Query psy11169
Match_columns 66
No_of_seqs 104 out of 480
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:49:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3913|consensus 99.9 6.4E-26 1.4E-30 156.0 5.2 65 1-65 50-114 (356)
2 PF00110 wnt: wnt family; Int 99.9 6.3E-26 1.4E-30 154.1 1.2 64 2-65 5-69 (310)
3 smart00097 WNT1 found in Wnt-1 99.9 7.6E-25 1.7E-29 148.7 6.2 64 2-65 2-65 (305)
4 PLN02277 H(+) -translocating i 84.0 1.3 2.9E-05 34.0 3.2 23 19-41 561-583 (730)
5 TIGR01104 V_PPase vacuolar-typ 83.6 1.4 3E-05 33.8 3.1 23 19-41 529-551 (697)
6 PRK00733 hppA membrane-bound p 80.8 2.1 4.6E-05 32.6 3.3 24 19-42 504-527 (666)
7 PLN02255 H(+) -translocating i 79.1 2.5 5.4E-05 32.8 3.1 23 19-41 592-614 (765)
8 PF03030 H_PPase: Inorganic H+ 78.0 2.4 5.2E-05 32.4 2.8 24 19-42 529-552 (682)
9 COG3728 XtmA Phage terminase, 69.3 2.1 4.5E-05 27.7 0.6 27 4-30 2-28 (179)
10 KOG4114|consensus 63.2 12 0.00026 20.8 2.8 31 10-40 29-61 (73)
11 PF06345 Drf_DAD: DRF Autoregu 57.3 9.7 0.00021 14.9 1.3 13 18-30 1-13 (15)
12 PF14483 Cut8_M: Cut8 dimerisa 53.1 8.8 0.00019 18.6 1.1 23 3-25 8-35 (38)
13 PF03592 Terminase_2: Terminas 50.5 5.3 0.00012 24.0 0.0 15 5-19 1-15 (144)
14 COG1174 OpuBB ABC-type proline 49.1 27 0.00059 23.3 3.2 30 4-33 128-157 (221)
15 PF11169 DUF2956: Protein of u 42.4 61 0.0013 19.2 3.7 27 3-39 18-44 (103)
16 PF04418 DUF543: Domain of unk 37.6 18 0.00039 20.2 0.9 16 24-39 60-75 (75)
17 PRK02289 4-oxalocrotonate taut 34.8 68 0.0015 16.3 3.1 10 2-11 9-18 (60)
18 PF12830 Nipped-B_C: Sister ch 29.9 1E+02 0.0022 19.4 3.5 33 10-42 70-103 (187)
19 PF06514 PsbU: Photosystem II 28.0 41 0.00088 19.6 1.3 17 2-18 54-70 (93)
20 PF08444 Gly_acyl_tr_C: Aralky 26.7 19 0.0004 20.8 -0.3 8 39-46 81-88 (89)
21 PF07023 DUF1315: Protein of u 25.8 44 0.00095 19.5 1.2 38 4-41 30-80 (93)
22 TIGR00133 gatB glutamyl-tRNA(G 23.9 70 0.0015 23.6 2.2 45 12-62 42-93 (478)
23 PF08748 DUF1789: Domain of un 23.5 1.4E+02 0.003 18.2 3.1 23 11-33 101-123 (128)
24 PF08688 ASD1: Apx/Shroom doma 22.6 44 0.00095 21.7 0.8 21 4-24 129-149 (182)
25 KOG3838|consensus 22.2 59 0.0013 24.0 1.5 20 24-43 169-188 (497)
26 PF14445 Prok-RING_2: Prokaryo 21.4 28 0.0006 18.3 -0.2 8 40-47 28-35 (57)
27 COG3139 Uncharacterized protei 21.3 60 0.0013 18.7 1.1 12 4-15 32-43 (90)
28 PF12010 DUF3502: Domain of un 21.1 93 0.002 18.6 2.1 23 17-39 104-127 (134)
29 PHA03356 tegument protein UL11 20.7 95 0.0021 17.9 1.9 18 40-57 74-91 (93)
30 TIGR00165 S18 ribosomal protei 20.6 1.6E+02 0.0034 16.1 2.7 9 3-11 42-50 (70)
No 1
>KOG3913|consensus
Probab=99.92 E-value=6.4e-26 Score=156.04 Aligned_cols=65 Identities=31% Similarity=0.518 Sum_probs=62.0
