RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11171
(372 letters)
>gnl|CDD|188658 cd09826, peroxidasin_like, Animal heme peroxidase domain of
peroxidasin and related proteins. Peroxidasin is a
secreted heme peroxidase which is involved in hydrogen
peroxide metabolism and peroxidative reactions in the
cardiovascular system. The domain co-occurs with
extracellular matrix domains and may play a role in the
formation of the extracellular matrix.
Length = 440
Score = 329 bits (845), Expect = e-110
Identities = 118/184 (64%), Positives = 145/184 (78%)
Query: 133 PHDDPRVKKRRCIDFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERS 192
P DDPR + RCI+F+RSSA+CGSG TS+ +++V PREQINQLT+YID S VYG ++E +
Sbjct: 1 PPDDPRRRGHRCIEFVRSSAVCGSGSTSLLFNSVTPREQINQLTSYIDASNVYGSSDEEA 60
Query: 193 RVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVG 252
LRD+ +D G LR GI+S A KP LP + +DCRRDP ES I C LAGD RANEQ+G
Sbjct: 61 LELRDLASDRGLLRVGIVSEAGKPLLPFERDSPMDCRRDPNESPIPCFLAGDHRANEQLG 120
Query: 253 LLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILGPDG 312
L +MHTLWLREHNR+A +L ++NPHWDGET++HETRKIVGA MQHITY+ WLP ILGP G
Sbjct: 121 LTSMHTLWLREHNRIASELLELNPHWDGETIYHETRKIVGAQMQHITYSHWLPKILGPVG 180
Query: 313 MVKI 316
M +
Sbjct: 181 MEML 184
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 291 bits (747), Expect = 2e-94
Identities = 111/261 (42%), Positives = 138/261 (52%), Gaps = 31/261 (11%)
Query: 58 YYGYEKPPARVVSNELIST--ESITPDPVITHMVMQWGQFLDHDLDHAIPATSLESWEGI 115
G P RVVSN+L++ I PDP +T M+ QWGQF+DHDL +
Sbjct: 42 VNGSPLPSPRVVSNKLLARKNGFIPPDPGLTLMLAQWGQFIDHDLTFTPHS--------- 92
Query: 116 DCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDTVQPREQINQ 174
C P CFP+ VP DP RC+ F RS+ CG+G + PREQINQ
Sbjct: 93 PCCAD--NHPECFPIPVPPGDPYFSPFGRCLPFFRSAPACGTGPSCNL-----PREQINQ 145
Query: 175 LTAYIDGSQVYGFTEERSRVLRDIRNDNGFLR--QGILSAANKPYLPIAGATEVDCRRDP 232
LT+Y+D SQVYG +EE + LR +G L+ K LP C
Sbjct: 146 LTSYLDLSQVYGSSEEEADKLRT--FKDGKLKVNGEFPPPNGKGLLPAPPPGPSGCLS-- 201
Query: 233 TESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVG 292
C LAGD R NE GL A+HTL+LREHNR+A +L+ +NPHW E LF E R IV
Sbjct: 202 ------CFLAGDSRVNENPGLTALHTLFLREHNRIADELKALNPHWSDEKLFQEARLIVI 255
Query: 293 AMMQHITYTQWLPHILGPDGM 313
A Q ITY ++LP +LGPD M
Sbjct: 256 AQYQKITYNEYLPALLGPDLM 276
>gnl|CDD|188657 cd09825, thyroid_peroxidase, Thyroid peroxidase (TPO). TPO is a
member of the animal heme peroxidase family, which is
expressed in the thyroid and involved in the processing
of iodine and iodine compounds. Specifically, TPO
oxidizes iodide via hydrogen peroxide to form active
iodine, which is then, for example, incorporated into
the tyrosine residues of thyroglobulin to yield mono-
and di-iodotyrosines.
Length = 565
Score = 292 bits (749), Expect = 2e-94
Identities = 124/276 (44%), Positives = 172/276 (62%), Gaps = 8/276 (2%)
Query: 46 FDKSKGWTKGLKYYGYEKPPARVVSNELI--STESITPDPVITHMVMQWGQFLDHDLDHA 103
F + GW K Y G+ P R VSN+++ S+ ++TPD + +HM+ WGQ++DHD+D
Sbjct: 19 FSEPVGWNKERLYNGFTLPSVREVSNKIMRTSSTAVTPDDLYSHMLTVWGQYIDHDIDFT 78
Query: 104 IPATSLESWEG-IDCKKSCAFSPPCFPMEVPHDDPRVKKRRCIDFIRSSAICGSGMTSMF 162
+ S + G DCK +C PCFP+++P +DPR+ R C+ F RSSA+CG+G TS
Sbjct: 79 PQSVSRTMFIGSTDCKMTCENQNPCFPIQLPSEDPRILGRACLPFFRSSAVCGTGDTSTL 138
Query: 163 WDTV---QPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLR-QGILSAANKPYL 218
+ + PREQIN LT++ID S VYG T +R LRD+ +D+G LR + + YL
Sbjct: 139 FGNLSLANPREQINGLTSFIDASTVYGSTLALARSLRDLSSDDGLLRVNSKFDDSGRDYL 198
Query: 219 PIAGATEVDCRRDP-TESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPH 277
P C DP + C LAGD RA+E + L A HTLWLREHNR+A+ L+ INPH
Sbjct: 199 PFQPEEVSSCNPDPNGGERVPCFLAGDGRASEVLTLTASHTLWLREHNRLARALKSINPH 258
Query: 278 WDGETLFHETRKIVGAMMQHITYTQWLPHILGPDGM 313
WDGE ++ E RKIVGA+ Q IT+ ++P ILGP+
Sbjct: 259 WDGEQIYQEARKIVGALHQIITFRDYIPKILGPEAF 294
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 225 bits (575), Expect = 1e-70
Identities = 73/150 (48%), Positives = 98/150 (65%), Gaps = 6/150 (4%)
Query: 169 REQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDC 228
REQ+NQ+T+++DGSQVYG +EE +R LR + G L+ + + LP + DC
Sbjct: 1 REQLNQVTSFLDGSQVYGSSEEEARKLRTFKG--GLLKTQRRN--GRELLPFSNNPTDDC 56
Query: 229 RRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETR 288
+ + C LAGD R NEQ GL +MHTL+LREHNR+A +L+ +NPHWD E LF E R
Sbjct: 57 SL--SSAGKPCFLAGDGRVNEQPGLTSMHTLFLREHNRIADELKKLNPHWDDERLFQEAR 114
Query: 289 KIVGAMMQHITYTQWLPHILGPDGMVKINI 318
KIV A MQHITY ++LP +LG + M K +
Sbjct: 115 KIVIAQMQHITYNEFLPILLGRELMEKFGL 144
>gnl|CDD|188654 cd09822, peroxinectin_like_bacterial, Uncharacterized family of
heme peroxidases, mostly bacterial. Animal heme
peroxidases are diverse family of enzymes which are not
restricted to animals. Members are also found in
metazoans, fungi, and plants, and also in bacteria -
like most members of this family of uncharacterized
proteins.
