RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11171
(372 letters)
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 241 bits (616), Expect = 1e-74
Identities = 102/312 (32%), Positives = 156/312 (50%), Gaps = 19/312 (6%)
Query: 10 CNNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVV 69
CNN ++ A++ + + + P GWT+ G+ P AR V
Sbjct: 28 CNNRRSPALGAANR-ALARWLPAEYEDGLALPF--------GWTQRKTRNGFRVPLAREV 78
Query: 70 SNELI--STESITPDPVITHMVMQWGQFLDHDLDHAIPATSLES-WEGIDCKKSCAFSPP 126
SN+++ E D + + MQWGQ +DHDLD A + C++ C
Sbjct: 79 SNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDN 138
Query: 127 CFPMEVPHDDPRVK-KRRCIDFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVY 185
CFP+ P +DP++K + +C+ F R+ +C + REQIN +T+++D S VY
Sbjct: 139 CFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQS-----LAREQINAVTSFLDASLVY 193
Query: 186 GFTEERSRVLRDIRNDNGFLRQGI-LSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGD 244
G + LR++ + G + YLP C T + + C LAGD
Sbjct: 194 GSEPSLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGD 253
Query: 245 IRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYTQWL 304
RA+EQ+ L HTL LREHNR+A++L+ +NPHW+GE L+ E RKI+GA +Q IT+ +L
Sbjct: 254 FRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYL 313
Query: 305 PHILGPDGMVKI 316
P +LG + I
Sbjct: 314 PIVLGSEMQKWI 325
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 218 bits (556), Expect = 3e-67
Identities = 88/203 (43%), Positives = 117/203 (57%), Gaps = 9/203 (4%)
Query: 115 IDCKKSCAFSPPCFPMEVPHDDPRVKKR-RCIDFIRSSAICGSGMTSMFWDTVQPREQIN 173
++C+ SC PPCFP+++P +DPR+K + CI F RS C R QIN
Sbjct: 1 VNCETSCVQQPPCFPLKIPPNDPRIKNQADCIPFFRSCPACPGSNI-------TIRNQIN 53
Query: 174 QLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAAN-KPYLPIAGATEVDCRRDP 232
LT+++D S VYG E +R LR++ N G L N + LP + C
Sbjct: 54 ALTSFVDASMVYGSEEPLARNLRNMSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTN 113
Query: 233 TESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVG 292
+ I C LAGD R++E L +MHTL LREHNR+A +L+ +NP WDGE L+ E RKIVG
Sbjct: 114 RSARIPCFLAGDTRSSEMPELTSMHTLLLREHNRLATELKSLNPRWDGERLYQEARKIVG 173
Query: 293 AMMQHITYTQWLPHILGPDGMVK 315
AM+Q ITY +LP +LGP M K
Sbjct: 174 AMVQIITYRDYLPLVLGPTAMRK 196
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 186 bits (474), Expect = 2e-54
Identities = 55/323 (17%), Positives = 87/323 (26%), Gaps = 80/323 (24%)
Query: 3 HPPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYE 62
PP + ++ + S E+ Y + P +
Sbjct: 95 SPPTYNIAHDYI--SWESFSNVSYYTRILPSVPRDCPTPMGT-------------KGKKQ 139
Query: 63 KPPARVVSNELISTESITPDPV-ITHMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSC 121
P A +S + PDP M + Q H
Sbjct: 140 LPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH----------------------- 176
Query: 122 AFSPPCFPMEVPHDDPRVKKRRCIDFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDG 181
F ++S L +D
Sbjct: 177 ------------------------QFFKTSGKM-------------GPGFTKALGHGVDL 199
Query: 182 SQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLL 241
+YG ER LR +G L+ +L+ + Y P V +
Sbjct: 200 GHIYGDNLERQYQLR--LFKDGKLKYQMLN--GEVYPPSVEEAPVLMHYPRGIPPQSQMA 255
Query: 242 AGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETRKIVGAMMQHITYT 301
G GL+ T+WLREHNR+ L+ +P W E LF R I+ I
Sbjct: 256 VGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETIKIVIE 315
Query: 302 QWLPHILGPDGMVKINIEWKFIY 324
+++ + G +K + E F
Sbjct: 316 EYVQQLSGYFLQLKFDPELLFGA 338
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 174 bits (441), Expect = 2e-49
Identities = 46/209 (22%), Positives = 74/209 (35%), Gaps = 20/209 (9%)
Query: 123 FSPPCFPMEVPHDDPRVKKRRCIDFIRSSAI-CGSGMTSMFW-------------DTVQP 168
+P D + + +R I G MF D +
Sbjct: 129 PTPMGVKGNKELPDSKEVLEKV--LLRREFIPDPQGSNMMFAFFAQHFTHQFFKTDHKRG 186
Query: 169 REQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLRQGILSAANKPYLPIAGATEVDC 228
L +D + +YG T +R LR +G L+ ++ + Y P T+V+
Sbjct: 187 PGFTRGLGHGVDLNHIYGETLDRQHKLRL--FKDGKLKYQVIG--GEVYPPTVKDTQVEM 242
Query: 229 RRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHNRMAKDLRDINPHWDGETLFHETR 288
P G GL+ T+WLREHNR+ L+ +P W E LF +R
Sbjct: 243 IYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSR 302
Query: 289 KIVGAMMQHITYTQWLPHILGPDGMVKIN 317
I+ I ++ H+ G +K +
Sbjct: 303 LILIGETIKIVIEDYVQHLSGYHFKLKFD 331
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A*
4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Length = 104
Score = 72.0 bits (176), Expect = 7e-16
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 10 CNNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVV 69
CNN ++ AS+ + + + S P GWT G+K G+ AR V
Sbjct: 14 CNNRRSPTLGASNRA-FVRWLPAEYEDGFSLP--------YGWTPGVKRNGFPVALARAV 64
Query: 70 SNELIS--TESITPDPVITHMVMQWGQFLDHDLDHA 103
SNE++ T+ +TPD + M MQWGQ LDHDLD
Sbjct: 65 SNEIVRFPTDQLTPDQERSLMFMQWGQLLDHDLDFT 100
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 47.2 bits (112), Expect = 2e-06
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 4 PPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+G+ + + D G Y C+AK+ +G+ S+ A
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHAS 101
Score = 43.3 bits (102), Expect = 4e-05
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
NL+I ++E DEG Y+C+A++ +G +S A+
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAK 202
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 45.7 bits (108), Expect = 6e-06
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L I S++ SD G Y+C+ SQP
Sbjct: 69 QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGY 100
Score = 34.1 bits (78), Expect = 0.045
Identities = 6/40 (15%), Positives = 11/40 (27%)
Query: 4 PPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+H + + C A + G S+ A
Sbjct: 149 ATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTAT 188
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 46.1 bits (109), Expect = 1e-05
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 3 HPPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
EGS L+ +ASDEG Y+C A++P G S+
Sbjct: 58 RKDEGS----LVFLRPQASDEGHYQCFAETPAGVASSRVIS 94
Score = 38.4 bits (89), Expect = 0.003
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ L+I ++ D+G Y C A + G+ +
Sbjct: 360 SGLVIKGVKNGDKGYYGCRATNEHGDKYFE 389
Score = 38.4 bits (89), Expect = 0.003
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L+ + DEGVY C + +G+ + +
Sbjct: 270 KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLK 302
Score = 32.2 bits (73), Expect = 0.27
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 11 NNLMIHS---MEASDEGVYECMAKSPMGEVKSQPA 42
NL + SD Y C AK+ + +
Sbjct: 161 GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLV 195
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 3e-05
Identities = 56/425 (13%), Positives = 108/425 (25%), Gaps = 167/425 (39%)
Query: 34 MGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVVSNELISTESITPDPVITHMVMQW- 92
GE + Q + + + P ++S E I ++ D V + + W
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 93 ---------GQFLDHDLDHAIP-----------ATSLESWEGIDCKKSCAFSPPCF-PME 131
+F++ L S+ + I+ + F
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 132 VPHDDPRVKKRRCIDFIRSSAIC------GSGMTSM------------------FWDTV- 166
V P +K R+ + +R + GSG T + FW +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 167 ---QPREQINQL-----------TAYIDGSQVY----GFTEERSR-------------VL 195
P + L T+ D S + R VL
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 196 RDIRNDNGFLRQGILSAANKPYLPIAGATEVDCR-----RDPTESNIGCLLAGDIRAN-- 248
+++N +A N + C+ R ++ L+ +
Sbjct: 251 LNVQNAK------AWNAFN-----------LSCKILLTTRFKQVTDF---LSAATTTHIS 290
Query: 249 -----------EQVGLLAMHTLWLREHNRMAKDLR----DINPHWDGETLFHETRKIVGA 293
E LL +L + +DL NP I+
Sbjct: 291 LDHHSMTLTPDEVKSLLL---KYL---DCRPQDLPREVLTTNP------RRL---SIIAE 335
Query: 294 MMQH--ITYTQWLPHILGPDGMVKINIEWKFIYGRMRRYVGSNRLEVVIGTII-----YD 346
++ T+ W ++V ++L +I + + +
Sbjct: 336 SIRDGLATWDNW-------------------------KHVNCDKLTTIIESSLNVLEPAE 370
Query: 347 LRINF 351
R F
Sbjct: 371 YRKMF 375
Score = 43.3 bits (101), Expect = 1e-04
Identities = 50/298 (16%), Positives = 88/298 (29%), Gaps = 68/298 (22%)
Query: 87 HMVMQWGQFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVPHDDPR-VKKRRCI 145
HM + G+ + + + DCK +V D P+ + + I
Sbjct: 6 HMDFETGE-HQYQYKDILSVFEDAFVDNFDCK------------DVQ-DMPKSILSKEEI 51
Query: 146 DFIRSSAICGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFL 205
D I S SG +FW + +E++ V F EE VLR + FL
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEM-----------VQKFVEE---VLRI---NYKFL 94
Query: 206 RQGILSAANKPYLPIAGATEVDCRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
I + +P + E +RD ++ ++ + L L LR
Sbjct: 95 MSPIKTEQRQPSMMTRMYIE---QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 266 R-----M---------AKDLRDINP--------HWDGETLFHETRKIVGAMMQHITYTQW 303
+ W + ++ M+Q + Y
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EMLQKLLYQID 210
Query: 304 LPHILGPDGMVKINIEWKFIYGRMRRYVGSNRLEVVIGTII----YDLRI----NFSC 353
D I + I +RR + S E + ++ + + N SC
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAWNAFNLSC 266
Score = 36.4 bits (83), Expect = 0.016
Identities = 49/326 (15%), Positives = 85/326 (26%), Gaps = 95/326 (29%)
Query: 4 PPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEK 63
P E N + S+ A ++ A W K+ +K
Sbjct: 319 PREVLTTNPRRL-SIIAE--------------SIRDGLAT--------W-DNWKHVNCDK 354
Query: 64 PPARVVSNELI--STESITPDPVITHMVMQWGQFLDHDLDHAIPATSLES-WEGID---- 116
+I S + P M + F IP L W +
Sbjct: 355 ------LTTIIESSLNVLEPA-EYRKMFDRLSVFPP---SAHIPTILLSLIWFDVIKSDV 404
Query: 117 -------CKKSCAFSPPC----------FPMEVPHDDPRVKKRRCID-FIRSSAICGSGM 158
K S P ++V ++ R +D + +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 159 TSMFWDTVQPREQINQLTAYIDGSQVYGFTE----ERSRVLRDIRNDNGFLRQGIL---S 211
+ D ++I + ER + R + D FL Q I +
Sbjct: 465 IPPYLD--------QYFYSHI----GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 212 AANKPYLPIAGATEVD------CRRDPTESNIGCLLAGDIRANEQVGLLAMHTLWLREHN 265
A N + ++ C DP + + + E+ + + +T