Q ss_pred CCCCCcHHHHhHhhcccchHHHHHHHHHHHHHHHHHhhCcCCCCCCCCCCCCCcccccccccccC
Q psy11169 1 MEYGFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLTPDLITEFVDH 65 (66)
Q Consensus 1 ~~~~l~~~Q~~lC~~~~~~~~~v~~G~~~a~~eCq~qF~~~RWNCs~~~~~~~~~~~l~~g~kE~ 65 (66)
+++||+++|+++|++||++|++|.+|+++||+|||+||+++|||||+.+..+.|+++|+.|+||+
T Consensus 50 ~l~gL~~~Q~~~Cr~~p~~~~sv~~G~~~~i~ECq~QFr~~RWNCs~~~~~~~~g~~l~~g~REs 114 (356)
T KOG3913|consen 50 NLPGLSPRQRRLCRRNPDVMPSVAEGAREGIQECQFQFRFRRWNCSTLDQLPVFGPLLSRGTRET 114 (356)
T ss_pred hccccCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccccchhhcccchHH
Confidence 47899999999999999999999999999999999999999999999876779999999999996
No 2
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=99.91 E-value=6.3e-26 Score=154.09 Aligned_cols=64 Identities=30% Similarity=0.625 Sum_probs=37.0
Q ss_pred CCCCcHHHHhHhhcccchHHHHHHHHHHHHHHHHHhhCcCCCCCCCCCCCCCccc-ccccccccC
Q psy11169 2 EYGFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLTP-DLITEFVDH 65 (66)
Q Consensus 2 ~~~l~~~Q~~lC~~~~~~~~~v~~G~~~a~~eCq~qF~~~RWNCs~~~~~~~~~~-~l~~g~kE~ 65 (66)
++||+++|+++|+++|++|++|++|+++|++|||+||+++|||||.....+.|++ ++.+|+||+
T Consensus 5 ~~gL~~~Q~~~C~~~p~~m~~i~~G~~~ai~ECq~QF~~~RWNCs~~~~~~~f~~~~~~~gtrE~ 69 (310)
T PF00110_consen 5 IPGLTKRQRRLCRRNPDLMPSIAEGAKMAIEECQHQFRNRRWNCSTVDNNPVFGPPILKKGTRET 69 (310)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHTTTSSS-----T-THHHH-TT--S--HHH
T ss_pred cccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccCcccc
Confidence 7899999999999999999999999999999999999999999999876677888 999999996
No 3
>smart00097 WNT1 found in Wnt-1.
Probab=99.91 E-value=7.6e-25 Score=148.70 Aligned_cols=64 Identities=27% Similarity=0.447 Sum_probs=60.9
Q ss_pred CCCCcHHHHhHhhcccchHHHHHHHHHHHHHHHHHhhCcCCCCCCCCCCCCCcccccccccccC
Q psy11169 2 EYGFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLTPDLITEFVDH 65 (66)
Q Consensus 2 ~~~l~~~Q~~lC~~~~~~~~~v~~G~~~a~~eCq~qF~~~RWNCs~~~~~~~~~~~l~~g~kE~ 65 (66)
++||++.|+++|+++|++|++|++|+++|++|||+||+++|||||.....+.|++++.+|+||+
T Consensus 2 ~~~l~~~Q~~~C~~~~~~~~~v~~g~~~ai~ECq~QF~~~rWNCs~~~~~~~~~~~l~~~trEt 65 (305)
T smart00097 2 LPGLSRRQRRLCRANPDVMISVAEGAQEGIEECQHQFRFRRWNCSTLDNASVFGKVLRQGTRET 65 (305)
T ss_pred CcccCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCcccccccccccchH
Confidence 6799999999999999999999999999999999999999999998766678999999999996
No 4
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=84.01 E-value=1.3 Score=34.03 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhCcC
Q psy11169 19 IMPHVTKAAYLAANTCTTLFQDR 41 (66)
Q Consensus 19 ~~~~v~~G~~~a~~eCq~qF~~~ 41 (66)
.|.+|.+++...++||++|||..
