Query psy11170
Match_columns 111
No_of_seqs 104 out of 183
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 19:51:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oee_I ATP synthase subunit ep 99.9 7.5E-28 2.6E-32 158.2 -0.8 56 31-86 2-59 (61)
2 2ck3_I ATP synthase subunit ep 99.9 4.2E-25 1.4E-29 140.5 1.0 47 31-77 3-49 (50)
3 2cp8_A NEXT to BRCA1 gene 1 pr 45.7 8.3 0.00028 24.2 1.3 21 8-28 7-28 (54)
4 3v2d_U 50S ribosomal protein L 28.1 40 0.0014 24.0 2.7 20 26-45 63-82 (118)
5 2ghj_A 50S ribosomal protein L 28.0 36 0.0012 24.1 2.4 19 26-44 61-79 (118)
6 3r8s_Q 50S ribosomal protein L 27.9 40 0.0014 23.9 2.7 20 26-45 62-81 (117)
7 2ooa_A E3 ubiquitin-protein li 26.1 1.1E+02 0.0039 19.0 4.2 33 13-52 16-48 (52)
8 2ftc_L MRPL20 protein; mitocho 25.9 42 0.0015 23.8 2.5 20 26-45 63-82 (118)
9 3se7_A VANA; alpha-beta struct 24.8 60 0.002 24.5 3.3 24 30-56 320-343 (346)
10 2zjr_N 50S ribosomal protein L 24.5 40 0.0014 23.9 2.1 20 26-45 63-82 (118)
11 3e5n_A D-alanine-D-alanine lig 23.3 52 0.0018 25.8 2.8 25 29-56 348-372 (386)
12 2lg7_A Uncharacterized protein 22.6 41 0.0014 24.1 1.9 35 67-102 92-126 (129)
13 2joj_A Centrin protein; N-term 22.5 1.1E+02 0.0037 16.9 3.6 40 12-51 29-74 (77)
14 1j7q_A CAVP, calcium vector pr 22.3 89 0.0031 17.9 3.1 38 12-50 36-82 (86)
15 4fu0_A D-alanine--D-alanine li 22.1 47 0.0016 25.3 2.2 24 30-56 327-350 (357)
16 3i12_A D-alanine-D-alanine lig 21.9 60 0.0021 24.8 2.8 24 30-56 330-353 (364)
17 2vml_A Phycocyanin alpha chain 21.8 67 0.0023 23.1 2.9 35 9-46 62-96 (162)
18 4eg0_A D-alanine--D-alanine li 20.8 59 0.002 24.0 2.5 24 29-55 293-316 (317)
19 1tiz_A Calmodulin-related prot 20.2 1E+02 0.0036 16.3 2.9 37 12-48 23-65 (67)
No 1
>3oee_I ATP synthase subunit epsilon; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_I* 3fks_I 3oe7_I* 2hld_I* 3oeh_I* 3ofn_I* 4b2q_I* 2xok_I* 3zry_I*
Probab=99.93 E-value=7.5e-28 Score=158.19 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=41.5
Q ss_pred HHHHhccchHHHHHHHHHHHHHhcChHHHHHHh-hcccceeEEeecCCCcccc-cccc
Q psy11170 31 SAEVLNRCYIQYSNIAARTLRRALKTEFRADAE-KREESFIRITPWKDGKPIR-HYSE 86 (111)
Q Consensus 31 aWR~AGlSY~rYSnIAAraVR~aLKee~R~~A~-kR~~t~lK~tkWenGKp~~-~~~l 86 (111)
+||+|||||++|+||||++||+|||||+|++|+ +|+.+++|+++|+||++++ +.+|
T Consensus 2 ~WR~AGltY~~Ys~iaA~~vR~aLKe~~r~~A~~~R~~~~~k~~~w~nGk~~~e~~~l 59 (61)
T 3oee_I 2 AWRKAGISYAAYLNVAAQAIRSSLKTELQTASVLNRSQTDAFYTQYKNGTAASEPTPI 59 (61)
T ss_dssp ------CCHHHHHHHTTTTTTC--CCSSCCHHHHTTTCCCCEEEECCC---CCCSCCE
T ss_pred cHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHhhcccceEEEEeccCCcccCCCccC
Confidence 699999999999999999999999999999999 9999999999999995544 4443
No 2
>2ck3_I ATP synthase subunit epsilon\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} PDB: 1e79_I* 1h8e_I* 2jdi_I* 2v7q_I* 2wss_I* 2w6j_I 2w6h_I 2w6i_I 2xnd_I*
Probab=99.90 E-value=4.2e-25 Score=140.45 Aligned_cols=47 Identities=43% Similarity=0.532 Sum_probs=22.7
Q ss_pred HHHHhccchHHHHHHHHHHHHHhcChHHHHHHhhcccceeEEeecCC
Q psy11170 31 SAEVLNRCYIQYSNIAARTLRRALKTEFRADAEKREESFIRITPWKD 77 (111)
Q Consensus 31 aWR~AGlSY~rYSnIAAraVR~aLKee~R~~A~kR~~t~lK~tkWen 77 (111)
+||+|||||++|+||||++||+|||||+|++|++|+++++|+++|+|
T Consensus 3 ~WR~aG~sY~~Ys~i~A~~vR~~LKe~~r~~A~~R~~~~~k~~kW~~ 49 (50)
T 2ck3_I 3 YWRQAGLSYIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVKVKK 49 (50)
T ss_dssp TTSSSSCCHHHHHHHHHHHHHTC------------------------
T ss_pred HHHHhCccHHHHHHHHHHHHHHHhCcHHHHHHHhcccceeeeecCCC
