BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11171
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 150/271 (55%), Gaps = 24/271 (8%)
Query: 51 GWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLDHAIPATS 108
GWT+ G+ P AR VSN+++ E D + + MQWGQ +DHDLD A P T
Sbjct: 60 GWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA-PETE 118
Query: 109 LESWE--GIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDT 165
L S E + C++ C CFP+ P +DP++K + +C+ F R+ +C +
Sbjct: 119 LGSSEHSKVQCEEYCVQGDECFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSL--- 175
Query: 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANK-------PYL 218
R+QIN +T+++D S VYG + LR++ + G L A N+ Y
Sbjct: 176 --ARDQINAVTSFLDASLVYGSEPSLASRLRNLSSPLG------LMAVNQEAWDHGLAYP 227
Query: 219 PIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHW 278
P C T +++ C AGD RA+EQ+ L +HTL LREHNR+A++L+ +NPHW
Sbjct: 228 PFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHW 287
Query: 279 DGETLFHETRKIVGAMMQHITYTQWLPHILG 309
DGE L+ E RKI+GA +Q IT+ +LP +LG
Sbjct: 288 DGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/271 (37%), Positives = 150/271 (55%), Gaps = 24/271 (8%)
Query: 51 GWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLDHAIPATS 108
GWT+ G+ P AR VSN+++ E D + + MQWGQ +DHDLD A P T
Sbjct: 60 GWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA-PETE 118
Query: 109 LESWE--GIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDT 165
L S E + C++ C CFP+ P +DP++K + +C+ F R+ +C +
Sbjct: 119 LGSSEHSKVQCEEYCVQGDECFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSL--- 175
Query: 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANK-------PYL 218
R+QIN +T+++D S VYG + LR++ + G L A N+ Y
Sbjct: 176 --ARDQINAVTSFLDASLVYGSEPXLASRLRNLSSPLG------LMAVNQEAWDHGLAYP 227
Query: 219 PIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHW 278
P C T +++ C AGD RA+EQ+ L +HTL LREHNR+A++L+ +NPHW
Sbjct: 228 PFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHW 287
Query: 279 DGETLFHETRKIVGAMMQHITYTQWLPHILG 309
DGE L+ E RKI+GA +Q IT+ +LP +LG
Sbjct: 288 DGEMLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 150/273 (54%), Gaps = 24/273 (8%)
Query: 51 GWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLDHAIPATS 108
GWT+ G+ P AR VSN+++ E D + + MQWGQ +DHDLD A P T
Sbjct: 60 GWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA-PETE 118
Query: 109 LESWE--GIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDT 165
L S E + C++ C CFP+ P +DP++K + +C+ F R+ +C +
Sbjct: 119 LGSSEHSKVQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSL--- 175
Query: 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANK-------PYL 218
R+QIN +T+++D S VYG + LR++ + G L A N+ Y
Sbjct: 176 --ARDQINSVTSFLDASLVYGSEPSLASRLRNLSSPLG------LMAVNQEAWDHGLAYP 227
Query: 219 PIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHW 278
P C T + + C AGD RA+EQ+ L +HTL LREHNR+A++L+ +NPHW
Sbjct: 228 PFNNMKPSPCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHW 287
Query: 279 DGETLFHETRKIVGAMMQHITYTQWLPHILGPD 311
DGE L+ E RKI+GA +Q IT+ +LP +LG +
Sbjct: 288 DGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/273 (37%), Positives = 150/273 (54%), Gaps = 24/273 (8%)
Query: 51 GWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLDHAIPATS 108
GWT+ G+ P AR VSN+++ E D + + MQWGQ +DHDLD A P T
Sbjct: 60 GWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA-PETE 118
Query: 109 LESWE--GIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDT 165
L S E + C++ C CFP+ P +DP++K + +C+ F R+ +C +
Sbjct: 119 LGSSEHSKVQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSL--- 175
Query: 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANK-------PYL 218
R+QIN +T+++D S VYG + LR++ + G L A N+ Y
Sbjct: 176 --ARDQINSVTSFLDASLVYGSEPXLASRLRNLSSPLG------LMAVNQEAWDHGLAYP 227
Query: 219 PIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHW 278
P C T + + C AGD RA+EQ+ L +HTL LREHNR+A++L+ +NPHW
Sbjct: 228 PFNNMKPSPCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHW 287
Query: 279 DGETLFHETRKIVGAMMQHITYTQWLPHILGPD 311
DGE L+ E RKI+GA +Q IT+ +LP +LG +
