Query psy11172
Match_columns 75
No_of_seqs 116 out of 542
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:53:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o7d_A Lysosomal alpha-mannosi 100.0 7.1E-32 2.4E-36 194.6 3.4 74 1-74 77-153 (298)
2 3bvx_A Alpha-mannosidase 2; fa 100.0 5.4E-30 1.8E-34 206.7 4.3 74 1-74 136-210 (1045)
3 3lvt_A Glycosyl hydrolase, fam 99.9 5.5E-27 1.9E-31 186.9 4.6 72 1-74 62-134 (899)
4 2wyh_A Alpha-mannosidase; hydr 99.9 9.5E-27 3.2E-31 185.3 4.4 71 1-74 81-153 (923)
5 1k1x_A 4-alpha-glucanotransfer 99.4 2.1E-13 7.1E-18 106.6 3.3 70 3-74 58-128 (659)
6 3n98_A Alpha-amylase, GH57 fam 98.6 5.2E-08 1.8E-12 75.6 5.3 68 6-74 119-188 (562)
7 3p0b_A TT1467 protein; glycosi 98.6 4.9E-08 1.7E-12 75.4 5.1 68 6-74 140-209 (540)
8 2b5d_X Alpha-amylase; (beta/al 98.4 4E-07 1.4E-11 69.6 6.0 61 8-68 122-185 (528)
9 2cc0_A Acetyl-xylan esterase; 96.5 0.0051 1.7E-07 40.4 5.4 51 11-62 46-97 (195)
10 2c71_A Glycoside hydrolase, fa 96.4 0.0074 2.5E-07 40.4 5.8 50 13-63 50-100 (216)
11 1ny1_A Probable polysaccharide 96.1 0.012 4.1E-07 40.0 5.5 51 11-62 85-137 (240)
12 2j13_A Polysaccharide deacetyl 96.0 0.014 4.6E-07 40.1 5.5 49 11-60 97-146 (247)
13 3rxz_A Polysaccharide deacetyl 96.0 0.016 5.5E-07 40.3 6.0 51 12-63 92-143 (300)
14 2iw0_A Chitin deacetylase; hyd 96.0 0.0093 3.2E-07 40.9 4.5 52 10-62 87-139 (254)
15 3cl6_A PUUE allantoinase; URIC 95.9 0.016 5.6E-07 40.5 5.8 54 11-66 110-164 (308)
16 2y8u_A Chitin deacetylase; hyd 95.9 0.015 5E-07 39.5 5.2 50 12-62 75-125 (230)
17 2vyo_A ECU11_0510, chitooligos 95.6 0.022 7.4E-07 39.1 5.2 50 13-63 72-124 (254)
18 3qbu_A Putative uncharacterize 95.6 0.025 8.7E-07 40.0 5.6 52 11-63 103-155 (326)
19 3s6o_A Polysaccharide deacetyl 95.2 0.045 1.5E-06 38.8 5.9 51 12-63 116-167 (321)
20 2c1i_A Peptidoglycan glcnac de 94.6 0.061 2.1E-06 40.1 5.5 59 11-72 278-337 (431)
21 3vus_A Poly-beta-1,6-N-acetyl- 92.7 0.36 1.2E-05 33.3 6.4 59 12-72 127-213 (268)
22 2w3z_A Putative deacetylase; P 91.9 0.21 7.3E-06 35.3 4.5 59 11-72 150-216 (311)
23 4hd5_A Polysaccharide deacetyl 89.6 0.59 2E-05 34.4 5.1 58 11-72 247-305 (360)
24 4f9d_A Poly-beta-1,6-N-acetyl- 84.1 1.9 6.4E-05 33.7 5.4 59 12-72 131-217 (618)
25 1r5j_A Putative phosphotransac 72.4 5.1 0.00017 28.3 4.3 38 29-67 172-212 (337)
26 1td9_A Phosphate acetyltransfe 70.1 4.8 0.00016 28.5 3.8 38 29-67 168-208 (329)
27 1ldd_A APC2WHB, anaphase promo 68.4 1.3 4.5E-05 25.8 0.4 21 9-29 49-71 (74)
28 1u7n_A Fatty acid/phospholipid 65.9 18 0.0006 25.7 6.1 45 27-73 137-185 (336)
29 4e4r_A Phosphate acetyltransfe 63.9 13 0.00046 26.5 5.1 46 26-72 162-211 (331)
30 2af4_C Phosphate acetyltransfe 61.2 8.5 0.00029 27.2 3.6 39 29-67 167-208 (333)
31 1u69_A Hypothetical protein; s 60.9 2.4 8.3E-05 27.5 0.7 12 62-73 106-117 (163)
32 1vi1_A Fatty acid/phospholipid 59.8 21 0.00073 25.4 5.6 44 28-73 136-183 (345)
33 2jro_A Uncharacterized protein 57.9 8.2 0.00028 22.7 2.6 38 19-56 29-66 (78)
34 1yco_A Branched-chain phosphot 57.3 19 0.00063 25.1 4.8 40 27-67 112-155 (279)
35 3uf6_A LMO1369 protein; struct 52.0 28 0.00097 24.4 5.1 46 26-72 129-179 (291)
36 1tsj_A Conserved hypothetical 45.2 5.4 0.00019 24.5 0.4 12 62-73 111-122 (139)
37 2og0_A Excisionase; protein-DN 43.3 20 0.00067 19.2 2.5 26 10-35 17-47 (52)
38 2pjp_A Selenocysteine-specific 41.8 18 0.0006 21.6 2.4 40 11-50 38-78 (121)
39 2ns0_A Hypothetical protein; r 39.6 9.2 0.00031 22.8 0.8 29 3-31 39-68 (85)
40 3oms_A PHNB protein; structura 39.4 7.6 0.00026 23.9 0.4 12 62-73 120-131 (138)
41 1vmi_A Putative phosphate acet 39.3 30 0.001 24.8 3.6 40 29-68 174-216 (355)
42 3lxy_A 4-hydroxythreonine-4-ph 37.0 37 0.0013 24.5 3.8 29 37-65 180-209 (334)
43 3hoa_A Thermostable carboxypep 34.0 17 0.00056 27.9 1.6 25 50-74 395-428 (509)
44 3dwc_A TCMCP-1, metallocarboxy 30.9 20 0.00067 27.5 1.5 45 30-74 351-421 (505)
45 1u7i_A Hypothetical protein; s 29.3 14 0.00048 21.8 0.4 12 62-73 117-128 (136)
46 1jmx_G Amine dehydrogenase; ox 28.7 14 0.00049 21.6 0.3 12 62-73 12-23 (79)
47 1smp_I Erwinia chrysanthemi in 28.5 26 0.00089 21.3 1.5 19 53-72 47-65 (101)
48 1pby_C Quinohemoprotein amine 28.5 14 0.00049 21.6 0.3 12 62-73 12-23 (79)
49 3i9x_A MUTT/nudix family prote 28.2 28 0.00096 21.6 1.7 37 17-63 64-100 (187)
50 3l20_A Putative uncharacterize 28.2 16 0.00053 23.7 0.5 13 61-73 147-159 (172)
51 3d2y_A N-acetylmuramoyl-L-alan 28.1 91 0.0031 21.2 4.5 41 22-62 103-146 (261)
52 1ifp_A PF3 inovirus, major coa 28.0 55 0.0019 16.7 2.5 15 43-57 29-43 (44)
53 3ayx_A Membrane-bound hydrogen 26.7 7.9 0.00027 30.0 -1.3 52 10-62 167-230 (596)
54 2ac1_A Invertase; five fold be 26.4 12 0.00042 28.2 -0.3 19 54-72 9-27 (541)
55 2fkb_A Putative nudix hydrolas 26.3 28 0.00096 21.2 1.4 34 19-61 64-97 (180)
56 1r7j_A Conserved hypothetical 26.3 95 0.0033 17.7 3.8 26 11-36 38-64 (95)
57 2ws9_2 P1; 3.00A {Equine rhini 25.8 14 0.00049 25.3 0.0 23 33-55 4-26 (230)
58 3id9_A MUTT/nudix family prote 25.6 37 0.0013 20.5 1.9 35 19-63 45-79 (171)
59 1st8_A Fructan 1-exohydrolase 25.3 13 0.00045 28.1 -0.3 18 55-72 9-26 (543)
60 1u6l_A Hypothetical protein; s 25.3 18 0.00062 21.8 0.4 12 62-73 119-130 (149)
61 3q1p_A Phosphohydrolase (MUTT/ 24.8 39 0.0013 21.5 2.0 34 18-61 88-121 (205)
62 3htu_A Vacuolar protein-sortin 23.8 57 0.0019 18.9 2.4 17 11-27 53-70 (79)
63 3hq2_A Bacillus subtilis M32 c 23.7 32 0.0011 26.3 1.6 45 30-74 349-418 (501)
64 1pm6_A Excisionase; antiparall 23.5 67 0.0023 18.1 2.6 26 11-36 18-48 (72)
65 3ugf_A Sucrose:(sucrose/fructa 23.0 19 0.00065 27.6 0.2 23 49-71 14-36 (546)
66 3gg6_A Nudix motif 18, nucleos 22.7 42 0.0014 19.8 1.7 34 19-62 45-78 (156)
67 3i7u_A AP4A hydrolase; nudix p 22.2 49 0.0017 19.5 2.0 34 18-61 23-56 (134)
68 1y4w_A EXO-inulinase; glycosid 21.9 17 0.00057 27.1 -0.3 18 55-72 9-26 (518)
69 3h95_A Nucleoside diphosphate- 21.4 37 0.0013 21.4 1.3 34 19-62 51-84 (199)
70 3fcm_A Hydrolase, nudix family 21.3 44 0.0015 20.9 1.7 33 18-60 67-99 (197)
71 1sjy_A MUTT/nudix family prote 21.3 48 0.0016 19.4 1.8 35 18-62 41-75 (159)
72 3lig_A Fructosyltransferase; f 20.8 25 0.00087 27.4 0.5 19 54-72 27-45 (634)
73 3sc7_X Inulinase; glycoside hy 20.8 25 0.00085 26.5 0.4 18 54-71 29-46 (516)
74 3fk9_A Mutator MUTT protein; s 20.7 51 0.0017 20.6 1.9 35 18-62 24-58 (188)
75 1wui_L Periplasmic [NIFE] hydr 20.1 25 0.00087 26.6 0.3 55 10-64 152-219 (534)
No 1
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1
Probab=99.97 E-value=7.1e-32 Score=194.62 Aligned_cols=74 Identities=35% Similarity=0.592 Sum_probs=72.0
Q ss_pred CCCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCC--CCceeecCCCCCCC
Q psy11172 1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVK--PRYLHNNSRTISSP 74 (75)
Q Consensus 1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~--P~~~W~~D~Fg~s~ 74 (75)
+||++++|+.+++ |+||++||||||||||||+|||+++++|+|+||++|++||+++||+. |+++|++|+||||+
T Consensus 77 ~w~~~~~Pe~~~~vk~lV~~Grle~vgG~wve~D~~~~~~eslirQl~~G~~~~~~~fG~~~~~~~~W~pD~FG~s~ 153 (298)
T 1o7d_A 77 RWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPRVAWHIDPFGHSR 153 (298)
T ss_dssp HHHHTSCHHHHHHHHHHHHTTSEEESSCSSSCBCSSSCCHHHHHHHHHHHHHHHHHHHGGGGCCSEEEESSSSSCCH
T ss_pred HHHHhcCHHHHHHHHHHHHCCCEEEECceeeccccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCceeEeCCCCCccH
Confidence 4899999999999 99999999999999999999999999999999999999999999997 99999999999995
No 2
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...