Confidence 69999999999999999999999999999999999999999999997
No 3
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.66 E-value=8.3 Score=24.17 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=16.5
Q ss_pred Ccch-hhHHhhccCchhHHHHH
Q psy11170 8 SRYP-LLTLMSNMGYDDKRQAI 28 (111)
Q Consensus 8 ~~~~-~~~~~~~~~~~~~~~~m 28 (111)
.||+ .|..+..|||.|....+
T Consensus 7 e~~a~~L~~L~eMGF~D~~~N~ 28 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCDRQLNL 28 (54)
T ss_dssp TTHHHHHHHHHHHTCCCHHHHH
T ss_pred HhhHHHHHHHHHcCCCcHHHHH
Confidence 4787 89999999997766554
No 4
>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...
Probab=28.10 E-value=40 Score=23.95 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=16.5
Q ss_pred HHHHHHHHHhccchHHHHHH
Q psy11170 26 QAIQFSAEVLNRCYIQYSNI 45 (111)
Q Consensus 26 ~~m~~aWR~AGlSY~rYSnI 45 (111)
+-|+++=|..|+||+++.+-
T Consensus 63 ~RINAa~R~~GlsYs~fi~g 82 (118)
T 3v2d_U 63 VRINAACRQHGLNYSTFIHG 82 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHH
Confidence 35788889999999998753
No 5
>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A
Probab=28.01 E-value=36 Score=24.12 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.0
Q ss_pred HHHHHHHHHhccchHHHHH
Q psy11170 26 QAIQFSAEVLNRCYIQYSN 44 (111)
Q Consensus 26 ~~m~~aWR~AGlSY~rYSn 44 (111)
+-++++=|..|+||+++.+
T Consensus 61 ~RINAa~R~~glsYS~fi~ 79 (118)
T 2ghj_A 61 ARINAAVRAYGLNYSTFIN 79 (118)
T ss_dssp HHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 4578888999999999875
No 6
>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...
Probab=27.90 E-value=40 Score=23.89 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=16.4
Q ss_pred HHHHHHHHHhccchHHHHHH
Q psy11170 26 QAIQFSAEVLNRCYIQYSNI 45 (111)
Q Consensus 26 ~~m~~aWR~AGlSY~rYSnI 45 (111)
+-|+++=|..|+||.++.+-
T Consensus 62 ~RINAa~R~~GlsYs~fi~~ 81 (117)
T 3r8s_Q 62 ARINAAARQNGISYSKFING 81 (117)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHH
Confidence 35788889999999998753
No 7
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=26.11 E-value=1.1e+02 Score=18.98 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=17.0
Q ss_pred hHHhhccCchhHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q psy11170 13 LTLMSNMGYDDKRQAIQFSAEVLNRCYIQYSNIAARTLRR 52 (111)
Q Consensus 13 ~~~~~~~~~~~~~~~m~~aWR~AGlSY~rYSnIAAraVR~ 52 (111)
-+|| .||||. +....|-+.++=+ .++|+..||.
T Consensus 16 a~Lm-~mGFsr--~~ai~AL~~a~nn----ve~AaniLle 48 (52)
T 2ooa_A 16 AKLM-GEGYAF--EEVKRALEIAQNN----VEVARSILRE 48 (52)
T ss_dssp HHHH-HTTCCH--HHHHHHHHHTTTC----HHHHHHHHHH
T ss_pred HHHH-HcCCCH--HHHHHHHHHhCCC----HHHHHHHHHH
Confidence 3455 599973 2222233443322 4667777664
No 8
>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=25.92 E-value=42 Score=23.80 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=16.5
Q ss_pred HHHHHHHHHhccchHHHHHH
Q psy11170 26 QAIQFSAEVLNRCYIQYSNI 45 (111)
Q Consensus 26 ~~m~~aWR~AGlSY~rYSnI 45 (111)
+-|+++=|..|+||.++.+-
T Consensus 63 ~RINAa~R~~g~sYs~fi~~ 82 (118)
T 2ftc_L 63 NRITAASQEHGLKYPALIGN 82 (118)
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 45788889999999988753
No 9
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=24.83 E-value=60 Score=24.48 Aligned_cols=24 Identities=13% Similarity=-0.000 Sum_probs=19.1
Q ss_pred HHHHHhccchHHHHHHHHHHHHHhcCh
Q psy11170 30 FSAEVLNRCYIQYSNIAARTLRRALKT 56 (111)
Q Consensus 30 ~aWR~AGlSY~rYSnIAAraVR~aLKe 56 (111)
..|+++|++|.+ +++++++.+|+.