Sbjct: 288 DGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 121/204 (59%), Gaps = 11/204 (5%)
Query: 115 IDCKKSCAFSPPCFPMEVPHDDPRVKKRR-CIDFIRSSAIC-GSGMTSMFWDTVQPREQI 172
++C+ SC PPCFP+++P +DPR+K + CI F RS C GS +T R QI
Sbjct: 1 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSXPACPGSNITI--------RNQI 52
Query: 173 NQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAAN-KPYLPIAGATEVDCRRD 231
N LT+++D S VYG E +R LR++ N G L N + LP + C
Sbjct: 53 NALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLT 112
Query: 232 PTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIV 291
+ I C LAGD R++E L +MHTL LREHNR+A +L+ +NP WDGE L+ E RKIV
Sbjct: 113 NRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIV 172
Query: 292 GAMMQHITYTQWLPHILGPDGMVK 315
GAM+Q ITY +LP +LGP M K
Sbjct: 173 GAMVQIITYRDYLPLVLGPTAMRK 196
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 121/204 (59%), Gaps = 11/204 (5%)
Query: 115 IDCKKSCAFSPPCFPMEVPHDDPRVKKRR-CIDFIRSSAIC-GSGMTSMFWDTVQPREQI 172
++C+ SC PPCFP+++P +DPR+K + CI F RS C GS +T R QI
Sbjct: 1 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSXPACPGSNITI--------RNQI 52
Query: 173 NQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAAN-KPYLPIAGATEVDCRRD 231
N LT+++D S VYG E +R LR++ N G L N + LP + C
Sbjct: 53 NALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLT 112
Query: 232 PTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIV 291
+ I C LAGD R++E L +MHTL LREHNR+A +L+ +NP WDGE L+ E RKIV
Sbjct: 113 NRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIV 172
Query: 292 GAMMQHITYTQWLPHILGPDGMVK 315
GAM+Q ITY +LP +LGP M K
Sbjct: 173 GAMVQIITYRDYLPLVLGPTAMRK 196
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 121/204 (59%), Gaps = 11/204 (5%)
Query: 115 IDCKKSCAFSPPCFPMEVPHDDPRVKKRR-CIDFIRSSAIC-GSGMTSMFWDTVQPREQI 172
++C+ SC PPCFP+++P +DPR+K + CI F RS C GS +T R QI
Sbjct: 1 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNITI--------RNQI 52
Query: 173 NQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAAN-KPYLPIAGATEVDCRRD 231
N LT+++D S VYG E +R LR++ N G L N + LP + C
Sbjct: 53 NALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLT 112
Query: 232 PTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIV 291
+ I C LAGD R++E L +MHTL LREHNR+A +L+ +NP WDGE L+ E RKIV
Sbjct: 113 NRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIV 172
Query: 292 GAMMQHITYTQWLPHILGPDGMVK 315
GAM+Q ITY +LP +LGP M K
Sbjct: 173 GAMVQIITYRDYLPLVLGPTAMRK 196
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 150/273 (54%), Gaps = 24/273 (8%)
Query: 51 GWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLDHAIPATS 108
GWT+ G+ P AR VSN+++ E D + + MQWGQ +DHDLD A P T
Sbjct: 48 GWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA-PETE 106
Query: 109 LESWE--GIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDT 165
L S E C++ C CFP+ P +DP++K + +C+ F R+ +C +
Sbjct: 107 LGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSL--- 163
Query: 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANK-------PYL 218
REQIN +T+++D S VYG + LR++ + G L A N+ YL
Sbjct: 164 --AREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLG------LMAVNQEAWDHGLAYL 215
Query: 219 PIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHW 278
P C T + + C LAGD RA+EQ+ L HTL LREHNR+A++L+ +NPHW
Sbjct: 216 PFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHW 275
Query: 279 DGETLFHETRKIVGAMMQHITYTQWLPHILGPD 311
+GE L+ E RKI+GA +Q IT+ +LP +LG +
Sbjct: 276 NGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 308
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/273 (38%), Positives = 150/273 (54%), Gaps = 24/273 (8%)
Query: 51 GWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLDHAIPATS 108
GWT+ G+ P AR VSN+++ E D + + MQWGQ +DHDLD A P T
Sbjct: 48 GWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA-PETE 106
Query: 109 LESWE--GIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDT 165
L S E C++ C CFP+ P +DP++K + +C+ F R+ +C +
Sbjct: 107 LGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSL--- 163
Query: 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANK-------PYL 218
REQIN +T+++D S VYG + LR++ + G L A N+ YL