Probab=99.96 E-value=5.4e-30 Score=206.70 Aligned_cols=74 Identities=45% Similarity=0.605 Sum_probs=72.5
Q ss_pred CCCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172 1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP 74 (75)
Q Consensus 1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~ 74 (75)
+||++++|+.+++ |+||++|||||+||||||+|||+++|+|+|+||++|++|++++||++|+++|+|||||||+
T Consensus 136 ~w~~e~~Pe~~~~vk~lV~~Grle~~gG~Wv~~De~~~~~EslirQl~~G~~~~~~~FG~~~~~~W~pD~FG~s~ 210 (1045)
T 3bvx_A 136 RFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIAPFGHSP 210 (1045)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCSSSBCT
T ss_pred HHHHHCCHHHHHHHHHHHhCCCEEEECCccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCceEEcCCCCCccH
Confidence 4899999999999 9999999999999999999999999999999999999999999999999999999999996
No 3
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}
Probab=99.93 E-value=5.5e-27 Score=186.90 Aligned_cols=72 Identities=13% Similarity=0.050 Sum_probs=67.0
Q ss_pred CCCCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172 1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP 74 (75)
Q Consensus 1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~ 74 (75)
+||.+++|+.+++ |+||++|||| |||+|||+||++++++++|+||++|++|+++ ||++|+++|++|+||||+
T Consensus 62 ~~~~~~~p~~~~~vk~lv~~Gr~e-igg~~v~~D~~~~~~es~irq~~~G~~~~~~-fG~~~~~~w~~D~FG~s~ 134 (899)
T 3lvt_A 62 DDYLQVRPEKKEAVKKAVQAGKLK-IGPFYILQDDFLISSESNVRNMLIGHLESQK-WGAPVQLGYFPDTFGNMG 134 (899)
T ss_dssp HHHHHHCGGGHHHHHHHHHTTSEE-CCSBSSCCCGGGSCHHHHHHHHHHHHHHHHH-HTCCCCCEEESCCCT---
T ss_pred HHHHhhCHHHHHHHHHHHHcCCEE-ECchhccccccCCCHHHHHHHHHHHHHHHHH-cCCCCceeEeCCCCCCch
Confidence 3788899999999 9999999999 8999999999999999999999999999999 999999999999999997
No 4
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Probab=99.93 E-value=9.5e-27 Score=185.33 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=68.0
Q ss_pred CCCCCCCCChhhh-HHHHhcCceEEEccee-eeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172 1 MSWSGEIPNHKPI-VSLVKSGQLEIVTGGW-VMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP 74 (75)
Q Consensus 1 ~Ww~~~~~~~k~~-k~lV~~GqlE~v~GgW-v~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~ 74 (75)
+||.+++|+.+++ |+||++||||| ||| ||+|||+++++++|+||++|++|+++ ||++|+++|++||||||+
T Consensus 81 ~~~~~~~p~~~~~vk~lV~~Grlei--G~wYv~~D~~~~~~es~irq~~~G~~~~~~-fG~~~~~~w~pD~FG~s~ 153 (923)
T 2wyh_A 81 DDYLKVRPEREPEIRQAIASGKLRI--GPFYILQDDFLTSSESNVRNMLIGKEDCDR-WGASVPLGYFPDTFGNMG 153 (923)
T ss_dssp HHHHHHCGGGHHHHHHHHHTTSEEC--CSBSSCBCSTTSCHHHHHHHHHHHHHHHHH-HTCCCSSEEESSCSSBCT
T ss_pred HHHHHHCHHHHHHHHHHHHcCCEEE--eeeeeccccccCCHHHHHHHHHHHHHHHHH-cCCCCceeEecCCCCcch
Confidence 3788889999999 99999999997 788 99999999999999999999999999 999999999999999997
No 5
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Probab=99.36 E-value=2.1e-13 Score=106.56 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=64.7
Q ss_pred CCCCCCChhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172 3 WSGEIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP 74 (75)
Q Consensus 3 w~~~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~ 74 (75)
+++..|+..+. |+++++||+|+++|+|++||.++++.+++++||..|.++++ +||++|++.|+++.+ +|+
T Consensus 58 l~~~~p~l~~~ik~l~~~G~vE~l~~~~~Hpi~~l~p~e~~~~QI~~g~~~~~-~FG~~P~G~WlPE~~-ys~ 128 (659)
T 1k1x_A 58 IEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDYAR-KLGYDAKGVWLTERV-WQP 128 (659)
T ss_dssp HHHHCHHHHHHHHHHHHTTCEEEEBCCTTCCCGGGSCHHHHHHHHHHHHHHHH-HTTCCCCEEECGGGC-BCT
T ss_pred HHHHCHHHHHHHHHHHHCCCEEEEccCcccccccCCCHHHHHHHHHHHHHHHH-HcCCCCCEEECcccc-cCh
Confidence 34556788888 99999999999999999999999999999999999999999 999999999999994 776
No 6
>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A*
Probab=98.59 E-value=5.2e-08 Score=75.56 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=60.7
Q ss_pred CCCChhhh-HHHHhcCceEEEcceeeeeccCCCC-HHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172 6 EIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANSH-YYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP 74 (75)
Q Consensus 6 ~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~-~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~ 74 (75)
-.++.-.. |+|+++|++||+++++..+...+.. -+++..||..|.+.++++||.+|++.|++.. +++|
T Consensus 119 ~~~dii~~fr~L~~~G~iElit~~~tH~~lPLl~~~e~~~~QI~~g~~~~~~~FG~~P~G~WlpE~-ay~~ 188 (562)
T 3n98_A 119 INGDIIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKPKGIWLPEC-AYRP 188 (562)
T ss_dssp TTTCHHHHHHHHHHTTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCSBEECGGG-CBCC
T ss_pred hhhHHHHHHHHHHHCCCEEEEcCCchhhHhhcCCCHHHHHHHHHHHHHHHHHHcCCCCCEEECccc-ceeC
Confidence 34566778 9999999999999999999999886 7999999999999999999999999999875 5554
No 7
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=98.58 E-value=4.9e-08 Score=75.38 Aligned_cols=68 Identities=12% Similarity=0.019 Sum_probs=60.9
Q ss_pred CCCChhhh-HHHHhcCceEEEcceeeeeccCCC-CHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCCCC
Q psy11172 6 EIPNHKPI-VSLVKSGQLEIVTGGWVMTDEANS-HYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTISSP 74 (75)
Q Consensus 6 ~~~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~-~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~s~ 74 (75)
-.++.-.. |+|+++|++||+++++..+-..+. +-+++..|+..|.+.++++||.+|++.|++.. +++|
T Consensus 140 ~~~dii~~fr~L~~~G~iEiit~~~tH~~lPLl~~~e~~~~QI~~g~~~~~~~FG~~P~G~WlpE~-ay~~ 209 (540)
T 3p0b_A 140 LSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWAQIKTGVSTYRRHFAKDPTGFWLPEM-AYRP 209 (540)
T ss_dssp TTTCHHHHHHHHHHHTSEEEEEECTTCBCGGGCSCHHHHHHHHHHHHHHHHHHHSSCCCBEECGGG-CBCC
T ss_pred hhHHHHHHHHHHHHCCCEEEEcCCchhhHHhcCCCHHHHHHHHHHHHHHHHHHhCCCCCEEECccc-ceeC
Confidence 34566778 999999999999999999999998 58999999999999999999999999999875 5554
No 8
>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4
Probab=98.40 E-value=4e-07 Score=69.64 Aligned_cols=61 Identities=20% Similarity=0.048 Sum_probs=55.6
Q ss_pred CChhhh-HHHHhcCceEEEcceeeeeccCCCC--HHHHHHHHHHHHHHHHhhhCCCCCceeecC
Q psy11172 8 PNHKPI-VSLVKSGQLEIVTGGWVMTDEANSH--YYSMIQQLTHGQQWLLTNIGVKPRYLHNNS 68 (75)
Q Consensus 8 ~~~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~--~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D 68 (75)
++.-.. |+|+++|++|++++++..+-..+.. -+++..||..|.+.++++||.+|++.|++-
T Consensus 122 ~~li~~~r~L~~~G~vEll~~~y~H~ilPLl~d~~ed~~~QI~~g~~~~~~~FG~~P~G~WlpE 185 (528)
T 2b5d_X 122 GNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVNAQITVGVKNYEKHMKKHPRGIWLAE 185 (528)
T ss_dssp TCTHHHHHHHHHHTSEEEEEECTTCBCGGGGTTCHHHHHHHHHHHHHHHHHHHSSCCSEEECGG
T ss_pred HHHHHHHHHHHHCCCEEEEcCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHhCCCCCEEECch
Confidence 445567 9999999999999999999998766 799999999999999999999999999874
No 9
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=96.53 E-value=0.0051 Score=40.35 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=47.3
