Query psy11169
Match_columns 66
No_of_seqs 104 out of 480
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:49:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 99.7 4.6E-19 1.6E-23 120.0 2.3 56 9-65 4-64 (316)
2 2cmp_A G1P, terminase small su 75.8 0.65 2.2E-05 24.3 0.3 17 3-19 7-23 (63)
3 4a01_A Proton pyrophosphatase; 71.0 2.9 9.9E-05 31.4 2.8 23 19-41 593-615 (766)
4 4av3_A K(+)-stimulated pyropho 67.7 1.8 6.2E-05 32.3 1.1 23 19-41 571-593 (735)
5 3zqp_A Terminase small subunit 61.4 1.7 5.8E-05 26.7 0.0 18 3-20 23-40 (164)
6 4a1s_C RE60102P, INSC; cell cy 47.1 5.5 0.00019 18.8 0.5 9 39-47 15-23 (40)
7 2lqx_A Trypsin inhibitor BWI-2 44.7 6.6 0.00022 18.4 0.0 17 28-44 5-21 (41)
8 3ej9_B Beta-subunit of trans-3 33.3 39 0.0013 18.0 2.5 25 1-31 7-31 (70)
9 1dqe_A PBP, pheromone-binding 26.0 36 0.0012 19.4 1.8 22 17-38 2-23 (137)
10 3onr_A Protein transport prote 25.8 50 0.0017 17.5 2.2 22 22-43 17-38 (72)
11 2fqm_A Phosphoprotein, P prote 25.6 46 0.0016 17.7 2.0 23 3-28 26-48 (75)
12 1wo9_A HI-1, trypsin inhibitor 23.5 20 0.00068 16.3 0.3 9 40-48 22-30 (35)
13 2wcj_A General odorant-binding 23.1 39 0.0013 19.4 1.5 22 17-38 2-23 (141)
14 2cc6_A VNG1446H, dodecin; flav 22.1 39 0.0013 17.7 1.3 22 22-43 15-36 (68)
15 2ux9_A Dodecin; flavoprotein; 21.1 42 0.0014 17.6 1.3 22 22-43 17-38 (69)
16 2yiz_A Dodecin; flavoprotein, 20.4 44 0.0015 17.5 1.3 22 22-43 17-38 (69)
17 2vxa_A Dodecin; flavoprotein, 20.1 45 0.0015 17.7 1.3 22 22-43 18-39 (72)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=99.74 E-value=4.6e-19 Score=120.02 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=42.6
Q ss_pred HHhHhhc----ccchHHHHHHHHHHHHHHHHHhhCcCCCCCCCCCCCCCccc-ccccccccC
Q psy11169 9 QTKICKG----WTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLTP-DLITEFVDH 65 (66)
Q Consensus 9 Q~~lC~~----~~~~~~~v~~G~~~a~~eCq~qF~~~RWNCs~~~~~~~~~~-~l~~g~kE~ 65 (66)
|..||.. +|++|++|.+|+++||+|||+||+++|||||... .+.|++ +|.+|+||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~v~~Ga~~~i~ECq~QFr~~RWNCs~~~-~~~~~~~~l~~g~REt 64 (316)
T 4f0a_B 4 VNNFLMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPEST-LQLATHNGLRSATRET 64 (316)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCCT-THHHHCTTCCSCCHHH
T ss_pred HHHHHHhCCccChHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc-cccCCcccccCCCHHH
Confidence 4556644 5679999999999999999999999999999643 334565 689999996
No 2
>2cmp_A G1P, terminase small subunit; DNA packaging, DNA binding DO; 1.58A {Bacteriophage SF6}
Probab=75.80 E-value=0.65 Score=24.31 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=13.2
Q ss_pred CCCcHHHHhHhhcccch
Q psy11169 3 YGFSKGQTKICKGWTEI 19 (66)
Q Consensus 3 ~~l~~~Q~~lC~~~~~~ 19 (66)
..||++|+.||..+..-
T Consensus 7 ~~LT~kQ~~F~~~Yi~~ 23 (63)
T 2cmp_A 7 PKLSPKQERFIEEYFIN 23 (63)
T ss_dssp -CCCHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHhc
Confidence 36999999999886443
No 3
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=71.02 E-value=2.9 Score=31.37 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhCcC
Q psy11169 19 IMPHVTKAAYLAANTCTTLFQDR 41 (66)
Q Consensus 19 ~~~~v~~G~~~a~~eCq~qF~~~ 41 (66)
.|.+|.+++...++|+++|||..