Sbjct: 164 --AREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLG------LMAVNQEAWDHGLAYL 215
Query: 219 PIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHW 278
P C T + + C LAGD RA+EQ+ L HTL LREHNR+A++L+ +NPHW
Sbjct: 216 PFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHW 275
Query: 279 DGETLFHETRKIVGAMMQHITYTQWLPHILGPD 311
+GE L+ E RKI+GA +Q IT+ +LP +LG +
Sbjct: 276 NGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 308
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 149/271 (54%), Gaps = 24/271 (8%)
Query: 51 GWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLDHAIPATS 108
GWT+ G+ P AR VSN+++ E D + + MQWGQ +DHDLD A P T
Sbjct: 60 GWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA-PETE 118
Query: 109 LESWE--GIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDT 165
L S E C++ C CFP+ P +DP++K + +C+ F R+ +C +
Sbjct: 119 LGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSL--- 175
Query: 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANK-------PYL 218
REQIN +T+++D S VYG + LR++ + G L A N+ YL
Sbjct: 176 --AREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLG------LMAVNQEAWDHGLAYL 227
Query: 219 PIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHW 278
P C T + + C LAGD RA+EQ+ L HTL LREHNR+A++L+ +NPHW
Sbjct: 228 PFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHW 287
Query: 279 DGETLFHETRKIVGAMMQHITYTQWLPHILG 309
+GE L+ E RKI+GA +Q IT+ +LP +LG
Sbjct: 288 NGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 149/271 (54%), Gaps = 24/271 (8%)
Query: 51 GWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLDHAIPATS 108
GWT+ G+ P AR VSN+++ E D + + MQWGQ +DHDLD A P T
Sbjct: 60 GWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA-PETE 118
Query: 109 LESWE--GIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDT 165
L S E C++ C CFP+ P +DP++K + +C+ F R+ +C +
Sbjct: 119 LGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSL--- 175
Query: 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANK-------PYL 218
REQIN +T+++D S VYG + LR++ + G L A N+ YL
Sbjct: 176 --AREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLG------LMAVNQEAWDHGLAYL 227
Query: 219 PIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHW 278
P C T + + C LAGD RA+EQ+ L HTL LREHNR+A++L+ +NPHW
Sbjct: 228 PFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHW 287
Query: 279 DGETLFHETRKIVGAMMQHITYTQWLPHILG 309
+GE L+ E RKI+GA +Q IT+ +LP +LG
Sbjct: 288 NGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 149/271 (54%), Gaps = 24/271 (8%)
Query: 51 GWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLDHAIPATS 108
GWT+ G+ P AR VSN+++ E D + + MQWGQ +DHDLD A P T
Sbjct: 60 GWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFA-PETE 118
Query: 109 LESWE--GIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDT 165
L S E C++ C CFP+ P +DP++K + +C+ F R+ +C +
Sbjct: 119 LGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSL--- 175
Query: 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANK-------PYL 218
REQIN +T+++D S VYG + LR++ + G L A N+ YL
Sbjct: 176 --AREQINAVTSFLDASLVYGSEPXLASRLRNLSSPLG------LMAVNQEAWDHGLAYL 227
Query: 219 PIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHW 278
P C T + + C LAGD RA+EQ+ L HTL LREHNR+A++L+ +NPHW
Sbjct: 228 PFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHW 287
Query: 279 DGETLFHETRKIVGAMMQHITYTQWLPHILG 309
+GE L+ E RKI+GA +Q IT+ +LP +LG
Sbjct: 288 NGEKLYQEARKILGAFIQIITFRDYLPIVLG 318
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 148/271 (54%), Gaps = 24/271 (8%)
Query: 51 GWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLDHAIPATS 108
GWT+ G+ P AR VSN+++ E D + + MQWGQ +DHDLD A P T
Sbjct: 60 GWTQRKTRNGFRVPLAREVSNKIVGYLDEDGVLDQNRSLLFMQWGQIVDHDLDFA-PETE 118
Query: 109 LESWE--GIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDT 165
L S E C++ C CFP+ P +DP++K + +C+ F R+ +C +
Sbjct: 119 LGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSL--- 175
Query: 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANK-------PYL 218
REQIN +T+++D S VYG + L+++ + G L A N+ YL
