Query psy11171
Match_columns 372
No_of_seqs 209 out of 946
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:52:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2408|consensus 100.0 1.4E-80 3.1E-85 658.8 20.3 336 6-363 154-501 (719)
2 PF03098 An_peroxidase: Animal 100.0 7.6E-80 1.6E-84 641.1 8.5 306 5-353 3-318 (530)
3 PLN02283 alpha-dioxygenase 100.0 1.5E-65 3.3E-70 537.9 18.8 275 6-353 88-387 (633)
4 PLN00107 FAD-dependent oxidore 51.6 5.8 0.00013 38.2 0.5 47 260-311 160-206 (257)
5 PF10929 DUF2811: Protein of u 50.6 14 0.0003 27.5 2.2 19 271-289 17-35 (57)
6 TIGR01677 pln_FAD_oxido plant- 41.9 11 0.00024 40.3 0.9 56 250-310 446-511 (557)
7 PF11522 Pik1: Yeast phosphati 38.8 15 0.00032 26.8 0.8 20 283-303 3-22 (51)
8 PLN02465 L-galactono-1,4-lacto 38.8 12 0.00026 40.3 0.5 45 260-310 520-572 (573)
9 PF13940 Ldr_toxin: Toxin Ldr, 20.1 77 0.0017 21.1 1.6 14 89-102 3-16 (35)
10 PF12758 DUF3813: Protein of u 19.7 69 0.0015 24.3 1.5 15 281-295 3-17 (63)
No 1
>KOG2408|consensus
Probab=100.00 E-value=1.4e-80 Score=658.80 Aligned_cols=336 Identities=40% Similarity=0.685 Sum_probs=286.3
Q ss_pred CCCCCCCCCCCccccCCcccccccCCCCcccccCCcccccccCCcCcccccccCCCCCCChhhHhHhhhcCCCCCCCCch
Q psy11171 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVVSNELISTESITPDPVI 85 (372)
Q Consensus 6 ~~GsCNNl~~p~~G~sd~G~y~~~a~tp~~Rllpp~Y~DG~~~Pr~~~~~~s~~g~~LP~pR~VS~~l~~~~~~~~~~~~ 85 (372)
.+|+|||+.+|.||+ +.++|.|++||.|+||+++|++|+. +.+||+||+||++|+.....+++.++
T Consensus 154 ~dG~CNN~~~P~~Ga---------s~~~~~Rllpp~Yedg~~~p~~~~~-----~~~lP~~R~vS~~l~~~~~~~~~~~~ 219 (719)
T KOG2408|consen 154 IDGTCNNLRNPTLGA---------SNSPFRRLLPPKYEDGFSTPRGWSD-----GTPLPSARLVSNKLLSRSFSPPDSKF 219 (719)
T ss_pred cccccCCCCCCCccc---------ccChhhccCCccccccccCcccccc-----CCCCCchHHhhHhhhccccCCCCcch
Confidence 579999999999998 7899999999999999999999853 38999999999999975435788999
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCcCc-ccCCCcCCCCCCCCCcccccCCCCCCCCCCC-ceeeeccCccccCCCCccccc
Q psy11171 86 THMVMQWGQFLDHDLDHAIPATSLES-WEGIDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFW 163 (372)
Q Consensus 86 t~~~~~wgQfi~HDl~~t~~~~~~~~-~~g~~C~~~c~~~~~C~pI~vp~~Dp~~~~~-~Cm~f~RS~~~~~~g~~~~~~ 163 (372)
|+|+|||||||+|||++++....... .++.+|...|..+++|+||.+|++||+|... .||+|+||.++|.++