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT------- 565
Query: 266 RMAKDLRDINPHWDGETLFHETRKIV 291
DL I + E +F E K V
Sbjct: 566 ----DLLRIALMAEDEAIFEEAHKQV 587
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 43.6 bits (103), Expect = 3e-05
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+L IH+++ D G Y C+AK+ +G S+ +
Sbjct: 153 GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVK 185
Score = 38.2 bits (89), Expect = 0.002
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L I S+E SD+G+Y C A + +G
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGA 94
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 42.9 bits (101), Expect = 5e-05
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L I + D+G YEC+A++ MG S+
Sbjct: 164 FLQIENSREEDQGKYECVAENSMGTEHSKATN 195
Score = 36.3 bits (84), Expect = 0.008
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 4 PPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
G + D+ YEC+A++ +G+ S A
Sbjct: 58 EQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADAT 97
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens}
Length = 218
Score = 42.9 bits (101), Expect = 6e-05
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
P G+ L+ +++ D G Y C + SQ ++
Sbjct: 60 PNGNTSE-LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97
Score = 40.3 bits (94), Expect = 5e-04
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 4 PPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
P M+ ++ +G Y C + S+
Sbjct: 158 PLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 197
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 40.8 bits (96), Expect = 7e-05
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+G ++L+I + + D G+Y C+A + G+
Sbjct: 61 RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFS 95
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 40.4 bits (95), Expect = 7e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
G ++L+ + ASD G Y C+AK+ GE
Sbjct: 57 SEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT 91
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 42.1 bits (99), Expect = 7e-05
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
E L + S+E SD G Y C + SQP
Sbjct: 54 SEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW 92
Score = 36.3 bits (84), Expect = 0.006
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+ +++ + ++ C A + G S+ A
Sbjct: 146 SPSVLNVTGVTQSTMFSCEAHNLKGLASSRTAT 178
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 42.5 bits (100), Expect = 8e-05
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
LMI SD G Y C+ + +GE +S+ A
Sbjct: 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAE 197
Score = 39.4 bits (92), Expect = 8e-04
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 5 PEGSGC-NNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
P GS ++ DEGVY C+A++ +GE S A
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDAS 104
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A
{Homo sapiens}
Length = 291
Score = 42.9 bits (101), Expect = 9e-05
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
EG L I++ D G+Y C A G+ +
Sbjct: 55 KEGVRSR-LTIYNANIEDAGIYRCQATDAKGQTQEATVV 92
Score = 37.1 bits (86), Expect = 0.007
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L + ++ SD G Y C A + GE + Q
Sbjct: 249 ELTVRNIINSDGGPYVCRATNKAGEDEKQ 277
Score = 33.3 bits (76), Expect = 0.12
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 NNLMIHSMEASDEGVYECMAKSP-MGEVKSQPARAI 45
NNL I ++ SDEG+Y C + GE+ + I
Sbjct: 153 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 42.9 bits (101), Expect = 1e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L I ++ D GVY C A++P A
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAE 209
Score = 37.9 bits (88), Expect = 0.004
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+NL I + SDEG Y+C+A++ G +S
Sbjct: 365 SNLRILGVVKSDEGFYQCVAENEAGNAQSS 394
Score = 36.0 bits (83), Expect = 0.016
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
NL+I ++ D G Y C+ + +
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNENISAS 304
Score = 34.4 bits (79), Expect = 0.051
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 11 NNLMIHSMEASDEGVYECMAK-SPMGEVKSQPAR 43
N++ DEG+Y+C A G + S+ A+
Sbjct: 82 QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAK 115
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 40.2 bits (94), Expect = 1e-04
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 5 PEGSGC-NNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
P GS ++ DEGVY C+A++ +GE S A
Sbjct: 65 PSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDAS 104
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 39.6 bits (93), Expect = 1e-04
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
M+ ++ +G Y C + S+
Sbjct: 50 KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 39.3 bits (92), Expect = 1e-04
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 4 PPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAI 45
P S L++ + D+G Y C+A + A +I
Sbjct: 52 PLPPSP--VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 41.3 bits (97), Expect = 2e-04
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L I E SD+G YEC+A + G S PA
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAGTRYSAPAN 199
Score = 34.8 bits (80), Expect = 0.025
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 3 HPPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+GSG + DE +YEC+A + +GE+
Sbjct: 56 EFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVS 93
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 40.9 bits (96), Expect = 2e-04
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L I++ D G+Y C A G+ +
Sbjct: 59 RLTIYNANIEDAGIYRCQATDAKGQTQEATVV 90
Score = 34.8 bits (80), Expect = 0.024
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
NNL I ++ SDEG+Y C +
Sbjct: 151 NNLQILNINKSDEGIYRCEGRVEARGEID 179
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex,
receptor protein tyrosine phosphatase; HET: NAG; 2.00A
{Mus musculus} PDB: 3jxa_A*
Length = 384
Score = 42.1 bits (99), Expect = 2e-04
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 11 NNLMIHSM-EASDEGVYECMAKSPMGEVKSQPAR 43
+L+I++ + D G Y+C+A + G + S+ A+
Sbjct: 62 GSLLINNPNKTQDAGTYQCIATNSFGTIVSREAK 95
Score = 37.5 bits (87), Expect = 0.006
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I + SD G+Y+C+A++ G + S
Sbjct: 347 GTLNITIVNLSDAGMYQCVAENKHGVIFSS 376
Score = 37.1 bits (86), Expect = 0.007
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I + + D G YEC+A++ G+ ++
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRGKNVAK 287
Score = 36.0 bits (83), Expect = 0.018
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
NL I +E SD G Y C+ + + K
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVL 186
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 41.7 bits (98), Expect = 2e-04
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 9 GCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAI 45
L I S E +D+G YEC+A + G S PA
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLY 198
Score = 36.0 bits (83), Expect = 0.015
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
++ + D Y C+A S +G +++
Sbjct: 256 RNVLELTDVKDSANYTCVAMSSLGVIEAV 284
Score = 35.2 bits (81), Expect = 0.027
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 13 LMIHS-MEASDEGVYECMAKSPMGEVKSQ 40
L I DE VYEC+A++ +GE+
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVH 93
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell
adhesion comple adhesion; HET: NAG; 2.30A {Homo
sapiens}
Length = 201
Score = 40.6 bits (95), Expect = 3e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
NL I ++EASD+G Y C SP
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSK 97
Score = 37.2 bits (86), Expect = 0.003
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I +++ DEG+YEC A++ G+ K Q
Sbjct: 165 AVLKIFNIQLEDEGIYECEAENIRGKDKHQ 194
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 41.4 bits (97), Expect = 3e-04
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 4 PPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
G+ + EG Y+C A++ G S R
Sbjct: 70 RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIR 109
Score = 37.2 bits (86), Expect = 0.007
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ ++ + S VY+C + G + +
Sbjct: 367 DTIIFRDTQISSRAVYQCNTSNEHGYLLAN 396
Score = 37.2 bits (86), Expect = 0.007
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I ++ D G Y C+A + MG ++
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHT 304
Score = 32.5 bits (74), Expect = 0.20
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 12 NLMIHSMEASD-EGVYECMAKSPMGEVKSQPARA 44
+L ++ D + Y C A+ Q
Sbjct: 172 DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 205
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 41.4 bits (97), Expect = 4e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
++ + ++A D G Y+C+A + G V S+ A
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREAS 94
Score = 37.1 bits (86), Expect = 0.007
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
L + D G+Y+C+A++ G V +
Sbjct: 346 GELRFSKLVLEDSGMYQCVAENKHGTVYA 374
Score = 36.8 bits (85), Expect = 0.010
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I +++ DEG YEC A++ G Q
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQ 286
Score = 36.4 bits (84), Expect = 0.013
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
NL I EASD G Y C A S + +
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKS 187
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 41.3 bits (97), Expect = 4e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I + S G Y C A +P+G S
Sbjct: 158 TLQILQTDQSHVGQYNCSASNPLGTASSS 186
Score = 39.8 bits (93), Expect = 0.001
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+L+I+ ++ SD G Y C A++ +G V S
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASS 90
Score = 37.5 bits (87), Expect = 0.007
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L + + D G Y C A + G+