Q ss_pred hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172 11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62 (75)
Q Consensus 11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~ 62 (75)
.+. |+++++| .||.+.+|..++....+.+.+.++|....+.|++..|.+|+
T Consensus 46 ~~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~ 97 (195)
T 2cc0_A 46 PSLVRAQVDAG-MWVANHSYTHPHMTQLGQAQMDSEISRTQQAIAGAGGGTPK 97 (195)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHTTSCCCS
T ss_pred HHHHHHHHHCC-CEEEcCCCCccccccCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 356 9999999 89999999999999999999999999999999999998876
No 10
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=96.43 E-value=0.0074 Score=40.44 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=46.7
Q ss_pred h-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172 13 I-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY 63 (75)
Q Consensus 13 ~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~ 63 (75)
. |+++++| .||.+.+|..++....+.+.+..+|....+.|++.+|.+|+.
T Consensus 50 ~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~ 100 (216)
T 2c71_A 50 IIRRMVNSG-HEIGNHSWSYSGMANMSPDQIRKSIADTNAVIQKYAGTTPKF 100 (216)
T ss_dssp HHHHHHHTT-CEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSCCCSE
T ss_pred HHHHHHHCC-CEEeeCCcCCcchhhCCHHHHHHHHHHHHHHHHHhhCCCCeE
Confidence 6 9999999 899999999999988999999999999999999999987763
No 11
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=96.08 E-value=0.012 Score=39.98 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=46.7
Q ss_pred hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCC-CC
Q psy11172 11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVK-PR 62 (75)
Q Consensus 11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~-P~ 62 (75)
.+. |+++++| .||.+.+|..++....+.+.+..+|....+.|++.+|.+ |+
T Consensus 85 p~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~ 137 (240)
T 1ny1_A 85 PQLIKRMSDEG-HIIGNHSFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNL 137 (240)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHCc-CChhcCCccccccccCCHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 356 9999999 899999999999998999999999999999999999987 54
No 12
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=96.01 E-value=0.014 Score=40.08 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=45.7
Q ss_pred hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCC
Q psy11172 11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVK 60 (75)
Q Consensus 11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~ 60 (75)
.+. |+++++| .||.+.+|..++....+.+.+..+|....+.|++.+|.+
T Consensus 97 p~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~ 146 (247)
T 2j13_A 97 KDLLLRMKDEG-HIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQK 146 (247)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHCC-CEEEecCCCCcChhhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 356 9999999 799999999999999999999999999999999999987
No 13
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}
Probab=96.00 E-value=0.016 Score=40.29 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=47.5
Q ss_pred hh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172 12 PI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY 63 (75)
Q Consensus 12 ~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~ 63 (75)
+. |+++++| .||.+.||...+...-+.+.+.++|..+.+.|++.+|.+|+.
T Consensus 92 ~~v~~~~~~G-hEIg~H~~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~~p~~ 143 (300)
T 3rxz_A 92 EPIRSIARAG-HEIAHHGYLHESLVGADEDTERKILTRGIEALEEVAGVHPVG 143 (300)
T ss_dssp HHHHHHHHTT-CEEEECCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHSCCCCE
T ss_pred HHHHHHHHcC-CEEEecCCCCcccccCCHHHHHHHHHHHHHHHHHHhCCCCcE
Confidence 56 8999999 899999999999999999999999999999999999998864
No 14
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3
Probab=95.96 E-value=0.0093 Score=40.94 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=47.6
Q ss_pred hhhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172 10 HKPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62 (75)
Q Consensus 10 ~k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~ 62 (75)
..+. |+++++| .||.+.+|..++....+.+.+.++|....+.|++..|.+|+
T Consensus 87 ~p~~lr~i~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~ 139 (254)
T 2iw0_A 87 NPDTIRRMRADG-HLVGSHTYAHPDLNTLSSADRISQMRQLEEATRRIDGFAPK 139 (254)
T ss_dssp HHHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCEES
T ss_pred CHHHHHHHHHCC-CEEEeeccCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3467 9999999 89999999999999999999999999999999999998765
No 15
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=95.94 E-value=0.016 Score=40.55 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=48.5
Q ss_pred hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceee
Q psy11172 11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHN 66 (75)
Q Consensus 11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~ 66 (75)
.+. |+++++| .||.+.+|..++....+.+.+..+|....+.|++.+|.+|+ +|.
T Consensus 110 p~~v~~i~~~G-heIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~~p~-g~r 164 (308)
T 3cl6_A 110 PDVIRAMVAAG-HEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGERPL-GWY 164 (308)
T ss_dssp HHHHHHHHHTT-CEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSSCCS-EEC
T ss_pred HHHHHHHHHcC-CEEEeCCCCCcccccCCHHHHHHHHHHHHHHHHHHhCCCcc-eEE
Confidence 356 9999999 79999999999998899999999999999999999999887 444
No 16
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=95.89 E-value=0.015 Score=39.50 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=46.6
Q ss_pred hh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172 12 PI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62 (75)
Q Consensus 12 ~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~ 62 (75)
+. |+++++| .||.+.+|..++....+.+.+..+|....+.|++..|..|+
T Consensus 75 ~~~~~~~~~G-heIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~ 125 (230)
T 2y8u_A 75 GLLQRMRDEG-HQVGAHTYDHVSLPSLGYDGIASQMTRLEEVIRPALGVAPA 125 (230)
T ss_dssp HHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSSCBS
T ss_pred HHHHHHHHCC-CEEEecccCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 56 9999999 89999999999999999999999999999999999998775
No 17
>2vyo_A ECU11_0510, chitooligosaccharide deacetylase; CE4 esterase, native protein, microsporidian, chitin deacetylase, hydrolase, inactive; 1.50A {Encephalitozoon cuniculi}
Probab=95.60 E-value=0.022 Score=39.07 Aligned_cols=50 Identities=10% Similarity=-0.012 Sum_probs=46.4
Q ss_pred h-HHHHhcCceEEEcceeee--eccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172 13 I-VSLVKSGQLEIVTGGWVM--TDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY 63 (75)
Q Consensus 13 ~-k~lV~~GqlE~v~GgWv~--~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~ 63 (75)
. |+++++| .||.+.+|.. ++....+.+.+.++|....+.|++..|.+|+.