T Consensus 220 ~~~~mqwgQFi~HDl~~~~~~~~~~~~~~~~~C~~~~~~~p~C~pi~~p~~dp~~~~~~~C~~f~Rs~~~~~~~------ 293 (719)
T KOG2408|consen 220 NHMAMQWGQFIDHDLYFTPLSTVQNGELNIRCCNKPQLPSPPCFPIKIPPNDPYFPSNQRCLPFVRSLPACGSG------ 293 (719)
T ss_pred hHHHHHHHHHhcccccccCCcccccCCccccccCCCcCCCCcccceecCCCCCccCCcccceeceecCCCcccc------
Confidence 99999999999999999987665443 3566787888999999999999999999754 899999999999865
Q ss_pred CCCCCcccccCCCccccCCcCCCCCHHHHHHhhcccCCCCceeec-cccCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy11171 164 DTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQG-ILSAANKPYLPIAGATEVDCRRDPTESNIGCLLA 242 (372)
Q Consensus 164 ~~~~~reqiN~~T~~lD~S~vYGs~~~~~~~LR~~~~~~G~L~~~-~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~a 242 (372)
+.+++|||+|++|||||+|+||||+++++++||.|.+..|+|+.+ .....++.+||...+.+..|..........||.|
T Consensus 294 ~~~~~reQlNq~T~~lD~S~IYGss~~~~~~lR~f~~~~g~l~~~~~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~a 373 (719)
T KOG2408|consen 294 YNLGPREQLNQLTSFLDASVIYGSSDEDARKLRLFKDGKGLLRVDTGLFENGRPLLPFSTDPPNSCRSKPPGAPKPCFTA 373 (719)
T ss_pred ccCChhhhhccccccccchhccCCCHHHHHHHhcccCcccceeecccccccCcccCCCCCCCCccccccCCCCCCccccc
Confidence 357899999999999999999999999999999995433788887 3346788999999877888987655456789999
Q ss_pred CCccccchhHHHHHHHHHHhhhhHHHHHHhhhCCCCChhhHHHHHHHHHHHhcceeeeeecchhccCchhhhhcCceehh
Q psy11171 243 GDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKF 322 (372)
Q Consensus 243 GD~R~ne~~~l~~lhtlflReHNria~~L~~~np~w~dE~lfqeAR~Iv~A~~Q~Ity~E~LP~iLG~~~~~~~~l~~~~ 322 (372)
||.|+||+|+|++|||+|+|||||||++|+++||||+||+|||||||||+|++|||||+||||.|||.......|. .+.
T Consensus 374 GD~R~~~~pgL~~~hti~lREHNRiA~~Lk~~np~W~dE~lfQeaRkI~~A~~q~Ity~e~LP~ilG~~~~~~~g~-~~g 452 (719)
T KOG2408|consen 374 GDERANEQPGLAALHTLFLREHNRIATELKALNPHWSDERLFQEARKIVGAQVQHITYNEYLPKLLGAPLKVSLGG-YRG 452 (719)
T ss_pred CccccccCcchHHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHhhhhHHhhhhhhcCcccccCCcc-ccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999332222121 122
Q ss_pred hcccccCCcCCcee---eEEEcce-----eeecccccccCCCC-eeeeec
Q psy11171 323 IYGRMRRYVGSNRL---EVVIGTI-----IYDLRINFSCTSKG-QYSYSV 363 (372)
Q Consensus 323 ~~g~~~~~~~~n~~---~~~~~~~-----~yr~~~~f~~~~~g-~~~~~~ 363 (372)
|....+..++|+| +++|||+ +.|++++|.+.+++ ++++..
