RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11170
         (111 letters)



>d2v7qi1 a.137.8.1 (I:1-47) Epsilon subunit of mitochondrial
          F1F0-ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 47

 Score = 59.8 bits (145), Expect = 3e-14
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 39 YIQYSNIAARTLRRALKTEFRADAEKREESFIRITP 74
          YI+YS I A+ +R ALKTEF+A+A K   S I+I  
Sbjct: 11 YIRYSQICAKAVRDALKTEFKANAMKTSGSTIKIVK 46


>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680
          {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 121

 Score = 26.5 bits (58), Expect = 0.58
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 68 SFIRITPWKD-GKPIRH-YSEPLHYVTPILLQ 97
          S I  T W      ++  Y +PLHY+T +LLQ
Sbjct: 25 SLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQ 56


>d2k5qa1 b.40.13.1 (A:2-97) Uncharacterized protein BC4932
          {Bacillus cereus [TaxId: 1396]}
          Length = 96

 Score = 25.5 bits (56), Expect = 0.77
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 57 EFRADAEKREESFIRITPWKDGKPIRHYSE 86
          EF A    R+E+F+R+    D K +  + E
Sbjct: 51 EFTAQKNLRKEAFLRVY-HSDKKGVSAWEE 79


>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
          {Escherichia coli [TaxId: 562]}
          Length = 144

 Score = 24.8 bits (54), Expect = 1.9
 Identities = 6/37 (16%), Positives = 12/37 (32%)

Query: 8  SRYPLLTLMSNMGYDDKRQAIQFSAEVLNRCYIQYSN 44
           +  L+    +          Q +    NR ++ YS 
Sbjct: 22 IKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSK 58


>d2gpia1 d.354.1.1 (A:1-90) Hypothetical protein Shew3726
          {Shewanella loihica [TaxId: 359303]}
          Length = 90

 Score = 24.0 bits (52), Expect = 2.7
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 21 YDDKRQAIQFSAEV---LNRCYIQYSNIAARTLRR--------ALKTEFRADAEKREESF 69
          +D +  AI F+A+    +  CYI    +      +        +L  +FR D E++ E  
Sbjct: 13 WDVQLSAIHFTAQQQGMVIDCYIGQKVLEHLAAEKINNSEQALSLFEQFRFDIEEQAEKL 72

Query: 70 I 70
          I
Sbjct: 73 I 73


>d2pw4a1 d.380.1.1 (A:1-184) Uncharacterized protein Jann2411
           {Jannaschia sp. ccs1 [TaxId: 290400]}
          Length = 184

 Score = 24.5 bits (53), Expect = 3.3
 Identities = 9/65 (13%), Positives = 16/65 (24%), Gaps = 14/65 (21%)

Query: 46  AARTLRRALKTEFRADAEKREES--------------FIRITPWKDGKPIRHYSEPLHYV 91
               L R L T   A +  +  +                 +    DG    H+      +
Sbjct: 61  GFVELARLLHTAIDALSNGQVATAATALNHLLRKHPATPELAQDPDGTWRLHHHPLDAEL 120

Query: 92  TPILL 96
            P+  
Sbjct: 121 VPMWT 125


>d1zt2a1 d.264.1.1 (A:3-329) DNA primase small subunit PriA
          {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 327

 Score = 24.2 bits (52), Expect = 5.0
 Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 3/25 (12%)

Query: 61 DAEKREESFIRITPWKDGKPIRHYS 85
          D E RE +     P+     +RH S
Sbjct: 30 DMELREFAL---QPFGSDTYVRHLS 51


>d1v33a_ d.264.1.1 (A:) DNA primase {Archaeon Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 346

 Score = 23.9 bits (51), Expect = 5.1
 Identities = 6/25 (24%), Positives = 7/25 (28%), Gaps = 3/25 (12%)

Query: 61 DAEKREESFIRITPWKDGKPIRHYS 85
            E RE  F       +G   R   
Sbjct: 31 TLELREFGF---DHSGEGPSDRKNQ 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 411,541
Number of extensions: 17356
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 13
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.1 bits)