Query psy11171
Match_columns 372
No_of_seqs 209 out of 946
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 19:52:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q9k_A Lactoperoxidase, LPO; b 100.0 1.9E-91 6.6E-96 731.3 14.5 340 5-362 23-377 (595)
2 1q4g_A Prostaglandin G/H synth 100.0 1.9E-62 6.5E-67 510.4 13.2 259 12-353 102-361 (553)
3 1d2v_C Myeloperoxidase; heme-p 100.0 6.6E-62 2.3E-66 497.2 13.9 230 116-353 2-240 (466)
4 3nt1_A Prostaglandin-endoperox 100.0 1.2E-60 4.2E-65 497.9 9.8 262 8-352 97-360 (587)
5 1d2v_A Myeloperoxidase; heme-p 100.0 2.6E-31 9E-36 219.6 6.9 92 5-105 9-102 (104)
6 2ju0_B Phosphatidylinositol 4- 38.2 9.6 0.00033 26.8 0.8 19 283-302 4-22 (52)
7 3lqv_P Splicing factor 3B subu 27.1 42 0.0014 22.1 2.4 18 266-283 11-28 (39)
8 1rpb_A Tricyclic peptide RP 71 21.8 31 0.0011 20.2 0.9 9 7-15 4-12 (26)
9 2hjd_A Quorum-sensing antiacti 21.8 39 0.0013 26.8 1.8 28 253-289 29-56 (102)
10 1rfy_A TRAM protein;, transcri 21.6 40 0.0014 26.8 1.8 28 253-289 29-56 (102)
No 1
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase, phenyl isothiocyanat iodide, PEG, edman reagent; HET: SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A* 3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Probab=100.00 E-value=1.9e-91 Score=731.33 Aligned_cols=340 Identities=32% Similarity=0.556 Sum_probs=278.2
Q ss_pred CCCCCCCCCCCCccccCCcccccccCCCCcccccCCcccccccCCcCcccccccCCCCCCChhhHhHhhhc--CCCCCCC
Q psy11171 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVVSNELIS--TESITPD 82 (372)
Q Consensus 5 ~~~GsCNNl~~p~~G~sd~G~y~~~a~tp~~Rllpp~Y~DG~~~Pr~~~~~~s~~g~~LP~pR~VS~~l~~--~~~~~~~ 82 (372)
-.+|+|||+.||.||+ |++||+|+|||.|+||+++||+|+++++++|.+||+||+||++|+. .+...++
T Consensus 23 t~DG~CNNl~~P~wGa---------a~t~f~R~lpp~Y~DGv~~Pr~~~~~~~~~g~~lP~~R~VS~~l~~~~~~~~~~~ 93 (595)
T 3q9k_A 23 TITGDCNNRRSPALGA---------ANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLD 93 (595)
T ss_dssp CSSCTTSSSSSTTTTC---------SSEECBCSSCCCCTTSSSCCTTSSTTCCBTTBCCCCHHHHHHHHTCCSCCTTCEE
T ss_pred CCCCCccCcCCcccCC---------CCCCccCCCCcccccccccccccccccccCCCCCCCHHHHHHHHHhcccccCCCC
Confidence 4689999999999998 7999999999999999999999998889999999999999999986 3445678
Q ss_pred CchhHHHHHHHHHHHhhcccCCCCCCcCcc-cCCCcCCCCCCCCCcccccCCCCCCCCCC-CceeeeccCccccCCCCcc
Q psy11171 83 PVITHMVMQWGQFLDHDLDHAIPATSLESW-EGIDCKKSCAFSPPCFPMEVPHDDPRVKK-RRCIDFIRSSAICGSGMTS 160 (372)
Q Consensus 83 ~~~t~~~~~wgQfi~HDl~~t~~~~~~~~~-~g~~C~~~c~~~~~C~pI~vp~~Dp~~~~-~~Cm~f~RS~~~~~~g~~~ 160 (372)
.++|+|+|||||||+|||++|+...+...+ .+.+|+..|..+++|+||+||++||+|.. ..||+|+||+++|+++
T Consensus 94 ~~~t~~~~~wGQfi~HDi~~t~~~~~~~~~~~~~~C~~~c~~~~~C~pI~ip~~Dp~~~~~~~Cm~f~RS~~~~~~~--- 170 (595)
T 3q9k_A 94 QNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTP--- 170 (595)
T ss_dssp EEEEHHHHHHHHHHHHHHCCCCBCCSCTTCSHHHHHHHHCCCBTTBCCEECCTTCHHHHHSCSEECCBCBCBSSCSS---
T ss_pred CCchHHHHHHHHHHHhhhhccCccccccccCCCcCccccccCCCCceeeeCCCCCCcccCCCceeEeecCCCcCCCC---
Confidence 899999999999999999998765433222 45678778999999999999999999843 3699999999999754
Q ss_pred cccCCCC--CcccccCCCccccCCcCCCCCHHHHHHhhcccCCCCceeecc-ccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy11171 161 MFWDTVQ--PREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGI-LSAANKPYLPIAGATEVDCRRDPTESNI 237 (372)
Q Consensus 161 ~~~~~~~--~reqiN~~T~~lD~S~vYGs~~~~~~~LR~~~~~~G~L~~~~-~~~~~~~~lP~~~~~~~~c~~~~~~~~~ 237 (372)
..+ +|||+|++|||||||+||||+++++++||+|++++|+||++. +..+|+.+||........|.........