T Consensus 453 -Y~~~~dp~IsneFataAfRfgHsli~~~~~~l~~~~~~~~~~~~l~~~~ 501 (719)
T KOG2408|consen 453 -YDPNVDPTISNEFATAAFRFGHSLIPPFFQRLDENFQPIGEVVNLPLHD 501 (719)
T ss_pred -cCCCCChhhhhhhhHHHHhhhcccCchhhhhhcccCcccccccCchhhh
Confidence 4444444556777 5788887 58999999988876 666554
No 2
>PF03098 An_peroxidase: Animal haem peroxidase; InterPro: IPR002007 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. On the basis of sequence similarity, a number of animal haem peroxidases can be categorised as members of a superfamily: myeloperoxidase (MPO); eosinophil peroxidase (EPO); lactoperoxidase (LPO); thyroid peroxidase (TPO); prostaglandin H synthase (PGHS); and peroxidasin [, , ]. MPO plays a major role in the oxygen-dependent microbicidal system of neutrophils. EPO from eosinophilic granulocytes participates in immunological reactions, and potentiates tumor necrosis factor (TNF) production and hydrogen peroxide release by human monocyte-derived macrophages [, ]. In the main, MPO (and possibly EPO) utilises Cl-ions and H2O2 to form hypochlorous acid (HOCl), which can effectively kill bacteria or parasites. In secreted fluids, LPO catalyses the oxidation of thiocyanate ions (SCN-) by H2O2, producing the weak oxidising agent hypothiocyanite (OSCN-), which has bacteriostatic activity []. TPO uses I- ions and H2O2 to generate iodine, and plays a central role in the biosynthesis of thyroid hormones T(3) and T(4). To date, the 3D structures of MPO and PGHS have been reported. MPO is a homodimer: each monomer consists of a light (A or B) and a heavy (C or D) chain resulting from post-translational excision of 6 residues from the common precursor. Monomers are linked by a single inter-chain disulphide. Each monomer includes a bound calcium ion []. PGHS exists as a symmetric dimer, each monomer of which consists of 3 domains: an N-terminal epidermal growth factor (EGF) like module; a membrane-binding domain; and a large C-terminal catalytic domain containing the cyclooxygenase and the peroxidase active sites. The catalytic domain shows striking structural similarity to MPO. The cyclooxygenase active site, which catalyses the formation of prostaglandin G2 (PGG2) from arachidonic acid, resides at the apex of a long hydrophobic channel, extending from the membrane-binding domain to the centre of the molecule. The peroxidase active site, which catalyses the reduction of PGG2 to PGH2, is located on the other side of the molecule, at the haem binding site []. Both MPO and the catalytic domain of PGHS are mainly alpha-helical, 19 helices being identified as topologically and spatially equivalent; PGHS contains 5 additional N-terminal helices that have no equivalent in MPO. In both proteins, three Asn residues in each monomer are glycosylated.; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1FE2_A 1PGG_B 1PGF_A 3N8W_B 1IGZ_A 3KK6_B 3N8Z_A 1Q4G_A 1PTH_A 1EQH_A ....
Probab=100.00 E-value=7.6e-80 Score=641.10 Aligned_cols=306 Identities=38% Similarity=0.635 Sum_probs=222.8
Q ss_pred CCCCCCCCCCCCccccCCcccccccCCCCcccccCCcccccccCCcCcccccccCCCCCCChhhHhHhhhcCCC--CCCC
Q psy11171 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVVSNELISTES--ITPD 82 (372)
Q Consensus 5 ~~~GsCNNl~~p~~G~sd~G~y~~~a~tp~~Rllpp~Y~DG~~~Pr~~~~~~s~~g~~LP~pR~VS~~l~~~~~--~~~~ 82 (372)
-.+|+|||+.+|.||+ |++||.|++||.|+||+++||. +.+|.+||+||+||+.|+.... ...+
T Consensus 3 t~dG~cNN~~~p~~G~---------~~~~~~Rllp~~Y~dg~~~pr~-----~~~g~~lP~pR~is~~l~~~~~~~~~~~ 68 (530)
T PF03098_consen 3 TYDGSCNNLANPSWGA---------AGTPFRRLLPPAYADGVSEPRG-----SSNGSPLPNPREISNALFRRKDGFDPSH 68 (530)
T ss_dssp -SSSTTSSSSSTTTT----------SSEE-BESS-B--TTSSSBTTT-----SBTTBS---HHHHHHHHTB-SSGTTBEE
T ss_pred CCCCCccCCCcccccC---------CCCcccccCCcccccccccccc-----ccCCccCCCHHHHHHHHhhcccccCCCC
Confidence 3579999999999998 7999999999999999999996 6889999999999999997653 3445
Q ss_pred CchhHHHHHHHHHHHhhcccCCCCCCcCcccCCCcCCCCCCCCCcccccCCCCCCCCCC-CceeeeccCccccCCCCccc
Q psy11171 83 PVITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVPHDDPRVKK-RRCIDFIRSSAICGSGMTSM 161 (372)
Q Consensus 83 ~~~t~~~~~wgQfi~HDl~~t~~~~~~~~~~g~~C~~~c~~~~~C~pI~vp~~Dp~~~~-~~Cm~f~RS~~~~~~g~~~~ 161 (372)
..+|+|+|+|||||+|||++++... .| ..+++|+||+||++||+|.. .+||+|+||.++++++..