Sbjct: 176 --AREQINAVTSFLDASLVYGSEPSLASRLQNLSSPLG------LMAVNQEAWDHGLAYL 227
Query: 219 PIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHW 278
P C T + + C LAGD RA+EQ+ L HTL LREHNR+A++L+ +NP W
Sbjct: 228 PFNNRKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQW 287
Query: 279 DGETLFHETRKIVGAMMQHITYTQWLPHILG 309
DGE L+ E RKI+GA +Q IT+ +LP +LG
Sbjct: 288 DGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo
Lactoperoxidase With Salicylhydroxamic Acid At 2.48 A
Resolution
Length = 595
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/271 (38%), Positives = 148/271 (54%), Gaps = 24/271 (8%)
Query: 51 GWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLDHAIPATS 108
GWT+ G+ P AR VSN+++ E D + + MQWGQ +DHDLD A P T
Sbjct: 60 GWTQRKTRNGFRVPLAREVSNKIVGYLDEDGVLDQNRSLLFMQWGQIVDHDLDFA-PETE 118
Query: 109 LESWE--GIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDT 165
L S E C++ C CFP+ P +DP++K + +C+ F R+ +C +
Sbjct: 119 LGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSL--- 175
Query: 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANK-------PYL 218
REQIN +T+++D S VYG + L+++ + G L A N+ YL
Sbjct: 176 --AREQINAVTSFLDASLVYGSEPXLASRLQNLSSPLG------LMAVNQEAWDHGLAYL 227
Query: 219 PIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHW 278
P C T + + C LAGD RA+EQ+ L HTL LREHNR+A++L+ +NP W
Sbjct: 228 PFNNRKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPQW 287
Query: 279 DGETLFHETRKIVGAMMQHITYTQWLPHILG 309
DGE L+ E RKI+GA +Q IT+ +LP +LG
Sbjct: 288 DGEKLYQEARKILGAFVQIITFRDYLPIVLG 318
>pdb|3F9P|A Chain A, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|B Chain B, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS1|A Chain A, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|B Chain B, Human Myeloperoxidase Inactivated By Tx5
Length = 114
Score = 58.5 bits (140), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 46 FDKSKGWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLD 101
F GWT G+K G+ AR VSNE++ T+ +TPD + M MQWGQ LDHDLD
Sbjct: 43 FSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLD 100
>pdb|1MYP|A Chain A, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|B Chain B, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|A Chain A, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|B Chain B, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|3ZS0|A Chain A, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|B Chain B, Human Myeloperoxidase Inactivated By Tx2
Length = 108
Score = 58.5 bits (140), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 46 FDKSKGWTKGLKYYGYEKPPARVVSNELIS--TESITPDPVITHMVMQWGQFLDHDLD 101
F GWT G+K G+ AR VSNE++ T+ +TPD + M MQWGQ LDHDLD
Sbjct: 43 FSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLD 100
>pdb|1CXP|A Chain A, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|B Chain B, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|A Chain A, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|B Chain B, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|A Chain A, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|B Chain B, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|A Chain A, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|B Chain B, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|A Chain A, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|B Chain B, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|A Chain A, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|B Chain B, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|A Chain A, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|B Chain B, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|E Chain E, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|F Chain F, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|I Chain I, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|J Chain J, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|M Chain M, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|N Chain N, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 104
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 46 FDKSKGWTKGLKYYGYEKPPARVVSNELI--STESITPDPVITHMVMQWGQFLDHDLD 101