T Consensus 72 ~~~~i~~~G-heIg~Ht~~H~~~~l~~ls~~~~~~ei~~~~~~l~~~~G~~~~~ 124 (254)
T 2vyo_A 72 LYRRAVEEG-HNVALRVDPSMDEGYQCLSQDALENNVDREIDTIDGLSGTEIRY 124 (254)
T ss_dssp HHHHHHHTT-CEEEEECCGGGTTCGGGSCHHHHHHHHHHHHHHHHHHHTSCCCE
T ss_pred HHHHHHhCC-CEEEecCCCCCCcCcccCCHHHHHHHHHHHHHHHHHHHCCCCeE
Confidence 6 9999999 8999999999 88888899999999999999999999988764
No 18
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=95.57 E-value=0.025 Score=39.98 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=47.6
Q ss_pred hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172 11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY 63 (75)
Q Consensus 11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~ 63 (75)
.+. |+++++|. ||.+.||...+...-+.+.+.++|..+.+.|++.+|.+|+.
T Consensus 103 p~~v~~i~~~Gh-EIg~H~~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~~p~~ 155 (326)
T 3qbu_A 103 PEQMKMIVDAGH-EVGAHGYSHENPIAMSTKQEEDVLLKSVELIKDLTGKAPTG 155 (326)
T ss_dssp HHHHHHHHTTTC-EEEBCCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSSCCCE
T ss_pred HHHHHHHHHcCC-EEEeCCCCCcChhhCCHHHHHHHHHHHHHHHHHHHCCCCcE
Confidence 356 89999997 99999999999999999999999999999999999988864
No 19
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6
Probab=95.20 E-value=0.045 Score=38.84 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=47.5
Q ss_pred hh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172 12 PI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY 63 (75)
Q Consensus 12 ~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~ 63 (75)
++ ++++++| .||.+.+|...+....+.+.+.++|....+.|++..|.+|+.
T Consensus 116 ~~v~~i~~~G-hEIg~H~~~H~~~~~ls~~~~~~ei~~~~~~l~~~~G~~p~g 167 (321)
T 3s6o_A 116 ELARAFVELG-HEIACHGWRWIHYQDMTPEREAEHMRLGMEAIERVTGVRPLG 167 (321)
T ss_dssp HHHHHHHHTT-CEEEECCSSCSCCTTCCHHHHHHHHHHHHHHHHHHHSCCCCE
T ss_pred HHHHHHHHcC-CEEeeCCccccccccCCHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 56 8999999 899999999999999999999999999999999999998873
No 20
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase, peptidoglycan deacetylase, metalloenzyme, D275N mutant, hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae} SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Probab=94.62 E-value=0.061 Score=40.09 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=50.5
Q ss_pred hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCC
Q psy11172 11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTIS 72 (75)
Q Consensus 11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~ 72 (75)
.+. |+++++| .||.+.+|..++....+.+.+..+|....+.|.+..|..|+. -.-|||.
T Consensus 278 p~~lr~m~~~G-heIgnHT~sH~~l~~ls~~~~~~EI~~s~~~L~~~~G~~~~~--fr~PyG~ 337 (431)
T 2c1i_A 278 EDLVKRIKSEG-HVVGNHSWSHPILSQLSLDEAKKQITDTEDVLTKVLGSSSKL--MRPPYGA 337 (431)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHSCCCCE--ECCGGGC
T ss_pred HHHHHHHHHCC-CEEeecCCCCcccccCCHHHHHHHHHHHHHHHHHhhCCCCeE--EECCCCC
Confidence 356 9999999 899999999999988899999999999999999999987653 3345554
No 21
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=92.74 E-value=0.36 Score=33.27 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=44.9
Q ss_pred hh-HHHHhcCceEEEcceeeeeccCC-----------------------CC----HHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172 12 PI-VSLVKSGQLEIVTGGWVMTDEAN-----------------------SH----YYSMIQQLTHGQQWLLTNIGVKPRY 63 (75)
Q Consensus 12 ~~-k~lV~~GqlE~v~GgWv~~Dea~-----------------------~~----~~~~i~Q~~~G~~fl~~~fg~~P~~ 63 (75)
+. |+++++|-.||.+.+|.+|.... .+ -+.+..+|....+.|++.+|..|+.
T Consensus 127 ~~lr~m~~~G~~eIgsHT~~hH~~~~~~~~G~~~p~~~~~~y~~~~~~~es~~~~~~~i~~ei~~s~~~l~~~~G~~~~~ 206 (268)
T 3vus_A 127 QQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEVNPHV 206 (268)
T ss_dssp HHHHHHHHTTSEEECBCCSSCCSBCCCC-----CBTTSSCCEETTTTEECCHHHHHHHHHHHHHHHHHHHHHHSCCCCCE
T ss_pred HHHHHHHHCCCeEEecCccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 45 99999999999999998554211 01 3457788999999999999998874
Q ss_pred eeecCCCCC
Q psy11172 64 LHNNSRTIS 72 (75)
Q Consensus 64 ~W~~D~Fg~ 72 (75)
-.-|||.
T Consensus 207 --fr~PyG~ 213 (268)
T 3vus_A 207 --FVWPYGE 213 (268)
T ss_dssp --EECGGGC
T ss_pred --EEeCCCc
Confidence 2446664
No 22
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=91.88 E-value=0.21 Score=35.33 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=46.6
Q ss_pred hhh-HHHHhcCceEEEcceeeeeccC-----CCCHHHHHHHHHHHHHHHHhhhC--CCCCceeecCCCCC
Q psy11172 11 KPI-VSLVKSGQLEIVTGGWVMTDEA-----NSHYYSMIQQLTHGQQWLLTNIG--VKPRYLHNNSRTIS 72 (75)
Q Consensus 11 k~~-k~lV~~GqlE~v~GgWv~~Dea-----~~~~~~~i~Q~~~G~~fl~~~fg--~~P~~~W~~D~Fg~ 72 (75)
.+. |+++++| .||.+.+|..++.. ..+.+.+.++|....+.|++..| .+|+. -.-|+|.
T Consensus 150 p~~vr~i~~~G-heIgnHt~sH~~~~~~~~~~ls~~~~~~Ei~~~~~~L~~~~G~~~~p~~--fR~PyG~ 216 (311)
T 2w3z_A 150 KPILQRQITEG-HALGIHSFSHVYSLLYPNRVGNTQQIVSEVTRTQNALKDQLGQNFKTGV--WRYPGGH 216 (311)
T ss_dssp HHHHHHHHHTT-CEEEECCSSCCHHHHSGGGBCCHHHHHHHHHHHHHHHHHHHCTTBCCCE--ECCTTCG
T ss_pred HHHHHHHHHCC-CeeeccCCccccccccccCCCCHHHHHHHHHHHHHHHHHHhCCCCCCcE--EECCCCC
Confidence 466 9999999 89999999887653 34789999999999999999999 55542 3344553
No 23
>4hd5_A Polysaccharide deacetylase; TIM barrel, hydrolase; 1.90A {Bacillus cereus}
Probab=89.60 E-value=0.59 Score=34.36 Aligned_cols=58 Identities=12% Similarity=-0.027 Sum_probs=46.7
Q ss_pred hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCceeecCCCCC
Q psy11172 11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTIS 72 (75)
Q Consensus 11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D~Fg~ 72 (75)
.+. |++.++|-+||-+.++..++....+- .-++|....+.|.+.+|..|+. -+=|||.
T Consensus 247 w~qIrem~~~G~~eIGsHT~sH~~L~~ls~--~e~EI~~Sk~~Le~~lG~~v~~--FAYPyG~ 305 (360)
T 4hd5_A 247 TSEIKEMVDSGIFSVQSHTATHADLPKITN--YEEELKGSKEKLEKITGKPVIA--IAYXFGH 305 (360)
T ss_dssp HHHHHHHHHTTSEEEEECCSSCCCGGGCSC--HHHHHHHHHHHHHHHHSSCCCE--EECGGGC
T ss_pred HHHHHHHHHcCCceeeccCCcccccccCCH--HHHHHHHHHHHHHHHhCCCCcE--EEcCCCC
Confidence 344 99999999999999999998765543 3479999999999999998864 3456664
No 24
>4f9d_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; family 4 carbohydrate esterase, TIM barrel, hydrolase, deace carbohydrate/sugar binding; HET: MES; 1.90A {Escherichia coli} PDB: 4f9j_A*
Probab=84.07 E-value=1.9 Score=33.66 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=45.2
Q ss_pred hh-HHHHhcCceEEEcceee-eeccCC-----------C-----------C----HHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172 12 PI-VSLVKSGQLEIVTGGWV-MTDEAN-----------S-----------H----YYSMIQQLTHGQQWLLTNIGVKPRY 63 (75)
Q Consensus 12 ~~-k~lV~~GqlE~v~GgWv-~~Dea~-----------~-----------~----~~~~i~Q~~~G~~fl~~~fg~~P~~ 63 (75)
+. |++.++|-+||-+.+|. .++... + + -+.+.++|....+.|++.+|..|+.