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCS 282
Score = 37.1 bits (86), Expect = 0.007
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L E ++ G Y C K+ G +
Sbjct: 536 LQFSRAEPANAGKYTCQIKNEAGTQEC 562
Score = 36.3 bits (84), Expect = 0.014
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L ++++ D G Y C A + G S
Sbjct: 349 LEMYNLSVEDSGDYTCEAHNAAGSASSS 376
Score = 35.9 bits (83), Expect = 0.019
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ I +++++D G Y+C A + +G
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCV 469
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 39.5 bits (92), Expect = 4e-04
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+ G +L I + D+ Y C A + +GE
Sbjct: 93 DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 38.5 bits (90), Expect = 5e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
G NL I + DEG+Y C A S +G K +
Sbjct: 61 DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 93
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 38.1 bits (89), Expect = 5e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
L I ++ SD G Y C+A S GE
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSW 90
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 38.2 bits (89), Expect = 6e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I + D G Y C+A +P GE
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWS 91
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 39.3 bits (92), Expect = 6e-04
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 9 GCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
G L I ++ ++ G Y A + G+ S
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATS 91
Score = 37.0 bits (86), Expect = 0.005
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ +L+I D G Y A + +G S
Sbjct: 154 QEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATST 188
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 40.7 bits (95), Expect = 7e-04
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
L + S+ +D G YEC ++ + S P
Sbjct: 343 TLTLLSVTRNDVGPYECGIQNELSVDHSDPV 373
Score = 40.7 bits (95), Expect = 7e-04
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L + ++ +D Y+C ++P+ +S
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVSARRSDSVI 196
Score = 37.6 bits (87), Expect = 0.006
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L + ++ +D Y C ++ + +S P
Sbjct: 522 LTLFNVTRNDARAYVCGIQNSVSANRSDPVT 552
Score = 35.7 bits (82), Expect = 0.021
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I + ++ G Y C + +
Sbjct: 606 LFIAKITPNNNGTYACFVSNLATGRNN 632
Score = 35.3 bits (81), Expect = 0.030
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEV 37
L I ++ ++ G Y C A + +
Sbjct: 249 ELFIPNITVNNSGSYTCQAHNSDTGL 274
Score = 32.6 bits (74), Expect = 0.20
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I ++ + G+Y C A +
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSR 454
Score = 32.2 bits (73), Expect = 0.27
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKS 39
+L+I ++ +D G Y +
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVNEE 99
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 38.1 bits (88), Expect = 7e-04
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
L + ++E + EG Y+C+ + G S A
Sbjct: 78 LRLRNVEFTSEGXYQCVISNHFGSSYSVXA 107
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 37.7 bits (88), Expect = 7e-04
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ G L IH + SD G+Y C K+ G V S
Sbjct: 57 EDKGGFF-LEIHKTDTSDSGLYTCTVKNSAGSVSSS 91
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 39.3 bits (92), Expect = 7e-04
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
G + L+I S+ D VY+ A + G V
Sbjct: 57 FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT 91
Score = 38.9 bits (91), Expect = 0.001
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
S + + + +E D G Y AK+ G +
Sbjct: 155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK 189
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 39.3 bits (92), Expect = 7e-04
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L + + E DEGVY C+A + +GEV++
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETS 92
Score = 31.2 bits (71), Expect = 0.37
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+ +M + + G Y+ + G V +
Sbjct: 154 NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDA 188
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 37.6 bits (88), Expect = 8e-04
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 9 GCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
G L I + E D G Y C A + G +
Sbjct: 60 GLCRLRILAAERGDAGFYTCKAVNEYGARQC 90
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin
fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP:
b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 39.0 bits (91), Expect = 8e-04
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 1 MAHPPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+ + S L I++ D G+Y+C+ + G
Sbjct: 54 VVWNDDDSS--TLTIYNANIDDAGIYKCVVTAEDGTQSEATVN 94
Score = 35.6 bits (82), Expect = 0.013
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMG 35
N L I ++ +DEG Y C +
Sbjct: 155 NYLQIRGIKKTDEGTYRCEGRILAR 179
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 37.4 bits (87), Expect = 0.001
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+G+ L++ + +D GVY C A++ GE +
Sbjct: 64 ADGAEHG-LLLTAALPTDAGVYVCRARNAAGEAYAA 98
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 39.7 bits (92), Expect = 0.001
Identities = 5/43 (11%), Positives = 14/43 (32%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWT 53
L + D G Y C+ ++ ++ + + +
Sbjct: 62 EKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLC 104
Score = 35.1 bits (80), Expect = 0.029
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAI 45
+ L++ ++ G Y C A + R I
Sbjct: 162 DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 196
Score = 27.0 bits (59), Expect = 9.5
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 2 AHPPEGSGCNNLMIHSMEASD-EGVYECMAKSPMGEV 37
A+ + L I +E+ + + C AK+ G
Sbjct: 268 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID 304
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 37.4 bits (87), Expect = 0.001
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+ +G L+I + D G Y A + G
Sbjct: 67 QDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTC 101
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 36.9 bits (86), Expect = 0.001
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+G L I D G Y C+A++ +G+V
Sbjct: 61 AGVAELHIQDALPEDHGTYTCLAENALGQVSC 92
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 37.3 bits (87), Expect = 0.001
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+ G +L + D+G Y MA +P G +
Sbjct: 61 DLDGTCSLHTTASTLDDDGNYTIMAANPQGRISC 94
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 38.6 bits (90), Expect = 0.001
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L + ++ SD G Y C A + GE + Q
Sbjct: 58 TELTVRNIINSDGGPYVCRATNKAGEDEKQ 87
Score = 35.6 bits (82), Expect = 0.012
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
G ++L I ++ SD G Y+C A S +G +
Sbjct: 152 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK 185
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 39.7 bits (92), Expect = 0.001
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+G C L I + +D G Y+C +
Sbjct: 80 SDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIY 115
Score = 37.0 bits (85), Expect = 0.008
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+ L I + D G Y + +P+ + K
Sbjct: 381 HVLTIMEVSERDTGNYTVILTNPISKEKQ 409
Score = 36.7 bits (84), Expect = 0.012
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I + SD+G+Y C A S + K+
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNS 319
Score = 36.3 bits (83), Expect = 0.016
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
G NL I + DEG+Y C A S +G K
Sbjct: 717 DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV 748
Score = 35.9 bits (82), Expect = 0.023
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
EG + A+ +Y+C A + +G +
Sbjct: 507 IEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER 541
Score = 35.1 bits (80), Expect = 0.038
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
I S S G+ C AK +S
Sbjct: 183 KGFTIPSYMISYAGMVFCEAKINDESYQSIMY 214
Score = 34.7 bits (79), Expect = 0.056
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 3 HPPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+ + + + D+G Y C+A+ + +
Sbjct: 617 FSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRH 653
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 36.9 bits (86), Expect = 0.001
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L+I + D A + GE S
Sbjct: 57 PEDNVCELVIRDVTGEDSASIMVKAINIAGETSSH 91
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 39.2 bits (91), Expect = 0.001
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 3 HPPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
H + C L+I D G+YE + K G+ KS+
Sbjct: 269 HDFKDGICT-LLITEFSKKDAGIYEVILKDDRGKDKSR 305
Score = 36.1 bits (83), Expect = 0.013
Identities = 9/90 (10%), Positives = 23/90 (25%), Gaps = 9/90 (10%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ---PARAIFDKSKGWTKGLKYYGY 61
+G+ + + D G+Y C G S +
Sbjct: 53 SKGNKTK-MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPV 111
Query: 62 EKPPARVVSNE-----LISTESITPDPVIT 86
+ A + + + E ++ + +
Sbjct: 112 KSELAVEILEKGQVRFWMQAEKLSGNAKVN 141
Score = 36.1 bits (83), Expect = 0.013
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+G + + ++ DEG Y + S
Sbjct: 161 RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST 195
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 38.3 bits (89), Expect = 0.002
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
E I+ + +D G Y + K+ G S
Sbjct: 169 EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSD 203
Score = 35.2 bits (81), Expect = 0.021
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I+ +D+G Y +