T Consensus 171 ----~~~~~~reQiN~~Ts~lD~S~VYGss~~~~~~LR~~~~~~G~Lk~~~~~~~~g~~~lP~~~~~~~~c~~~~~~~~~ 246 (595)
T 3q9k_A 171 ----PYQSLAREQINAVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARV 246 (595)
T ss_dssp ----CCCSSCCCBEECSCSSSSCHHHHCSSHHHHHHTBCCSSTTCCBCCCSSCCBTTBCCCCBCCCSSCHHHHTCTTTCC
T ss_pred ----CCCcchHhhhccccceeeeeeccCCCHHHHHHHhCCCCCCceeecccccCCCCccCCCCCCCCCCcccccCCCCCC
Confidence 344 999999999999999999999999999999964459999873 2347889999987766677533223346
Q ss_pred cccccCCccccchhHHHHHHHHHHhhhhHHHHHHhhhCCCCChhhHHHHHHHHHHHhcceeeeeecchhccCchhhhhcC
Q psy11171 238 GCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKIN 317 (372)
Q Consensus 238 ~cf~aGD~R~ne~~~l~~lhtlflReHNria~~L~~~np~w~dE~lfqeAR~Iv~A~~Q~Ity~E~LP~iLG~~~~~~~~ 317 (372)
.||++||.|+||+|+|++|||||+|||||||++|+++||+|+||+|||||||||+|+||||||+||||+|||.+ |+++-
T Consensus 247 ~cf~aGD~R~ne~p~L~~lhtlflREHNria~~L~~~nP~W~dE~LfQeAR~Iv~A~~Q~Ity~E~LP~ilG~~-~~~~~ 325 (595)
T 3q9k_A 247 PCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE-MQKWI 325 (595)
T ss_dssp CCBCCSSTTTTSBHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG-HHHHS
T ss_pred cccccCCccccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHeeeeeHHHHHHHHhCch-hhhhC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998 65421
Q ss_pred ceehhhcccccCCcCCcee--eEEEcce-----eeecccccccC-CCCeeeee
Q psy11171 318 IEWKFIYGRMRRYVGSNRL--EVVIGTI-----IYDLRINFSCT-SKGQYSYS 362 (372)
Q Consensus 318 l~~~~~~g~~~~~~~~n~~--~~~~~~~-----~yr~~~~f~~~-~~g~~~~~ 362 (372)
-.... |....++.++|+| +++|||+ +++++++|... ..+++.++
T Consensus 326 ~~~~g-Y~~~v~p~i~neF~aafRfgHsli~~~~~~~~~~~~~~~~~~~~~L~ 377 (595)
T 3q9k_A 326 PPYQG-YNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLH 377 (595)
T ss_dssp CSCCC-CCTTSCCCCBTTHHHHGGGGGGGCCSEEECBCTTSSBCSTTCEEEGG
T ss_pred CCccC-CCCCCCCccHHHHHHHHHhHHhhCcchhhccCccccccCCCCceeHH
Confidence 11111 3333334444554 3345555 34556666543 23455444
No 2
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Probab=100.00 E-value=1.9e-62 Score=510.37 Aligned_cols=259 Identities=20% Similarity=0.239 Sum_probs=207.2
Q ss_pred CCCCCccccCCcccccccCCCCcccccCCcccccccCCcCcccccccCCCCCCChhhHhHhhhcCCCCCC-CCchhHHHH
Q psy11171 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVVSNELISTESITP-DPVITHMVM 90 (372)
Q Consensus 12 Nl~~p~~G~sd~G~y~~~a~tp~~Rllpp~Y~DG~~~Pr~~~~~~s~~g~~LP~pR~VS~~l~~~~~~~~-~~~~t~~~~ 90 (372)
--.+|+||+.. .+++|+|+|||.|+|| ..||++ ..+.+||+||+||++|+.++...+ +.+.|+|+|
T Consensus 102 ~~~~pswgs~~-------n~t~~~R~lpp~y~Dg-~~p~~~-----~~~~~LP~pr~vs~~l~~~~~~~p~~~~~s~l~~ 168 (553)
T 1q4g_A 102 AHDYISWESFS-------NVSYYTRILPSVPRDC-PTPMGT-----KGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFA 168 (553)
T ss_dssp SCSSCCHHHHH-------CTTBCEESSCCCCTTC-SBTTBS-----SSCSSCCCHHHHHHHHTBCSSCCBCTTCBBHHHH