F GWT G+K G+ AR VSNE++ T+ +TPD + M MQWGQ LDHDLD
Sbjct: 41 FSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLD 98
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 252
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREHNR+ L+ +P W E LF +R I+ I
Sbjct: 253 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 312
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 313 VIEDYVQHLSGYHFKLKFDPELLF 336
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 252
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREHNR+ L+ +P W E LF +R I+ I
Sbjct: 253 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 312
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 313 VIEDYVQHLSGYHFKLKFDPELLF 336
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 203 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 258
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREHNR+ L+ +P W E LF +R I+ I
Sbjct: 259 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 318
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 319 VIEDYVQHLSGYHFKLKFDPELLF 342
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 202 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 257
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREHNR+ L+ +P W E LF +R I+ I
Sbjct: 258 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 317
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 318 VIEDYVQHLSGYHFKLKFDPELLF 341
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 201 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 256
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREHNR+ L+ +P W E LF +R I+ I
Sbjct: 257 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 316
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 317 VIEDYVQHLSGYHFKLKFDPELLF 340
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 201 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 256
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREHNR+ L+ +P W E LF +R I+ I
Sbjct: 257 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 316
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 317 VIEDYVQHLSGYHFKLKFDPELLF 340
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 202 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 257
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREHNR+ L+ +P W E LF +R I+ I
Sbjct: 258 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 317
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 318 VIEDYVQHLSGYHFKLKFDPELLF 341
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 252
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREHNR+ L+ +P W E LF +R I+ I
Sbjct: 253 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 312
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 313 VIEDYVQHLSGYHFKLKFDPELLF 336
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 214 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 269
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREHNR+ L+ +P W E LF +R I+ I
Sbjct: 270 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 329
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 330 VIEDYVQHLSGYHFKLKFDPELLF 353
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 220 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 275
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREHNR+ L+ +P W E LF +R I+ I
Sbjct: 276 QFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKI 335
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 336 VIEDYVQHLSGYHFKLKFDPELLF 359
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 252
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREH R+ L+ +P W E LF ++ I+ I
Sbjct: 253 QFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKI 312
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 313 VIEDYVQHLSGYHFKLKFDPELLF 336
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 4/144 (2%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIG 238
+D + +YG T +R LR ++ G L+ ++ P P T+V+ P
Sbjct: 197 VDLNHIYGETLDRQHKLRLFKD--GKLKYQVIGGEVYP--PTVKDTQVEMIYPPHIPENL 252