Sbjct: 61 LQINEPTPNDKGKYVMELFDGKTGHQK 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 36/272 (13%), Positives = 75/272 (27%), Gaps = 115/272 (42%)
Query: 34 MG-EV--KSQPARAIFDKSKGWTKGLKYYGY-------EKPPARVVSNELISTESITPDP 83
MG ++ S+ A+ +++++ K YG+ P + + I +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFK--DTYGFSILDIVINNPVNLTIHFGGEKGKRIREN- 1687
Query: 84 VITHMVMQWGQFLD----------------------HD---LDH------AIPATS---- 108
+ M + +D + L A+
Sbjct: 1688 ---YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 109 --LESWEGIDCKKSCAFSPPCFPMEVPHDDPRVKKRRCIDFIRS----SAI-CGSGMTSM 161
L+S I + A H S +A+ + + S
Sbjct: 1745 EDLKSKGLIPADATFA----------GH---------------SLGEYAALASLADVMS- 1778
Query: 162 FWDTVQ-------------PREQINQ----LTAYIDGSQVYGFTEERSR-VLRDIRNDNG 203
V+ PR+++ + + A G F++E + V+ + G
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 204 FLRQGILSAANKPY-LP-----IAGATE-VDC 228
+L + N Y + AG +D
Sbjct: 1839 WL----VEIVN--YNVENQQYVAAGDLRALDT 1864
Score = 37.0 bits (85), Expect = 0.011
Identities = 46/260 (17%), Positives = 76/260 (29%), Gaps = 111/260 (42%)
Query: 11 NNLMIHSMEAS----DEGV-----------YE--CMAKSPMGE---------VKSQPAR- 43
N+ IH++ A ++ MAK P + V A+
Sbjct: 99 ND--IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 44 -AIFDKSKGWTKG----LKYYG-----YEKPPARVVSNELISTESITPDPVITHMVMQWG 93
AIF G G Y+ Y+ V +LI + T +I +
Sbjct: 157 VAIF----G---GQGNTDDYFEELRDLYQTYHVLV--GDLIKFSAETLSELIRT-TLDAE 206
Query: 94 QFLDHDLDHAIPATSLESWEGIDCKKSCAFSPPCFPMEVPHDDPRVKKRRCIDFIRSSAI 153
+ L+ + W +E P + P D++ S I
Sbjct: 207 KVFTQGLN-------ILEW-----------------LENPSNTPDK------DYLLSIPI 236
Query: 154 CGSGMTSMFWDTVQPREQINQLTAYIDGSQVYGFTEERSRVLRDIRNDNGFLR------Q 207
S P + QL Y+ +++ GFT LR L+ Q
Sbjct: 237 ------SC------PLIGVIQLAHYVVTAKLLGFTPGE---LRSY------LKGATGHSQ 275
Query: 208 GILSAANKPYLPIAGATEVD 227
G+++A IA +
Sbjct: 276 GLVTAV-----AIAETDSWE 290
Score = 28.5 bits (63), Expect = 4.6
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 18/91 (19%)
Query: 16 HS--MEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVVSNEL 73
HS + + + + + + K+ + ++D G L RV+S +
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG--SDL----------RVLSGSI 475
Query: 74 ISTESITPDPVITHMVMQWGQFLDHDLDHAI 104
+E I I + ++W H +
Sbjct: 476 --SERIVD--CIIRLPVKWETTTQFKATHIL 502
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 39.1 bits (91), Expect = 0.002
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGE 36
+L ++ D GVY C A
Sbjct: 302 DLFFKKVQVEDGGVYTCYAMGETFN 326
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 39.1 bits (91), Expect = 0.002
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
G + L I S+ A+D G+Y+C+AKS +G +
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHS 519
Score = 37.6 bits (87), Expect = 0.007
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L + +++ ++EG Y C A + +G S
Sbjct: 775 LHVDNIQKTNEGYYLCEAINGIGSGLS 801
Score = 36.8 bits (85), Expect = 0.011
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+ L I S++ D+G+Y+C ++ ++
Sbjct: 389 SVLRIESVKKEDKGMYQCFVRNDRESAEA 417
Score = 35.7 bits (82), Expect = 0.025
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 12 NLMIHSMEASD------EGVYECMAKSPMGEVKSQPAR 43
L+ A D VY C+A++ G + S+
Sbjct: 95 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVH 132
Score = 35.7 bits (82), Expect = 0.026
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L+I D G Y C+ + +G +
Sbjct: 308 LIIKDAVVEDSGKYLCVVNNSVGGESVE 335
Score = 34.1 bits (78), Expect = 0.076
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 11 NNLMIHSME-ASDEGVYECMAKSPMGEVKSQPAR 43
L+I ++E SD+ Y C+AK+ G
Sbjct: 579 GTLIIENVERNSDQATYTCVAKNQEGYSARGSLE 612
Score = 33.0 bits (75), Expect = 0.16
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I ++EAS G + C A++ G +
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFT 706
Score = 31.8 bits (72), Expect = 0.42
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 11 NNLMIHSMEASD-EGVYECMAKSPMGE 36
L I + D Y+C K +
Sbjct: 199 GELHIREVGPEDGYKSYQCRTKHRLTG 225
Score = 29.9 bits (67), Expect = 1.5
Identities = 2/25 (8%), Positives = 8/25 (32%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEV 37
+ + + ++ +A G
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQ 25
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 38.4 bits (89), Expect = 0.002
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
G L+I D G+YE + K G+ KS+
Sbjct: 58 DGICTLLITEFSKKDAGIYEVILKDDRGKDKSR 90
Score = 36.4 bits (84), Expect = 0.010
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
E I+ + +D G Y + K+ G S
Sbjct: 274 EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSD 308
Score = 35.3 bits (81), Expect = 0.024
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I+ +D+G Y +
Sbjct: 166 LQINEPTPNDKGKYVMELFDGKTGHQK 192
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 36.1 bits (84), Expect = 0.002
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L+I ++ D G+Y + G +
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSAT 92
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 37.6 bits (87), Expect = 0.003
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
G L+I D G+YE + K G+ KS+
Sbjct: 168 DGICTLLITEFSKKDAGIYEVILKDDRGKDKSR 200
Score = 36.5 bits (84), Expect = 0.007
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+G + + ++ DEG Y + S
Sbjct: 56 RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHS 89
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 37.5 bits (87), Expect = 0.003
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L + ++ SD G Y C A + GE + Q
Sbjct: 153 ELTVRNIINSDGGPYVCRATNKAGEDEKQ 181
Score = 35.9 bits (83), Expect = 0.010
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPM-GEVKSQPARAI 45
NNL I ++ SDEG+Y C + GE+ + I
Sbjct: 57 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 92
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 38.0 bits (88), Expect = 0.003
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+L++ S+ SD G Y C+ ++ G ++
Sbjct: 73 SLVMESVVPSDRGNYTCVVENKFGSIRQT 101
Score = 34.5 bits (79), Expect = 0.038
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 7 GSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
L + ++ D G Y C A + +G +
Sbjct: 178 VEADVRLRLANVSERDGGEYLCRATNFIGVAEK 210
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 37.6 bits (87), Expect = 0.003
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ S+ D G Y CM G +
Sbjct: 68 TGITFKSVTREDTGTYTCMVSEEGGNSYGE 97
Score = 36.5 bits (84), Expect = 0.006
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKS 39
L+ + ASD G Y C A++ G +
Sbjct: 172 ELVFDPLSASDTGEYSCEARNGYGTPMT 199
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 37.3 bits (86), Expect = 0.003
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L I ++ D G Y+C +P+ +S +
Sbjct: 165 LRIDPIKREDAGEYQCEISNPVSVRRSNSIK 195
Score = 33.9 bits (77), Expect = 0.055
Identities = 10/89 (11%), Positives = 22/89 (24%), Gaps = 6/89 (6%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVVS 70
+L+ + D GVY R + + + V
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV------HQPVTQPFLQVTNTTVKE 124
Query: 71 NELISTESITPDPVITHMVMQWGQFLDHD 99
+ ++ ++ D + Q L
Sbjct: 125 LDSVTLTCLSNDIGANIQWLFNSQSLQLT 153
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 37.5 bits (87), Expect = 0.003
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVK 38
+ L + +D G Y C A + +G+
Sbjct: 71 NTPSASYLEVTPDSENDFGNYNCTAVNRIGQES 103
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 37.3 bits (86), Expect = 0.004
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ + S+ D G Y CM G+ +
Sbjct: 65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGE 94
Score = 34.9 bits (80), Expect = 0.021
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKS 39
+L+ + A D G Y C A++ G
Sbjct: 170 DLIFDPVTAFDSGEYYCQAQNGYGTAMR 197
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 35.8 bits (83), Expect = 0.004
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
I S++ASDEG Y + ++ G+ ++
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEA 98
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 36.8 bits (85), Expect = 0.005
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
N+ I + D G Y C K + +S+P
Sbjct: 135 NISITNATVEDSGTYYCTGKVWQLDYESEPLN 166
Score = 26.8 bits (59), Expect = 9.8
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 11 NNLMIHSMEASDEGVYECMAK 31
++L I + + D G Y+C +
Sbjct: 51 SSLNIVNAKFEDSGEYKCQHQ 71
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules,
NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4
b.1.1.4 PDB: 1ie5_A
Length = 291
Score = 37.5 bits (87), Expect = 0.005
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L I++ D G+Y+C+ + G
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVN 94
Score = 36.4 bits (84), Expect = 0.012
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I +++ +DE Y C+A++ GE +
Sbjct: 255 ELTIRNVDKNDEAEYVCIAENKAGEQDAS 283
Score = 33.3 bits (76), Expect = 0.11
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
N L I ++ +DEG Y C + +
Sbjct: 155 NYLQIRGIKKTDEGTYRCEGRILARGEIN 183
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 37.4 bits (87), Expect = 0.005
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L + + D G Y C A + G+
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCS 90
Score = 36.3 bits (84), Expect = 0.012
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L ++++ D G Y C A + G S
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Score = 35.5 bits (82), Expect = 0.018
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+ ++ I +++++D G Y+C A + +G
Sbjct: 243 SENFLTSIHILNVDSADIGEYQCKASNDVGSYTC 276
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 37.4 bits (86), Expect = 0.005
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
L + D G Y C ++ K
Sbjct: 81 GALWLLPALQEDSGTYVCTTRNASYCDKM 109
Score = 34.3 bits (78), Expect = 0.057
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAI 45
+L++H + D G Y C+ + R+I
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI 214