T Consensus 131 ~qlrem~~sG~~EIGsHT~shH~~l~~~p~G~~~Pa~l~r~~~~~~~~~es~~e~~~~i~~EL~~Sk~~Le~~lG~~~~~ 210 (618)
T 4f9d_A 131 QQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTKVEVNPHV 210 (618)
T ss_dssp HHHHHHHHHTSEEECBCCSSCCSEEECSTTCCEEEGGGSCCEETTTTEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHCCCcEEeecccccccccccccccccccchhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 55 99999999999999998 433211 0 1 2568899999999999999998874
Q ss_pred eeecCCCCC
Q psy11172 64 LHNNSRTIS 72 (75)
Q Consensus 64 ~W~~D~Fg~ 72 (75)
-.=|||.
T Consensus 211 --FayPyG~ 217 (618)
T 4f9d_A 211 --FVWPYGE 217 (618)
T ss_dssp --EECGGGC
T ss_pred --EEcCCCC
Confidence 2446664
No 25
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=72.40 E-value=5.1 Score=28.33 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=30.7
Q ss_pred eeeeccCC---CCHHHHHHHHHHHHHHHHhhhCCCCCceeec
Q psy11172 29 WVMTDEAN---SHYYSMIQQLTHGQQWLLTNIGVKPRYLHNN 67 (75)
Q Consensus 29 Wv~~Dea~---~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~ 67 (75)
.+..|.+. ++-+.+++-+..+..+++. ||+.||++=..
T Consensus 172 ~~l~D~~~n~~~t~e~l~~ia~~~~~~~~~-~Gi~PrVAlLs 212 (337)
T 1r5j_A 172 YVFADCAINIDPTAQELAEIAVNTAETAKI-FDIDPKIAMLS 212 (337)
T ss_dssp EEESCSSSCSSCCHHHHHHHHHHHHHHHHH-TTCCCCEEEEC
T ss_pred EEEEeccccCCCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEe
Confidence 44666654 6688888888999999999 99999998643
No 26
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Probab=70.09 E-value=4.8 Score=28.49 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=31.0
Q ss_pred eeeeccC---CCCHHHHHHHHHHHHHHHHhhhCCCCCceeec
Q psy11172 29 WVMTDEA---NSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNN 67 (75)
Q Consensus 29 Wv~~Dea---~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~ 67 (75)
.+..|.+ .|+-+.+++-+..+..+++. ||+.||++=..
T Consensus 168 ~~~tD~~~n~~pt~e~l~~ia~~~~~~~~~-~Gi~PrVAlLs 208 (329)
T 1td9_A 168 YVFADCAINIAPDSQDLAEIAIESANTAKM-FDIEPRVAMLS 208 (329)
T ss_dssp EEEECSSSCSSCCHHHHHHHHHHHHHHHHT-TTCCCCEEEEC
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEe
Confidence 4455544 45689999999999999999 99999998765
No 27
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=68.37 E-value=1.3 Score=25.77 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=15.9
Q ss_pred Chhhh-HHHHhcCceEEE-ccee
Q psy11172 9 NHKPI-VSLVKSGQLEIV-TGGW 29 (75)
Q Consensus 9 ~~k~~-k~lV~~GqlE~v-~GgW 29 (75)
+.++- .++|++|++|.+ ||-|
T Consensus 49 eL~~fL~~~v~e~kL~~~~gG~Y 71 (74)
T 1ldd_A 49 QLEGYLNTLADEGRLKYIANGSY 71 (74)
T ss_dssp HHHHHHHHHHHTTSEECCTTTEE
T ss_pred HHHHHHHHHHhCCeEEEeCCCEE
Confidence 34566 899999999986 5544
No 28
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, enterococcus faecalis V583, PSI, protein structure initiative; HET: MSE; 2.26A {Enterococcus faecalis} SCOP: c.77.1.4
Probab=65.93 E-value=18 Score=25.68 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=35.6
Q ss_pred ceeeeeccCC---CCHHHHHHHHHHHHHHHHhhhCC-CCCceeecCCCCCC
Q psy11172 27 GGWVMTDEAN---SHYYSMIQQLTHGQQWLLTNIGV-KPRYLHNNSRTISS 73 (75)
Q Consensus 27 GgWv~~Dea~---~~~~~~i~Q~~~G~~fl~~~fg~-~P~~~W~~D~Fg~s 73 (75)
+-.+..|.+. ++-+.+++-...|..+++..||+ .||++=++ ||-.
T Consensus 137 ~~~~l~D~g~n~~~~~e~L~~~a~~~~~~a~~~~Gi~~PrValLN--~Ge~ 185 (336)
T 1u7n_A 137 KGFDMLDLGANADNKPEHLVQYAVLGSFYAEKVRNVQNPRVGLLN--NGTE 185 (336)
T ss_dssp CEEEEECSSSCSCCCHHHHHHHHHHHHHHHHHTTCCSSCCEEEEC--SCC-
T ss_pred ceEEEEeccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEe--CcCC
Confidence 4467777766 77788888888899999998998 99999875 6653
No 29
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for structural genomics of infectious diseases, csgid; HET: TRS; 1.44A {Staphylococcus aureus subsp}
Probab=63.86 E-value=13 Score=26.49 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=36.5
Q ss_pred cceeeeeccCC---CCHHHHHHHHHHHHHHHHhhhCCCCCceeecC-CCCC
Q psy11172 26 TGGWVMTDEAN---SHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNS-RTIS 72 (75)
Q Consensus 26 ~GgWv~~Dea~---~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D-~Fg~ 72 (75)
+|-.+..|.+. |+-+.+++-...+..+.+. ||+.||++=+.- .||.
T Consensus 162 ~~~~~~~D~gvN~~P~~e~l~~ia~~a~~~a~~-~Gi~PkVAlLs~s~~Gs 211 (331)
T 4e4r_A 162 DEQYIFGDCAINPELDSQGLAEIAVESAKSALS-FGMDPKVAMLSFSTKGS 211 (331)
T ss_dssp TEEEEEESSSSCSCCCHHHHHHHHHHHHHHHHH-TTCCCEEEEECSSSTTS
T ss_pred CCcEEEEeCeecCCCCHHHHHHHHHHHHHHHHH-cCCCCeEEEEeCCCCCC
Confidence 56678899885 5778888888899999985 999999987663 4453
No 30
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=61.17 E-value=8.5 Score=27.24 Aligned_cols=39 Identities=5% Similarity=-0.005 Sum_probs=31.7
Q ss_pred eeeeccC---CCCHHHHHHHHHHHHHHHHhhhCCCCCceeec
Q psy11172 29 WVMTDEA---NSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNN 67 (75)
Q Consensus 29 Wv~~Dea---~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~ 67 (75)
.+..|.. .|+-+.+++-...+..+++..||+.||++=..
T Consensus 167 ~~~tD~~vn~~pt~e~l~~ia~~~~~~~~~~~Gi~PrVAlLs 208 (333)
T 2af4_C 167 FLFADSGMVEMPSVEDVANIAVISAKTFELLVQDVPKVAMLS 208 (333)
T ss_dssp EEEETSSSCSSCCHHHHHHHHHHHHHHHHHHHCSCCEEEEEC
T ss_pred EEEEeCcccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 4555554 45578999999999999999999999998765
No 31
>1u69_A Hypothetical protein; structural genomics, MSCG, pseudomonas aeruginosa PAO1, HYPO protein, protein structure initiative (PSI); 1.60A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=60.87 E-value=2.4 Score=27.48 Aligned_cols=12 Identities=8% Similarity=-0.335 Sum_probs=11.3
Q ss_pred CceeecCCCCCC
Q psy11172 62 RYLHNNSRTISS 73 (75)
Q Consensus 62 ~~~W~~D~Fg~s 73 (75)
+.||..|+||+|
T Consensus 106 ~~G~v~D~fGv~ 117 (163)
T 1u69_A 106 ACGWCRDKWGIS 117 (163)
T ss_dssp STTEEECTTSCE
T ss_pred EEEEEECCCCCE
Confidence 899999999986
No 32
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=59.76 E-value=21 Score=25.42 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=36.0
Q ss_pred eeeeeccCC---CCHHHHHHHHHHHHHHHHhhhCC-CCCceeecCCCCCC
Q psy11172 28 GWVMTDEAN---SHYYSMIQQLTHGQQWLLTNIGV-KPRYLHNNSRTISS 73 (75)
Q Consensus 28 gWv~~Dea~---~~~~~~i~Q~~~G~~fl~~~fg~-~P~~~W~~D~Fg~s 73 (75)
.-+..|... ++-+.+++-...+..+++..||+ .||++=++ ||-.