Query: 239 CLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHI 298
G GL+ T+WLREH R+ L+ +P W E LF ++ I+ I
Sbjct: 253 QFAVGQEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKI 312
Query: 299 TYTQWLPHILGPDGMVKINIEWKF 322
++ H+ G +K + E F
Sbjct: 313 VIEDYVQHLSGYHFKLKFDPELLF 336
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 19/185 (10%)
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
F ++S G G T L +D +YG ER LR + D
Sbjct: 188 QFFKTSGKMGPGFT-------------KALGHGVDLGHIYGDNLERQYQLR-LFKDGKLK 233
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
Q + P + A R P +S + G GL+ T+WLREHN
Sbjct: 234 YQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMA---VGQEVFGLLPGLMLYATIWLREHN 290
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKFIYG 325
R+ L+ +P W E LF R I+ I +++ + G +++ + + ++G
Sbjct: 291 RVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG--YFLQLKFDPELLFG 348
Query: 326 RMRRY 330
+Y
Sbjct: 349 AQFQY 353
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 19/185 (10%)
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
F ++S G G T L +D +YG ER LR + D
Sbjct: 184 QFFKTSGKMGPGFT-------------KALGHGVDLGHIYGDNLERQYQLR-LFKDGKLK 229
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
Q + P + A R P +S + G GL+ T+WLREHN
Sbjct: 230 YQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMA---VGQEVFGLLPGLMLYATIWLREHN 286
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKFIYG 325
R+ L+ +P W E LF R I+ I +++ + G +++ + + ++G
Sbjct: 287 RVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG--YFLQLKFDPELLFG 344
Query: 326 RMRRY 330
+Y
Sbjct: 345 AQFQY 349
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 19/185 (10%)
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
F ++S G G T L +D +YG ER LR + D
Sbjct: 184 QFFKTSGKMGPGFT-------------KALGHGVDLGHIYGDNLERQYQLR-LFKDGKLK 229
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
Q + P + A R P +S + G GL+ T+WLREHN
Sbjct: 230 YQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMA---VGQEVFGLLPGLMLYATIWLREHN 286
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKFIYG 325
R+ L+ +P W E LF R I+ I +++ + G +++ + + ++G
Sbjct: 287 RVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG--YFLQLKFDPELLFG 344
Query: 326 RMRRY 330
+Y
Sbjct: 345 AQFQY 349
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 19/185 (10%)
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
F ++S G G T L +D +YG ER LR + D
Sbjct: 208 QFFKTSGKMGPGFT-------------KALGHGVDLGHIYGDNLERQYQLR-LFKDGKLK 253
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
Q + P + A R P +S + G GL+ T+WLREHN
Sbjct: 254 YQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMA---VGQEVFGLLPGLMLYATIWLREHN 310
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKFIYG 325
R+ L+ +P W E LF R I+ I +++ + G +++ + + ++G
Sbjct: 311 RVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSG--YFLQLKFDPELLFG 368
Query: 326 RMRRY 330
+Y
Sbjct: 369 AQFQY 373
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
F ++S G G T L +D +YG ER LR + D
Sbjct: 177 QFFKTSGKMGPGFT-------------KALGHGVDLGHIYGDNLERQYQLR-LFKDGKLK 222
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
Q + P + A R P +S + G GL+ T+WLREHN
Sbjct: 223 YQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMA---VGQEVFGLLPGLMLYATIWLREHN 279
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKF 322
R+ L+ +P W E LF R I+ I +++ + G +K + E F
Sbjct: 280 RVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLF 336
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
F ++S G G T L +D +YG ER LR + D
Sbjct: 177 QFFKTSGKMGPGFT-------------KALGHGVDLGHIYGDNLERQYQLR-LFKDGKLK 222
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
Q + P + A R P +S + G GL+ T+WLREHN
Sbjct: 223 YQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMA---VGQEVFGLLPGLMLYATIWLREHN 279
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKF 322
R+ L+ +P W E LF R I+ I +++ + G +K + E F
Sbjct: 280 RVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLF 336
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
F ++S G G T L +D +YG ER LR + D
Sbjct: 176 QFFKTSGKMGPGFT-------------KALGHGVDLGHIYGDNLERQYQLR-LFKDGKLK 221