T ss_pred ccCCCCCCCCC-------CCCceeeccCCCccCC-CCcccC-----CCCCCCCCHHHHHHHHhccCCCCCCCCCccHHHH
Confidence 45679998631 2699999999999999 588863 335899999999999997655444 578999999
Q ss_pred HHHHHHHhhcccCCCCCCcCcccCCCcCCCCCCCCCcccccCCCCCCCCCCCceeeeccCccccCCCCcccccCCCCCcc
Q psy11171 91 QWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVPHDDPRVKKRRCIDFIRSSAICGSGMTSMFWDTVQPRE 170 (372)
Q Consensus 91 ~wgQfi~HDl~~t~~~~~~~~~~g~~C~~~c~~~~~C~pI~vp~~Dp~~~~~~Cm~f~RS~~~~~~g~~~~~~~~~~~re 170 (372)
+|||||+|||+.|.. .+ ..+
T Consensus 169 ~fgQfi~HDi~~t~~-----------------------------~~-------------------------------~~~ 188 (553)
T 1q4g_A 169 FFAQHFTHQFFKTSG-----------------------------KM-------------------------------GPG 188 (553)
T ss_dssp HHHHHHHTTTCCBCT-----------------------------TT-------------------------------CTT
T ss_pred HHHHHHhhhhhcccc-----------------------------cc-------------------------------chh
Confidence 999999999987531 00 235
Q ss_pred cccCCCccccCCcCCCCCHHHHHHhhcccCCCCceeeccccCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCccccch
Q psy11171 171 QINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQ 250 (372)
Q Consensus 171 qiN~~T~~lD~S~vYGs~~~~~~~LR~~~~~~G~L~~~~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD~R~ne~ 250 (372)
++|++|||||||+||||+++++++||+| ++|+||++. .+|+.+||........|..........||++||.|+||+
T Consensus 189 ~~N~~T~~lD~S~vYGs~~~~~~~LR~~--~~G~Lk~~~--~~g~~~~P~~~~~~~~~~~~~~~~~~~cf~~GD~R~ne~ 264 (553)
T 1q4g_A 189 FTKALGHGVDLGHIYGDNLERQYQLRLF--KDGKLKYQM--LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLL 264 (553)
T ss_dssp BBSCTTCSSSCHHHHCSSHHHHHHHBCS--STTCBCCEE--ETTEEECCBTTTSCCCCCCCTTCCGGGSBCCSSTTGGGC
T ss_pred hcccccccccccccCCCCHHHHHhhhcC--CCCEecccC--CCCccCCCccCCCCCcccCCCCCCchhccccCccccCcC
Confidence 7899999999999999999999999999 579999873 367778887653322222222223467999999999999
Q ss_pred hHHHHHHHHHHhhhhHHHHHHhhhCCCCChhhHHHHHHHHHHHhcceeeeeecchhccCchhhhhcCceehhhcccccCC
Q psy11171 251 VGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKFIYGRMRRY 330 (372)
Q Consensus 251 ~~l~~lhtlflReHNria~~L~~~np~w~dE~lfqeAR~Iv~A~~Q~Ity~E~LP~iLG~~~~~~~~l~~~~~~g~~~~~ 330 (372)
|+|++|||||+|||||||++|+++||+|+||+|||||||||+|+||||||+||||.|+|...+..+ ++....+. .+
T Consensus 265 p~L~~lhtlflReHNria~~L~~~nP~W~DE~LFQeAR~Iv~a~~Q~I~~~EyLp~ilg~~~~~~~--dp~~~~~~--~~ 340 (553)
T 1q4g_A 265 PGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIEEYVQQLSGYFLQLKF--DPELLFGA--QF 340 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCC--CGGGGTTS--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc--CcccccCC--Cc
Confidence 999999999999999999999999999999999999999999999999999999999998765443 33322222 22
Q ss_pred cCCceeeEEEcceeeeccccccc
Q psy11171 331 VGSNRLEVVIGTIIYDLRINFSC 353 (372)