Length = 420
Score = 169 bits (431), Expect = 7e-49
Identities = 67/166 (40%), Positives = 90/166 (54%), Gaps = 18/166 (10%)
Query: 156 SGMTSMFW--------DTVQ----PREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNG 203
G++ FW D PREQIN +TAYIDGS VYG EER+ LR G
Sbjct: 23 RGLSDWFWVWGQFLDHDIDLTPDNPREQINAITAYIDGSNVYGSDEERADALRS--FGGG 80
Query: 204 FLRQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLRE 263
L+ + +A + LP A + ++ LAGD+RANE GL A+HTL++RE
Sbjct: 81 KLKTSVANAGD--LLPFNEAGLPNDNGGVPADDL--FLAGDVRANENPGLTALHTLFVRE 136
Query: 264 HNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWLPHILG 309
HNR+A +L NP E ++ R IV A +Q ITY ++LP +LG
Sbjct: 137 HNRLADELARRNPSLSDEEIYQAARAIVIAEIQAITYNEFLPALLG 182
Score = 47.7 bits (114), Expect = 6e-06
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 64 PPARVVSNELIS-TESITPDPVITHMVMQWGQFLDHDLDHA 103
P R +SN + TESI ++ WGQFLDHD+D
Sbjct: 3 PSPREISNAVADQTESIPNSRGLSDWFWVWGQFLDHDIDLT 43
>gnl|CDD|188656 cd09824, myeloperoxidase_like, Myeloperoxidases, eosinophil
peroxidases, and lactoperoxidases. This well conserved
family of animal heme peroxidases contains members with
somewhat diverse functions. Myeloperoxidases are
lysosomal proteins found in azurophilic granules of
neutrophils and the lysosomes of monocytes. They are
involved in the formation of microbicidal agents upon
activation of activated neutrophils (neutrophils
undergoing respiratory bursts as a result of
phagocytosis), by catalyzing the conversion of hydrogen
peroxide to hypochlorous acid. As a heme protein,
myeloperoxidase is responsible for the greenish tint of
pus, which is rich in neutrophils. Eosinophil
peroxidases are haloperoxidases as well, preferring
bromide over chloride. Expressed by eosinophil
granulocytes, they are involved in attacking
multicellular parasites and play roles in various
inflammatory diseases such as asthma. The haloperoxidase
lactoperoxidase is secreted from mucosal glands and
provides antibacterial activity by oxidizing a variety
of substrates such as bromide or chloride in the
presence of hydrogen peroxide.
Length = 411
Score = 166 bits (422), Expect = 1e-47
Identities = 71/149 (47%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Query: 169 REQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLR-QGILSAANKPYLPIAGATEVD 227
REQIN LT+++D S VYG ++ LR++ N G L + LP
Sbjct: 12 REQINALTSFVDASMVYGSEPSLAKXLRNLTNQLGLLAVNQRFTDNGLALLPFENLHNDP 71
Query: 228 CRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHET 287
C T +NI C LAGD R +E GL A+HTL LREHNR+A++L +NPHWDGETL+ E
Sbjct: 72 CALRNTSANIPCFLAGDTRVSENPGLAALHTLLLREHNRLARELHRLNPHWDGETLYQEA 131
Query: 288 RKIVGAMMQHITYTQWLPHILGPDGMVKI 316
RKIVGAM+Q ITY +LP ILG D ++
Sbjct: 132 RKIVGAMVQIITYRDYLPLILGEDAAARL 160
>gnl|CDD|188647 cd05396, An_peroxidase_like, Animal heme peroxidases and related
proteins. A diverse family of enzymes, which includes
prostaglandin G/H synthase, thyroid peroxidase,
myeloperoxidase, linoleate diol synthase,
lactoperoxidase, peroxinectin, peroxidasin, and others.
Despite its name, this family is not restricted to
metazoans: members are found in fungi, plants, and
bacteria as well.
Length = 370
Score = 146 bits (370), Expect = 1e-40
Identities = 60/167 (35%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 171 QINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLR--QGILSAANKPYLPIAGATEVDC 228
Q+N T Y+DGS +YG + +R LR + G L+ + + LP
Sbjct: 1 QLNARTPYLDGSSIYGSNPDVARALRTFKG--GLLKTNEVKGPSYGTELLPFNNPN--PS 56
Query: 229 RRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETR 288
C +AGD R NE + LLA+HTL+LREHNR+A L+ +P WD E L+ E R
Sbjct: 57 MGTIGLPPTRCFIAGDPRVNENLLLLAVHTLFLREHNRLADRLKKEHPEWDDERLYQEAR 116
Query: 289 KIVGAMMQHITYTQWLPHILGPDGMVKINIEWKFIYGRMRRYVGSNR 335
IV A Q ITY ++LP ILG + ++ F + YV S
Sbjct: 117 LIVIAQYQLITYNEYLPAILGKFTDPRDDLVLLFPDPDVVPYVLSEF 163
>gnl|CDD|188652 cd09820, dual_peroxidase_like, Dual oxidase and related animal heme
peroxidases. Animal heme peroxidases of the
dual-oxidase like subfamily play vital roles in the
innate mucosal immunity of gut epithelia. They provide
reactive oxygen species which help control infection.