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
Q + P + A R P +S + G GL+ T+WLREHN
Sbjct: 222 YQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMA---VGQEVFGLLPGLMLYATIWLREHN 278
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKF 322
R+ L+ +P W E LF R I+ I +++ + G +K + E F
Sbjct: 279 RVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLF 335
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
F ++S G G T L +D +YG ER LR + D
Sbjct: 177 QFFKTSGKMGPGFT-------------KALGHGVDLGHIYGDNLERQYQLR-LFKDGKLK 222
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
Q + P + A R P +S + G GL+ T+WLREHN
Sbjct: 223 YQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMA---VGQEVFGLLPGLMLYATIWLREHN 279
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKF 322
R+ L+ +P W E LF R I+ I +++ + G +K + E F
Sbjct: 280 RVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLF 336
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
F ++S G G T L +D +YG ER LR + D
Sbjct: 176 QFFKTSGKMGPGFT-------------KALGHGVDLGHIYGDNLERQYQLR-LFKDGKLK 221
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
Q + P + A R P +S + G GL+ T+WLREHN
Sbjct: 222 YQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMA---VGQEVFGLLPGLMLYATIWLREHN 278
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKF 322
R+ L+ +P W E LF R I+ I +++ + G +K + E F
Sbjct: 279 RVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLF 335
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 69/185 (37%), Gaps = 19/185 (10%)
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
F ++S G G T L +D +YG ER LR + D
Sbjct: 208 QFFKTSGKMGPGFT-------------KALGHGVDLGHIYGDNLERQYQLR-LFKDGKLK 253
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
Q + P + A R P +S + G GL+ T+WLREHN
Sbjct: 254 YQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMA---VGQEVFGLLPGLMLYATIWLREHN 310
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKFIYG 325
R+ L+ +P W E LF R I+ I ++ + G +++ + + ++G
Sbjct: 311 RVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYAQQLSG--YFLQLKFDPELLFG 368
Query: 326 RMRRY 330
+Y
Sbjct: 369 AQFQY 373
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 64/177 (36%), Gaps = 17/177 (9%)
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
F ++S G G T L +D +YG ER LR + D
Sbjct: 176 QFFKTSGKMGPGFT-------------KALGHGVDLGHIYGDNLERQYQLR-LFKDGKLK 221
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
Q + P + A R P +S + G GL+ T+WLREH
Sbjct: 222 YQMLNGEVYPPSVEEAPVLMHYPRGIPPQSQMA---VGQEVFGLLPGLMLYATIWLREHQ 278
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKF 322
R+ L+ +P W E LF + I+ I +++ + G +K + E F
Sbjct: 279 RVCDLLKAEHPTWGDEQLFQTAKLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLF 335
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 238 GCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQH 297
G ++GDIR N G+ A+ L+++EHN + L+D + + E L+ R + A++
Sbjct: 270 GLAISGDIR-NSWAGVSALQALFIKEHNAVCDALKDEDDDLEDEDLYRYARLVTSAVVAK 328
Query: 298 ITYTQWLPHILGPDGMVK-INIEWKFIYGRMRR----YVGSNRLEVVIG 341
I W +L D ++ + W + G+ + + GS+ L V+G
Sbjct: 329 IHTIDWTVQLLKTDTLLAGMRANWYGLLGKKFKDSFGHAGSSILGGVVG 377
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 9 GCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
G N ++++ +A D GVY+C+A +P+G V S+ A
Sbjct: 59 GGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREA 92
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 10 CNNLMIHSMEASDEGVYECMAKSPMGEVKSQPA---RAIFDKSKGWTKGLKYYG 60
+ L + + E DEGVY C+A + +GEV++ +A G+ KYYG
Sbjct: 62 THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYG 115
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
L I S E SD+G YEC+A + G S PA
Sbjct: 166 LQIESSEESDQGKYECVATNSAGTRYSAPA 195
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
L I S E SD+G YEC+A + G S PA
Sbjct: 167 LQIESSEESDQGKYECVATNSAGTRYSAPA 196
>pdb|1BEV|3 Chain 3, Bovine Enterovirus Vg-5-27
Length = 242
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 169 REQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDC 228
RE + + Y+ V + + LR +G L +L K Y +G+ E+ C
Sbjct: 58 REGVEGVERYVIPVSVQDALDAQIYALRLELGGSGPLSSSLLGTLAKHYTQWSGSVEITC 117