Q Consensus 331 ~~~n~~~~~~~~~~yr~~~~f~~ 353 (372)
...+.++.||+.+ ||| +.+.+
T Consensus 341 ~~~~~is~EF~~a-yR~-Hslip 361 (553)
T 1q4g_A 341 QYRNRIAMEFNQL-YHW-HPLMP 361 (553)
T ss_dssp CCCCCCBHHHHHH-TCC-GGGSC
T ss_pred ccCcchhHHHHHH-hcc-cccCC
Confidence 3457788888874 884 66654
No 3
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C* 1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Probab=100.00 E-value=6.6e-62 Score=497.17 Aligned_cols=230 Identities=40% Similarity=0.741 Sum_probs=187.9
Q ss_pred CcCCCCCCCCCcccccCCCCCCCCCCC-ceeeeccCccccCCCCcccccCCCCCcccccCCCccccCCcCCCCCHHHHHH
Q psy11171 116 DCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRV 194 (372)
Q Consensus 116 ~C~~~c~~~~~C~pI~vp~~Dp~~~~~-~Cm~f~RS~~~~~~g~~~~~~~~~~~reqiN~~T~~lD~S~vYGs~~~~~~~ 194 (372)
+|...|.++++|+||+||++||+|... +||+|+||+++|++| ..++|||+|++|||||||+||||+++++++
T Consensus 2 ~c~~~c~~~~~C~pI~ip~~Dp~~~~~~~cl~f~Rs~~~~~~g-------~~~~req~N~~T~~lD~S~vYGs~~~~~~~ 74 (466)
T 1d2v_C 2 NCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGS-------NITIRNQINALTSFVDASMVYGSEEPLARN 74 (466)
T ss_dssp CTTTCCCCCTTBCCEECCTTCSSCCCTTCEECCBCCCBSSTTC-------SSSCCCBEECSCSSSSCHHHHCSSHHHHHH
T ss_pred CCcccCCCCCCCcceeCCCCCCCcCCCCcceeeecCccccCCC-------CCCHHHHhhccccccccccCcCCCHHHHHH
Confidence 588889999999999999999999754 899999999999875 257999999999999999999999999999
Q ss_pred hhcccCCCCceeecc-ccCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCccccchhHHHHHHHHHHhhhhHHHHHHhh
Q psy11171 195 LRDIRNDNGFLRQGI-LSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRD 273 (372)
Q Consensus 195 LR~~~~~~G~L~~~~-~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD~R~ne~~~l~~lhtlflReHNria~~L~~ 273 (372)
||+|++++|+||++. ...+|+.+||.+...+..|..........||++||.|+||+|+|++|||||+|||||||++|++
T Consensus 75 LR~~~~~~G~Lk~~~~~~~~g~~~lP~~~~~~~~c~~~~~~~~~~cf~~GD~R~ne~p~l~~lhtlflReHNria~~L~~ 154 (466)
T 1d2v_C 75 LRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKS 154 (466)
T ss_dssp HBCCSSSSCCBCCCSSCCBTTBCCCCBCCCTTCSGGGGCTTTCCCCBCCSSTTTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCeeccCCccCCCCCcCCCCCCCCCCcccccccCCCcchhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999964459999873 2336888999886555567643223346799999999999999999999999999999999999
Q ss_pred hCCCCChhhHHHHHHHHHHHhcceeeeeecchhccCchhhhhcCceehhhcccccCCcCCcee--eEEEcce-----eee
Q psy11171 274 INPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKFIYGRMRRYVGSNRL--EVVIGTI-----IYD 346 (372)
Q Consensus 274 ~np~w~dE~lfqeAR~Iv~A~~Q~Ity~E~LP~iLG~~~~~~~~l~~~~~~g~~~~~~~~n~~--~~~~~~~-----~yr 346 (372)
+||+|+||+||||||+||+|+||||||+||||+|||.+.|+++--..+. |....++..+|+| +++|||+ +++
T Consensus 155 ~nP~W~DE~LFqeAR~Iv~a~~Q~I~~~EyLp~ilG~~~~~~~~~~~~g-y~~~v~p~isnEF~aafRfgHsli~~~~~~ 233 (466)