Length = 558
Score = 115 bits (291), Expect = 2e-28
Identities = 62/190 (32%), Positives = 86/190 (45%), Gaps = 18/190 (9%)
Query: 128 FPMEVPHDDPRVKKRRC-----IDFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGS 182
F +E+P DP V C + F RS +G + PREQ+N++T++IDGS
Sbjct: 91 FNIEIPKGDP-VFDPECTGNIELPFQRSRYDKNTGYSPNN-----PREQLNEVTSWIDGS 144
Query: 183 QVYGFTEERSRVLRDIRNDNGFLRQG---ILSAANKPYLPIAGATEVDCRRDPTESNIGC 239
+YG ++ S LR G L G N LP+A T
Sbjct: 145 SIYGSSKAWSDALRSFSG--GRLASGDDGGFPRRNTNRLPLANPP--PPSYHGTRGPERL 200
Query: 240 LLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHIT 299
G+ R NE LL LW R HN +A+ + +P W E +F E RK V A Q+I
Sbjct: 201 FKLGNPRGNENPFLLTFGILWFRYHNYLAQRIAREHPDWSDEDIFQEARKWVIATYQNIV 260
Query: 300 YTQWLPHILG 309
+ +WLP +LG
Sbjct: 261 FYEWLPALLG 270
>gnl|CDD|188653 cd09821, An_peroxidase_bacterial_2, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 570
Score = 79.8 bits (197), Expect = 3e-16
Identities = 62/265 (23%), Positives = 88/265 (33%), Gaps = 60/265 (22%)
Query: 88 MVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVPHDDP-RVKKRRCID 146
+ +GQF DH LD IP + P +P DDP R
Sbjct: 16 WMTFFGQFFDHGLDF-IPKGGNGT----------VLIP------LPPDDPLYDLGRGTNG 58
Query: 147 FIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDI-------- 198
+G + E N T ++D +Q YG LR+
Sbjct: 59 MALDRGTNNAGPDGILGTADGEGEHTNVTTPFVDQNQTYGSHASHQVFLREYDGDGVATG 118
Query: 199 -----------RNDNGFLRQGILSAANKPY---LPIAGATEVDCRRDPTESNIGCL---- 240
R + FL +AA K L + P + L
Sbjct: 119 RLLEGATGGSARTGHAFLDDIAHNAAPKGGLGSLRDNPTEDPPGPGAPGSYDNELLDAHF 178
Query: 241 LAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDI----------------NPHWDGETLF 284
+AGD R NE +GL A+HT++ REHNR+ ++D N WDGE LF
Sbjct: 179 VAGDGRVNENIGLTAVHTVFHREHNRLVDQIKDTLLQSADLAFANEAGGNNLAWDGERLF 238
Query: 285 HETRKIVGAMMQHITYTQWLPHILG 309
R QH+ + ++ I
Sbjct: 239 QAARFANEMQYQHLVFEEFARRIQP 263
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 75.8 bits (187), Expect = 4e-15
Identities = 49/142 (34%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 168 PREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVD 227
P IN T + DGSQ+YG TEE + LR F G L LP
Sbjct: 83 PPTYINTNTHWWDGSQIYGSTEEAQKRLRT------FPPDGKLKLDADGLLP-------- 128
Query: 228 CRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHET 287
D L G N VGL +HTL++REHN + LR P W E LF +
Sbjct: 129 --VDEHTGLP---LTGFND-NWWVGLSLLHTLFVREHNAICDALRKEYPDWSDEQLFDKA 182
Query: 288 RKIVGAMMQHITYTQWLPHILG 309
R + A+M I +W P IL
Sbjct: 183 RLVNAALMAKIHTVEWTPAILA 204
Score = 33.0 bits (76), Expect = 0.27
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 63 KPPARVVSNELISTESITPDPVITHMVMQWGQFLDHD-LDHAIPAT 107
P RV+S L++ P + + W QF+ HD H P
Sbjct: 41 TPNPRVISRRLLARTEFKPATSLNLLAAAWIQFMVHDWFSHGPPTY 86
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 75.4 bits (186), Expect = 7e-15
Identities = 44/122 (36%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 179 IDGSQVYGFTEERSRVLRDIRNDNGFLR-QGILSAANKPYLPIAGATEVDCRR------- 230
ID SQ+YG TE R+ LR +G L+ Q I PYL G +++
Sbjct: 131 IDLSQIYGLTEARTHALR--LFKDGKLKSQMINGEEYPPYLFEDGGVKMEFPPLVPPLGD 188
Query: 231 DPTESNIGCLLA-GDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRK 289
+ T L A G R N GL ++T+WLREHNR+ L+ +P WD E LF R
Sbjct: 189 ELTPEREAKLFAVGHERFNLTPGLFMLNTIWLREHNRVCDILKKEHPDWDDERLFQTARN 248
Query: 290 IV 291
I+
Sbjct: 249 IL 250
>gnl|CDD|177921 PLN02283, PLN02283, alpha-dioxygenase.