T Consensus 561 ~m~AVg~aA~~mVeEVRRQFrei 583 (730)
T PLN02277 561 ACAAVGRTAQEVVNEVRRQFAER 583 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 58899999999999999999875
No 5
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=83.58 E-value=1.4 Score=33.77 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhCcC
Q psy11169 19 IMPHVTKAAYLAANTCTTLFQDR 41 (66)
Q Consensus 19 ~~~~v~~G~~~a~~eCq~qF~~~ 41 (66)
.|.+|.+++..-++||++|||..
T Consensus 529 ~m~AVg~aA~~mV~EVRRQFrei 551 (697)
T TIGR01104 529 TMKSVGRAALKMVEEVRRQFNTI 551 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 58899999999999999999875
No 6
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=80.81 E-value=2.1 Score=32.63 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhCcCC
Q psy11169 19 IMPHVTKAAYLAANTCTTLFQDRR 42 (66)
Q Consensus 19 ~~~~v~~G~~~a~~eCq~qF~~~R 42 (66)
.|.+|.+++...++|+++|||...
T Consensus 504 ~m~AVg~aA~~mV~EVRrQFre~p 527 (666)
T PRK00733 504 AMTAVGRAAGAMVEEVRRQFREIP 527 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 578999999999999999998763
No 7
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=79.08 E-value=2.5 Score=32.76 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhCcC
Q psy11169 19 IMPHVTKAAYLAANTCTTLFQDR 41 (66)
Q Consensus 19 ~~~~v~~G~~~a~~eCq~qF~~~ 41 (66)
.|.+|.+++..-++|+++|||..
T Consensus 592 ~m~AVg~aA~~mV~EVRRQFrei 614 (765)
T PLN02255 592 TMKSVGSAALKMVEEVRRQFNTI 614 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 58899999999999999999875
No 8
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=78.04 E-value=2.4 Score=32.44 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhCcCC
Q psy11169 19 IMPHVTKAAYLAANTCTTLFQDRR 42 (66)
Q Consensus 19 ~~~~v~~G~~~a~~eCq~qF~~~R 42 (66)
.|.+|.+++..-++|+++|||..+
T Consensus 529 ~m~aVg~aA~~mV~EvRrQFre~p 552 (682)
T PF03030_consen 529 TMKAVGRAAGKMVEEVRRQFREIP 552 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 578999999999999999998863
No 9
>COG3728 XtmA Phage terminase, small subunit [DNA replication, recombination, and repair]
Probab=69.26 E-value=2.1 Score=27.71 Aligned_cols=27 Identities=7% Similarity=0.145 Sum_probs=17.9
Q ss_pred CCcHHHHhHhhcccchHHHHHHHHHHH
Q psy11169 4 GFSKGQTKICKGWTEIMPHVTKAAYLA 30 (66)
Q Consensus 4 ~l~~~Q~~lC~~~~~~~~~v~~G~~~a 30 (66)
-||.+|++||..|-..-.+-..|++.|
T Consensus 2 ~Lt~kQrrF~~eyi~~~naT~sA~~AG 28 (179)
T COG3728 2 ELTEKQRRFVDEYIKTFNATQSAIKAG 28 (179)
T ss_pred cccHHHHHHHHHHHHcccHhHHHHHhc