T Consensus 320 ~~~~~~G~~~~~---l~~~li~~a~~~ 343 (346)
T 3se7_A 320 RMMTAAGLSRAD---VIDRLVSLALAG 343 (346)
T ss_dssp HHHHHTTCCHHH---HHHHHHHHHHC-
T ss_pred HHHHHhCCCHHH---HHHHHHHHHHHh
Confidence 368999999764 888999988874
No 10
>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ...
Probab=24.50 E-value=40 Score=23.90 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=16.4
Q ss_pred HHHHHHHHHhccchHHHHHH
Q psy11170 26 QAIQFSAEVLNRCYIQYSNI 45 (111)
Q Consensus 26 ~~m~~aWR~AGlSY~rYSnI 45 (111)
+-++++=|..|+||+++.+-
T Consensus 63 ~RINAa~R~~GlsYS~fi~g 82 (118)
T 2zjr_N 63 QRINAGARLHGMNYSTFING 82 (118)
T ss_dssp HHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 45788889999999998753
No 11
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=23.29 E-value=52 Score=25.77 Aligned_cols=25 Identities=16% Similarity=0.078 Sum_probs=18.8
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCh
Q psy11170 29 QFSAEVLNRCYIQYSNIAARTLRRALKT 56 (111)
Q Consensus 29 ~~aWR~AGlSY~rYSnIAAraVR~aLKe 56 (111)
-..|+++|++|. .++.++++.+|+.
T Consensus 348 p~~~~~~Gi~~~---~li~~li~~a~~r 372 (386)
T 3e5n_A 348 PKLWQASGLDYR---GLITRLIELALER 372 (386)
T ss_dssp HHHHHTTTCCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHH---HHHHHHHHHHHHH
Confidence 347999999965 5667888888853
No 12
>2lg7_A Uncharacterized protein; APSY spectroscopy, structural genomics, joint center for STR genomics, JCSG, calcium-binding protein; NMR {Parabacteroides distasonis} PDB: 2lge_A
Probab=22.62 E-value=41 Score=24.10 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=22.0
Q ss_pred cceeEEeecCCCccccccccCceeeeeeeecCCcce
Q psy11170 67 ESFIRITPWKDGKPIRHYSEPLHYVTPILLQDDLDI 102 (111)
Q Consensus 67 ~t~lK~tkWenGKp~~~~~l~~~~vn~~~~~~~~~~ 102 (111)
.+..-++.|+|||.++++++. |--.--|..|||.+
T Consensus 92 pmqwvvtvykngkeiekkslv-frdgkeistddlnl 126 (129)
T 2lg7_A 92 PMQWVVTVYKNGKEIEKKSLV-FRDGKEISTDDLNL 126 (129)
T ss_dssp CEEEEEEEEETTEEEEEEEEE-ECSCCCCSCCCCCC
T ss_pred cceEEEEEEeCCceeeeeeeE-eecCccccccccce
Confidence 345667889999999887762 33333344555554
No 13
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=22.46 E-value=1.1e+02 Score=16.91 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=26.5
Q ss_pred hhHHhhccCchhHHHHHHHHHHHh-----c-cchHHHHHHHHHHHH
Q psy11170 12 LLTLMSNMGYDDKRQAIQFSAEVL-----N-RCYIQYSNIAARTLR 51 (111)
Q Consensus 12 ~~~~~~~~~~~~~~~~m~~aWR~A-----G-lSY~rYSnIAAraVR 51 (111)
+..++..+|..-..+.+...++.+ | ++|-.|.++..+.++
T Consensus 29 l~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 74 (77)
T 2joj_A 29 LKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEKIK 74 (77)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhc
Confidence 445666777766666666667665 2 888888877765543
No 14
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=22.29 E-value=89 Score=17.90 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=26.0
Q ss_pred hhHHhhccCchhHHHH---HHHHHHHh-----c-cchHHHHHHHHHHH
Q psy11170 12 LLTLMSNMGYDDKRQA---IQFSAEVL-----N-RCYIQYSNIAARTL 50 (111)
Q Consensus 12 ~~~~~~~~~~~~~~~~---m~~aWR~A-----G-lSY~rYSnIAAraV 50 (111)
+..++..+|+.-..+. +...++.+ | ++| .|..++.+.+
T Consensus 36 l~~~l~~~g~~~~~~~~~~~~~~~~~~d~~~~g~i~~-eF~~~~~~~~ 82 (86)
