RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11168
(126 letters)
>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase.
Length = 1050
Score = 68.7 bits (168), Expect = 1e-14
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Query: 1 MKSITDKDSKYTSPINLDFVTYTSRKGKEMSGAYLFLPRGEAKSVPVTHPPVIIIQGPLV 60
++ I + + + + Y+S+ SGAYLF P GEA+ + V++ +GPLV
Sbjct: 660 LRKIKIHKNGSETVVGEEIGMYSSQG----SGAYLFKPDGEAQPIVQAGGLVVVSEGPLV 715
Query: 61 SMV-------IVELPLVTHTVLVNHVADSDDLGIDIQNLLDIRQTV--NTEVAMRLTTNI 111
V + PL T L + DL ++ + +++ + E+ +R T+I
Sbjct: 716 QEVHSVPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGHDFNDKELIVRFKTDI 775
Query: 112 ENQDVFYTDLNGYQ 125
+N+ VFY+DLNG+Q
Sbjct: 776 DNKRVFYSDLNGFQ 789
>gnl|CDD|219551 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases family 38
C-terminal domain. Glycosyl hydrolases are key enzymes
of carbohydrate metabolism.
Length = 379
Score = 43.9 bits (104), Expect = 5e-06
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 17/95 (17%)
Query: 31 SGAYLFLPRGEAKSVPVTHPPVIIIQGPLVSMVIVELPLVTHTVLVNHVADSDDLGIDIQ 90
SGAYLFLP G ++V V +S VI L I+ +
Sbjct: 99 SGAYLFLPNGPLRAVVRVE--VHQYGSSWISQVI---RLYAGK---PR--------IEFE 142
Query: 91 NLLDIRQTVNTEVAMRLTTNIENQDVFYTDLNGYQ 125
+D + + E+ +R T+I + FY D NG
Sbjct: 143 TTVDWPER-HKELKVRFPTDINSDKAFYEDQNGVI 176
>gnl|CDD|145054 pfam01700, Orbi_VP3, Orbivirus VP3 (T2) protein. The orbivirus VP3
protein is part of the virus core and makes a 'subcore'
shell made up of 120 copies of the 100K protein. VP3
particles can also bind RNA and are fundamental in the
early stages of viral core formation. Also found in the
family is structural core protein VP2 from broadhaven
virus which is similar to VP3 in bluetongue virus.
Orbivirus are part of the larger reoviridae which have a
dsRNA genome of 10-12 linear segments; orbivirus found
in this family include bluetongue virus and epizootic
hemorrhagic disease virus.
Length = 890
Score = 32.0 bits (73), Expect = 0.056
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 71 THTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVAMRLTTN--IENQDVFYTDLNGY 124
TH VAD D LG+D++N+L N + IENQ+V ++ Y
Sbjct: 138 THDHRGMEVADPDALGVDVKNMLSSLTAENRAMIQNQLDGFIIENQNVADRLVDVY 193
>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated.
Length = 404
Score = 27.5 bits (62), Expect = 1.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 104 AMRLTTNIENQDVFYTDLNGYQS 126
+MRL N+ Q T L GYQS
Sbjct: 273 SMRLCANVPAQHAIQTALGGYQS 295
>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing
protein/aminotransferase; Provisional.
Length = 517
Score = 27.0 bits (60), Expect = 3.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 105 MRLTTNIENQDVFYTDLNGYQS 126
MRL +N+ Q + T L G+QS
Sbjct: 387 MRLCSNVPAQSIVQTALGGHQS 408
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 26.9 bits (59), Expect = 3.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 22 YTSRKGKEMSGAYLFLPRGEAKSVPVTH 49
Y S G++ +Y PRGE KS T
Sbjct: 155 YISTSGRQRVKSYTPKPRGEVKSSSPTQ 182
>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase.
Length = 545
Score = 26.5 bits (59), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 51 PVIIIQGPLVSMVIVELPLVTHTVLVNH 78
P++ I+GPL + ++E +T LVN+
Sbjct: 117 PLMRIEGPLAVVQLLETTFLT---LVNY 141
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 26.1 bits (58), Expect = 5.7
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 66 ELPLVTHTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVAMRLTTNIENQDV 116
E P+V +A G DI+++ DIR TV + IE +
Sbjct: 167 EKPIV-------EIARRLKAGEDIKDIKDIRGTV---YLTKDLDWIEKDYI 207
>gnl|CDD|202568 pfam03181, BURP, BURP domain. The BURP domain is found at the
C-terminus of several different plant proteins. It was
named after the proteins in which it was first
identified: the BNM2 clone-derived protein from
Brassica napus; USPs and USP-like proteins; RD22 from
Arabidopsis thaliana; and PG1beta from Lycopersicon
esculentum. This domain is around 230 amino acid
residues long. It possesses the following conserved
features: two phenylalanine residues at its N-terminus;
two cysteine residues; and four repeated
cysteine-histidine motifs, arranged as:
CH-X(10)-CH-X(25-27)-CH-X(25-26)-CH, where X can be any
amino acid. The function of this domain is unknown.
Length = 216
Score = 25.4 bits (56), Expect = 8.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 36 FLPRGEAKSVPVT 48
FLPR A S+P +
Sbjct: 30 FLPRQIADSIPFS 42
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.376
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,217,858
Number of extensions: 544207
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 15
Length of query: 126
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 41
Effective length of database: 7,167,512
Effective search space: 293867992
Effective search space used: 293867992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)