Score = 30.8 bits (69), Expect = 0.62
Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 6 EGSGCNNLMIHSMEASDEGV-YECMAKSPMGEV 37
E L+ + D + ++C+ + +
Sbjct: 293 ENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ 325
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 35.0 bits (81), Expect = 0.005
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ S + +D G Y+ K+ +GE ++
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAI 87
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 36.5 bits (84), Expect = 0.006
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
G L+I +++ D Y C + EV+
Sbjct: 65 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFG 100
Score = 31.5 bits (71), Expect = 0.27
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
L + +E D G + C +V+
Sbjct: 143 KTLSVSQLELQDSGTWTCTVLQNQKKVEF 171
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 35.2 bits (81), Expect = 0.006
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 10 CNNLMIHSMEASDEGVYECMAKSPMGEV 37
+ + +D G+Y C+ SP G
Sbjct: 59 GEEVEVRDSIPADSGLYACVTSSPSGSD 86
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 37.5 bits (87), Expect = 0.006
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
L I +D G Y C A + +G
Sbjct: 153 STGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQ 186
Score = 35.2 bits (81), Expect = 0.031
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKS 39
+L I ++ SD G Y+C A S +G +
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQK 91
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 37.4 bits (86), Expect = 0.007
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ G +++I M + G Y +S
Sbjct: 98 QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL 132
Score = 33.1 bits (75), Expect = 0.14
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
++ G Y A++ +
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTK 406
Score = 33.1 bits (75), Expect = 0.16
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
G ++ ++ EA + +C A + +G
Sbjct: 468 VFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCET 503
Score = 32.0 bits (72), Expect = 0.33
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGE 36
+ S+ +D G Y C + +
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQ 315
Score = 29.3 bits (65), Expect = 2.2
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 21 SDEGVYECMAKSPMGEVKSQPAR 43
C A++ +G ++
Sbjct: 201 LFGTDIRCCARNELGRECTRLFT 223
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 36.8 bits (84), Expect = 0.008
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
SG NL+I + + +D G C + GE+ +
Sbjct: 210 SGARNLVIRAAKITDAGRVWCELATGQGELDA 241
Score = 29.9 bits (66), Expect = 1.3
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAK 31
L + + D G Y C
Sbjct: 85 ANLAAPTLRLTHVHPQDGGRYWCQVA 110
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 36.8 bits (85), Expect = 0.008
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 12 NLMIHSMEASD------EGVYECMAKSPMGEVKSQPAR 43
L+ A D VY C+A++ G + S+
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVH 97
Score = 36.8 bits (85), Expect = 0.009
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L+I D G Y C+ + +G +
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVE 299
Score = 36.8 bits (85), Expect = 0.009
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+ L I S++ D+G+Y+C ++ ++
Sbjct: 353 SVLRIESVKKEDKGMYQCFVRNDRESAEA 381
Score = 29.9 bits (67), Expect = 1.2
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 6/82 (7%)
Query: 11 NNLMIHSMEASD-EGVYECMAKSPMG--EVKSQPARAIFDKSKGWTKGLKYYGYEKPPAR 67
L I + D Y+C K + S + + + + P
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE 223
Query: 68 VVSNELISTESI---TPDPVIT 86
++ IS P P
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFR 245
>3mjg_X Beta-type platelet-derived growth factor receptor;
protein-protein complex, growth factor-receptor
complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo
sapiens}
Length = 289
Score = 36.6 bits (84), Expect = 0.008
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+G+ + L + ++ D G Y C G + R
Sbjct: 46 DGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKR 83
Score = 35.4 bits (81), Expect = 0.022
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I S E D G Y C + + +
Sbjct: 244 LHIPSAELEDSGTYTCNVTESVNDHQD 270
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 36.8 bits (84), Expect = 0.008
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGY----EKPPA 66
+ L +D G Y CM ++ K + K + +K + E
Sbjct: 79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQ 138
Query: 67 RVVSNELISTESITPDPVIT 86
R+ + + P IT
Sbjct: 139 RITCPNVDGYFPSSVKPTIT 158
Score = 33.3 bits (75), Expect = 0.11
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPARAI 45
NL S+ G Y C+ P R +
Sbjct: 177 MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211
Score = 29.1 bits (64), Expect = 2.7
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 5 PEGSGCNNLMIHSMEASDEGV-YECMAKSPMGEV 37
+ + L I + + D Y C A+S GEV
Sbjct: 290 EDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV 323
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 34.7 bits (80), Expect = 0.008
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 9 GCNNLMIHSMEASDEGVYECMAKSPMGEV 37
+ + +D G+Y C+ SP G
Sbjct: 52 TGEEVEVQDSVPADSGLYACVTSSPSGSD 80
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 36.4 bits (84), Expect = 0.008
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+L++ S+ SD+G Y C+ ++ G +
Sbjct: 77 SLIMESVVPSDKGNYTCVVENEYGSINHT 105
Score = 34.5 bits (79), Expect = 0.037
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 7 GSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
S L + ++ +D G Y C + +G+
Sbjct: 181 SSNAEVLALFNVTEADAGEYICKVSNYIGQANQ 213
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 36.4 bits (84), Expect = 0.009
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ I + D G+Y C A + G V +
Sbjct: 223 SEYQILTARREDSGLYWCEAATEDGNVLKR 252
Score = 30.3 bits (68), Expect = 0.81
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEV 37
+NL I S G Y C
Sbjct: 131 SNLTILKTNISHNGTYHCSGMGKHRYT 157
Score = 28.3 bits (63), Expect = 3.3
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 11 NNLMIHSMEASDEGVYECMAK 31
+ I S +D G Y C
Sbjct: 48 PSYRITSASVNDSGEYRCQRG 68
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 35.0 bits (80), Expect = 0.010
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 9 GCNNLMIHSMEASDEGVYECMAKSPMGEV 37
+ + I ++ D G YEC A +
Sbjct: 88 AASTISIDTLVEEDTGTYECRASNDPDRN 116
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 36.2 bits (83), Expect = 0.010
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 1 MAHPPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
SG ++ + +++ SD G Y+C K G +
Sbjct: 74 FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK 113
Score = 30.8 bits (69), Expect = 0.46
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVK 38
+ + + + G Y C ++ +G +
Sbjct: 178 ISVKNASSEYSGTYSCTVQNRVGSDQ 203
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 34.6 bits (80), Expect = 0.010
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I + G Y + ++ +G ++Q
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGSRQAQ 92
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 36.6 bits (84), Expect = 0.012
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+++I M + G Y +S
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTIL 132
Score = 35.8 bits (82), Expect = 0.019
Identities = 3/30 (10%), Positives = 8/30 (26%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
++ G Y A++ +
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTKM 407
Score = 31.2 bits (70), Expect = 0.60
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEV 37
+ S+ +D G Y C + +
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPSQS 316
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 33.8 bits (78), Expect = 0.012
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L + + D+G Y C + GE S
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSS 86
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 34.2 bits (79), Expect = 0.012
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
SG L I D G Y + + GE
Sbjct: 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEASD 92
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 35.9 bits (82), Expect = 0.013
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I + SD+G+Y C A S + K+
Sbjct: 173 LTIDGVTRSDQGLYTCAASSGLMTKKN 199
Score = 28.6 bits (63), Expect = 2.9
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQP 41
I S S G+ C AK +S
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIM 94
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 34.0 bits (78), Expect = 0.015
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L++ S+ SD+G Y C+ ++ G +
Sbjct: 67 LIMESVVPSDKGNYTCVVENEYGSINH 93
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 35.9 bits (83), Expect = 0.015
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEV 37
+ + +E D G Y AK+ G
Sbjct: 163 VFPNGVERKDAGFYVVCAKNRFGID 187
Score = 34.3 bits (79), Expect = 0.055
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
G + L+I S+ D VY+ A + G V
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGT 91
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 34.4 bits (79), Expect = 0.016
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L+ + + G Y +AK+P+G
Sbjct: 67 LLFNKPTHYNNGNYTLIAKNPLGTANQ 93
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 35.7 bits (82), Expect = 0.017
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
IH + Y+C A +V S R
Sbjct: 145 GFTIHRAKFIQSQDYQCSALMGGRKVMSISIR 176
Score = 35.3 bits (81), Expect = 0.022
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 3 HPPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
H L + ++ G Y C+A + G+ +
Sbjct: 237 HNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHST 273
Score = 32.6 bits (74), Expect = 0.18
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L ++ + G Y C +