Length = 633
Score = 49.8 bits (119), Expect = 1e-06
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 22/142 (15%)
Query: 172 INQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRD 231
+N T + DGS +YG E+ R +R ++ G L + L D
Sbjct: 207 LNIRTPWWDGSVIYGSNEKGLRRVRTFKD-------GKLKISEDGLL----------LHD 249
Query: 232 PTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIV 291
G ++GD+R N G+ + L+++EHN + L++ P +D E L+ R +
Sbjct: 250 ED----GIPISGDVR-NSWAGVSLLQALFVKEHNAVCDALKEEYPDFDDEELYRHARLVT 304
Query: 292 GAMMQHITYTQWLPHILGPDGM 313
A++ I W +L D +
Sbjct: 305 SAVIAKIHTIDWTVELLKTDTL 326
>gnl|CDD|188651 cd09819, An_peroxidase_bacterial_1, Uncharacterized bacterial
family of heme peroxidases. Animal heme peroxidases are
diverse family of enzymes which are not restricted to
metazoans; members are also found in fungi, and plants,
and in bacteria - like this family of uncharacterized
proteins.
Length = 465
Score = 47.0 bits (112), Expect = 9e-06
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 10/130 (7%)
Query: 184 VYGFTEERSRVLRDIRNDN--GFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLL 241
VYG + S L D N LR G S + G D R+ G L
Sbjct: 92 VYGGGPDGSPYLYDQATPNDGAKLRVGRESPGGPG--GLPGDGARDLPRNGQ----GTAL 145
Query: 242 AGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYT 301
GD R +E + + +H +LR HN + LR D LF E R++V Q +
Sbjct: 146 IGDPRNDENLIVAQLHLAFLRFHNAVVDALRAHGTPGD--ELFEEARRLVRWHYQWLVLN 203
Query: 302 QWLPHILGPD 311
+LP I PD
Sbjct: 204 DFLPRICDPD 213
Score = 28.1 bits (63), Expect = 8.9
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 92 WGQFLDHDL 100
GQF+DHD+
Sbjct: 53 LGQFIDHDI 61
>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Ig2_Robo: domain similar to
the second immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors. Robo receptors play a role in
the development of the central nervous system (CNS),
and are receptors of Slit protein. Slit is a repellant
secreted by the neural cells in the midline. Slit acts
through Robo to prevent most neurons from crossing the
midline from either side. Three mammalian Robo homologs
(robo1, -2, and -3), and three mammalian Slit homologs
(Slit-1,-2, -3), have been identified. Commissural
axons, which cross the midline, express low levels of
Robo; longitudinal axons, which avoid the midline,
express high levels of Robo. robo1, -2, and -3 are
expressed by commissural neurons in the vertebrate
spinal cord and Slits 1, -2, -3 are expressed at the
ventral midline. Robo-3 is a divergent member of the
Robo family which instead of being a positive regulator
of slit responsiveness, antagonizes slit responsiveness
in precrossing axons. The Slit-Robo interaction is
mediated by the second leucine-rich repeat (LRR) domain
of Slit and the two N-terminal Ig domains of Robo, Ig1
and Ig2. The primary Robo binding site for Slit2 has
been shown by surface plasmon resonance experiments and
mutational analysis to be is the Ig1 domain, while the
Ig2 domain has been proposed to harbor a weak secondary
binding site.
Length = 86
Score = 37.0 bits (86), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPARAI 45
NL+I SDEG Y+C+A + +GE +S AR
Sbjct: 52 NLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85
>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like. IG domains that cannot
be classified into one of IGv1, IGc1, IGc2, IG.
Length = 85
Score = 33.2 bits (76), Expect = 0.035
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I ++ D G Y C A + G S
Sbjct: 53 LTISNVTPEDSGTYTCAATNSSGSASS 79
>gnl|CDD|214652 smart00409, IG, Immunoglobulin.
Length = 85
Score = 33.2 bits (76), Expect = 0.035
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I ++ D G Y C A + G S
Sbjct: 53 LTISNVTPEDSGTYTCAATNSSGSASS 79
>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain.
Length = 90
Score = 31.8 bits (73), Expect = 0.10
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I +++ DEG Y C+A + GE ++
Sbjct: 58 LTISNVQPDDEGKYTCVATNSAGEAEA 84
>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like
domain of the receptor protein tyrosine phosphatase
(RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like:
domain similar to the second immunoglobulin (Ig)-like
domain found in the receptor protein tyrosine
phosphatase (RPTP)-F, also known as LAR. LAR belongs to
the RPTP type IIa subfamily. Members of this subfamily
are cell adhesion molecule-like proteins involved in
central nervous system (CNS) development. They have
large extracellular portions, comprised of multiple
Ig-like domains and two to nine fibronectin type III
(FNIII) domains, and a cytoplasmic portion having two
tandem phosphatase domains.
Length = 74
Score = 31.2 bits (70), Expect = 0.12
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
L I + E SD+G YEC+A + G S PA
Sbjct: 40 LQIENSEESDQGKYECVATNSAGTRYSAPA 69
>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain. Ig: immunoglobulin (Ig)
domain found in the Ig superfamily. The Ig superfamily
is a heterogenous group of proteins, built on a common
fold comprised of a sandwich of two beta sheets.
Members of this group are components of immunoglobulin,
neuroglia, cell surface glycoproteins, such as, T-cell
receptors, CD2, CD4, CD8, and membrane glycoproteins,
such as, butyrophilin and chondroitin sulfate
proteoglycan core protein. A predominant feature of
most Ig domains is a disulfide bridge connecting the
two beta-sheets with a tryptophan residue packed
against the disulfide bond.
Length = 74
Score = 31.3 bits (70), Expect = 0.14
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I ++ D G Y C+A + G V +
Sbjct: 45 LTISNVTLEDSGTYTCVASNSAGTVSA 71
>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig4_Neogenin: fourth
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of
vertebrate embryos in the growing nerve cells. It is
also expressed in other embryonic tissues, and may play
a general role in developmental processes such as cell
migration, cell-cell recognition, and tissue growth
regulation. Included in this group is the tumor
suppressor protein DCC, which is deleted in colorectal
carcinoma . DCC and neogenin each have four Ig-like
domains followed by six fibronectin type III domains, a
transmembrane domain, and an intracellular domain.