T 1d2v_C 155 LNPRWDGERLYQEARKIVGAMVQIITYRDYLPLVLGPTAMRKYLPTYRS-YNDSVDPRIANVFTNAFRYGHTLIQPFMFR 233 (466)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSCCCCC-CCTTSCCSCBHHHHHHGGGGGGGCCSEEEC
T ss_pred hCCCCChHHHHHHHHHHHHHHHHHHhHHHHHHHHhCchhhhhcCCcccC-CCCCCCCchhHHHHHHHhcccccCchhhcc
Confidence 9999999999999999999999999999999999999988775211111 3333344444555 3455555 345
Q ss_pred ccccccc
Q psy11171 347 LRINFSC 353 (372)
Q Consensus 347 ~~~~f~~ 353 (372)
|+++|..
T Consensus 234 ~~~~~~~ 240 (466)
T 1d2v_C 234 LDNRYQP 240 (466)
T ss_dssp BCTTSSB
T ss_pred ccccccc
Confidence 6666654
No 4
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...
Probab=100.00 E-value=1.2e-60 Score=497.94 Aligned_cols=262 Identities=22% Similarity=0.280 Sum_probs=207.5
Q ss_pred CCCCCC-CCCccccCCcccccccCCCCcccccCCcccccccCCcCcccccccCCCCCCChhhHhHhhhcCCCCCCCC-ch
Q psy11171 8 SGCNNL-MIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVVSNELISTESITPDP-VI 85 (372)
Q Consensus 8 GsCNNl-~~p~~G~sd~G~y~~~a~tp~~Rllpp~Y~DG~~~Pr~~~~~~s~~g~~LP~pR~VS~~l~~~~~~~~~~-~~ 85 (372)
-.||.. .+.+| +|.++ .++|+|+|||.|+||++ |+++ ..+..||+||+||++|+.+++..+++ +.
T Consensus 97 ~~~~~~~~Yrs~----dg~~N---~t~~~R~lPp~y~dg~~-P~g~-----~~~~~LP~pr~vs~~l~~r~~~~p~~~~~ 163 (587)
T 3nt1_A 97 PTYNVHYGYKSW----EAFSN---LSYYTRALPPVADDCPT-PMGV-----KGNKELPDSKEVLEKVLLRREFIPDPQGS 163 (587)
T ss_dssp CCBBTTBSSCCH----HHHHC---TTBCBBSSCCCCTTCSB-TTBS-----SSCSSCCCHHHHHHHHTBCSSCCBCTTCB
T ss_pred CCCCCCCCcccc----ccccC---CCeeecccCCccccCCC-cccc-----CCCCCCCCHHHHHHHHhcCCCcCCCCCCc
Confidence 367653 23334 44444 89999999999999986 9974 45789999999999999887777776 69
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCcCcccCCCcCCCCCCCCCcccccCCCCCCCCCCCceeeeccCccccCCCCcccccCC
Q psy11171 86 THMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVPHDDPRVKKRRCIDFIRSSAICGSGMTSMFWDT 165 (372)
Q Consensus 86 t~~~~~wgQfi~HDl~~t~~~~~~~~~~g~~C~~~c~~~~~C~pI~vp~~Dp~~~~~~Cm~f~RS~~~~~~g~~~~~~~~ 165 (372)
|+|+++|||||+|||+.|.. . + |+
T Consensus 164 s~l~~~fgQ~i~Hd~f~t~~---------~-------------------~--------~~-------------------- 187 (587)
T 3nt1_A 164 NMMFAFFAQHFTHQFFKTDH---------K-------------------R--------GP-------------------- 187 (587)
T ss_dssp BHHHHHHHHHHHTTTCCBCT---------T-------------------T--------CT--------------------
T ss_pred cHHHHHHHHHHhhhccccCC---------C-------------------C--------CC--------------------
Confidence 99999999999999987521 0 0 10
Q ss_pred CCCcccccCCCccccCCcCCCCCHHHHHHhhcccCCCCceeeccccCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCc
Q psy11171 166 VQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDI 245 (372)
Q Consensus 166 ~~~reqiN~~T~~lD~S~vYGs~~~~~~~LR~~~~~~G~L~~~~~~~~~~~~lP~~~~~~~~c~~~~~~~~~~cf~aGD~ 245 (372)
.+.|++|||||||+||||+++++++||+| ++|+||++. .+|+.+||...+....|..........||++||.