Sbjct: 53 LSTNNATFQNTGTYRCTEPGDPLGGSAA 80
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 34.3 bits (78), Expect = 0.017
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
+ E DEGVY K+P+GE +
Sbjct: 105 FTVEGAEKEDEGVYTVTVKNPVGEDQV 131
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 35.7 bits (82), Expect = 0.018
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L +++++ D G+Y C+A + +G +
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVGTRTAT 274
Score = 34.5 bits (79), Expect = 0.043
Identities = 6/32 (18%), Positives = 8/32 (25%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+I + D Y C E S
Sbjct: 145 GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIW 176
Score = 34.2 bits (78), Expect = 0.055
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
S + L + + G Y C +
Sbjct: 46 PESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT 80
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar
biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A
{Thermus thermophilus} PDB: 3oa0_A*
Length = 312
Score = 35.7 bits (82), Expect = 0.020
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 155 GSGMTSMFWDTVQPREQINQLTAYIDGSQV---YGFTEERSRVLRDIRNDNGFLRQGILS 211
S S + ++ + + + +DG +V GFT+ + V R GF
Sbjct: 227 LSIDPSFVPEPLRRQGKRTYRSIAVDGEEVEFSEGFTDLHTEVYRKTLAGEGFGLDEAAE 286
Query: 212 AANKPY----LPIAGATEVDC 228
A LP++ + +
Sbjct: 287 AIRVAALLRTLPLSQPSPENR 307
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 34.4 bits (79), Expect = 0.023
Identities = 7/32 (21%), Positives = 8/32 (25%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
I S G Y C S+P
Sbjct: 135 TFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT 166
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 33.8 bits (77), Expect = 0.028
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEV 37
L ++ + G Y +A +P G+
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQA 89
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 33.6 bits (76), Expect = 0.030
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 2 AHPPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ + L I + SD+G+Y C A S + K+
Sbjct: 65 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 103
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 35.1 bits (81), Expect = 0.030
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L ++ D G+Y CM + +G +
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTAS 426
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 35.0 bits (80), Expect = 0.033
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKG 51
L + + D G Y C + + R S G
Sbjct: 62 RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSG 101
Score = 34.6 bits (79), Expect = 0.037
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L +H++ D G Y C+A + +G
Sbjct: 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHS 320
Score = 34.2 bits (78), Expect = 0.053
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+L++ S+ SD G Y C+ ++ G ++
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQT 209
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 34.1 bits (78), Expect = 0.034
Identities = 7/32 (21%), Positives = 9/32 (28%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+ I D G Y C V S+
Sbjct: 138 DFHIPKATLKDSGSYFCRGLVGSKNVSSETVN 169
Score = 28.3 bits (63), Expect = 3.2
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
++ I + +D G Y C S P +
Sbjct: 54 SSYFIDAATVNDSGEYRCQTN---LSTLSDPVQ 83
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 34.7 bits (79), Expect = 0.035
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I S D GV+ C A + G
Sbjct: 254 LTISSARVDDSGVFMCYANNTFGSANV 280
Score = 29.3 bits (65), Expect = 1.8
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 10 CNNLMIHSMEASDEGVYECMAKSPMGEV 37
N + EA+ G Y C + +
Sbjct: 56 KNEWIQEKAEATRTGTYTCSNSNGLTSS 83
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 34.5 bits (78), Expect = 0.038
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEV 37
L++ ++ +DEG+Y C + +
Sbjct: 86 LLLQDVQKADEGIYTCEIRLKNESM 110
Score = 34.1 bits (77), Expect = 0.060
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
+ + +++ SD+G+Y C E +
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRK 229
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 34.8 bits (79), Expect = 0.038
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQP 41
G L+I +++ D Y C + EV+
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV 97
Score = 30.9 bits (69), Expect = 0.61
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
L + +E D G + C +V+
Sbjct: 142 KTLSVSQLELQDSGTWTCTVLQNQKKVEF 170
Score = 30.1 bits (67), Expect = 1.2
Identities = 3/37 (8%), Positives = 11/37 (29%)
Query: 4 PPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ L + + G ++ G++ +
Sbjct: 250 GKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQE 286
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 35.0 bits (80), Expect = 0.040
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 3 HPPEGSGCNNLMIHSMEASDEGVYECMAKSPMGE 36
+ N + EA++ G Y C K +
Sbjct: 72 DETNENKQNEWITEKAEATNTGKYTCTNKHGLSN 105
Score = 34.6 bits (79), Expect = 0.044
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I S +D GV+ C A + G
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVT 302
Score = 34.3 bits (78), Expect = 0.059
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 4 PPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
PP G I S G EC A + +G+ +
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAY 503
Score = 32.3 bits (73), Expect = 0.24
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEV 37
+ L + ++ ++ G Y + +
Sbjct: 372 RYVSELHLTRLKGTEGGTYTFLVSNSDVNA 401
Score = 28.1 bits (62), Expect = 5.8
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 11 NNLMIHSMEAS-DEGVYECMAKSPMGEVKSQPAR 43
+MI S++ + C V S+
Sbjct: 168 AGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFI 201
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 32.4 bits (74), Expect = 0.049
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEV 37
L + + + G Y +AK+ G+
Sbjct: 64 LQLDNPTHMNNGDYTLIAKNEYGKD 88
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 32.7 bits (75), Expect = 0.049
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ SD G YE + + +
Sbjct: 81 FFVRQAARSDSGEYELSVQIENMKDTAT 108
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 34.3 bits (79), Expect = 0.052
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEV 37
+G+ L + SD GVY CM + G
Sbjct: 405 NDGT----LNFSHVLLSDTGVYTCMVTNVAGNS 433
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 33.7 bits (77), Expect = 0.053
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I ++ D+ +Y+ G+ +
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLE 95
Score = 30.6 bits (69), Expect = 0.53
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGE 36
++ H S ++C A + + +
Sbjct: 145 QRVITHKWTTSLSAKFKCTAGNKVSK 170
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 32.7 bits (74), Expect = 0.056
Identities = 4/28 (14%), Positives = 7/28 (25%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ I + + G Y C
Sbjct: 77 MQIIKAKDNFAGNYRCEVTYKDKFDSCS 104
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 32.1 bits (73), Expect = 0.060
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I +++ SD G Y C + +
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGT 91
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 33.9 bits (77), Expect = 0.061
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+L + + DEG Y C+ + +S
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIW 111
Score = 32.0 bits (72), Expect = 0.29
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L+I ++ C + +G +++
Sbjct: 268 AQLLIRPVDKPINTTLICNVTNALGARQAE 297
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 32.5 bits (74), Expect = 0.061
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 13 LMIHSMEASDEGVYEC--MAKSPMGEVKSQ 40
L +H+++ D+G+Y+C K P G ++
Sbjct: 71 LRLHNLQIKDKGLYQCIIHHKKPTGMIRIH 100
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 33.3 bits (75), Expect = 0.084
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 6 EGSGCNNLMIHSM-EASDEGVYECMAKSPMGEVKS 39
GS ++L + E G Y C + E +
Sbjct: 161 IGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 195
Score = 27.6 bits (60), Expect = 6.7
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+ S G+Y+C + R
Sbjct: 51 WNLGSNAKDPRGMYQCKGSQNKSKPLQVYYR 81
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 33.6 bits (76), Expect = 0.089
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEV 37
L ++ + G Y +A +P G+
Sbjct: 310 CLRLNQPTHVNNGNYTLLAANPFGQA 335
Score = 28.9 bits (64), Expect = 2.7
Identities = 3/28 (10%), Positives = 10/28 (35%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ + + C A++ +G +
Sbjct: 215 TLANVTSDLNRKNVTCWAENDVGRAEVS 242
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 31.5 bits (72), Expect = 0.100
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGE----VKSQPA 42
EG+ L+I D G Y C ++ V+ + +
Sbjct: 59 EGTMAM-LVIRGASLKDAGEYTCEVEASKSTASLHVEEKAS 98
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 31.5 bits (71), Expect = 0.12
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEV 37
L I + + G Y C +
Sbjct: 73 ELHITDAQPAFTGSYRCEVSTKDKFD 98
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 33.3 bits (75), Expect = 0.12
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
NL+IH+ E D G Y+C +K+
Sbjct: 182 QNLIIHNPELEDSGRYDCYVHYDDVRIKND 211
Score = 28.6 bits (63), Expect = 3.6
Identities = 4/26 (15%), Positives = 8/26 (30%), Gaps = 1/26 (3%)
Query: 13 LMIHSMEASDEG-VYECMAKSPMGEV 37
L ++ G Y C + +
Sbjct: 295 LYFENVTEEYIGNTYTCRGHNYYFDK 320
Score = 28.3 bits (62), Expect = 3.8
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 11 NNLMIHSMEASDEG-VYECMAKSPMGEVKSQPAR 43
+L I + ++D Y C + G+ R
Sbjct: 89 GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVR 122
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 32.5 bits (74), Expect = 0.12
