RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11169
         (66 letters)



>gnl|CDD|215724 pfam00110, wnt, wnt family.  Wnt genes have been identified in
          vertebrates and invertebrates but not in plants,
          unicellular eukaryotes or prokaryotes. In humans, 19
          WNT proteins are known. Because of their insolubility
          little is known about Wnt protein structure, but all
          have 23 or 24 Cys residues whose spacing is highly
          conserved. Signal transduction by Wnt proteins
          (including the Wnt/beta-catenin, the Wnt/Ca++, and the
          Wnt/polarity pathway) is mediated by receptors of the
          Frizzled and LDL-receptor-related protein (LRP)
          families.
          Length = 308

 Score = 53.8 bits (130), Expect = 2e-10
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 4  GFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLTPDL 58
          G S+ Q ++C+   ++M  V + A L    C   F++RRWNCS+L  +      L
Sbjct: 7  GLSRKQRRLCRRNPDVMASVGEGARLGIEECQHQFRNRRWNCSTLDSSSVFGKIL 61


>gnl|CDD|128408 smart00097, WNT1, found in Wnt-1. 
          Length = 305

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 4  GFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSL 48
          G S+ Q ++C+   ++M  V + A      C   F+ RRWNCS+L
Sbjct: 4  GLSRRQRRLCRANPDVMISVAEGAQEGIEECQHQFRFRRWNCSTL 48


>gnl|CDD|181231 PRK08114, PRK08114, cystathionine beta-lyase; Provisional.
          Length = 395

 Score = 26.2 bits (58), Expect = 1.3
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)

Query: 45  CSSLF---LTPKLTPDLITEFVDHF 66
            S LF   L  KLT + +  ++D+F
Sbjct: 307 SSGLFSFVLKKKLTDEQLANYLDNF 331


>gnl|CDD|183662 PRK12662, PRK12662, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 492

 Score = 24.7 bits (54), Expect = 3.5
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 3   YGFSKGQTKICKGWTEIMPHVTKA 26
           Y F   + + C    + MP +T A
Sbjct: 356 YHFGTTKLEDCLNLWKSMPKITLA 379


>gnl|CDD|238619 cd01294, DHOase, Dihydroorotase (DHOase) catalyzes the reversible
          interconversion of carbamoyl aspartate to
          dihydroorotate, a key reaction in the pyrimidine
          biosynthesis. In contrast to the large polyfunctional
          CAD proteins of higher organisms, this group of DHOases
          is monofunctional and mainly dimeric.
          Length = 335

 Score = 24.6 bits (54), Expect = 4.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 47 SLFLTPKLTPDLITE 61
          +L+LT   TP+ + E
Sbjct: 70 TLYLTENTTPEELRE 84


>gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein.
          Length = 734

 Score = 24.3 bits (53), Expect = 5.1
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 13  CKGWTEIMPHVTKAAYLA---ANTCTTLFQDRRW 43
           C+GW  I  +  + A+L     N    L Q +RW
Sbjct: 457 CEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRW 490


>gnl|CDD|172547 PRK14055, PRK14055, aromatic amino acid hydroxylase; Provisional.
          Length = 362

 Score = 24.2 bits (52), Expect = 5.9
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 26  AAYLAANTCTTLFQDRRWNCSSLFLTP-----KLTPDLITEFVDH 65
           + ++A +   +L QDR +  +S+  T       LTPDLI + + H
Sbjct: 161 SGFVAPHQYLSLLQDRYFPIASVMRTLDKDNFSLTPDLIHDLLGH 205


>gnl|CDD|132841 cd07202, cPLA2_Grp-IVC, Group IVC cytoplasmic phospholipase A2;
           catalytic domain; Ca-independent.  Group IVC cPLA2, a
           small 61 kDa protein, is a single domain alpha/beta
           hydrolase. It lacks a C2 domain; therefore, it has no
           Ca-dependence. Group IVC cPLA2 is also referred to as
           cPLA2-gamma. The cPLA2-gamma enzyme is predominantly
           found in cardiac and skeletal muscles, and to a lesser
           extent in the brain. Human cPLA2-gamma is approximately
           30% identical to cPLA2-alpha. The catalytic domain of
           cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes
           the sn-2-acyl ester bond of phospholipids to release
           arachidonic acid. At the active site, cPLA2 contains a
           serine nucleophile through which the catalytic mechanism
           is initiated. The active site is partially covered by a
           solvent-accessible flexible lid. cPLA2 displays
           interfacial activation as it exists in both "closed lid"
           and "open lid" forms. Movement of the cPLA2 lid possibly
           exposes a greater hydrophobic surface and the active
           site. cPLA2 belongs to the alpha-beta hydrolase family
           which is identified by a characteristic nucleophile
           elbow with a consensus sequence of Sm-X-Nu-Sm (Sm =
           small residue, X = any residue and Nu = nucleophile).
           Includes PLA2G4C protein from human and Pla2g4c protein
           from mouse.
          Length = 430

 Score = 24.4 bits (53), Expect = 5.9
 Identities = 9/37 (24%), Positives = 11/37 (29%)

Query: 2   EYGFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLF 38
           +      + K    W E  PH        A   TT F
Sbjct: 177 KDLSEWKERKTGDPWFEFTPHEAGYPLPGAFVSTTHF 213


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,204,397
Number of extensions: 207943
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 8
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)