T Consensus 593 tm~AVg~AA~~mV~EVRRQFrei 615 (766)
T 4a01_A 593 TMKSVGSAALKMVEEVRRQFNTI 615 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999874
No 4
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=67.66 E-value=1.8 Score=32.30 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhCcC
Q psy11169 19 IMPHVTKAAYLAANTCTTLFQDR 41 (66)
Q Consensus 19 ~~~~v~~G~~~a~~eCq~qF~~~ 41 (66)
.|.+|.+++...++|+++|||..
T Consensus 571 tm~AVgrAA~~mV~EVRRQFrei 593 (735)
T 4av3_A 571 LISAVTKAAMKMVDEIRRQAREI 593 (735)
T ss_dssp HHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 48899999999999999999864
No 5
>3zqp_A Terminase small subunit; DNA-binding protein, DNA packaging; 3.00A {Bacillus phage SF6} PDB: 3zqq_A
Probab=61.38 E-value=1.7 Score=26.75 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=0.0
Q ss_pred CCCcHHHHhHhhcccchH
Q psy11169 3 YGFSKGQTKICKGWTEIM 20 (66)
Q Consensus 3 ~~l~~~Q~~lC~~~~~~~ 20 (66)
+.||++|+.||..|..-.
T Consensus 23 ~~LT~KQ~~F~~eYi~~~ 40 (164)
T 3zqp_A 23 PKLSPKQERFIEEYFIND 40 (164)
T ss_dssp ------------------
T ss_pred ccCCHHHHHHHHHHHhcC
Confidence 469999999999877654
No 6
>4a1s_C RE60102P, INSC; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=47.05 E-value=5.5 Score=18.84 Aligned_cols=9 Identities=22% Similarity=0.800 Sum_probs=6.5
Q ss_pred CcCCCCCCC
Q psy11169 39 QDRRWNCSS 47 (66)
Q Consensus 39 ~~~RWNCs~ 47 (66)
...||||..
T Consensus 15 seQRW~~e~ 23 (40)
T 4a1s_C 15 SEQRWAGEP 23 (40)
T ss_dssp HHHTTCCCC
T ss_pred HhccccCCh
Confidence 356999963
No 7
>2lqx_A Trypsin inhibitor BWI-2C; helical hairpin, hydrolase inhibitor; NMR {Fagopyrum esculentum}
Probab=44.72 E-value=6.6 Score=18.40 Aligned_cols=17 Identities=18% Similarity=0.595 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhCcCCCC
Q psy11169 28 YLAANTCTTLFQDRRWN 44 (66)
Q Consensus 28 ~~a~~eCq~qF~~~RWN 44 (66)
+.-++|||.--+-.||.
T Consensus 5 qqeleecqnvcrmkrws 21 (41)
T 2lqx_A 5 QQELEECQNVCRMKRWS 21 (41)
Confidence 34578999999999994
No 8
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=33.26 E-value=39 Score=17.95 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=17.4
Q ss_pred CCCCCcHHHHhHhhcccchHHHHHHHHHHHH
Q psy11169 1 MEYGFSKGQTKICKGWTEIMPHVTKAAYLAA 31 (66)
Q Consensus 1 ~~~~l~~~Q~~lC~~~~~~~~~v~~G~~~a~ 31 (66)
|+.|.|..|++ .++..|.+++-.++
T Consensus 7 i~EGRT~EQK~------~lI~~VT~a~~esl 31 (70)
T 3ej9_B 7 IATGLSVARKQ------QLIRDVIDVTNKSI 31 (70)
T ss_dssp EESCCCHHHHH------HHHHHHHHHHHHHH
T ss_pred EecCCCHHHHH------HHHHHHHHHHHHHc
Confidence 56788999887 45666666665554
No 9
>1dqe_A PBP, pheromone-binding protein; helical bundle, transport protein; HET: BOM; 1.80A {Bombyx mori} SCOP: a.39.2.1 PDB: 1gm0_A 1ls8_A 2fjy_A 2p71_A* 2p70_A* 1xfr_A
Probab=25.98 E-value=36 Score=19.39 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhh
Q psy11169 17 TEIMPHVTKAAYLAANTCTTLF 38 (66)
Q Consensus 17 ~~~~~~v~~G~~~a~~eCq~qF 38 (66)
.++|..+..+++....+|..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~C~~E~ 23 (137)
T 1dqe_A 2 QEVMKNLSLNFGKALDECKKEM 23 (137)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999874
No 10
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=25.78 E-value=50 Score=17.49 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhCcCCC
Q psy11169 22 HVTKAAYLAANTCTTLFQDRRW 43 (66)
Q Consensus 22 ~v~~G~~~a~~eCq~qF~~~RW 43 (66)
++-+|++.|+.+..+..++=+|
T Consensus 17 S~edAi~nAi~~AskTl~ni~~ 38 (72)
T 3onr_A 17 SWEQAAAEAVQRARDSVDDIRV 38 (72)
T ss_dssp CHHHHHHHHHHHHHHHCSCCCE
T ss_pred CHHHHHHHHHHHHHhcccCCeE
Confidence 5778999999999999999888
No 11
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=25.58 E-value=46 Score=17.73 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=16.0
Q ss_pred CCCcHHHHhHhhcccchHHHHHHHHH
Q psy11169 3 YGFSKGQTKICKGWTEIMPHVTKAAY 28 (66)
Q Consensus 3 ~~l~~~Q~~lC~~~~~~~~~v~~G~~ 28 (66)
.|||..|+. ++-..+++|.+.++
T Consensus 26 ~gLt~~Q~~---QW~~TIeav~qSak 48 (75)
T 2fqm_A 26 EGLSGEQKS---QWMLTIKAVVQSAK 48 (75)
T ss_dssp SSCCHHHHH---HHHHHHHHHHHHHH
T ss_pred CCccHHHHH---HHHHHHHHHHhhhc
Confidence 389999987 55566677766554
No 12
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1
Probab=23.54 E-value=20 Score=16.33 Aligned_cols=9 Identities=22% Similarity=0.811 Sum_probs=6.9
Q ss_pred cCCCCCCCC
Q psy11169 40 DRRWNCSSL 48 (66)
Q Consensus 40 ~~RWNCs~~ 48 (66)
++.|+|+..