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+ I D G Y C V S+ +
Sbjct: 138 DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQ 169
Score = 26.8 bits (59), Expect = 9.1
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
++ I + D G Y C + S P +
Sbjct: 54 SSYFIDAATVDDSGEYRCQTQ---LSTLSDPVQ 83
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 32.7 bits (74), Expect = 0.12
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ L++ + S +G Y C K EV Q
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQ 96
Score = 31.9 bits (72), Expect = 0.22
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
+ S+ C+ K+ E
Sbjct: 166 AVDLSLPKPWHLPVTCVGKNDKEEAHG 192
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 33.0 bits (74), Expect = 0.16
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQ 40
G +++I+ + SD G Y C A K
Sbjct: 179 GTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKN 214
Score = 29.6 bits (65), Expect = 2.1
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 7 GSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
S +L ++ + +DEG Y C K ++
Sbjct: 505 NSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVY 541
Score = 29.2 bits (64), Expect = 2.9
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 7 GSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQP 41
G +++I + D G Y C A S + P
Sbjct: 286 KDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSP 320
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 32.3 bits (73), Expect = 0.17
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVVSNE 72
++I ++ SDEG YEC+ + + + P +S+
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKD----------AFKREHLAEVTLSVKADFPTPSISDF 116
Query: 73 LISTESI 79
I T +I
Sbjct: 117 EIPTSNI 123
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 31.4 bits (71), Expect = 0.19
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 13 LMIHSMEASDEGVYECMAKSPMG 35
+ + +++ SD G Y+C K G
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPG 113
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 32.8 bits (75), Expect = 0.19
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 5 PEGSGCNNLMIHSMEASDEGVYECMAKSPMGE 36
P+G+ L + + D G Y C+A + G
Sbjct: 439 PDGT----LEVRYAQVQDNGTYLCIAANAGGN 466
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 31.9 bits (72), Expect = 0.21
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I ++ D G Y S G
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILN 90
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 30.4 bits (69), Expect = 0.31
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGE----VKSQPAR 43
+G+ C L IH + +D G Y CM V++ PAR
Sbjct: 58 DGTRCE-LQIHDLSVADAGEYSCMCGQERTSATLTVRALPAR 98
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 30.3 bits (68), Expect = 0.37
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 13/55 (23%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPAR 67
++IH+++ SD G + C K+P G T + Y +EK P R
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPD-------------IVGKTSQVTLYVFEKVPTR 124
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 30.1 bits (68), Expect = 0.37
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKS 32
G L++ ++ G Y C A
Sbjct: 62 VGCTRR-LVVQQAGQAEAGEYSCEAGG 87
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 30.8 bits (69), Expect = 0.42
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 7 GSGCNNLMIHS-MEASDEGVYECMAKSPMGEVKS 39
G + L I + +D G Y C S G ++
Sbjct: 142 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA 175
Score = 28.1 bits (62), Expect = 3.3
Identities = 4/36 (11%), Positives = 7/36 (19%), Gaps = 5/36 (13%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMG-----EVKSQP 41
G Y C+ ++ P
Sbjct: 49 QKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPP 84
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 31.0 bits (70), Expect = 0.46
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKS 39
I+ A D G Y C+ +
Sbjct: 56 MEYRINKPRAEDSGEYHCVYHFVSAPKAN 84
Score = 29.8 bits (67), Expect = 0.92
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 6 EGSGCNNLMIHSME-ASDEGVYECMAKSPMGEVKS 39
L I +++ D G YEC A + +G
Sbjct: 148 NKENYTELNIVNLQITEDPGEYECNATNSIGSASV 182
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 29.7 bits (67), Expect = 0.52
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 4/34 (11%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGE----VKSQPA 42
L++ SD G + + V+ +
Sbjct: 67 LVVREAAPSDAGEVVFSVRGLTSKASLIVRERSG 100
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 29.7 bits (67), Expect = 0.55
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS------QPARAIFDKSK 50
+ G + L + + D G A G+ ++ ++F +S
Sbjct: 65 QPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSG 111
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 29.2 bits (66), Expect = 0.58
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I ++E +D Y C G+ +S
Sbjct: 65 LTISALEKADSDTYTCDI----GQAQS 87
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 30.0 bits (67), Expect = 0.63
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 13 LMIHSMEASDEGVYEC 28
L +H + DEG Y C
Sbjct: 95 LALHGLTVEDEGNYTC 110
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 29.3 bits (66), Expect = 0.65
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGE 36
G L+I + DEG Y +
Sbjct: 59 VGRFHK-LVIDDVRPEDEGDYTFVPDGYALS 88
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 31.0 bits (69), Expect = 0.65
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 8 SGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
++ I A GVY + + +
Sbjct: 142 DTTQDITIQEFTADKNGVYTVKVWGESEDSAASAS 176
Score = 31.0 bits (69), Expect = 0.68
Identities = 3/32 (9%), Positives = 9/32 (28%)
Query: 11 NNLMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
L + + + G Y+ + +
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESE 83
Score = 28.6 bits (63), Expect = 3.1
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMG 35
+L S D + C+AK
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQ 282
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 30.5 bits (68), Expect = 0.73
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
L++ + DE Y C+ ++ AR
Sbjct: 78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATAR 109
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 30.5 bits (68), Expect = 0.75
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPAR 43
+ + +E DEGVY C + +
Sbjct: 93 TIRLSRLELEDEGVYICEFATFPTGNRESQLN 124
Score = 30.5 bits (68), Expect = 0.86
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
+ S G Y C A +P+G Q
Sbjct: 286 FFKGPINYSLAGTYICEATNPIGTRSGQ 313
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 30.4 bits (68), Expect = 0.87
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 13 LMIHSMEASDEGVYECMAKSP 33
L I ++ D GVY CM
Sbjct: 82 LQITDVKLQDAGVYRCMISYG 102
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 30.0 bits (67), Expect = 0.88
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 13 LMIHSMEASDEGVYECMAKSPMG 35
I S++ D G Y C+
Sbjct: 69 FHIPSVQVRDSGQYRCLVICGAA 91
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 30.5 bits (68), Expect = 0.90
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 12 NLMIHSMEASDEGVYECMAKSPMGEVKSQPA 42
+ + + D G Y CM ++ G S A
Sbjct: 224 SFNVVNTTKRDAGKYRCMIRTEGGVGISNYA 254
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 29.0 bits (65), Expect = 0.92
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 13 LMIHSMEASDEGVYECM-AKSPMGEVKSQ 40
L + + DEG Y C+ P G
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVD 109
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 28.8 bits (65), Expect = 1.0
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 13 LMIHSMEASDEGVYECMAKS 32
L+ + D G Y+ +
Sbjct: 69 LIFSDVVQEDRGRYQVITNG 88
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 29.2 bits (65), Expect = 1.1
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 12 NLMIHSMEASDEGVYECMAKS 32
++ + ++ DEGVY+C+ S
Sbjct: 67 SITVPNVTLQDEGVYKCLHYS 87
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 29.0 bits (65), Expect = 1.1
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGE----VKSQPARAIF 46
E + L++ +++ D G Y C V P R I+
Sbjct: 64 EDTVRR-LVLPAVQLEDSGEYLCEIDDESASFTVTVTEPPVRIIY 107
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 28.5 bits (64), Expect = 1.1
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 13 LMIHSMEASDEGVYECMAKS 32
L++ + D G +EC +
Sbjct: 67 LILPEAKVQDSGEFECRTEG 86
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 28.5 bits (64), Expect = 1.2
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 13 LMIHSMEASDEGVYECMA 30
L + + +D+G Y +A
Sbjct: 65 LTVREVGPADQGSYAVIA 82
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 28.7 bits (64), Expect = 1.2
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 13 LMIHSMEASDEGVYECM-AKSPMG 35
L + S+ +D G Y C+ P G
Sbjct: 73 LTLQSLTVNDTGEYFCIYHTYPDG 96
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 28.4 bits (64), Expect = 1.2
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 13 LMIHSMEASDEGVYECMAKS 32
L+I +D Y M
Sbjct: 66 LIIEGATKADAAEYSVMTTG 85
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 28.1 bits (63), Expect = 1.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+G L I++ + +D+ Y A G+ K
Sbjct: 59 KGCQRI-LFINNCQMTDDSEYYVTA----GDEKC 87
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 29.0 bits (64), Expect = 1.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 12 NLMIHSMEASDEGVYECMA 30
++ I ++ +DEG Y C
Sbjct: 104 SISISNVALADEGEYTCSI 122
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 28.7 bits (64), Expect = 1.5
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 13 LMIHSMEASDEGVYECMAKSPMG 35
L I ++ SDEG Y C +
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSY 109
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 29.4 bits (66), Expect = 1.6
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 7 GSGCNN---LMIHSMEASDEGVYECM 29