Confidence 389999999988765544444444433
No 10
>KOG4114|consensus
Probab=63.19 E-value=12 Score=20.82 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=25.9
Q ss_pred HhHhhcccch--HHHHHHHHHHHHHHHHHhhCc
Q psy11169 10 TKICKGWTEI--MPHVTKAAYLAANTCTTLFQD 40 (66)
Q Consensus 10 ~~lC~~~~~~--~~~v~~G~~~a~~eCq~qF~~ 40 (66)
-+-|..+|++ +|..-.+...+..+|+.+.-+
T Consensus 29 ~reCldn~~~~~vPeeC~al~~af~dCKRslvD 61 (73)
T KOG4114|consen 29 PRECLDNPELKDVPEECIALMKAFLDCKRSLVD 61 (73)
T ss_pred HHHHhcCCccccCcHHHHHHHHHHHHHHHHHHH
Confidence 4569999998 888888999999999988643
No 11
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=57.29 E-value=9.7 Score=14.88 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHH
Q psy11169 18 EIMPHVTKAAYLA 30 (66)
Q Consensus 18 ~~~~~v~~G~~~a 30 (66)
++|.++.++.+.+
T Consensus 1 gvmdsllealqtg 13 (15)
T PF06345_consen 1 GVMDSLLEALQTG 13 (15)
T ss_dssp -HHHHHHHHHHHS
T ss_pred CcHHHHHHHHHcc
Confidence 4678888877653
No 12
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=53.12 E-value=8.8 Score=18.64 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=16.4
Q ss_pred CCCcHHH-----HhHhhcccchHHHHHH
Q psy11169 3 YGFSKGQ-----TKICKGWTEIMPHVTK 25 (66)
Q Consensus 3 ~~l~~~Q-----~~lC~~~~~~~~~v~~ 25 (66)
.+|.+.| .++|.+||++-..|..
T Consensus 8 E~Ld~~qL~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 8 ETLDKDQLQSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp TTS-HHHHHHHHHHHHHHSTHHHHHHHT
T ss_pred HHcCHHHHHHHHHHHHHhChhHHHHHHh
Confidence 4555555 4589999999888764
No 13
>PF03592 Terminase_2: Terminase small subunit ; InterPro: IPR005335 Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].; GO: 0006323 DNA packaging; PDB: 3ZQP_B 2CMP_A 3ZQO_C 3ZQN_B 3ZQQ_B 3ZQM_D.
Probab=50.52 E-value=5.3 Score=24.00 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=11.0
Q ss_pred CcHHHHhHhhcccch
Q psy11169 5 FSKGQTKICKGWTEI 19 (66)
Q Consensus 5 l~~~Q~~lC~~~~~~ 19 (66)
||++|+.||..+..-
T Consensus 1 LT~kQ~~F~~~Yl~~ 15 (144)
T PF03592_consen 1 LTPKQKRFVDEYLKD 15 (144)
T ss_dssp --HHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 799999999887664
No 14
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
Probab=49.07 E-value=27 Score=23.35 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=26.9
Q ss_pred CCcHHHHhHhhcccchHHHHHHHHHHHHHH
Q psy11169 4 GFSKGQTKICKGWTEIMPHVTKAAYLAANT 33 (66)
Q Consensus 4 ~l~~~Q~~lC~~~~~~~~~v~~G~~~a~~e 33 (66)
|+|+.|+=+=-+-|-.++.|..|+|.+.-.
