RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11169
         (66 letters)



>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
          frizzled, fatty acylation, glycosylation, signaling
          protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
          laevis}
          Length = 316

 Score = 44.2 bits (103), Expect = 3e-07
 Identities = 11/53 (20%), Positives = 13/53 (24%)

Query: 6  SKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLTPDL 58
          +       K +      V   A      C   F   RWNC    L       L
Sbjct: 5  NNFLMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPESTLQLATHNGL 57


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,018,950
Number of extensions: 41730
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.2 bits)