Query: 229 RRDPTESNIGCLL------AGDIRANEQVGLLAMHTLW 260
T G +L GD+ N + +L H +W
Sbjct: 118 MFTGTFMTTGKVLLAYTPPGGDMPRNREEAMLGTHVIW 155
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPARAI 45
NL+I ++E DEG Y+C+A++ +G +S A+ I
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPARAI 45
NL+I ++E DEG Y+C+A++ +G +S A+ I
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
L I E SD+G YEC+A + G S PA
Sbjct: 169 LQIEQSEESDQGKYECVATNSAGTRYSAPA 198
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
L I S E +D+G YEC+A + G S PA
Sbjct: 166 LQIESSEETDQGKYECVASNSAGVRYSSPA 195
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 22 DEGVYECMAKSPMGEV 37
DE +YEC+A++P GEV
Sbjct: 75 DENIYECVAQNPHGEV 90
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
L I S E +D+G YEC+A + G S PA
Sbjct: 166 LQIESSEETDQGKYECVATNSAGVRYSSPA 195
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 157 GMTSMFWDTVQPREQINQLTAYID--GSQVYGFTEERSRVLRDIRNDNGFLRQGILSAAN 214
G+ +D + N+ YID YGF E + V + + D+ +L QG++ AAN
Sbjct: 136 GLPLEVFDEFRAALAANRAQFYIDVPSGPFYGFNREGATVSQGLI-DHWWL-QGMMGAAN 193
Query: 215 KPYLPIAGATEVDCRRDPTESNIGCLLA 242
Y IA +E D D ++ L+A
Sbjct: 194 AHYECIAAFSETDFTDDLKRIDVPVLVA 221
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
L I S E +D+G YEC+A + G S PA
Sbjct: 166 LQIESSEETDQGKYECVATNSAGVRYSSPA 195
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 9 GCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
G +NL I + SDEG Y+C+A++ G +S
Sbjct: 363 GGSNLRILGVVKSDEGFYQCVAENEAGNAQS 393
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 13 LMIHSMEASDEGVYEC-MAKSPMGEVKSQPARAIFDKSKGWTKGLK 57
+ + +E DEGVY C A P G +SQ + K W +G +
Sbjct: 79 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQ 124
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 13 LMIHSMEASDEGVYEC-MAKSPMGEVKSQPARAIFDKSKGWTKGLK 57
+ + +E DEGVY C A P G +SQ + K W +G +
Sbjct: 79 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQ 124
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 13 LMIHSMEASDEGVYEC-MAKSPMGEVKSQPARAIFDKSKGWTKGLK 57
+ + +E DEGVY C A P G +SQ + K W +G +
Sbjct: 80 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQ 125
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
L I S E +D+G YEC+A + G S PA
Sbjct: 166 LQIESSEETDQGKYECVATNSAGVRYSSPA 195
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
E G L IH + SD G+Y C K+ G V S
Sbjct: 57 EDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 13 LMIHSMEASDEGVYEC-MAKSPMGEVKSQPARAIFDKSKGWTKGLK 57
+ + +E DEGVY C A P G +SQ + K W +G +
Sbjct: 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQ 139
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 7 GSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPA 66
G + L I S+ A+D G+Y+C+AKS +G + ++ GL Y + A
Sbjct: 486 GDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY--------GLPYIRQMEKKA 537
Query: 67 RVVSNELISTESITPDPV 84
V LI T + P+
Sbjct: 538 IVAGETLIVTCPVAGYPI 555
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 12 NLMIHSMEASDEGVYECMAKSP 33
NL I ++EASD+G Y C SP
Sbjct: 67 NLYIANVEASDKGNYSCFVSSP 88
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I +++ DEG+YEC A++ G+ K Q
Sbjct: 167 LKIFNIQLEDEGIYECEAENIRGKDKHQ 194
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 9 GCNNLMIHSMEASDEGVYECMAKSPMGE 36
G ++L+ + ASD G Y C+AK+ GE
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGE 87
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin:
A New Domain Arrangement With Implications For
Homophilic Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin:
A New Domain Arrangement With Implications For
Homophilic Adhesion
Length = 395
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+L+ +ASDEG Y+C A++P G S+
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASSR 91
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+L IH+++ D G Y C+AK+ +G S+
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,788,364
Number of Sequences: 62578
Number of extensions: 493034
Number of successful extensions: 1340
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 90
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)