T Consensus 188 ----~~~n~~t~~lD~S~IYGss~~~~~~LR~~--~~G~Lk~~~--~~g~~~pP~~~~~~~~~~~~~~~~~~~cf~~GD~ 259 (587)
T 3nt1_A 188 ----GFTRGLGHGVDLNHIYGETLDRQHKLRLF--KDGKLKYQV--IGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQE 259 (587)
T ss_dssp ----TBBSCTTCSCCCHHHHCSSHHHHHHHBCS--STTCBCCEE--ETTEEECCBHHHHCCCCCCCTTSCGGGCBCCSST
T ss_pred ----ccccCccceeeeccCCCCCHHHHHhccCC--CCCeeeeec--CCCccCCCCCCCcccccccCCCCCcccccccCCc
Confidence 13578999999999999999999999999 689999873 4678888886433334544333345689999999
Q ss_pred cccchhHHHHHHHHHHhhhhHHHHHHhhhCCCCChhhHHHHHHHHHHHhcceeeeeecchhccCchhhhhcCceehhhcc
Q psy11171 246 RANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGMVKINIEWKFIYG 325 (372)
Q Consensus 246 R~ne~~~l~~lhtlflReHNria~~L~~~np~w~dE~lfqeAR~Iv~A~~Q~Ity~E~LP~iLG~~~~~~~~l~~~~~~g 325 (372)
|+||+|+|++|||||+|||||||++|+++||+|+||+||||||+||+|+||||||+||||+|||.+.+..++... .++
T Consensus 260 R~ne~pgL~alhtlflREHNriA~~L~~~nP~W~DE~LFQeAR~Iv~A~~Q~Ity~EyLP~ilG~~~~~~~dp~~--~~~ 337 (587)
T 3nt1_A 260 VFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPEL--LFN 337 (587)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCSSCCCCCGGG--GTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhheeeeHHHHHHHhcCcchhcccCccc--ccC
Confidence 999999999999999999999999999999999999999999999999999999999999999998766555432 233
Q ss_pred cccCCcCCceeeEEEcceeeecccccc
Q psy11171 326 RMRRYVGSNRLEVVIGTIIYDLRINFS 352 (372)
Q Consensus 326 ~~~~~~~~n~~~~~~~~~~yr~~~~f~ 352 (372)
. .+...++++.||+.. |+| +.+.
T Consensus 338 ~--~~~~~~~is~eF~~a-~~~-Hsli 360 (587)
T 3nt1_A 338 Q--QFQYQNRIASEFNTL-YHW-HPLL 360 (587)
T ss_dssp S--CCCSCCCCBHHHHHH-TCC-GGGS
T ss_pred C--CCCcCchHHHHHHHH-Hhc-cccC
Confidence 2 223456777788764 653 4443
No 5
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A* 4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Probab=99.97 E-value=2.6e-31 Score=219.55 Aligned_cols=92 Identities=35% Similarity=0.517 Sum_probs=84.6
Q ss_pred CCCCCCCCCCCCccccCCcccccccCCCCcccccCCcccccccCCcCcccccccCCCCCCChhhHhHhhhcCCC--CCCC
Q psy11171 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVVSNELISTES--ITPD 82 (372)
Q Consensus 5 ~~~GsCNNl~~p~~G~sd~G~y~~~a~tp~~Rllpp~Y~DG~~~Pr~~~~~~s~~g~~LP~pR~VS~~l~~~~~--~~~~ 82 (372)
-.+|+|||+++|.||+ |+++|+|+|||.|+||+++||+|+++++++|.+||+||+||++|+.... ..++
T Consensus 9 t~DG~cNNl~~P~~G~---------a~t~f~R~lpp~Y~DG~~~p~~~~~~~~~~g~~lP~pR~VS~~l~~~~~~~~~~~ 79 (104)
T 1d2v_A 9 TITGMCNNRRSPTLGA---------SNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSNEIVRFPTDQLTPD 79 (104)
T ss_dssp CSSCTTSSSSSTTTTC---------SSEECBCSSCCCCTTSSSCCTTSSTTCCBTTBCCCCHHHHHHHHTCCCGGGCCEE
T ss_pred CCCCCccCCCCCccCc---------CCCccccccCcccccCcccccccccccccCCCcCCCHHHHHHHHHhcccccCCCC
Confidence 3579999999999998 7999999999999999999999999999999999999999999997543 4567
Q ss_pred CchhHHHHHHHHHHHhhcccCCC
Q psy11171 83 PVITHMVMQWGQFLDHDLDHAIP 105 (372)
Q Consensus 83 ~~~t~~~~~wgQfi~HDl~~t~~ 105 (372)
.++|+|+|||||||+|||++|+.