T Consensus 22 ~g~W~CT~~ 30 (35)
T 1wo9_A 22 TGIWGCTRK 30 (35)
T ss_dssp TSCEECCCS
T ss_pred CCEEcCCCC
Confidence 678999853
No 13
>2wcj_A General odorant-binding protein 1; transport protein, olfaction, transport, disulfide bond, insect pheremone, sensory transduction; HET: M21; 1.40A {Bombyx mori} PDB: 2wc6_A* 2wch_A* 2wck_A 2wcl_A* 2wcm_A* 2wc5_A*
Probab=23.09 E-value=39 Score=19.41 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhh
Q psy11169 17 TEIMPHVTKAAYLAANTCTTLF 38 (66)
Q Consensus 17 ~~~~~~v~~G~~~a~~eCq~qF 38 (66)
.++|..+..+++....+|..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~C~~E~ 23 (141)
T 2wcj_A 2 AEVMSHVTAHFGKTLEECREES 23 (141)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5789999999999999999986
No 14
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=22.08 E-value=39 Score=17.69 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhCcCCC
Q psy11169 22 HVTKAAYLAANTCTTLFQDRRW 43 (66)
Q Consensus 22 ~v~~G~~~a~~eCq~qF~~~RW 43 (66)
++-+|++.|+.+..+..++=+|
T Consensus 15 S~edAi~nAi~~AskTl~ni~~ 36 (68)
T 2cc6_A 15 SFTAAADDAIDRAEDTLDNVVW 36 (68)
T ss_dssp CHHHHHHHHHHHHHHHCSCEEE
T ss_pred CHHHHHHHHHHHHHhcccCCeE
Confidence 5778999999999999988887
No 15
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=21.06 E-value=42 Score=17.63 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhCcCCC
Q psy11169 22 HVTKAAYLAANTCTTLFQDRRW 43 (66)
Q Consensus 22 ~v~~G~~~a~~eCq~qF~~~RW 43 (66)
++-+|++.|+.+..+..++=+|
T Consensus 17 S~edAi~nAi~~AskTl~ni~~ 38 (69)
T 2ux9_A 17 GLEAAIQAALARARKTLRHLDW 38 (69)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHHHhcccCCeE
Confidence 5778999999999999888777
No 16
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=20.41 E-value=44 Score=17.54 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhCcCCC
Q psy11169 22 HVTKAAYLAANTCTTLFQDRRW 43 (66)
Q Consensus 22 ~v~~G~~~a~~eCq~qF~~~RW 43 (66)
++-+|++.|+.+..+..++=+|
T Consensus 17 S~edAi~nAi~~AskTl~ni~~ 38 (69)
T 2yiz_A 17 GVDAAIQGGLARAAQTMRALDW 38 (69)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHHHhcccCCeE
Confidence 5778999999999999888777
No 17
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=20.14 E-value=45 Score=17.66 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhCcCCC
Q psy11169 22 HVTKAAYLAANTCTTLFQDRRW 43 (66)
Q Consensus 22 ~v~~G~~~a~~eCq~qF~~~RW 43 (66)
++-+|++.|+.+..+..++=+|
T Consensus 18 S~edAi~nAi~~AskTl~ni~~ 39 (72)
T 2vxa_A 18 GIEEAVNNAIARAGETLRHLRW 39 (72)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHHHhhccCCeE
Confidence 5778999999999999988777
Done!