Length = 71
Score = 29.9 bits (67), Expect = 0.35
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+NL + + SDEG Y+C+A++ +G V++
Sbjct: 37 HNLQVLGLVKSDEGFYQCIAENDVGNVQA 65
>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain
of peroxidasin. Ig4_Peroxidasin: the fourth
immunoglobulin (Ig)-like domain in peroxidasin.
Peroxidasin has a peroxidase domain and interacting
extracellular motifs containing four Ig-like domains.
It has been suggested that peroxidasin is secreted, and
has functions related to the stabilization of the
extracellular matrix. It may play a part in various
other important processes such as removal and
destruction of cells, which have undergone programmed
cell death, and protection of the organism against
non-self.
Length = 69
Score = 29.5 bits (66), Expect = 0.54
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 13 LMIHSMEASDEGVYECMAKSPMG 35
L I + +D+G YEC+A++ +G
Sbjct: 38 LAIRDVGVADQGRYECVARNTIG 60
>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain
of peroxidasin. Ig3_Peroxidasin: the third
immunoglobulin (Ig)-like domain in peroxidasin.
Peroxidasin has a peroxidase domain and interacting
extracellular motifs containing four Ig-like domains.
It has been suggested that peroxidasin is secreted and
has functions related to the stabilization of the
extracellular matrix. It may play a part in various
other important processes such as removal and
destruction of cells which have undergone programmed
cell death, and protection of the organism against
non-self.
Length = 74
Score = 29.1 bits (65), Expect = 0.65
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVK 38
L I + D+G YEC A + +G +
Sbjct: 42 LRISRVALHDQGQYECQAVNIVGSQR 67
>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain. This domain is
found in antibodies as well as neural protein P0 and
CTL4 amongst others.
Length = 114
Score = 29.9 bits (67), Expect = 0.71
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 12 NLMIHSMEASDEGVYECMAKSP 33
+L I ++ SD G Y C +P
Sbjct: 80 SLTISNLRLSDSGTYTCAVSNP 101
>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain
of the L1 cell adhesion molecule (CAM).
Ig3_L1-CAM_like: domain similar to the third
immunoglobulin (Ig)-like domain of the L1 cell adhesion
molecule (CAM). L1 belongs to the L1 subfamily of cell
adhesion molecules (CAMs) and is comprised of an
extracellular region having six Ig-like domains and
five fibronectin type III domains, a transmembrane
region and an intracellular domain. L1 is primarily
expressed in the nervous system and is involved in its
development and function. L1 is associated with an
X-linked recessive disorder, X-linked hydrocephalus,
MASA syndrome, or spastic paraplegia type 1, that
involves abnormalities of axonal growth. This group
also contains the chicken neuron-glia cell adhesion
molecule, Ng-CAM and human neurofascin.
Length = 71
Score = 28.9 bits (65), Expect = 0.73
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVK 38
L I ++ D+G Y C A + +G +
Sbjct: 38 LKIDNVSEEDDGEYRCTASNSLGSAR 63
>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo
(roundabout) receptors and similar proteins. Ig1_Robo:
domain similar to the first immunoglobulin (Ig)-like
domain in Robo (roundabout) receptors. Robo receptors
play a role in the development of the central nervous
system (CNS), and are receptors of Slit protein. Slit
is a repellant secreted by the neural cells in the
midline. Slit acts through Robo to prevent most neurons
from crossing the midline from either side. Three
mammalian Robo homologs (robo1, -2, and -3), and three
mammalian Slit homologs (Slit-1,-2, -3), have been
identified. Commissural axons, which cross the midline,
express low levels of Robo; longitudinal axons, which
avoid the midline, express high levels of Robo. robo1,
-2, and -3 are expressed by commissural neurons in the
vertebrate spinal cord and Slits 1, -2, -3 are
expressed at the ventral midline. Robo-3 is a divergent
member of the Robo family which instead of being a
positive regulator of slit responsiveness, antagonizes
slit responsiveness in precrossing axons. The
Slit-Robo interaction is mediated by the second
leucine-rich repeat (LRR) domain of Slit and the two
N-terminal Ig domains of Robo, Ig1 and Ig2. The primary
Robo binding site for Slit2 has been shown by surface
plasmon resonance experiments and mutational analysis
to be is the Ig1 domain, while the Ig2 domain has been
proposed to harbor a weak secondary binding site.
Length = 100
Score = 29.4 bits (66), Expect = 0.79
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 21 SDEGVYECMAKSPMGEVKSQPA 42
SDEGVY C+A + +GE S+ A
Sbjct: 74 SDEGVYVCVAHNSLGEAVSRNA 95
>gnl|CDD|165016 PHA02633, PHA02633, hypothetical protein; Provisional.
Length = 63
Score = 28.8 bits (64), Expect = 0.81
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 10 CNNLMIHSMEASDEGVYECMAKS 32
CNN++I + SD G+Y C+ K+
Sbjct: 17 CNNMLILNPTQSDSGIYMCITKN 39
>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type.
Length = 63
Score = 28.1 bits (63), Expect = 1.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 13 LMIHSMEASDEGVYECMAKSPMG 35
L I S+ D G+Y C+A++ G
Sbjct: 41 LTIKSVSLEDSGLYTCVAENSAG 63
>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac
myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the
C5 immunoglobulin (Ig) domain of cardiac myosin binding
protein C (MyBP-C). MyBP_C consists of repeated
domains, Ig and fibronectin type 3, and various
linkers. Three isoforms of MYBP_C exist and are
included in this group: cardiac(c), and fast and slow
skeletal muscle (s) MyBP_C. cMYBP_C has insertions
between and inside domains and an additional
cardiac-specific Ig domain at the N-terminus. For
cMYBP_C an interaction has been demonstrated between
this C5 domain and the Ig C8 domain.
