Query psy11169
Match_columns 66
No_of_seqs 104 out of 480
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 19:49:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11169.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11169hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 32.3 2.5 0.00018 20.8 -1.0 11 32-42 53-63 (70)
2 d2fqma1 d.378.1.1 (A:107-171) 28.4 19 0.0014 17.5 2.0 23 3-28 22-44 (65)
3 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 23.2 43 0.0031 16.3 3.0 23 2-30 8-31 (76)
4 d1rcua_ c.129.1.1 (A:) Hypothe 21.6 19 0.0013 20.1 1.4 15 16-30 44-58 (170)
5 d2ux9a1 d.230.2.1 (A:2-67) Unc 20.2 21 0.0015 17.4 1.3 22 22-43 16-37 (66)
6 d1s0ya_ d.80.1.1 (A:) Trans-3- 19.3 46 0.0033 15.1 2.6 11 1-11 7-17 (62)
7 d2cc6a1 d.230.2.1 (A:2-65) Fla 19.3 23 0.0017 17.1 1.3 22 22-43 14-35 (64)
8 d2jpoa1 a.39.2.1 (A:1-142) Mot 18.6 14 0.0011 19.9 0.4 21 17-37 2-22 (142)
9 d1dqea_ a.39.2.1 (A:) Moth phe 18.3 29 0.0021 18.4 1.7 21 17-37 2-22 (137)
10 d2fi0a1 a.248.1.1 (A:3-81) Hyp 17.4 18 0.0013 18.1 0.6 20 5-24 9-28 (79)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=32.31 E-value=2.5 Score=20.83 Aligned_cols=11 Identities=18% Similarity=0.851 Sum_probs=7.3
Q ss_pred HHHHHhhCcCC
Q psy11169 32 NTCTTLFQDRR 42 (66)
Q Consensus 32 ~eCq~qF~~~R 42 (66)
+||.-|.+++|
T Consensus 53 decevq~knr~ 63 (70)
T d2vqca1 53 DECEVQYKNRK 63 (70)
T ss_dssp TTEEEEECSSC
T ss_pred chhheeeccch
Confidence 36777777665
No 2
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=28.37 E-value=19 Score=17.53 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=15.8
Q ss_pred CCCcHHHHhHhhcccchHHHHHHHHH
Q psy11169 3 YGFSKGQTKICKGWTEIMPHVTKAAY 28 (66)
Q Consensus 3 ~~l~~~Q~~lC~~~~~~~~~v~~G~~ 28 (66)
.|||..|+. +.-..+++|.+.++
T Consensus 22 ~gLt~~Q~~---QW~~TIeav~qSak 44 (65)
T d2fqma1 22 EGLSGEQKS---QWMLTIKAVVQSAK 44 (65)
T ss_dssp SSCCHHHHH---HHHHHHHHHHHHHH
T ss_pred CCcchHHHH---HHHHHHHHHHhhhc
Confidence 379999987 55556677666544
No 3
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=23.19 E-value=43 Score=16.32 Aligned_cols=23 Identities=9% Similarity=0.026 Sum_probs=13.2
Q ss_pred CCC-CcHHHHhHhhcccchHHHHHHHHHHH
Q psy11169 2 EYG-FSKGQTKICKGWTEIMPHVTKAAYLA 30 (66)
Q Consensus 2 ~~~-l~~~Q~~lC~~~~~~~~~v~~G~~~a 30 (66)
.+| ||..|++ .|+..|.+++..+
T Consensus 8 ~~g~lT~EQK~------~L~~~iT~a~~~~ 31 (76)
T d1gyxa_ 8 FPRELDEQQKA------ALAADITDVIIRH 31 (76)
T ss_dssp SCCCCCHHHHH------HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHH------HHHHHHHHHHHHH
Confidence 345 7888887 3444555544433
No 4
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Probab=21.58 E-value=19 Score=20.09 Aligned_cols=15 Identities=20% Similarity=0.167 Sum_probs=12.3
Q ss_pred ccchHHHHHHHHHHH
Q psy11169 16 WTEIMPHVTKAAYLA 30 (66)
Q Consensus 16 ~~~~~~~v~~G~~~a 30 (66)
++++|.++.+|++.+
T Consensus 44 ~~GlM~ava~ga~~~ 58 (170)
T d1rcua_ 44 RDGVMELVSQGVREA 58 (170)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHhc
Confidence 578999999998753
No 5
>d2ux9a1 d.230.2.1 (A:2-67) Uncharacterized protein TTHA1431 {Thermus thermophilus [TaxId: 274]}
Probab=20.21 E-value=21 Score=17.37 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhCcCCC
Q psy11169 22 HVTKAAYLAANTCTTLFQDRRW 43 (66)
Q Consensus 22 ~v~~G~~~a~~eCq~qF~~~RW 43 (66)
|+-+|++.|+.+-.+..++=+|
T Consensus 16 S~edAi~~Ai~~AskTl~ni~~ 37 (66)
T d2ux9a1 16 GLEAAIQAALARARKTLRHLDW 37 (66)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHhhhCccCcEE
Confidence 5778999999999999888777
No 6
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=19.34 E-value=46 Score=15.14 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=8.0
Q ss_pred CCCCCcHHHHh
Q psy11169 1 MEYGFSKGQTK 11 (66)
Q Consensus 1 ~~~~l~~~Q~~ 11 (66)
|.+|.|..|++
T Consensus 7 ~~~Grt~eqK~ 17 (62)
T d1s0ya_ 7 MRYGRTDEQKR 17 (62)
T ss_dssp EETTCCHHHHH
T ss_pred EeCCCCHHHHH
Confidence 35678888877
No 7
>d2cc6a1 d.230.2.1 (A:2-65) Flavin-binding protein dodecin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=19.26 E-value=23 Score=17.09 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhhCcCCC
Q psy11169 22 HVTKAAYLAANTCTTLFQDRRW 43 (66)
Q Consensus 22 ~v~~G~~~a~~eCq~qF~~~RW 43 (66)
|+-+|++.|+.+-.+..++=+|
T Consensus 14 S~edAi~~Ai~~AskTl~ni~~ 35 (64)
T d2cc6a1 14 SFTAAADDAIDRAEDTLDNVVW 35 (64)
T ss_dssp CHHHHHHHHHHHHHHHCSCEEE
T ss_pred CHHHHHHHHHHHHhhCccCceE
Confidence 5778999999999999988887
No 8
>d2jpoa1 a.39.2.1 (A:1-142) Moth pheromone-binding protein, PBP {Polyphemus moth (Antheraea polyphemus) [TaxId: 7120]}
Probab=18.65 E-value=14 Score=19.85 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=11.8
Q ss_pred cchHHHHHHHHHHHHHHHHHh
Q psy11169 17 TEIMPHVTKAAYLAANTCTTL 37 (66)
Q Consensus 17 ~~~~~~v~~G~~~a~~eCq~q 37 (66)
|++|.-+..+.+.++++|..+
T Consensus 2 ~~~~~~~~~~f~q~~~~C~~e 22 (142)
T d2jpoa1 2 PEIMKNLSNNFGKAMDQCKDE 22 (142)
T ss_dssp CSSCSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhh
Confidence 455555555556666666544
No 9
>d1dqea_ a.39.2.1 (A:) Moth pheromone-binding protein, PBP {Silk moth (Bombyx mori) [TaxId: 7091]}
Probab=18.29 E-value=29 Score=18.37 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHHHHHHHHHh
Q psy11169 17 TEIMPHVTKAAYLAANTCTTL 37 (66)
Q Consensus 17 ~~~~~~v~~G~~~a~~eCq~q 37 (66)
+++|+-+......++++|..+
T Consensus 2 ~~~~~~~~~~~~~~~e~C~~e 22 (137)
T d1dqea_ 2 QEVMKNLSLNFGKALDECKKE 22 (137)
T ss_dssp HHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhH
Confidence 456777777778888888765
No 10
>d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=17.35 E-value=18 Score=18.15 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=14.9
Q ss_pred CcHHHHhHhhcccchHHHHH
Q psy11169 5 FSKGQTKICKGWTEIMPHVT 24 (66)
Q Consensus 5 l~~~Q~~lC~~~~~~~~~v~ 24 (66)
++..-.++|.+||++.+.++
T Consensus 9 ~~~~V~eLi~~yPe~~~il~ 28 (79)
T d2fi0a1 9 VSIPVAEVVDKHPEVLEILV 28 (79)
T ss_dssp TTSBHHHHHHHCGGGHHHHT
T ss_pred CCCcHHHHHHHChHHHHHHH
Confidence 45566789999999877543
Done!