RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11168
         (126 letters)



>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 522

 Score = 95.9 bits (238), Expect = 6e-25
 Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 6/125 (4%)

Query: 1   MKSITDKDSKYTSPINLDFVTYTSRKGKEMSGAYLFLPRGEAKSVPVTHPPVIIIQGPLV 60
           +KSI         P++  F+ Y  R   + SGAYLFLP G A  V +  P V++ +G L 
Sbjct: 172 LKSIQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKLE 231

Query: 61  SMVIVELPLVTHTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVAMRLTTNIENQDVFYTD 120
           S V V LP V H  ++   A       +I+NL+DI    NTE+ MRL T+I++ D+FYTD
Sbjct: 232 SSVSVGLPSVVHQTIMRGGAP------EIRNLVDIGSLDNTEIVMRLETHIDSGDIFYTD 285

Query: 121 LNGYQ 125
           LNG Q
Sbjct: 286 LNGLQ 290


>g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal
           alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 490

 Score = 69.4 bits (169), Expect = 1e-15
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 6/130 (4%)

Query: 1   MKSITDKDSKYTSPINLDFVTYTSRKGKE----MSGAYLFLPRGEAKSVPVTHPPVIIIQ 56
           +  + + +     P+   F  Y +  G       SGAY+F P               +++
Sbjct: 115 LMELENLEQNLLLPVRQAFYWYNASTGNNLSSQASGAYIFRPNQNKPLFVSHWAQTHLVK 174

Query: 57  GPLVSMVIVEL-PLVTHTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVAMRLTTNIENQD 115
             LV  V        +  V +       +L   +   + +      EV  R  T +  + 
Sbjct: 175 ASLVQEVHQNFSAWCSQVVRLYPRQRHLELEWTV-GPIPVGDGWGKEVISRFDTALATRG 233

Query: 116 VFYTDLNGYQ 125
           +FYTD NG +
Sbjct: 234 LFYTDSNGRE 243


>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
           40051]}
          Length = 845

 Score = 31.0 bits (70), Expect = 0.033
 Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 61  SMVIVELPLVTHTVLVNHVADSDDLGIDIQNLLDIRQTVNTEVAMRL--TTNIENQDVFY 118
           S ++ ++P          VA+ + LG++ +N+L +    +  +       + IEN +V  
Sbjct: 86  SFILHDIP--ARDHRGMEVAEPEVLGVEFKNVLPVLTAEHRAMIQNALDGSIIENGNVAT 143

Query: 119 TDLNGY 124
            D++ +
Sbjct: 144 RDVDVF 149


>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase
           Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 119

 Score = 25.5 bits (56), Expect = 1.5
 Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 6/46 (13%)

Query: 36  FLPRGEA---KSVPVTHPPVIIIQGPLVSMVIVELPLVTHTVLVNH 78
            +P G     +       P I ++G      + E  ++     +  
Sbjct: 73  AIPEGTILFPRDANGLPVPFIRVEGRYCDFGMYETAILG---FICQ 115


>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 137

 Score = 25.6 bits (56), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 51  PVIIIQGPLVSMVIVELPLVTHTVLVNH 78
           P+I I+GPL    +VE  L+    +VN 
Sbjct: 110 PLIQIEGPLAQCQLVETALLN---MVNF 134


>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase,
           N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 141

 Score = 24.3 bits (53), Expect = 3.8
 Identities = 5/22 (22%), Positives = 13/22 (59%)

Query: 48  THPPVIIIQGPLVSMVIVELPL 69
                + ++GP + +++ E+PL
Sbjct: 105 NDEFFLRLKGPWLHVILFEVPL 126


>d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin
          hydrolase IroE {Escherichia coli [TaxId: 562]}
          Length = 265

 Score = 24.6 bits (52), Expect = 4.0
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 3  SITDKDSKYTSPINLDFVTYTSRKGKEMSGAYLFLPRG--EAKSVPV 47
          +I DK S +    +    ++ S  G      +  +P     A   P+
Sbjct: 2  NIADKGSVFY---HFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPI 45


>d1vlpa1 d.41.2.2 (A:1-149) Nicotinate phosphoribosyltransferase,
           N-terminal domain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 149

 Score = 23.9 bits (52), Expect = 4.9
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 37  LPRGEAKSVPVTHPPVIIIQGPLVSMVIVELPL 69
               E +  P  +   I++ G     ++ E+PL
Sbjct: 103 FTSEEIEGKPTHYKLKILVSGSWKDTILYEIPL 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 430,042
Number of extensions: 17441
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 12
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.8 bits)