Length = 86
Score = 28.7 bits (64), Expect = 1.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 10 CNNLMIHSMEASDEGVYECMAKSPMGE 36
++ +I E DEGVY +P+GE
Sbjct: 51 LSSFVIEGAEREDEGVYTITVTNPVGE 77
>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin.
Ig1_Contactin: First Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four
fibronectin type III(FnIII) domains anchored to the
membrane by glycosylphosphatidylinositol. The first
four Ig domains form the intermolecular binding
fragment, which arranges as a compact U-shaped module
via contacts between Ig domains 1 and 4, and between Ig
domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play
a part in the neuronal processes of neurite outgrowth,
axon guidance and fasciculation, and neuronal
migration. This group also includes contactin-1 and
contactin-5. The different contactins show different
expression patterns in the central nervous system.
During development and in adulthood, contactin-2 is
transiently expressed in subsets of central and
peripheral neurons. Contactin-5 is expressed
specifically in the rat postnatal nervous system,
peaking at about 3 weeks postnatal, and a lack of
contactin-5 (NB-2) results in an impairment of neuronal
activity in the rat auditory system. Contactin-5 is
highly expressed in the adult human brain in the
occipital lobe and in the amygdala. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 91
Score = 29.0 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 12 NLMIHS-MEASDEGVYECMAKSPMGEVKSQPA 42
NL+I + +A D G Y+C+A + +G V S+ A
Sbjct: 59 NLVISNPSKAKDAGRYQCLASNIVGTVLSREA 90
>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in
neogenin and similar proteins. Ig1_Neogenin: first
immunoglobulin (Ig)-like domain in neogenin and related
proteins. Neogenin is a cell surface protein which is
expressed in the developing nervous system of
vertebrate embryos in the growing nerve cells. It is
also expressed in other embryonic tissues, and may play
a general role in developmental processes such as cell
migration, cell-cell recognition, and tissue growth
regulation. Included in this group is the tumor
suppressor protein DCC, which is deleted in colorectal
carcinoma . DCC and neogenin each have four Ig-like
domains followed by six fibronectin type III domains, a
transmembrane domain, and an intracellular domain.
Length = 95
Score = 28.6 bits (64), Expect = 1.7
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 10/45 (22%)
Query: 5 PEGSGCNNLMIHSMEAS-----DEGVYECMAK-SPMGEVKSQPAR 43
P GS L+I S+ S DEG Y+C+A+ +G + S+ AR
Sbjct: 52 PNGS----LLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTAR 92
>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2.
Ig1_Contactin-2: First Ig domain of the neural cell
adhesion molecule contactin-2-like. Contactins are
comprised of six Ig domains followed by four
fibronectin type III (FnIII) domains anchored to the
membrane by glycosylphosphatidylinositol. Contactin-2
(TAG-1, axonin-1) facilitates cell adhesion by
homophilic binding between molecules in apposed
membranes. It may play a part in the neuronal processes
of neurite outgrowth, axon guidance and fasciculation,
and neuronal migration. The first four Ig domains form
the intermolecular binding fragment, which arranges as
a compact U-shaped module by contacts between IG
domains 1 and 4, and domains 2 and 3. The different
contactins show different expression patterns in the
central nervous system. During development and in
adulthood, contactin-2 is transiently expressed in
subsets of central and peripheral neurons. Contactin-2
is also expressed in retinal amacrine cells in the
developing chick retina, corresponding to the period of
formation and maturation of AC processes.
Length = 94
Score = 28.4 bits (63), Expect = 1.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 12 NLMIHS-MEASDEGVYECMAKSPMGEVKSQPARAIF 46
NL+I++ +A D G Y+C+A + G V S+ A F
Sbjct: 59 NLVINNPQKARDAGSYQCLAINRCGTVVSREANLRF 94
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 30.3 bits (68), Expect = 2.0
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 16/123 (13%)
Query: 52 WTKGLKYY---GYEKPPARVVSNELISTESITPDPVITHMVMQWGQFLDHDLD--HAIPA 106
W + G K P + S++ T + + M+W QFL+H L +
Sbjct: 466 WQGKFMNFTRNGSRKQPVQASSSDAAQTGVFEGVAELEKLRMEWNQFLEHLLKKGQKVLV 525
Query: 107 TSLESWEGIDCKKSCAFSPPCFPMEVPHDDPRVKKRRCIDFIRSSAICGSGMTSMFWDTV 166
T L S E C C +K + ++ +A+ + S + +
Sbjct: 526 THLRSCELTSCSPHGVVVMTC-----------CRKFSYEELMQDAALLSKEIESFYGIPL 574
Query: 167 QPR 169
+ +
Sbjct: 575 KLQ 577
>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1.
Ig3_Contactin-1: Third Ig domain of the neural cell
adhesion molecule contactin-1. Contactins are comprised
of six Ig domains followed by four fibronectin type III
(FnIII) domains anchored to the membrane by
glycosylphosphatidylinositol. Contactin-1 is
differentially expressed in tumor tissues and may
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 88
Score = 28.1 bits (62), Expect = 2.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I +++ DEG YEC A++ G+ K Q
Sbjct: 55 LKIFNIQPEDEGTYECEAENIKGKDKHQ 82
>gnl|CDD|143204 cd05727, Ig2_Contactin-2-like, Second Ig domain of the neural
cell adhesion molecule contactin-2 and similar
proteins. Ig2_Contactin-2-like: second Ig domain of
the neural cell adhesion molecule contactin-2.
Contactins are comprised of six Ig domains followed by
four fibronectin type III (FnIII) domains anchored to
the membrane by glycosylphosphatidylinositol.
