RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11168
(126 letters)
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
b.30.5.6
Length = 282
Score = 100 bits (250), Expect = 4e-27
Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Query: 1 MKSITDKDSKYTSPINLDFVTYTSRKG----KEMSGAYLFLPRGEAKSVPVTHPPVIIIQ 56
+ + + + P+ F Y + G + SGAY+F P +++
Sbjct: 21 LMELENLEQNLLLPVRQAFYWYNASTGNNLSSQASGAYIFRPNQNKPLFVSHWAQTHLVK 80
Query: 57 GPLVSMVIVEL-PLVTHTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVAMRLTTNIENQD 115
LV V + V + +L + + + EV R T + +
Sbjct: 81 ASLVQEVHQNFSAWCSQVVRLYPRQRHLELEWTV-GPIPVGDGWGKEVISRFDTALATRG 139
Query: 116 VFYTDLNGYQ 125
+FYTD NG +
Sbjct: 140 LFYTDSNGRE 149
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase,
golgi apparatus, membrane, signal-anchor, transmembrane;
HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1
b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A*
3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A*
1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A*
2alw_A* 2f18_A* ...
Length = 1045
Score = 99 bits (248), Expect = 8e-26
Identities = 52/126 (41%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Query: 1 MKSITDKDSKYTSPINLDFVTYTSRKGKEMSGAYLFLPRGEAKSVPVTHPPVIIIQGPLV 60
+KSI P++ F+ Y R + SGAYLFLP G A V + P V++ +G L
Sbjct: 694 LKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKLE 753
Query: 61 SMVIVELPLVTHTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVAMRLTTNIENQDVFYTD 120
S V V LP V H ++ A +I+NL+DI NTE+ MRL T+I++ D+FYTD
Sbjct: 754 SSVSVGLPSVVHQTIMRGGAP------EIRNLVDIGSLDNTEIVMRLETHIDSGDIFYTD 807
Query: 121 LNGYQS 126
LNG Q
Sbjct: 808 LNGLQF 813
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 31.0 bits (70), Expect = 0.083
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 20 VTYTSRKGKEMSGAYLFLPRGEAKSVPVTHPPVIIIQG 57
VT++ +G+ + G +L +P+ E + +P V+ G
Sbjct: 71 VTFSGYRGQRIKG-WLLVPKLEEEKLPC----VVQYIG 103
>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; 2.30A {Bacteroides fragilis}
Length = 398
Score = 29.7 bits (66), Expect = 0.22
Identities = 4/28 (14%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 20 VTYTSRKGKEMSGAYLFLPRGEAKSVPV 47
+ + + +P K VP
Sbjct: 95 WEFYPLPKCVST-FLVLIPDNINKPVPA 121
>2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein,
icosahedral virus; 3.50A {Bluetongue virus} SCOP:
e.28.1.1
Length = 901
Score = 29.3 bits (65), Expect = 0.37
Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 61 SMVIVELPLVTHTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVAMRL--TTNIENQDVFY 118
S ++ ++P VA+ + LG++ +N+L + + + + IEN +V
Sbjct: 142 SFILHDIP--ARDHRGMEVAEPEVLGVEFKNVLPVLTAEHRAMIQNALDGSIIENGNVAT 199
Query: 119 TDLNGY 124
D++ +
Sbjct: 200 RDVDVF 205
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 29.0 bits (65), Expect = 0.39
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 5/38 (13%)
Query: 20 VTYTSRKGKEMSGAYLFLPRGEAKSVPVTHPPVIIIQG 57
V S G + Y+ P V+++ G
Sbjct: 336 VWVESFDGSRVPT-YVLESGRAPTPGPT----VVLVHG 368
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.43
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 46 PVTHPPVIIIQGPLVSMVIVELPLVTHTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVA 104
P P + +S PL+ L ++V + LG L +
Sbjct: 222 PSNTPDKDYLLSIPISC-----PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Score = 28.1 bits (62), Expect = 0.96
Identities = 15/116 (12%), Positives = 29/116 (25%), Gaps = 41/116 (35%)
Query: 3 SITDKDSKYTSPINLDFVTYTSRKGKEMSGAYLF--LPRGEAKSVPV-----THPPVIII 55
SI D + + F ++ +E A +F + G+ K+ + H
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 56 QGPLVSMVIVELPLVTHTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVAMRLTTNI 111
+ + LL T T+ A+
Sbjct: 1720 RSE-------------------------------KGLLS--ATQFTQPAL-TLMEK 1741
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 27.9 bits (61), Expect = 0.91
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 5/38 (13%)
Query: 20 VTYTSRKGKEMSGAYLFLPRGEAKSVPVTHPPVIIIQG 57
+ + + P +VP V+ I G
Sbjct: 90 WEFYPFPKSVSTF-LVLKPEHLKGAVPG----VLCIPG 122
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB:
2wtn_A*
Length = 251
Score = 26.1 bits (58), Expect = 3.6
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 22 YTSRKGKEMSGAYLFLPRGEAKSVPVTHPPVIIIQG 57
Y G +++ YL +P+ + P+ III G
Sbjct: 5 YIDCDGIKLNA-YLDMPKNNPEKCPL----CIIIHG 35
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 25.7 bits (57), Expect = 5.2
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 6/45 (13%)
Query: 37 LPRGE---AKSVPVTHPPVIIIQGPLVSMVIVELPLVTHTVLVNH 78
+P G + P I ++G + E ++ +
Sbjct: 80 IPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILG---FICQ 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.376
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,826,788
Number of extensions: 101005
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 13
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)