BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11170
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96253|ATP5E_ARATH ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis
thaliana GN=At1g51650 PE=1 SV=3
Length = 70
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKP 80
YI YSNI A +R LK +A+A RE+ ++ W DGKP
Sbjct: 17 YISYSNICANIVRNCLKEPHKAEALTREKVHFSLSKWADGKP 58
>sp|Q06450|ATP5E_IPOBA ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas
PE=1 SV=2
Length = 70
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKP 80
YI YSN+ A +R LK +RA+A RE+ + W DGKP
Sbjct: 17 YITYSNLCANMVRNCLKEPYRAEALSREKVHFSFSKWVDGKP 58
>sp|Q41898|ATP5E_MAIZE ATP synthase subunit epsilon, mitochondrial OS=Zea mays PE=3 SV=1
Length = 70
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGK 79
YI YSNI A +R LK F+++A RE+ I+ W DGK
Sbjct: 18 YIGYSNICAALVRNCLKEPFKSEAASREKVHFSISKWTDGK 58
>sp|P56381|ATP5E_HUMAN ATP synthase subunit epsilon, mitochondrial OS=Homo sapiens
GN=ATP5E PE=1 SV=2
Length = 51
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITP 74
YI+YS I A+ +R ALKTEF+A+AEK S ++I
Sbjct: 12 YIRYSQICAKAVRDALKTEFKANAEKTSGSNVKIVK 47
>sp|P56382|ATP5E_MOUSE ATP synthase subunit epsilon, mitochondrial OS=Mus musculus
GN=Atp5e PE=3 SV=2
Length = 52
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITP 74
YI++S I A+ +R ALKTEF+A+AEK S I+I
Sbjct: 12 YIRFSQICAKAVRDALKTEFKANAEKTSGSSIKIVK 47
>sp|P05632|ATP5E_BOVIN ATP synthase subunit epsilon, mitochondrial OS=Bos taurus
GN=ATP5E PE=1 SV=4
Length = 51
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITP 74
YI+YS I A+ +R ALKTEF+A+A K S I+I
Sbjct: 12 YIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVK 47
>sp|Q5VTU8|AT5EL_HUMAN ATP synthase subunit epsilon-like protein, mitochondrial OS=Homo
sapiens GN=ATP5EP2 PE=3 SV=1
Length = 51
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITP 74
YI+YS I A+ +R ALKTEF+A+A+K + ++I
Sbjct: 12 YIRYSQICAKVVRDALKTEFKANAKKTSGNSVKIVK 47
>sp|P29418|ATP5E_RAT ATP synthase subunit epsilon, mitochondrial OS=Rattus norvegicus
GN=Atp5e PE=1 SV=2
Length = 51
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIR 71
YI++S I A+ +R ALKTEF+A+AEK + I+
Sbjct: 12 YIRFSQICAKAVRDALKTEFKANAEKTSGTSIK 44
>sp|Q75JK6|ATP5E_DICDI ATP synthase subunit epsilon, mitochondrial OS=Dictyostelium
discoideum GN=atp5e PE=3 SV=1
Length = 74
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGK 79
Y+QY+NI +R LK FRA A+ RE +++GK
Sbjct: 13 YLQYANICGTHVRNCLKEPFRAAAKNREGFISNTVMYQNGK 53
>sp|P22464|ANXB9_DROME Annexin-B9 OS=Drosophila melanogaster GN=AnnIX PE=2 SV=2
Length = 324
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 31 SAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPIRHYSEPLH 89
S + L + +++Y N++ + +A+K EF EK F+ I K I ++SE LH
Sbjct: 208 SYQQLRQIFLEYENLSGNDIEKAIKREFSGSVEK---GFLAIVKCCKSK-IDYFSERLH 262
>sp|P34539|ATP5E_CAEEL Putative ATP synthase subunit epsilon, mitochondrial
OS=Caenorhabditis elegans GN=R05D3.6 PE=3 SV=1
Length = 54
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 28 IQFSAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDGKPI 81
+ + A LN Y++YS IAA+ +R+ K K+ ++ ++ T W++GK +
Sbjct: 2 VAWRAAGLN--YVRYSQIAAQVVRQCTKGGANV---KKPQATLKTTAWENGKMV 50
>sp|P87316|ATP5E_SCHPO Putative ATP synthase subunit epsilon, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=atp15 PE=3 SV=1
Length = 67
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 36 NRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKDG 78
N Y +Y++I ++T+R+ALK E + + + ++ T WK+G
Sbjct: 8 NFSYSKYASICSQTVRQALKPEIKNEVKTHGDAEFLYTRWKNG 50
>sp|Q02099|RAD3_SCHPO Protein kinase rad3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=rad3 PE=1 SV=2
Length = 2386
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 25 RQAIQFSAEVLNRCYIQYSNIAARTLRRALKTEFR------ADAEKREESFIRIT-PWKD 77
+ AI + +++N C + I +++++ +LK FR D +SF+ IT P KD
Sbjct: 1977 QSAILITEKLINLCN---TRINSKSVKMSLKDHFRLSFDDPVDLVIPAKSFLDITLPAKD 2033
Query: 78 GKPIRHYSEPLHYVTPILLQDDLDIFS 104
HY P T + +D++DI +
Sbjct: 2034 ANRASHYPFPKTQPTLLKFEDEVDIMN 2060
>sp|C3K6Y4|GATA_PSEFS Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas
fluorescens (strain SBW25) GN=gatA PE=3 SV=1
Length = 483
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 25 RQAIQFSAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITP---W----KD 77
++ I A L+ Y + A+ +RR +K +F A E+ + TP W K
Sbjct: 353 QRRIMVGAYALSAGYYDAYYLKAQKIRRLIKNDFMAAFEEVDVILGPTTPNPAWKIGAKT 412
Query: 78 GKPIRHYSEPLHYVT 92
G PI Y E L+ +T
Sbjct: 413 GDPIAEYLEDLYTIT 427
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,724,376
Number of Sequences: 539616
Number of extensions: 1294190
Number of successful extensions: 3803
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3793
Number of HSP's gapped (non-prelim): 16
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)