Contactin-2 (aliases TAG-1, axonin-1) facilitates cell
adhesion by homophilic binding between molecules in
apposed membranes. The first four Ig domains form the
intermolecular binding fragment which arranges as a
compact U-shaped module by contacts between Ig domains
1 and 4, and domains 2 and 3. It has been proposed that
a linear zipper-like array forms, from contactin-2
molecules alternatively provided by the two apposed
membranes.
Length = 96
Score = 28.3 bits (63), Expect = 2.5
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 12 NLMIHSMEASDEGVYECMAKSPM 34
NL I +EASD G Y C SP
Sbjct: 61 NLYIAKVEASDRGNYSCFVSSPS 83
>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin.
Ig5_Contactin_like: Fifth Ig domain of contactins.
Contactins are neural cell adhesion molecules and are
comprised of six Ig domains followed by four
fibronectin type III(FnIII) domains anchored to the
membrane by glycosylphosphatidylinositol. The first
four Ig domains form the intermolecular binding
fragment, which arranges as a compact U-shaped module
via contacts between Ig domains 1 and 4, and between Ig
domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play
a part in the neuronal processes of neurite outgrowth,
axon guidance and fasciculation, and neuronal
migration. This group also includes contactin-1 and
contactin-5. The different contactins show different
expression patterns in the central nervous system.
During development and in adulthood, contactin-2 is
transiently expressed in subsets of central and
peripheral neurons. Contactin-5 is expressed
specifically in the rat postnatal nervous system,
peaking at about 3 weeks postnatal, and a lack of
contactin-5 (NB-2) results in an impairment of neuronal
act ivity in the rat auditory system. Contactin-5 is
highly expressed in the adult human brain in the
occipital lobe and in the amygdala. Contactin-1 is
differentially expressed in tumor tissues and may,
through a RhoA mechanism, facilitate invasion and
metastasis of human lung adenocarcinoma.
Length = 73
Score = 27.4 bits (61), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKS 39
+L I ++ SDEG Y C A++ G+ S
Sbjct: 40 SLEILNVTKSDEGKYTCFAENFFGKANS 67
>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain. This domain contains
immunoglobulin-like domains.
Length = 80
Score = 27.4 bits (61), Expect = 3.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQP 41
S N ++ A D G Y C+A + G S P
Sbjct: 42 SSQNGFFTPNVSAEDSGTYTCVASNGGGGKTSNP 75
>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of
protein tyrosine kinase (PTK) 7, also known as CCK4.
Ig2_PTK7: domain similar to the second immunoglobulin
(Ig)-like domain in protein tyrosine kinase (PTK) 7,
also known as CCK4. PTK7 is a subfamily of the receptor
protein tyrosine kinase family, and is referred to as
an RPTK-like molecule. RPTKs transduce extracellular
signals across the cell membrane, and play important
roles in regulating cell proliferation, migration, and
differentiation. PTK7 is organized as an extracellular
portion having seven Ig-like domains, a single
transmembrane region, and a cytoplasmic tyrosine
kinase-like domain. PTK7 is considered a pseudokinase
as it has several unusual residues in some of the
highly conserved tyrosine kinase (TK) motifs; it is
predicted to lack TK activity. PTK7 may function as a
cell-adhesion molecule. PTK7 mRNA is expressed at high
levels in placenta, melanocytes, liver, lung, pancreas,
and kidney. PTK7 is overexpressed in several cancers,
including melanoma and colon cancer lines.
Length = 77
Score = 27.2 bits (60), Expect = 3.5
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L + S D G+Y C A + G V S
Sbjct: 39 TLTLRSAGPDDSGLYYCCAHNAFGSVCSS 67
>gnl|CDD|143279 cd05871, Ig_Semaphorin_classIII, Immunoglobulin (Ig)-like domain
of class III semaphorin. Ig_Semaphorin_class III;
Immunoglobulin (Ig)-like domain of class III
semaphorins. Semaphorins are classified into various
classes on the basis of structural features additional
to the Sema domain. Class III semaphorins are a
vertebrate class having a Sema domain, an Ig domain, a
short basic domain, and are secreted. They have been
shown to be axonal guidance cues and have a part in the
regulation of the cardiovascular, immune and
respiratory systems. Sema3A, the prototype member of
this class III subfamily, induces growth cone collapse
and is an inhibitor of axonal sprouting. In perinatal
rat cortex as a chemoattractant, it functions to
direct, for pyramidal neurons, the orientated extension
of apical dendrites. It may play a role, prior to the
development of apical dendrites, in signaling the
radial migration of newborn cortical neurons towards
the upper layers. Sema3A selectively inhibits vascular
endothelial growth factor receptor (VEGF)-induced
angiogenesis and induces microvascular permeability.
This group also includes Sema3B, -C, -D, -E, -G.
Length = 91
Score = 27.3 bits (61), Expect = 3.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 13 LMIHSMEASDEGVYECMA 30
L++ S++ SD GVY C A
Sbjct: 55 LLLRSLQRSDAGVYTCTA 72
>gnl|CDD|178701 PLN03156, PLN03156, GDSL esterase/lipase; Provisional.
Length = 351
Score = 28.9 bits (65), Expect = 4.2
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 19/48 (39%)
Query: 150 SSAICGSGMTSM-------------------FWDTVQPREQINQLTAY 178
S A C +GM M FWD+ P E+ NQ+ A
Sbjct: 293 SVACCATGMFEMGYLCNRNNPFTCSDADKYVFWDSFHPTEKTNQIIAN 340
>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II
(D2) of the human basement membrane heparan sulfate
proteoglycan perlecan, also known as HSPG2.
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like
domain II (D2) of the human basement membrane heparan
sulfate proteoglycan perlecan, also known as HSPG2.
Perlecan consists of five domains. Domain I has three
putative heparan sulfate attachment sites; domain II
has four LDL receptor-like repeats, and one Ig-like
repeat; domain III resembles the short arm of laminin
chains; domain IV has multiple Ig-like repeats (21
repeats in human perlecan); and domain V resembles the
globular G domain of the laminin A chain and internal
repeats of EGF. Perlecan may participate in a variety
of biological functions including cell binding,
LDL-metabolism, basement membrane assembly and
selective permeability, calcium binding, and growth-
and neurite-promoting activities.