T Consensus 69 ~~~t~l~~~~gQfi~HDi~~~~~~~--------~C----~~~~~c~~I~ip~~Dp~~~~~~~c~~~~Rs~~~~~~~~~-- 134 (530)
T PF03098_consen 69 SGLTALFMQWGQFIDHDITLTPDSS--------SC----SDHPECFPIPIPPDDPFYRPFVRCMPFTRSAPAPDPGQS-- 134 (530)
T ss_dssp EEEEHHHHHHHHHHHHHH--BEBTT--------TH----HCBTTB--EE--TTEHHHHHTTSEE--B-B-BSSTSSS---
T ss_pred CcchHHHHHHHHHHhhhhccccccc--------cc----cCCCCccccccCCCcccccCCCCCcccccccccccCCCC--
Confidence 7899999999999999999986421 14 22899999999999999865 699999999999875432
Q ss_pred ccCCCCCcccccCCCccccCCcCCCCCHHHHHHhhc-ccCCCCceeecc---ccCCCCCCCCCCCCCC-CCCCCCCCCCC
Q psy11171 162 FWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRD-IRNDNGFLRQGI---LSAANKPYLPIAGATE-VDCRRDPTESN 236 (372)
Q Consensus 162 ~~~~~~~reqiN~~T~~lD~S~vYGs~~~~~~~LR~-~~~~~G~L~~~~---~~~~~~~~lP~~~~~~-~~c~~~~~~~~ 236 (372)
|.. +|||+|++|+|||||+||||+++++++||+ + ++|+|++.. ...++..+||.+.+.. ..|
T Consensus 135 --~~~-~req~N~~T~~lD~S~vYGs~~~~~~~LR~~~--~~G~L~~~~~~~~~~~~~~~lp~~~~~~~~~~-------- 201 (530)
T PF03098_consen 135 --CSL-PREQINQATSYLDLSQVYGSSEEQARRLRSSF--KGGKLKSDNGEFPPPNGGGLLPSDDPPTDSGC-------- 201 (530)
T ss_dssp --SSS-STTBEE-STSSSS-HHHH-SSHHHHHHTBESS--TTTEB--ETSSEEBBTTBES--B-TSCSSGHH--------
T ss_pred --Ccc-chhhhccccceeecccccCCCHHHHHHhhcch--hhhhhhcccccccccCCCCCCCCCcccccccc--------
Confidence 445 999999999999999999999999999999 7 689999731 2356777888875211 112
Q ss_pred ccccccCCccccchhHHHHHHHHHHhhhhHHHHHHhhhCCCCChhhHHHHHHHHHHHhcceeeeeecchhccCchhhhhc
Q psy11171 237 IGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKI 316 (372)
Q Consensus 237 ~~cf~aGD~R~ne~~~l~~lhtlflReHNria~~L~~~np~w~dE~lfqeAR~Iv~A~~Q~Ity~E~LP~iLG~~~~~~~ 316 (372)
.||++||.|+||+|+|++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|||++.|+++
T Consensus 202 -~~f~~GD~R~ne~~~l~~lhtlflReHNria~~L~~~np~w~de~lFqeAR~iv~a~~Q~Ivy~E~LP~llG~~~~~~~ 280 (530)
T PF03098_consen 202 -RCFLAGDPRVNENPGLTALHTLFLREHNRIADELKKINPHWDDERLFQEARRIVIAQYQHIVYNEYLPALLGPEAMNKF 280 (530)
T ss_dssp -GSB-TSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHGHGGHHHH
T ss_pred -cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHhhhhHhhhhhhhcchhhhhhc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceehhhcccccCCcC--CceeeEEEcceeeeccccccc
Q psy11171 317 NIEWKFIYGRMRRYVG--SNRLEVVIGTIIYDLRINFSC 353 (372)
Q Consensus 317 ~l~~~~~~g~~~~~~~--~n~~~~~~~~~~yr~~~~f~~ 353 (372)
.+.+.. .|.+.+|.. ...+..||...+|||.+.+.+
T Consensus 281 ~~~~~~-~g~~~~y~~~~~~~i~~EFa~aA~RfgHs~i~ 318 (530)