T Consensus 136 ~~~l~D~g~n~~~~~e~L~~~a~~~~~~a~~~~Gi~~PrValLN--~Ge~ 183 (345)
T 1vi1_A 136 GFLLLDVGANVDAKPEHLVQYAIMGSVYSQQVRGVTSPRVGLLN--VGTE 183 (345)
T ss_dssp CEEEECSSSCSSCCHHHHHHHHHHHHHHHHHTSCCSSCEEEEEE--SSSS
T ss_pred EEEEEeccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEe--CCCC
Confidence 367778776 77788888889999999988998 99999875 6654
No 33
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=57.86 E-value=8.2 Score=22.73 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=32.3
Q ss_pred cCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhh
Q psy11172 19 SGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTN 56 (75)
Q Consensus 19 ~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~ 56 (75)
-|++||-+|--++|+.+.+-..+++.++-.-..-|..+
T Consensus 29 ~G~FeFd~GkillP~~~d~~~~~~~sEIN~~I~~L~~e 66 (78)
T 2jro_A 29 LGRLEFEKGRFLLPRKSLPKVKQAILELNELIEAQNHQ 66 (78)
T ss_dssp TEEEEEETTEECCCSSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred cccEEEcCCEEeCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999998887766655544
No 34
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=57.26 E-value=19 Score=25.13 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=33.0
Q ss_pred ceeeeeccCC---CCHHHHHHHHHHHHHHHHhhhCC-CCCceeec
Q psy11172 27 GGWVMTDEAN---SHYYSMIQQLTHGQQWLLTNIGV-KPRYLHNN 67 (75)
Q Consensus 27 GgWv~~Dea~---~~~~~~i~Q~~~G~~fl~~~fg~-~P~~~W~~ 67 (75)
|-.++.|.+. |+-+.+++-...|..+.+. ||+ .||++=+.
T Consensus 112 ~~~~l~D~g~N~~p~~e~l~~ia~~a~~~a~~-lGi~~PkVAlLs 155 (279)
T 1yco_A 112 KTFLLTDCAMNIAPTQATLIEIVENAKEVAQK-LGLHHPKIALLS 155 (279)
T ss_dssp CEEEEECSSSCSSCCHHHHHHHHHHHHHHHHH-TTCSSCEEEEEC
T ss_pred CEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHH-hCCCCCeEEEEe
Confidence 4478888875 4578888888899999988 999 99998765
No 35
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=52.00 E-value=28 Score=24.35 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=36.4
Q ss_pred cceeeeeccCC---CCHHHHHHHHHHHHHHHHhhhCCC-CCceeec-CCCCC
Q psy11172 26 TGGWVMTDEAN---SHYYSMIQQLTHGQQWLLTNIGVK-PRYLHNN-SRTIS 72 (75)
Q Consensus 26 ~GgWv~~Dea~---~~~~~~i~Q~~~G~~fl~~~fg~~-P~~~W~~-D~Fg~ 72 (75)
+|-.+..|.+. |+-+.+++-...+..+.+. ||+. ||++=+. ..||.
T Consensus 129 ~~~~~~~D~gvN~~P~~e~la~ia~~aa~~ar~-~Gie~PkVAlLS~s~~gs 179 (291)
T 3uf6_A 129 HKPLLITDCAMNVAPKTKEKIAITENALAVAHQ-IGITNPKIALLSAVEEVT 179 (291)
T ss_dssp SSCEEEECSSSCSSCCHHHHHHHHHHHHHHHHH-HTCCSCCEEEECSCSSCC
T ss_pred CCcEEEeeceeecCCCHHHHHHHHHHHHHHHHH-hCCCCCeEEEEeCCccCC
Confidence 56678888886 4678888888888888887 9996 9998876 45664
No 36
>1tsj_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, nysgxrc; 2.60A {Staphylococcus aureus subsp} SCOP: d.32.1.7
Probab=45.24 E-value=5.4 Score=24.49 Aligned_cols=12 Identities=8% Similarity=-0.006 Sum_probs=11.0
Q ss_pred CceeecCCCCCC
Q psy11172 62 RYLHNNSRTISS 73 (75)
Q Consensus 62 ~~~W~~D~Fg~s 73 (75)
+.||..||||++
T Consensus 111 ~~g~v~Dp~G~~ 122 (139)
T 1tsj_A 111 EFAWVQDKFGVS 122 (139)
T ss_dssp EEEEEECTTSCE
T ss_pred eEEEEECCCCCE
Confidence 789999999985
No 37
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=43.29 E-value=20 Score=19.15 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=20.9
Q ss_pred hhhh-HHHHhcCce----EEEcceeeeeccC
Q psy11172 10 HKPI-VSLVKSGQL----EIVTGGWVMTDEA 35 (75)
Q Consensus 10 ~k~~-k~lV~~Gql----E~v~GgWv~~Dea 35 (75)
.+.. ++++++|++ .-+|+-|.-..+|
T Consensus 17 s~~Tl~r~ar~G~I~Pp~~KvGr~wrv~~~a 47 (52)
T 2og0_A 17 SLETVRRWVRESRIFPPPVKDGREYLFHESA 47 (52)
T ss_dssp CHHHHHHHHHTTCEESCCEEETTEEEEETTC
T ss_pred CHHHHHHHHHCCCCCCcccccCCEEEEcccc
Confidence 3445 999999999 7899999876655
No 38
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=41.84 E-value=18 Score=21.65 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=33.8
Q ss_pred hhh-HHHHhcCceEEEcceeeeeccCCCCHHHHHHHHHHHH
Q psy11172 11 KPI-VSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQ 50 (75)
Q Consensus 11 k~~-k~lV~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~ 50 (75)
++. +.|++.|.+.-+..+.+.+-++......++.++..-+
T Consensus 38 ~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 78 (121)
T 2pjp_A 38 RLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQEC 78 (121)
T ss_dssp HHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHHC
Confidence 456 8999999999999999999888888888888876544
No 39
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=39.63 E-value=9.2 Score=22.79 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=21.1
Q ss_pred CCCCCCChhhh-HHHHhcCceEEEcceeee
Q psy11172 3 WSGEIPNHKPI-VSLVKSGQLEIVTGGWVM 31 (75)
Q Consensus 3 w~~~~~~~k~~-k~lV~~GqlE~v~GgWv~ 31 (75)
|...-+..+.. .+|+++|+++|.=+|=+-
T Consensus 39 Wr~lM~~vR~~A~~La~~G~v~I~qkG~pV 68 (85)
T 2ns0_A 39 WRPLMEPVREAAGRLADAGEVEVTQKGAVV 68 (85)
T ss_dssp CGGGHHHHHHHHHHHHHTTSEEEEETTEEC
T ss_pred HHHHhHHHHHHHHHHHHCCcEEEEECCEEc
Confidence 33334455677 899999999998877654
No 40
>3oms_A PHNB protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, methyltransferase, GL family; 1.90A {Bacillus cereus} SCOP: d.32.1.0
Probab=39.44 E-value=7.6 Score=23.93 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=10.8
Q ss_pred CceeecCCCCCC
Q psy11172 62 RYLHNNSRTISS 73 (75)
Q Consensus 62 ~~~W~~D~Fg~s 73 (75)
+.+|..||||++
T Consensus 120 ~~~~~~Dp~G~~ 131 (138)
T 3oms_A 120 KFGWLNDKYGVS 131 (138)
T ss_dssp EEEEEECTTSCE
T ss_pred EEEEEECCCCCE
Confidence 789999999985
No 41
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura genomics, JCSG, protein structure initiative, PSI, joint CE structural genomics; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=39.29 E-value=30 Score=24.76 Aligned_cols=40 Identities=10% Similarity=-0.016 Sum_probs=31.2
Q ss_pred eeeeccC---CCCHHHHHHHHHHHHHHHHhhhCCCCCceeecC
Q psy11172 29 WVMTDEA---NSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNS 68 (75)
Q Consensus 29 Wv~~Dea---~~~~~~~i~Q~~~G~~fl~~~fg~~P~~~W~~D 68 (75)
.+..|.. .|+-+.+++-...+..+++.-||+.||++=...