T 1j7q_A 36 TMDMLTKLGQTYTKRETEAIMKEARGPKGDKKNIGPE-EWLTLCSKWV 82 (86)
T ss_dssp HHHHHHHTSCCCSHHHHHHHHHHHHCSSCSSCCBCTT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCCCcCCH-HHHHHHHHHH
Confidence 4556777887655555 66666665 2 899 9988877654
No 15
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=22.10 E-value=47 Score=25.33 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=18.4
Q ss_pred HHHHHhccchHHHHHHHHHHHHHhcCh
Q psy11170 30 FSAEVLNRCYIQYSNIAARTLRRALKT 56 (111)
Q Consensus 30 ~aWR~AGlSY~rYSnIAAraVR~aLKe 56 (111)
.+|+++|++| ..++.+++..+|.-
T Consensus 327 ~~~~~~G~~~---~~li~~li~~aler 350 (357)
T 4fu0_A 327 NMMKGIGLSF---SQMLDKLIGLYVEL 350 (357)
T ss_dssp HHHHTTTCCH---HHHHHHHHHTTC--
T ss_pred HHHHHhCcCH---HHHHHHHHHHHhcc
Confidence 4799999996 56788889888753
No 16
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=21.94 E-value=60 Score=24.85 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=18.3
Q ss_pred HHHHHhccchHHHHHHHHHHHHHhcCh
Q psy11170 30 FSAEVLNRCYIQYSNIAARTLRRALKT 56 (111)
Q Consensus 30 ~aWR~AGlSY~rYSnIAAraVR~aLKe 56 (111)
..|+++|++|. .++.++++.+|+.
T Consensus 330 ~~~~a~G~~~~---~l~~~li~~a~~~ 353 (364)
T 3i12_A 330 KLWQASGLGYT---DLISRLIELALER 353 (364)
T ss_dssp HHHHTTTCCHH---HHHHHHHHHHHHH
T ss_pred HHHHHhCcCHH---HHHHHHHHHHHHH
Confidence 36999999964 5677888888854
No 17
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=21.83 E-value=67 Score=23.06 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=25.0
Q ss_pred cchhhHHhhccCchhHHHHHHHHHHHhccchHHHHHHH
Q psy11170 9 RYPLLTLMSNMGYDDKRQAIQFSAEVLNRCYIQYSNIA 46 (111)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~m~~aWR~AGlSY~rYSnIA 46 (111)
.+|-++-+....|...| |+.-||. .--|+||++-|
T Consensus 62 ~~P~l~~~gG~~y~~~~--~~~ClRD-~~~~LRyitYa 96 (162)
T 2vml_A 62 KFPYLTQPGQMGYGDTN--QAKCARD-ISHYLRFITYS 96 (162)
T ss_dssp HSGGGGSTTSTTCSHHH--HHHHHHH-HHHHHHHHHHH
T ss_pred HCcCccCCCCCcccHHH--HHHHHHH-HHHHHHHHHHH
Confidence 57888777777787766 7779999 44566666544
No 18
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=20.84 E-value=59 Score=23.98 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=18.3
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC
Q psy11170 29 QFSAEVLNRCYIQYSNIAARTLRRALK 55 (111)
Q Consensus 29 ~~aWR~AGlSY~rYSnIAAraVR~aLK 55 (111)
..+|+++|++|. .++.++++.||+
T Consensus 293 p~~~~~~G~~~~---~l~~~li~~a~~ 316 (317)
T 4eg0_A 293 PKAARSIGIGYS---ELVVKVLSLTLN 316 (317)
T ss_dssp HHHHHHTTCCHH---HHHHHHHHTTC-
T ss_pred HHHHHHcCCCHH---HHHHHHHHHHhh
Confidence 347999999965 678888888876
No 19
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=20.17 E-value=1e+02 Score=16.34 Aligned_cols=37 Identities=5% Similarity=-0.069 Sum_probs=23.4
Q ss_pred hhHHhhccCchhHHHHHHHHHHHh-----c-cchHHHHHHHHH
Q psy11170 12 LLTLMSNMGYDDKRQAIQFSAEVL-----N-RCYIQYSNIAAR 48 (111)
Q Consensus 12 ~~~~~~~~~~~~~~~~m~~aWR~A-----G-lSY~rYSnIAAr 48 (111)
+..++..+|..-..+.+...++.+ | ++|-.|.++..+
T Consensus 23 l~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 65 (67)
T 1tiz_A 23 FREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65 (67)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 345566677665566666666665 2 778777776553
Done!