T PF03098_consen 281 LLPPLN-NGYYKGYDPSVDPSISNEFAAAAYRFGHSMIP 318 (530)
T ss_dssp S-G-----GCGTTS-TTS--S-BTTH-HHHGGGGGGGS-
T ss_pred cccccc-cccccCCCCCCCCchhHHHHHHHHHhhheeeh
Confidence 774322 223333332 345566665556666665554
No 3
>PLN02283 alpha-dioxygenase
Probab=100.00 E-value=1.5e-65 Score=537.86 Aligned_cols=275 Identities=19% Similarity=0.335 Sum_probs=215.9
Q ss_pred CCCCCCCCCCCccccCCcccccccCCCCcccccCCc-ccccccCCcCcccccccCCCCCCChhhHhHhhhcCCCCCC-CC
Q psy11171 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQP-ARAIFDKSKGWTKGLKYYGYEKPPARVVSNELISTESITP-DP 83 (372)
Q Consensus 6 ~~GsCNNl~~p~~G~sd~G~y~~~a~tp~~Rllpp~-Y~DG~~~Pr~~~~~~s~~g~~LP~pR~VS~~l~~~~~~~~-~~ 83 (372)
.+|+|||+.+|.||+ |++||+|++||. |.|| ..+|+||+||++|+.++.+.+ ..
T Consensus 88 ~DGscNNl~~P~~G~---------agt~f~R~v~p~~~~~~---------------~~~P~pr~vs~~ll~r~~f~~~~~ 143 (633)
T PLN02283 88 ADGKCNDPFNEGAGS---------QGTFFGRNMPPVDQKDK---------------LLDPHPSVVATKLLARKKFIDTGK 143 (633)
T ss_pred CCCCCcCCCCccccc---------CCCccccCCCccccCCC---------------CCCCCHHHHHHHHHhhccccCCCC
Confidence 479999999999997 899999999996 4444 347999999999998776654 46
Q ss_pred chhHHHHHHHHHHHhhcccCCCCCCcCcccCCCcCCCCCCCCCcccccCCCCCCCCCCCceeeeccCccccCCCCccccc
Q psy11171 84 VITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVPHDDPRVKKRRCIDFIRSSAICGSGMTSMFW 163 (372)
Q Consensus 84 ~~t~~~~~wgQfi~HDl~~t~~~~~~~~~~g~~C~~~c~~~~~C~pI~vp~~Dp~~~~~~Cm~f~RS~~~~~~g~~~~~~ 163 (372)
.+|+|+|+|||||+|||+.... ..+|.+|.+|.....-...+||+|.||.++|. +.
T Consensus 144 ~~n~~~~~w~Qf~~HD~~~~~~------------------~~~~~~i~~p~~~~~~~~~~~~~f~RT~~~~~-~~----- 199 (633)
T PLN02283 144 QFNMIAASWIQFMIHDWIDHLE------------------DTQQIELTAPKEVASQCPLKSFKFYKTKEVPT-GS----- 199 (633)
T ss_pred cchHHHHHHHHHHHhhhhhhcC------------------ccccccccCCcccccCCcccccccccCCCCCC-CC-----
Confidence 8999999999999999865321 11245566653211111248999999998864 22
Q ss_pred CCCCCcccccCCCccccCCcCCCCCHHHHHHhhcccCCCCceeeccccCCCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q psy11171 164 DTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAG 243 (372)
Q Consensus 164 ~~~~~reqiN~~T~~lD~S~vYGs~~~~~~~LR~~~~~~G~L~~~~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aG 243 (372)
|. .+++|+|++|||||+|+||||+++++++||+| ++||||++. ..+||... ..||++|
T Consensus 200 ~~-~~~~qiN~~Ts~lD~S~IYGss~~~~~~LRtf--~~GkLk~~~-----~~~l~~~~--------------~~~~~~G 257 (633)
T PLN02283 200 PD-IKTGSLNIRTPWWDGSVIYGSNEKGLRRVRTF--KDGKLKISE-----DGLLLHDE--------------DGIPISG 257 (633)