T Consensus 174 ~~~tD~~vn~~pt~e~l~~ia~~a~~~a~~~~Gi~PrVAlLs~ 216 (355)
T 1vmi_A 174 LGFADCSVVPQPTAAQLADIALASAETWRAITGEEPRVAMLSF 216 (355)
T ss_dssp EEEESSSSCSSCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECS
T ss_pred EEEeCCCcCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 5566655 455788888899999999984599999988653
No 42
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=37.05 E-value=37 Score=24.51 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhhCC-CCCcee
Q psy11172 37 SHYYSMIQQLTHGQQWLLTNIGV-KPRYLH 65 (75)
Q Consensus 37 ~~~~~~i~Q~~~G~~fl~~~fg~-~P~~~W 65 (75)
++-+.+++-+..-++-|++.||+ +||++=
T Consensus 180 it~e~i~~~i~~~~~~l~~~fGi~~PrIAV 209 (334)
T 3lxy_A 180 ITQASLHEVITILDNDLKTKFGITQPQIYV 209 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCCSSCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 35677788888889999999998 899863
No 43
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase; 2.10A {Thermus thermophilus HB27} SCOP: d.92.1.0 PDB: 1wgz_A
Probab=33.98 E-value=17 Score=27.89 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=20.9
Q ss_pred HHHHHhhhCCCCC---------ceeecCCCCCCC
Q psy11172 50 QQWLLTNIGVKPR---------YLHNNSRTISSP 74 (75)
Q Consensus 50 ~~fl~~~fg~~P~---------~~W~~D~Fg~s~ 74 (75)
.+-.++.||++|+ +.|+.-.|||.|
T Consensus 395 n~km~eyLGi~p~~d~~G~LQDiHWs~G~fGYFP 428 (509)
T 3hoa_A 395 AEKYRDHLGVAPKDYKDGVMQDVHWAGGLFGYFP 428 (509)
T ss_dssp HHHHHHHHSCCCSSSTTTTTSCSTTTTTCCSCTH
T ss_pred HHHHHHhcCCCCCCCCCCccccccccCCCcccch
Confidence 4556788999997 689999999987
No 44
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypept carboxypeptidase, hydrolase; 2.10A {Trypanosoma cruzi}
Probab=30.94 E-value=20 Score=27.46 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=31.4
Q ss_pred eeeccCCCCHHHHH-----HHHHHH-----------HHHHHhhhCCCCC----------ceeecCCCCCCC
Q psy11172 30 VMTDEANSHYYSMI-----QQLTHG-----------QQWLLTNIGVKPR----------YLHNNSRTISSP 74 (75)
Q Consensus 30 v~~Dea~~~~~~~i-----~Q~~~G-----------~~fl~~~fg~~P~----------~~W~~D~Fg~s~ 74 (75)
|+.||-+=+..=|| ..|..| .+-.++.||++|+ +.|+--.|||.|
T Consensus 351 veADEvTY~lHIilRyEiEk~Li~G~l~v~DLP~~Wn~km~eyLGi~p~~nd~~G~LQDiHWs~G~fGYFP 421 (505)
T 3dwc_A 351 IDADELCYPLHVMLRYEIERDLMDGNIEAEEVPRVWNEKMKSYLGLETLGNDKEGCLQDVHWSGGMFGYFP 421 (505)
T ss_dssp GGCCTTTHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHSCCCTTCCTTTTTSCSTTTTTCCSCTH
T ss_pred eehhhhhhhhHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHhcCCCCCCCCCCCccccccccCCCCccch
Confidence 55666665554444 344444 4567888999998 479999999987
No 45
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=29.28 E-value=14 Score=21.82 Aligned_cols=12 Identities=25% Similarity=0.119 Sum_probs=10.6
Q ss_pred CceeecCCCCCC
Q psy11172 62 RYLHNNSRTISS 73 (75)
Q Consensus 62 ~~~W~~D~Fg~s 73 (75)
+.+|..|||||.
T Consensus 117 ~~~~~~Dp~G~~ 128 (136)
T 1u7i_A 117 RFAWLADRFGVS 128 (136)
T ss_dssp EEEEEECTTSCE
T ss_pred eEEEEECCCCCE
Confidence 779999999984
No 46
>1jmx_G Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.137.9.1 PDB: 1jmz_G*
Probab=28.65 E-value=14 Score=21.63 Aligned_cols=12 Identities=0% Similarity=-0.476 Sum_probs=9.7
Q ss_pred CceeecCCCCCC
Q psy11172 62 RYLHNNSRTISS 73 (75)
Q Consensus 62 ~~~W~~D~Fg~s 73 (75)
.-||-+|+||--
T Consensus 12 dPGWEvDafGgv 23 (79)
T 1jmx_G 12 DPGWEVDAFGGV 23 (79)
T ss_dssp SSCSSSCTTSSS
T ss_pred CCCceecCCccH
Confidence 458999999964
No 47
>1smp_I Erwinia chrysanthemi inhibitor; complex (metalloprotease/inhibitor); 2.30A {Erwinia chrysanthemi} SCOP: b.61.2.1
Probab=28.52 E-value=26 Score=21.28 Aligned_cols=19 Identities=5% Similarity=-0.200 Sum_probs=14.5
Q ss_pred HHhhhCCCCCceeecCCCCC
Q psy11172 53 LLTNIGVKPRYLHNNSRTIS 72 (75)
Q Consensus 53 l~~~fg~~P~~~W~~D~Fg~ 72 (75)
+.+-+| .+.++|.++|+|-
T Consensus 47 l~~~l~-~~p~~W~ptPDGi 65 (101)
T 1smp_I 47 LQKLLP-EAPVGWRPTPDGL 65 (101)
T ss_dssp HHHHSS-SCCCEEEECSSEE
T ss_pred HHHHhc-CCCcccccCCCEE
Confidence 345566 7778999999984
No 48
>1pby_C Quinohemoprotein amine dehydrogenase 9 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.137.9.1 PDB: 1jju_C*
Probab=28.52 E-value=14 Score=21.63 Aligned_cols=12 Identities=0% Similarity=-0.457 Sum_probs=9.7
Q ss_pred CceeecCCCCCC
Q psy11172 62 RYLHNNSRTISS 73 (75)
Q Consensus 62 ~~~W~~D~Fg~s 73 (75)
.-||-+|+||--
T Consensus 12 dPGWEvDafGgv 23 (79)
T 1pby_C 12 DPGWEVDAFGAV 23 (79)
T ss_dssp SSBSSSBTTSSS
T ss_pred CCCceecCCccH
Confidence 458999999964
No 49
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}
Probab=28.23 E-value=28 Score=21.61 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=26.3
Q ss_pred HhcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172 17 VKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY 63 (75)
Q Consensus 17 V~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~ 63 (75)
...|.|++. ||.|+++| +.-++.++. ++++.|+.+..
T Consensus 64 ~~~g~w~lP-GG~ve~gE--s~~~aa~RE-------l~EEtGl~~~~ 100 (187)
T 3i9x_A 64 MEGGKWAVP-GGFVDENE--SAEQAAERE-------LEEETSLTDIP 100 (187)
T ss_dssp TTTTCEECS-EEECCTTS--CHHHHHHHH-------HHHHHCCCSCC
T ss_pred CCCCEEECC-ceeCCCCC--CHHHHHHHH-------HHHHHCCCCcc
Confidence 457889987 78899888 445555555 57888876554
No 50
>3l20_A Putative uncharacterized protein; hypothetical protein, unknown function; 2.45A {Staphylococcus aureus}
Probab=28.16 E-value=16 Score=23.68 Aligned_cols=13 Identities=0% Similarity=-0.317 Sum_probs=11.2
Q ss_pred CCceeecCCCCCC
Q psy11172 61 PRYLHNNSRTISS 73 (75)
Q Consensus 61 P~~~W~~D~Fg~s 73 (75)
.+.+|..||||++
T Consensus 147 ~r~g~v~DpfG~~ 159 (172)
T 3l20_A 147 GKMGVFTDKYGVR 159 (172)
T ss_dssp SEEEEEECTTSCE
T ss_pred cEEEEEECCCCCE
Confidence 4789999999985
No 51
>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A
Probab=28.13 E-value=91 Score=21.21 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=29.7
Q ss_pred eEEEcceeeeecc---CCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172 22 LEIVTGGWVMTDE---ANSHYYSMIQQLTHGQQWLLTNIGVKPR 62 (75)
Q Consensus 22 lE~v~GgWv~~De---a~~~~~~~i~Q~~~G~~fl~~~fg~~P~ 62 (75)
+|++|-|....+. -.+.-++.++.+..-.+.|.+++++.|.
T Consensus 103 IE~~n~G~~~~~g~~~~~~~t~aQ~~al~~L~~~L~~~y~i~~~ 146 (261)
T 3d2y_A 103 IELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPE 146 (261)
T ss_dssp EEECCCCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred EEEecCCCccccCCcCCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 6888755543322 2345578999999999999999998653
No 52
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=27.96 E-value=55 Score=16.75 Aligned_cols=15 Identities=13% Similarity=0.572 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhh
Q psy11172 43 IQQLTHGQQWLLTNI 57 (75)
Q Consensus 43 i~Q~~~G~~fl~~~f 57 (75)
+.-...|.+|++..|
T Consensus 29 laavvlgirwikaqf 43 (44)
T 1ifp_A 29 LAAVVLGIRWIKAQF 43 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhHhhc
Confidence 345678999999876
No 53
>3ayx_A Membrane-bound hydrogenase large subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_A 3ayz_A 3rgw_L
Probab=26.66 E-value=7.9 Score=29.97 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=31.1
Q ss_pred hhhh-HHHHhcCceEEEcceee-eeccCC---------CCHHHHHHHHHHHHHHHHhhhC-CCCC
Q psy11172 10 HKPI-VSLVKSGQLEIVTGGWV-MTDEAN---------SHYYSMIQQLTHGQQWLLTNIG-VKPR 62 (75)
Q Consensus 10 ~k~~-k~lV~~GqlE~v~GgWv-~~Dea~---------~~~~~~i~Q~~~G~~fl~~~fg-~~P~ 62 (75)
.+++ |++|++||+.+..+++- .++-.. .||...++-=..+++.+ ..|| ..|.