Length = 78
Score = 27.1 bits (60), Expect = 4.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 9 GCNNLMIHSMEASDEGVYECMAKSPMGEVKSQP 41
G L I ++ SD+G Y C A + G V P
Sbjct: 40 GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP 72
>gnl|CDD|214512 smart00091, PAS, PAS domain. PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels.
Length = 67
Score = 26.6 bits (59), Expect = 4.7
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 310 PDGMVKINIEWKFIY--GRMRRYVGSNRLEVVIGTIIYDL 347
PDG+ ++++ + +Y +G + E +IG + +L
Sbjct: 11 PDGIFVLDLDGRILYANPAAEELLGYSP-EELIGKSLLEL 49
>gnl|CDD|234000 TIGR02760, TraI_TIGR, conjugative transfer relaxase protein TraI.
This protein is a component of the relaxosome complex.
In the process of conjugative plasmid transfer the
realaxosome binds to the plasmid at the oriT (origin of
transfer) site. The relaxase protein TraI mediates the
single-strand nicking and ATP-dependent unwinding
(relaxation, helicase activity) of the plasmid molecule.
These two activities reside in separate domains of the
protein.
Length = 1960
Score = 29.1 bits (65), Expect = 4.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 266 RMAKDLRDINPHWDGETLFHETRKIVGAMMQHIT 299
M KD DG+T F TR +V AM +H T
Sbjct: 120 EMEKDAAQARQTVDGKTEFINTRNLVFAMFRHKT 153
>gnl|CDD|233979 TIGR02710, TIGR02710, CRISPR-associated protein, TIGR02710 family.
Members of this family are found, exclusively in the
vicinity of CRISPR repeats and other CRISPR-associated
(cas) genes, in Methanothermobacter thermautotrophicus
(Archaea), Thermus thermophilus (Deinococcus-Thermus),
Chloroflexus aurantiacus (Chloroflexi), and
Thermomicrobium roseum (Thermomicrobia) [Mobile and
extrachromosomal element functions, Other].
Length = 380
Score = 28.7 bits (64), Expect = 5.7
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 11/122 (9%)
Query: 161 MFWDTVQPREQINQLTAYID----GSQVYGFTEERSRVLRD--IRNDNGFLRQGILSAAN 214
+ WD + E ++ L + QV E + R+ I + R G A
Sbjct: 180 LHWDRFEHEEALDYLNDPLPERLALYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKR 239
Query: 215 KPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDI 274
+P+LP+ G + R T+ A RA E L+ L R + D I
Sbjct: 240 RPFLPLLGDLLANAERRATQGRYDDAAARLYRALE---LIVQIRLEERGKYGLDTD--SI 294
Query: 275 NP 276
NP
Sbjct: 295 NP 296
>gnl|CDD|151156 pfam10640, Pox_ATPase-GT, mRNA capping enzyme N-terminal, ATPase
and guanylyltransferase. This domain is the N-terminus
of the large subunit viral mRNA capping enzyme, and
carries both the ATPase and the guanylyltransferase
activities of the enzyme. The guanylyltransferase
enzymatic region runs from residues 242
(leucine)-273(arginine), the core of the acitve site
being the lysine residue at 260. The ATPase activity is
at the very N-terminal part of the domain.
Length = 314
Score = 28.0 bits (63), Expect = 8.3
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 294 MMQHITYTQW------LPHILGPDGMVKINIEWKFIYGRMRRYVGSNRLEVV--IGTIIY 345
++ I W + +++ + E K I+ ++Y+ S RLE+V + I
Sbjct: 72 LVDSIDNIIWEKKTLVSEKKIDEGCLIRHSTEEKHIFLDYKKYLSSIRLELVNLVQAKIK 131
Query: 346 DLRINF 351
++ ++F
Sbjct: 132 NIVVDF 137
>gnl|CDD|143192 cd05715, Ig_P0-like, Immunoglobulin (Ig)-like domain of Protein
zero (P0) and similar proteins. Ig_P0ex-like: domain
similar to the immunoglobulin (Ig) domain of Protein
zero (P0). P0 accounts for over 50% of the total protein
in peripheral nervous system (PNS) myelin. P0 is a
single-pass transmembrane glycoprotein with a highly
basic intracellular domain and an extracellular Ig
domain. The extracellular domain of P0 (P0-ED) is
similar to the Ig variable domain, carrying one acceptor
sequence for N-linked glycosylation. P0 plays a role in
membrane adhesion in the spiral wraps of the myelin
sheath. The intracellular domain is thought to mediate
membrane apposition of the cytoplasmic faces and may,
through electrostatic interactions, interact directly
with lipid headgroups. It is thought that homophilic
interactions of the P0 extracellular domain mediate
membrane juxtaposition in the extracellular space of PNS
myelin. This group also contains the Ig domain of Sodium
channel subunit beta-2 (SCN2B), and of epithelial V-like
antigen 1 (EVA). EVA, also known as myelin protein
zero-like 2, is an adhesion molecule, which may play a
role in structural organization of the thymus and early
lymphocyte development. SCN2B subunits play a role in
determining sodium channel density and function in
neurons,and in control of electrical excitability in
the brain.
Length = 116
Score = 26.9 bits (60), Expect = 9.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 13 LMIHSMEASDEGVYECMAKSP 33
++IH+++ +D G Y C K+P
Sbjct: 82 IVIHNLQFTDNGTYTCDVKNP 102
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.433
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,241,545
Number of extensions: 1841051
Number of successful extensions: 1287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1267
Number of HSP's successfully gapped: 50
Length of query: 372
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 274
Effective length of database: 6,590,910
Effective search space: 1805909340
Effective search space used: 1805909340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)