T ss_pred CC-CCccccccccceeecccccCCCHHHHHhhhCC--CCCccCcCC-----CCCCCCCc--------------cCCcccC
Confidence 23 28999999999999999999999999999999 689999851 13565431 2489999
Q ss_pred CccccchhHHHHHHHHHHhhhhHHHHHHhhhCCCCChhhHHHHHHHHHHHhcceeeeeecchhccCchhhh------hcC
Q psy11171 244 DIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMV------KIN 317 (372)
Q Consensus 244 D~R~ne~~~l~~lhtlflReHNria~~L~~~np~w~dE~lfqeAR~Iv~A~~Q~Ity~E~LP~iLG~~~~~------~~~ 317 (372)
|.| |++|+|++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||.|||.+.|. ++|
T Consensus 258 d~r-n~~pGL~~lhtLF~REHNrIad~L~~~nP~w~DE~LFQeAR~Iv~A~~q~I~~~EylP~iLg~~~~~~~~~~~w~g 336 (633)
T PLN02283 258 DVR-NSWAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVTSAVIAKIHTIDWTVELLKTDTLLAGMRANWYG 336 (633)
T ss_pred ccc-cccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHheeeeeeeccHHhcCCccccccccccccc
Confidence 999 8999999999999999999999999999999999999999999999999999999999999988762 344
Q ss_pred ceeh---hhcccc--------cCC------cCCceeeEEEcceeeeccccccc
Q psy11171 318 IEWK---FIYGRM--------RRY------VGSNRLEVVIGTIIYDLRINFSC 353 (372)
Q Consensus 318 l~~~---~~~g~~--------~~~------~~~n~~~~~~~~~~yr~~~~f~~ 353 (372)
|..+ ..||.. .+| ...+.+..||+. +||| +...+
T Consensus 337 llg~~~~~~~g~~~~~~~~g~~gy~~~~~~~v~~~is~EF~a-aYR~-Hslip 387 (633)
T PLN02283 337 LLGKKFKDTFGHIGGPILSGLVGLKKPNNHGVPYSLTEEFTS-VYRM-HSLLP 387 (633)
T ss_pred ccchhhhhhcccccccccccccCCCccccCCCCcchhHHHHH-HHhh-hhcCC
Confidence 4321 123221 111 234667888876 6998 66554
No 4
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=51.60 E-value=5.8 Score=38.24 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=41.1
Q ss_pred HHhhhhHHHHHHhhhCCCCChhhHHHHHHHHHHHhcceeeeeecchhccCch
Q psy11171 260 WLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPD 311 (372)
Q Consensus 260 flReHNria~~L~~~np~w~dE~lfqeAR~Iv~A~~Q~Ity~E~LP~iLG~~ 311 (372)
|-+.||.-++.|+++.|.|+| |.+.|+- --=+.+-.||||-.+||..
T Consensus 160 WGK~h~l~~~~l~~lYPr~~d---FlavR~~--lDP~G~F~N~yl~rllg~~ 206 (257)
T PLN00107 160 WGKNRNAAFDGAIAKYKKAGE---FLKVKER--LDPEGLFSSEWSDKILGLA 206 (257)
T ss_pred chhccCCCHHHHHHHCcCHHH---HHHHHHH--hCCCCccCCHHHHHHhCcc
Confidence 788999999999999999987 8888873 3568889999999999874
No 5
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=50.60 E-value=14 Score=27.55 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=15.3
Q ss_pred HhhhCCCCChhhHHHHHHH
Q psy11171 271 LRDINPHWDGETLFHETRK 289 (372)
Q Consensus 271 L~~~np~w~dE~lfqeAR~ 289 (372)
.-..||+||-.+|||.|=.