T Consensus 80 ~~~t~~~~~wgQfi~HDl~~t~~ 102 (104)
T 1d2v_A 80 QERSLMFMQWGQLLDHDLDFTPE 102 (104)
T ss_dssp EEEEHHHHHHHHHHHHHHCCCCC
T ss_pred CchHHHHHHHHHHHHhhHhhcCC
Confidence 88999999999999999999874
No 6
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=38.19 E-value=9.6 Score=26.81 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcceeeeee
Q psy11171 283 LFHETRKIVGAMMQHITYTQ 302 (372)
Q Consensus 283 lfqeAR~Iv~A~~Q~Ity~E 302 (372)
=||.+||+ +-.+|+|.|+-
T Consensus 4 ~Fqv~Rr~-~NklQ~ilFn~ 22 (52)
T 2ju0_B 4 GFQVARRV-LNNLQTNLFNT 22 (52)
T ss_dssp TTHHHHHH-HHHHTCCSSCS
T ss_pred hhHHHHHH-HHHHHHHHhCC
Confidence 48999997 77899999983
No 7
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=27.13 E-value=42 Score=22.08 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=14.9
Q ss_pred HHHHHHhhhCCCCChhhH
Q psy11171 266 RMAKDLRDINPHWDGETL 283 (372)
Q Consensus 266 ria~~L~~~np~w~dE~l 283 (372)
|+-+++...|.-|+||+|
T Consensus 11 ~~~~ei~~RNrpltDEeL 28 (39)
T 3lqv_P 11 RWEREIDERNRPLSDEEL 28 (39)
T ss_dssp HHHHHHHHTTCCCCHHHH
T ss_pred HhhccchhhcCCCCHHHH
Confidence 456678889999999986
No 8
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=21.85 E-value=31 Score=20.16 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=6.9
Q ss_pred CCCCCCCCC
Q psy11171 7 GSGCNNLMI 15 (372)
Q Consensus 7 ~GsCNNl~~ 15 (372)
-|||||..-
T Consensus 4 igscn~fag 12 (26)
T 1rpb_A 4 IGSCNDFAG 12 (26)
T ss_dssp CSSBCSSSS
T ss_pred eecccCcCC
Confidence 489999873
No 9
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=21.76 E-value=39 Score=26.82 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhCCCCChhhHHHHHHH
Q psy11171 253 LLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRK 289 (372)
Q Consensus 253 l~~lhtlflReHNria~~L~~~np~w~dE~lfqeAR~ 289 (372)
|=.|-+-=+|+|-|+.++ ||.+||+..+
T Consensus 29 lE~LtV~AIr~HRrLl~~---------ae~~fq~w~~ 56 (102)
T 2hjd_A 29 IETLTANAIRLHRQLLEK---------ADQLFQVLPD 56 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 444445567999999887 6777776443
No 10
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=21.59 E-value=40 Score=26.79 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhCCCCChhhHHHHHHH
Q psy11171 253 LLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRK 289 (372)
Q Consensus 253 l~~lhtlflReHNria~~L~~~np~w~dE~lfqeAR~ 289 (372)
|=.|-+-=+|+|-|+.++ ||.+||+..+
T Consensus 29 lE~LtV~AIr~HRrLl~~---------ae~~fq~w~~ 56 (102)
T 1rfy_A 29 LETITIDAIRTHRRLVEK---------ADELFQALPE 56 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 444445567999999887 6777776443
Done!