 (923)
T ss_dssp EE
T ss_pred eE
Confidence 64
No 4
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}
Probab=98.80 E-value=3.2e-08 Score=86.49 Aligned_cols=112 Identities=11% Similarity=0.183 Sum_probs=86.9
Q ss_pred eEEecCCCcEEEEEEEEEEeecCCCCCCceeeEEeeCCCCccCC-C-CCCcEEEE-eCCcEEEEEEEcC-----------
Q psy11168 3 SITDKDSKYTSPINLDFVTYTSRKGKEMSGAYLFLPRGEAKSVP-V-THPPVIII-QGPLVSMVIVELP----------- 68 (126)
Q Consensus 3 si~~~~~g~~~~v~~~f~~Y~s~~~~~~SGAYiF~P~~~~~~~~-~-~~~~~~v~-~G~lv~ev~~~~~----------- 68 (126)
+|.++.+|.... ++.+|... .+.+++|+|+|.....|+. . ....+.++ +||++++|++...
T Consensus 546 sl~Dk~~gre~~---~~~~~~d~--gd~g~~Y~~~p~~~d~~~~~~~~~~~v~v~e~gpl~~~v~v~~~~~~P~~~~~~~ 620 (899)
T 3lvt_A 546 TIADKKTGETFS---KLLTFEDT--GDIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKASYQIKQTVMLPVAADERL 620 (899)
T ss_dssp EEEETTTCCEEE---EETEEEEE--ECCSBTTBCCCCTTCCCEESTTCCCEEEEEEECSSEEEEEEEEEEEEESSBCTHH
T ss_pred EEEECCCCeEEE---EEEEEecC--CCCCCceeecCCcCCceeeccCCCceEEEEEcCCCEEEEEEEEEEccccchhhhh
Confidence 678888888654 46666432 3679999999976555532 2 23677776 7999999986431
Q ss_pred ------------------------ceEEEEEEeecCCCCCCeEEEEEEeeccCCCCeEEEEEEEeccccCCEEEecCCCC
Q psy11168 69 ------------------------LVTHTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVAMRLTTNIENQDVFYTDLNGY 124 (126)
Q Consensus 69 ------------------------~~~~~~rly~~~~~~~~~ieie~~v~i~~~~~kE~v~r~~t~i~n~~~FyTDsNG~ 124 (126)
++.|.+|||++. ++||+++.|+.. ..++.|-++|.++|.+...+|++..|.
T Consensus 621 ~~~~~~~~~~~~r~~~~S~~~~~~~i~q~i~L~~~~----~~id~~~~Vdw~-~~~~~Lrv~Fp~~i~s~~~~~d~~fG~ 695 (899)
T 3lvt_A 621 EEEQKAVREFRERLAQRSTTLRPFEITTMVTMIKES----NQLFFETTINNQ-IKDHRLRVLFPTGMVTETHEADSIYEV 695 (899)
T ss_dssp HHHHHTTCCGGGCCCCBCSCEEEEEEEEEEEEETTC----CCEEEEEEEEEC-CCSEEEEEEECCSCCCSEEEEECSSSE
T ss_pred cccccccccchhhhhcccccccceEEEEEEEEeCCC----CEEEEEEEECCC-cCCEEEEEECCCCCCcCceEEeccceE
Confidence 588999999765 789999999864 558999999999999999999998873
No 5
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=53.92 E-value=4.6 Score=31.33 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=11.1
Q ss_pred CCCceeeEEeeCC
Q psy11168 28 KEMSGAYLFLPRG 40 (126)
Q Consensus 28 ~~~SGAYiF~P~~ 40 (126)
.+++|+||||+..