T Consensus 17 fie~hP~WDQ~Rl~~aALa 35 (57)
T PF10929_consen 17 FIETHPNWDQYRLFQAALA 35 (57)
T ss_pred HHHcCCCchHHHHHHHHHH
Confidence 3456999999999999843
No 6
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=41.87 E-value=11 Score=40.31 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=46.0
Q ss_pred hhHHHHHHHH----------HHhhhhHHHHHHhhhCCCCChhhHHHHHHHHHHHhcceeeeeecchhccCc
Q psy11171 250 QVGLLAMHTL----------WLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGP 310 (372)
Q Consensus 250 ~~~l~~lhtl----------flReHNria~~L~~~np~w~dE~lfqeAR~Iv~A~~Q~Ity~E~LP~iLG~ 310 (372)
.+-+..+--| |-+.|+..++.|+++.|+|+| |++.|+- --=|.+-.|+||-.+||.
T Consensus 446 ~~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~~~YP~~~d---F~alR~~--~DP~g~F~N~yl~~l~~~ 511 (557)
T TIGR01677 446 EDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIRKYPNADK---FLKVKDS--YDPKGLFSSEWSDEILGI 511 (557)
T ss_pred HHHHHHHHHHHHhhcCCCCCccccccchHHHHHHhCCCHHH---HHHHHHh--cCCCCccCCHHHHHHhCc
Confidence 4456666665 788899999999999999988 8888873 345888899999999987
No 7
>PF11522 Pik1: Yeast phosphatidylinositol-4-OH kinase Pik1; InterPro: IPR021601 Pik1 is a regulator of membrane traffic and participates in the mating-pheromone signal-transduction cascade. The protein is localised to the nucleus and cytoplasm in the Golgi. Pik1 is thought to have an actin-independent role in membrane transport []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2JU0_B.
Probab=38.77 E-value=15 Score=26.79 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcceeeeeec
Q psy11171 283 LFHETRKIVGAMMQHITYTQW 303 (372)
Q Consensus 283 lfqeAR~Iv~A~~Q~Ity~E~ 303 (372)
=||.+||+ +-.+|+|.|+.=
T Consensus 3 ~Fqv~RRv-~NklQ~ilFn~~ 22 (51)
T PF11522_consen 3 SFQVCRRV-INKLQHILFNTS 22 (51)
T ss_dssp TTHHHHHH-HHHHT--SS-SS
T ss_pred hhHHHHHH-HHHHHHHHhCCC
Confidence 38999997 678999999853
No 8
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=38.76 E-value=12 Score=40.27 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=39.1
Q ss_pred HHhhhh--------HHHHHHhhhCCCCChhhHHHHHHHHHHHhcceeeeeecchhccCc
Q psy11171 260 WLREHN--------RMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGP 310 (372)
Q Consensus 260 flReHN--------ria~~L~~~np~w~dE~lfqeAR~Iv~A~~Q~Ity~E~LP~iLG~ 310 (372)
|-+.|. ..+++|+++.| |+| |+++|+. --=|.|-.|+||-.|+|.
T Consensus 520 WgK~h~~~~~~~~~~~~~~L~~~YP-~d~---F~~~R~~--lDP~g~f~N~~L~~lf~~ 572 (573)
T PLN02465 520 WAKIEVPKDKEELEALRERLRKRFP-VDA---FNKARKE--LDPKGILSNNLLEKLFPK 572 (573)
T ss_pred cceeccccccchhhcCHHHHHhhCC-HHH---HHHHHHH--hCCCCccCCHHHHHhhCC
Confidence 677889 99999999999 988 9999994 356899999999999875
No 9
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=20.08 E-value=77 Score=21.09 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhccc
Q psy11171 89 VMQWGQFLDHDLDH 102 (372)
Q Consensus 89 ~~~wgQfi~HDl~~ 102 (372)
++|||--++||++.
T Consensus 3 Laqlg~~~WhDLAA 16 (35)
T PF13940_consen 3 LAQLGIAFWHDLAA 16 (35)
T ss_pred HHHHHHHHHHHhHh
Confidence 68999999999964
No 10
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=19.69 E-value=69 Score=24.31 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHhc
Q psy11171 281 ETLFHETRKIVGAMM 295 (372)
Q Consensus 281 E~lfqeAR~Iv~A~~ 295 (372)
.+|||+||+-|.--.
T Consensus 3 N~LFqqAr~aV~~a~ 17 (63)
T PF12758_consen 3 NRLFQQARDAVEQAV 17 (63)
T ss_pred chHHHHHHHHHHHHH
Confidence 479999999987433
Done!