T Consensus 128 GMT~~Q~L~~VelPlAlPvIlaGIR~a~V~ 157 (221)
T COG1174 128 GMTRWQRLLKVELPLALPVILAGIRTAVVI 157 (221)
T ss_pred CCCHHHHHHHhhccccHHHHHhhHHHHHHH
Confidence 789999999999999999999999988643
No 15
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=42.42 E-value=61 Score=19.24 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=21.1
Q ss_pred CCCcHHHHhHhhcccchHHHHHHHHHHHHHHHHHhhC
Q psy11169 3 YGFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQ 39 (66)
Q Consensus 3 ~~l~~~Q~~lC~~~~~~~~~v~~G~~~a~~eCq~qF~ 39 (66)
||-|+.|.. .|+.|+..||.+=.+|-+
T Consensus 18 pGQTKEQTK----------LIAqGIeKGIa~YKKQqK 44 (103)
T PF11169_consen 18 PGQTKEQTK----------LIAQGIEKGIAEYKKQQK 44 (103)
T ss_pred CCCCHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 566666655 799999999999887753
No 16
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=37.60 E-value=18 Score=20.16 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhC
Q psy11169 24 TKAAYLAANTCTTLFQ 39 (66)
Q Consensus 24 ~~G~~~a~~eCq~qF~ 39 (66)
.-|+=+|..+|++.|+
T Consensus 60 G~G~G~aY~~c~~~f~ 75 (75)
T PF04418_consen 60 GFGIGMAYSECQRDFN 75 (75)
T ss_pred ccccchhHHHHHHhcC
Confidence 4467788999999884
No 17
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=34.80 E-value=68 Score=16.31 Aligned_cols=10 Identities=30% Similarity=0.112 Sum_probs=7.6
Q ss_pred CCCCcHHHHh
Q psy11169 2 EYGFSKGQTK 11 (66)
Q Consensus 2 ~~~l~~~Q~~ 11 (66)
.+|.+..|++
T Consensus 9 ~~Grs~EqK~ 18 (60)
T PRK02289 9 FEGRSQEQKN 18 (60)
T ss_pred CCCCCHHHHH
Confidence 4678888877
No 18
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.91 E-value=1e+02 Score=19.36 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=27.1
Q ss_pred HhHhhcccchHH-HHHHHHHHHHHHHHHhhCcCC
Q psy11169 10 TKICKGWTEIMP-HVTKAAYLAANTCTTLFQDRR 42 (66)
Q Consensus 10 ~~lC~~~~~~~~-~v~~G~~~a~~eCq~qF~~~R 42 (66)
+.++.+|++++. .+.+|+++|.+-++.-+.+.+
T Consensus 70 ~~l~eK~~s~v~~~~~~gi~~af~~~~~l~~~~~ 103 (187)
T PF12830_consen 70 KELHEKHESLVESRYSEGIRLAFDYQRRLSSDSR 103 (187)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 457889999887 589999999999988776654
No 19
>PF06514 PsbU: Photosystem II 12 kDa extrinsic protein (PsbU); InterPro: IPR010527 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII extrinsic protein PsbU, which forms part of the OEC in cyanobacteria and red algae. PsbU acts to stabilise the oxygen-evolving machinery of PSII against heat-induced inactivation, which is crucial for cellular thermo-tolerance [].; GO: 0015979 photosynthesis, 0042549 photosystem II stabilization, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 3BZ1_U 3KZI_U 3PRQ_U 2AXT_u 3BZ2_U 4FBY_U 3PRR_U 1S5L_U 3A0H_U 3ARC_U ....
Probab=27.97 E-value=41 Score=19.63 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=12.1
Q ss_pred CCCCcHHHHhHhhcccc
Q psy11169 2 EYGFSKGQTKICKGWTE 18 (66)
Q Consensus 2 ~~~l~~~Q~~lC~~~~~ 18 (66)
|+|||.+|+.+-.++-+
T Consensus 54 ipgLse~qK~~lk~~~~ 70 (93)
T PF06514_consen 54 IPGLSERQKALLKKYED 70 (93)
T ss_dssp STT--HHHHHHHHHHGG
T ss_pred ccCCCHHHHHHHHHHhc
Confidence 68999999998877655
No 20
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=26.72 E-value=19 Score=20.77 Aligned_cols=8 Identities=38% Similarity=1.016 Sum_probs=5.6
Q ss_pred CcCCCCCC
Q psy11169 39 QDRRWNCS 46 (66)
Q Consensus 39 ~~~RWNCs 46 (66)
.+++|||.