T Consensus 248 ~~KpGsYIfR~Sc 260 (323)
T 3op0_A 248 RDKPGSYIFRPSC 260 (323)
T ss_dssp GGSTTEEEEEECS
T ss_pred ccCCCcEEEEecc
Confidence 4789999999965
No 6
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=38.65 E-value=12 Score=29.12 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=10.7
Q ss_pred CCceeeEEeeCC
Q psy11168 29 EMSGAYLFLPRG 40 (126)
Q Consensus 29 ~~SGAYiF~P~~ 40 (126)
+++|.||||+..
T Consensus 264 ~kpGsYIfR~Sc 275 (329)
T 3bux_B 264 HKPGSYIFRLSC 275 (329)
T ss_dssp TSTTEEEEEECS
T ss_pred CCCCcEEEEecc
Confidence 789999999965
No 7
>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}
Probab=22.44 E-value=46 Score=22.84 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=17.7
Q ss_pred ceeeEEeeCCCCc-cC--CCCCCcEEEEeCCc
Q psy11168 31 SGAYLFLPRGEAK-SV--PVTHPPVIIIQGPL 59 (126)
Q Consensus 31 SGAYiF~P~~~~~-~~--~~~~~~~~v~~G~l 59 (126)
.|.|+|.|-|... |. .....-+.+..||+
T Consensus 92 aGsYv~ePpGs~H~p~~~~~~~~~~~~~~Gp~ 123 (153)
T 3bal_A 92 APSYGFESSGALHGKTFFPVESQFYMTFLGPL 123 (153)
T ss_dssp SSEEEEECTTCEESCCEESSCEEEEEEEESCE
T ss_pred CCeEEEcCCCCcccceeCCCCeEEEEEEECCe
Confidence 8999999988753 21 11222244577773
No 8
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=21.08 E-value=28 Score=20.44 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=18.6
Q ss_pred CCCCeEEEEEEEeccccCC--EEEecCCCCc
Q psy11168 97 QTVNTEVAMRLTTNIENQD--VFYTDLNGYQ 125 (126)
Q Consensus 97 ~~~~kE~v~r~~t~i~n~~--~FyTDsNG~e 125 (126)
-..|++++..=+..++... .=|+|.||.+
T Consensus 9 t~DG~~IvT~gKP~~D~dTGm~sY~D~~G~~ 39 (62)
T 2rd1_A 9 TKNGQTIVTQGKPQLDKETGMTSYTDQEGNQ 39 (62)
T ss_dssp ETTSCEEEEESCCEEETTTTEEEEECTTSCE
T ss_pred eCCCcEEEcCCCcceeCCCCCEEEEcCCCCE
Confidence 3557777666555554433 4589999965
No 9
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=21.00 E-value=38 Score=18.72 Aligned_cols=9 Identities=56% Similarity=0.789 Sum_probs=7.5
Q ss_pred CEEEecCCC
Q psy11168 115 DVFYTDLNG 123 (126)
Q Consensus 115 ~~FyTDsNG 123 (126)
.++|||.+|
T Consensus 20 ~V~YtD~dG 28 (46)
T 1e8p_A 20 KVEYTDASG 28 (46)
T ss_dssp CEEEEETTE
T ss_pred eEEEEcCCC
Confidence 589999877
No 10
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=18.13 E-value=34 Score=20.01 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=16.9
Q ss_pred CCCeEEEEEEEeccccCC--EEEecCCCCc
Q psy11168 98 TVNTEVAMRLTTNIENQD--VFYTDLNGYQ 125 (126)
Q Consensus 98 ~~~kE~v~r~~t~i~n~~--~FyTDsNG~e 125 (126)
..|++++..=+..++... .=|+|.||.+
T Consensus 10 ~DG~~IvT~gKP~~D~dTGmysY~D~~G~~ 39 (61)
T 2k57_A 10 NDGREIQAVDTPKYDEESGFYEFKQLDGKQ 39 (61)
T ss_dssp SSSCEEEESSCCEECTTTCEEEEEBTTSCE
T ss_pred CCCcEEEcCCCccccCCCCCEEEEcCCCCE
Confidence 456666554444454433 4588999964
Done!