GSG L I +EA D G+Y C+
Sbjct: 106 GSGSGTDFTLKISRVEAEDLGIYYCV 131
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 28.5 bits (64), Expect = 1.6
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 13 LMIHSMEASDEGVYECMA 30
L I + A D G Y CM
Sbjct: 75 LQIRGLVAEDAGEYLCMC 92
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 28.1 bits (63), Expect = 1.7
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMA 30
EG+ L++ ++ D G Y C
Sbjct: 59 EGAMLE-LVVRNLRPQDSGRYSCSF 82
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 27.6 bits (62), Expect = 1.7
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 13 LMIHSMEASDEGVYECMA 30
L++H+ + G A
Sbjct: 62 LILHNCQLGMTGEVSFQA 79
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 28.2 bits (62), Expect = 1.9
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 11 NNLMIHSM-EASDEGVYECMAKSPMGEVKSQ 40
++L + E G Y C + E +
Sbjct: 59 DHLSLKEFSELEQSGYYVCYPRGSKPEDANF 89
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 28.1 bits (63), Expect = 1.9
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I +D+ Y+C+ G K
Sbjct: 74 LTISQCSLADDAAYQCVV----GGEKC 96
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 29.3 bits (65), Expect = 1.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 15 IHSMEASDEGVYECMAKSPMGEVKSQ 40
++ EG Y C A+S GEV +
Sbjct: 232 SVTVTRDLEGTYLCRARSTQGEVTRE 257
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 29.4 bits (66), Expect = 2.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQ 40
L I+ ++ D+G Y AK+ G +
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTKEEI 567
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 28.9 bits (65), Expect = 2.2
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 7 GSGCNN---LMIHSMEASDEGVYECM 29
GSG L I +EA D GVY C
Sbjct: 102 GSGSGTDFTLRISRVEAEDLGVYYCF 127
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 28.4 bits (63), Expect = 2.3
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 13 LMIHSMEASDEGVYECMAKS 32
L ++ +EG Y C S
Sbjct: 92 LTLNKFSKENEGYYFCSVIS 111
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.3
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 10/31 (32%)
Query: 15 IHSMEASDEGVYECMAKSPMGEVKSQPARAI 45
+ ++AS + +Y + S PA AI
Sbjct: 22 LKKLQASLK-LY-----AD----DSAPALAI 42
Score = 27.6 bits (60), Expect = 4.6
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 24/47 (51%)
Query: 206 RQGI--LSAANKPYLPIAGATEVDCRRD--PTESNIGCLLAGDIRAN 248
+Q + L A+ K Y D P LA I+A
Sbjct: 19 KQALKKLQASLKLYAD-----------DSAPA-------LA--IKAT 45
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB:
3uro_R 3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 28.9 bits (64), Expect = 2.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 12 NLMIHSMEASDEGVYECMAKS 32
+L + + DEG Y C+ +
Sbjct: 79 SLRMFGLRVEDEGSYTCLFVT 99
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 27.3 bits (61), Expect = 2.8
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 13 LMIHSMEASDEGVYECMAK 31
L+I + DEG Y
Sbjct: 63 LVIANALTEDEGDYVFAPD 81
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 28.3 bits (63), Expect = 2.8
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 3 HPPEGSGCNNLMIHSMEASDEGVYECMAKSPMG 35
+P E I SM G Y C +SP+G
Sbjct: 50 NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG 82
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 27.5 bits (61), Expect = 2.8
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 12 NLMIHSMEASDEGVYEC 28
++ + + SDEG Y C
Sbjct: 72 SISVSDVSLSDEGQYTC 88
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 28.5 bits (63), Expect = 3.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 13 LMIHSMEASDEGVYECMAKSP 33
L IH++ ASD G Y C +
Sbjct: 85 LRIHNVTASDSGKYLCYFQDG 105
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 28.4 bits (64), Expect = 3.2
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 12/48 (25%)
Query: 7 GSGCNN---LMIHSMEASDEGVYECMAKSPMG---------EVKSQPA 42
GSG L I SMEA D Y C S E+K P
Sbjct: 205 GSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRAPH 252
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 28.3 bits (63), Expect = 3.2
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 3 HPPEGSGCNNLMIHSMEASDEGVYECMAKSPMG 35
+P E I SM G Y C SP G
Sbjct: 50 NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG 82
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 28.3 bits (64), Expect = 3.6
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 14/51 (27%)
Query: 7 GSGCNN---LMIHSMEASDEGVYECMA--KSPMG---------EVKSQPAR 43
GSG L I +E +D Y C + ++P VK P
Sbjct: 64 GSGSGTDFTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVA 114
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 28.3 bits (63), Expect = 3.7
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 4 PPEGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKSQP 41
P E I S+ G Y C S S+
Sbjct: 51 PQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGR-SES 87
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 27.6 bits (61), Expect = 5.3
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 15/68 (22%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKSQPARAIFDKSKGWTKGLKYYGYEKPPARVVSNE 72
L + +++ D G Y I K+ + V+N
Sbjct: 72 LQLSNLKMEDTGSYRAQ---------------ISTKTSAKLSSYTLRILRQLRNIQVTNH 116
Query: 73 LISTESIT 80
+++T
Sbjct: 117 SQLFQNMT 124
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus
musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A
1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L
1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Length = 113
Score = 26.6 bits (60), Expect = 5.3
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 7 GSGCN-NLMIHSMEASDEGVYECM 29
GSG + L I +EA D GVY C
Sbjct: 71 GSGTDFTLKISRVEAEDLGVYFCS 94
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 27.9 bits (61), Expect = 5.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 21 SDEGVYECMAKSPMGEVKSQ 40
EG Y C A+S GEV +
Sbjct: 423 DLEGTYLCRARSTQGEVTRE 442
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 26.7 bits (58), Expect = 6.0
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVKS 39
L I + D G Y K+
Sbjct: 82 LHIGKVVLGDRGYYRLEVKAKDTCDSC 108
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 27.3 bits (61), Expect = 6.6
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 7 GSGCNN---LMIHSMEASDEGVYECMA 30
GS N L I +A DE Y C +
Sbjct: 63 GSNSGNMATLTISKAQAGDEADYYCQS 89
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 27.2 bits (60), Expect = 7.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 13 LMIHSMEASDEGVYECMAKSPMGEVK 38
L I+++ +SDE YE + + +K
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDTMK 87
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 27.2 bits (61), Expect = 7.1
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 7 GSGCNN---LMIHSMEASDEGVYECM 29
GSG L I +EA D +Y C
Sbjct: 63 GSGSGTDFTLTIDPVEADDTAIYFCQ 88
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 26.7 bits (58), Expect = 7.2
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 6 EGSGCNNLMIHSMEASDEGVYECMAKSPMGEVKS 39
+ L + +D G Y C A ++S
Sbjct: 68 KNISFFILHFEPVLPNDNGSYRCSANFQSNLIES 101
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 27.8 bits (60), Expect = 7.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 9 GCNNLMIHSMEASDEGVYECMA 30
G NL+I ++ D GVY+C++
Sbjct: 584 GRKNLLIFNLSEGDSGVYQCLS 605
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 26.4 bits (58), Expect = 7.5
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 3 HPPEGSGCNNLMIHSMEASDEG-VYECMAKSPMGEV 37
E + L I ++ +D +Y C A + G
Sbjct: 68 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD 103
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme,
antigen, allergen, antimic bacteriolytic enzyme,
glycosidase, hydrolase; 1.20A {Mus musculus} PDB:
3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A
1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L
1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Length = 213
Score = 27.2 bits (61), Expect = 7.8
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 7 GSGCNN---LMIHSMEASDEGVYECM 29
GSG L I+S+E D G+Y C
Sbjct: 64 GSGSGTDFTLSINSVETEDFGMYFCQ 89
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment,
immune system; HET: PG4; 1.60A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L*
1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L*
1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K*
1mfe_L* 1mfb_L* ...
Length = 212
Score = 26.9 bits (60), Expect = 8.3
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 7 GSGCNN---LMIHSMEASDEGVYECMA 30
GS + L I + DE +Y C
Sbjct: 66 GSLIGDKAALTITGAQTEDEAIYFCAL 92
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 27.3 bits (61), Expect = 8.7
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 9/41 (21%)
Query: 13 LMIHSMEASDEGVYECMAKSPMG---------EVKSQPARA 44
L I+S+E D G+Y C + E+K A A
Sbjct: 209 LSINSVETEDFGIYFCQQSNSWPHTFGTGTKLELKRADAAA 249
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system;
2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 26.8 bits (59), Expect = 9.5
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 3 HPPEGSGCNNLMIHSMEASDEGVYECMAKSPMG 35
+I M+A+ G Y+C +
Sbjct: 56 LKFWNETDPEFVIDHMDANKAGRYQCQYRIGHY 88
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 26.8 bits (60), Expect = 9.9
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 7 GSGCNN---LMIHSMEASDEGVYECM 29
SG I +M + D Y C+
Sbjct: 86 SSGYGTDFVFTIENMLSEDVADYYCL 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.433
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,988,673
Number of extensions: 358909
Number of successful extensions: 1014
Number of sequences better than 10.0: 1
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 335
Length of query: 372
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 277
Effective length of database: 4,049,298
Effective search space: 1121655546
Effective search space used: 1121655546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)