T Consensus 81 ~w~qW~c~ 88 (89)
T PF08444_consen 81 GWHQWNCV 88 (89)
T ss_pred cchhceee
Confidence 36778884
No 21
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=25.79 E-value=44 Score=19.47 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=21.9
Q ss_pred CCcHHHHhHhhc-----------ccchHHHHHHH--HHHHHHHHHHhhCcC
Q psy11169 4 GFSKGQTKICKG-----------WTEIMPHVTKA--AYLAANTCTTLFQDR 41 (66)
Q Consensus 4 ~l~~~Q~~lC~~-----------~~~~~~~v~~G--~~~a~~eCq~qF~~~ 41 (66)
-||+.|+..|.+ .++.+..-.+| ......+++.+|...
T Consensus 30 ~LT~eQre~~mQaVm~yq~~~n~~~e~~ti~~~G~I~~ksK~~lk~~f~~~ 80 (93)
T PF07023_consen 30 ALTPEQRESCMQAVMLYQARHNLPEEHRTIGADGYIDMKSKAELKKQFSSD 80 (93)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHcccCCCCEEccccHHHHHHhcccc
Confidence 499999999965 11111111112 234556778888766
No 22
>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit. The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.
Probab=23.86 E-value=70 Score=23.62 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=29.5
Q ss_pred HhhcccchHHHH-HHHHHHHHHHHHHhhCcCCCCCCCCC------CCCCccccccccc
Q psy11169 12 ICKGWTEIMPHV-TKAAYLAANTCTTLFQDRRWNCSSLF------LTPKLTPDLITEF 62 (66)
Q Consensus 12 lC~~~~~~~~~v-~~G~~~a~~eCq~qF~~~RWNCs~~~------~~~~~~~~l~~g~ 62 (66)
+|.-.|+.+|.+ .+++..|+..+.. =||+.+. .-.+|-|+|.+|+
T Consensus 42 vclg~PG~LPvlN~~av~~Ai~~~~a------Lnc~i~~~~s~FdRK~YfYpDlPkGY 93 (478)
T TIGR00133 42 VCLGLPGALPVLNEEAVKKAIKLALA------LNSQINQPISVFDRKHYFYPDLPKGY 93 (478)
T ss_pred cccCCCCCCCccCHHHHHHHHHHHHH------cCCEecCcceEEeccccccCCCCCCc
Confidence 688899988876 5556666666654 3887333 2245666776665
No 23
>PF08748 DUF1789: Domain of unknown function (DUF1789); InterPro: IPR014859 This entry represents a putative uncharacterised protein found in phage-related conserved hypothetical protein from Bordetella.
Probab=23.51 E-value=1.4e+02 Score=18.18 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=19.8
Q ss_pred hHhhcccchHHHHHHHHHHHHHH
Q psy11169 11 KICKGWTEIMPHVTKAAYLAANT 33 (66)
Q Consensus 11 ~lC~~~~~~~~~v~~G~~~a~~e 33 (66)
.|+..+|....+|.++...++.+
T Consensus 101 ~L~~~yp~a~~AI~~aY~~~l~~ 123 (128)
T PF08748_consen 101 LLVDNYPGAAEAIVDAYYQALMG 123 (128)
T ss_pred HHHHhCccHHHHHHHHHHHHHHH
Confidence 48899999999999998887754
No 24
>PF08688 ASD1: Apx/Shroom domain ASD1; InterPro: IPR014800 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. This region is found in the actin binding protein Shroom. ASD1 has been implicated directly in F-actin binding.
Probab=22.55 E-value=44 Score=21.70 Aligned_cols=21 Identities=24% Similarity=0.109 Sum_probs=19.1
Q ss_pred CCcHHHHhHhhcccchHHHHH
Q psy11169 4 GFSKGQTKICKGWTEIMPHVT 24 (66)
Q Consensus 4 ~l~~~Q~~lC~~~~~~~~~v~ 24 (66)
-||..|+..|...|+=|.-|.
T Consensus 129 RlTaEQKkrSYSEPEKmneVG 149 (182)
T PF08688_consen 129 RLTAEQKKRSYSEPEKMNEVG 149 (182)
T ss_pred cCCHHHhhhccCCchhhhhcc
Confidence 499999999999999999875
No 25
>KOG3838|consensus
Probab=22.20 E-value=59 Score=23.99 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhCcCCC
Q psy11169 24 TKAAYLAANTCTTLFQDRRW 43 (66)
Q Consensus 24 ~~G~~~a~~eCq~qF~~~RW 43 (66)
.+|+..++.-|++-|||...
T Consensus 169 ~DGasQ~LssCqrDFRNkPy 188 (497)
T KOG3838|consen 169 GDGASQGLSSCQRDFRNKPY 188 (497)
T ss_pred CccHHHHHHHhhHHhccCCC
Confidence 47999999999999999865
No 26
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=21.38 E-value=28 Score=18.35 Aligned_cols=8 Identities=50% Similarity=1.207 Sum_probs=6.3
Q ss_pred cCCCCCCC
Q psy11169 40 DRRWNCSS 47 (66)
Q Consensus 40 ~~RWNCs~ 47 (66)
-.||.|++
T Consensus 28 CGRWaC~s 35 (57)
T PF14445_consen 28 CGRWACNS 35 (57)
T ss_pred hchhhhhh
Confidence 47999975
No 27
>COG3139 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.28 E-value=60 Score=18.69 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=10.4
Q ss_pred CCcHHHHhHhhc
Q psy11169 4 GFSKGQTKICKG 15 (66)
Q Consensus 4 ~l~~~Q~~lC~~ 15 (66)
.||..|+..|.+
T Consensus 32 ~LtqeQke~clQ 43 (90)
T COG3139 32 ALTQEQKENCLQ 43 (90)
T ss_pred cCCHHHHHHHHH
Confidence 489999999976
No 28
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=21.15 E-value=93 Score=18.61 Aligned_cols=23 Identities=4% Similarity=-0.023 Sum_probs=17.1
Q ss_pred cchHHHH-HHHHHHHHHHHHHhhC
Q psy11169 17 TEIMPHV-TKAAYLAANTCTTLFQ 39 (66)
Q Consensus 17 ~~~~~~v-~~G~~~a~~eCq~qF~ 39 (66)
|+++..+ ..|+..-+.|.|+||.
T Consensus 104 ~~~~~kLk~AGidkV~~E~QkQld 127 (134)
T PF12010_consen 104 PEFNEKLKAAGIDKVIAELQKQLD 127 (134)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHH
Confidence 3445554 5679999999999984
No 29
>PHA03356 tegument protein UL11; Provisional
Probab=20.67 E-value=95 Score=17.91 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=11.7
Q ss_pred cCCCCCCCCCCCCCcccc
Q psy11169 40 DRRWNCSSLFLTPKLTPD 57 (66)
Q Consensus 40 ~~RWNCs~~~~~~~~~~~ 57 (66)
.++|.|+.....+.+.+.
T Consensus 74 ~r~~s~~g~~p~~~~~p~ 91 (93)
T PHA03356 74 TRHWSPSGARPAPTFPPP 91 (93)
T ss_pred ccccCCCCCCCCCCCCCC
Confidence 678999876554455443
No 30
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=20.60 E-value=1.6e+02 Score=16.13 Aligned_cols=9 Identities=22% Similarity=0.157 Sum_probs=5.3
Q ss_pred CCCcHHHHh
Q psy11169 3 YGFSKGQTK 11 (66)
Q Consensus 3 ~~l~~~Q~~ 11 (66)
.|++.+|++
T Consensus 42 Tgl~~k~Qr 50 (70)
T TIGR00165 42 TGTSAKYQR 50 (70)
T ss_pred CCcCHHHHH
Confidence 456666655
Done!