T Consensus 167 v~~~~~~~v~~g~lg~f~~~~wg~p~~~~~pe~~~~~~~hy~~al~~r~~~~~i~-ai~GGr~pH 230 (596)
T 3ayx_A 167 IQIRIQKFVDSGQLGIFKNGYWSNPAYKLSPEADLMAVTHYLEALDFQKEIVKIH-AIFGGKNPH 230 (596)
T ss_dssp HHHHHHHHHHTTCCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHH-HHHHSCSSS
T ss_pred HHHHHHHHHhccccccccccccCCccccCChhhhhHHHHHHHHHHHHHHHHHHHH-HHHCCCCcc
Confidence 3567 89999999999887763 333333 34444444444555555 6776 3444
No 54
>2ac1_A Invertase; five fold beta propeller, hydrolase; HET: NAG MAN; 2.15A {Arabidopsis thaliana} PDB: 2xqr_A* 2oxb_A* 2qqw_A* 2qqv_A* 2qqu_A*
Probab=26.44 E-value=12 Score=28.23 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=15.4
Q ss_pred HhhhCCCCCceeecCCCCC
Q psy11172 54 LTNIGVKPRYLHNNSRTIS 72 (75)
Q Consensus 54 ~~~fg~~P~~~W~~D~Fg~ 72 (75)
+-.|.+.|..+|.+||-|.
T Consensus 9 Rp~~H~~p~~gw~NDPnG~ 27 (541)
T 2ac1_A 9 RTGFHFQPPKNWMNDPNGP 27 (541)
T ss_dssp SCSSSCCCSSEEEEEEEEE
T ss_pred ccceeecCccCCeeCCCcc
Confidence 3457789999999999763
No 55
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=26.27 E-value=28 Score=21.19 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=22.8
Q ss_pred cCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCC
Q psy11172 19 SGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61 (75)
Q Consensus 19 ~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P 61 (75)
.|.++|.-||.|+++|. ..++.++. ++++.|+.+
T Consensus 64 ~g~w~l~pGG~ve~gE~--~~~aa~RE-------l~EEtGl~~ 97 (180)
T 2fkb_A 64 PGMLDATAGGVVQADEQ--LLESARRE-------AEEELGIAG 97 (180)
T ss_dssp TTCEESSBCCBCBTTCC--HHHHHHHH-------HHHHHCCBS
T ss_pred CCcEEeecCCCCCCCCC--HHHHHHHH-------HHHHHCCCc
Confidence 57799866778888873 44555554 467777644
No 56
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=26.26 E-value=95 Score=17.71 Aligned_cols=26 Identities=8% Similarity=0.077 Sum_probs=21.6
Q ss_pred hhh-HHHHhcCceEEEcceeeeeccCC
Q psy11172 11 KPI-VSLVKSGQLEIVTGGWVMTDEAN 36 (75)
Q Consensus 11 k~~-k~lV~~GqlE~v~GgWv~~Dea~ 36 (75)
+.. ..|++.|=++...|+++-++...
T Consensus 38 ~~~l~~L~~~GLI~~~~~~~~LT~kG~ 64 (95)
T 1r7j_A 38 GRYIKMLMDLEIIRQEGKQYMLTKKGE 64 (95)
T ss_dssp HHHHHHHHHTTSEEEETTEEEECHHHH
T ss_pred HHHHHHHHHCCCeEEECCeeEEChhHH
Confidence 444 89999999999999988877654
No 57
>2ws9_2 P1; 3.00A {Equine rhinitis a virus} PDB: 2xbo_2* 2wff_2
Probab=25.77 E-value=14 Score=25.34 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHh
Q psy11172 33 DEANSHYYSMIQQLTHGQQWLLT 55 (75)
Q Consensus 33 Dea~~~~~~~i~Q~~~G~~fl~~ 55 (75)
-|+|+.|+|.|.|++.|.-=+..
T Consensus 4 ~Ee~~~~sDRV~~~t~GNstitT 26 (230)
T 2ws9_2 4 TEETTNIEDRIETTVVGATIINS 26 (230)
T ss_dssp -----------------------
T ss_pred cccccCccceeEEEeeccccccc
Confidence 48899999999999999765543
No 58
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}
Probab=25.55 E-value=37 Score=20.45 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=23.5
Q ss_pred cCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCCc
Q psy11172 19 SGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRY 63 (75)
Q Consensus 19 ~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~~ 63 (75)
.|.|+|. ||.|+++| +.-++.++. ++++.|+.++.
T Consensus 45 ~~~w~~P-gG~ve~gE--s~~~aa~RE-------l~EEtGl~~~~ 79 (171)
T 3id9_A 45 NRDWSLP-GGRVENGE--TLEEAMIRE-------MREETGLEVKI 79 (171)
T ss_dssp TCCEECC-EEECCTTC--CHHHHHHHH-------HHHHHCCCEEE
T ss_pred CCeEECC-CccCCCCC--CHHHHHHHH-------HHHHHCCcccc
Confidence 7889887 66678777 444554444 57888876543
No 59
>1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A* 2aey_A* 2aez_A*
Probab=25.33 E-value=13 Score=28.10 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=14.9
Q ss_pred hhhCCCCCceeecCCCCC
Q psy11172 55 TNIGVKPRYLHNNSRTIS 72 (75)
Q Consensus 55 ~~fg~~P~~~W~~D~Fg~ 72 (75)
-.|.+.|..+|.+||-|.
T Consensus 9 p~~H~~p~~gw~NDPnG~ 26 (543)
T 1st8_A 9 TGYHFQPPSNWMNDPNGP 26 (543)
T ss_dssp CSSSCCCSSEEEEEEEEE
T ss_pred ccccccCCcCCeECCccc
Confidence 457789999999999763
No 60
>1u6l_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.81A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=25.29 E-value=18 Score=21.82 Aligned_cols=12 Identities=8% Similarity=-0.130 Sum_probs=10.6
Q ss_pred CceeecCCCCCC
Q psy11172 62 RYLHNNSRTISS 73 (75)
Q Consensus 62 ~~~W~~D~Fg~s 73 (75)
+.+|..||||+.
T Consensus 119 r~~~v~Dp~G~~ 130 (149)
T 1u6l_A 119 SFGMFTDRFGVA 130 (149)
T ss_dssp EEEEEECTTSCE
T ss_pred ceEEEECCCCCE
Confidence 679999999984
No 61
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=24.81 E-value=39 Score=21.49 Aligned_cols=34 Identities=15% Similarity=0.376 Sum_probs=22.2
Q ss_pred hcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCC
Q psy11172 18 KSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61 (75)
Q Consensus 18 ~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P 61 (75)
..|.++| -||+|+++| +.-++.++.+ +++.|+.+
T Consensus 88 ~~g~w~l-PgG~ve~gE--s~~~aa~REl-------~EEtGl~v 121 (205)
T 3q1p_A 88 SDGKWAL-PGGWADVGY--TPTEVAAKEV-------FEETGYEV 121 (205)
T ss_dssp --CCEEC-SEEECCTTC--CHHHHHHHHH-------HHHHSEEE
T ss_pred CCCcEEC-CcCccCCCC--CHHHHHHHHH-------HHHHCCcc
Confidence 4788988 578999888 4556666554 66666543
No 62
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=23.80 E-value=57 Score=18.86 Aligned_cols=17 Identities=24% Similarity=0.175 Sum_probs=14.2
Q ss_pred hhh-HHHHhcCceEEEcc
Q psy11172 11 KPI-VSLVKSGQLEIVTG 27 (75)
Q Consensus 11 k~~-k~lV~~GqlE~v~G 27 (75)
... +-|++.|+.+++.+
T Consensus 53 ~kaL~~L~k~gkA~i~~~ 70 (79)
T 3htu_A 53 LRALQALQQEHKAEIITV 70 (79)
T ss_dssp HHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHcCCEEEEec
Confidence 344 99999999999974
No 63
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc; 2.90A {Bacillus subtilis} SCOP: d.92.1.0
Probab=23.66 E-value=32 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=31.0
Q ss_pred eeeccCCCCHHHHH-----HHHHHH-----------HHHHHhhhCCCCC---------ceeecCCCCCCC
Q psy11172 30 VMTDEANSHYYSMI-----QQLTHG-----------QQWLLTNIGVKPR---------YLHNNSRTISSP 74 (75)
Q Consensus 30 v~~Dea~~~~~~~i-----~Q~~~G-----------~~fl~~~fg~~P~---------~~W~~D~Fg~s~ 74 (75)
|+.||-+=+-.=|| ..|..| .+-.++.||++|+ +.|+.-.|||.|
T Consensus 349 veADElTY~lHIilRyEiEk~li~g~l~v~dLp~~Wn~~~~~ylGv~p~~d~~G~LQDiHWs~G~fGYFP 418 (501)
T 3hq2_A 349 VEADELTYPLHIIIRYEIEKAIFSNEVSVEDLPSLWNQKYQDYLGITPQTDAEGILQDVHWAGGDFGYFP 418 (501)
T ss_dssp GGCCTTTHHHHHHHHHHHHHHHHTTCSCGGGHHHHHHHHHHHHHSCCCSSTTTTTTSCSTTTTTCTTCTH
T ss_pred ehhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCCCCcccccccccccCCCccchH
Confidence 55666665554444 344444 4556788999998 689999999976
No 64
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=23.51 E-value=67 Score=18.11 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=21.0
Q ss_pred hhh-HHHHhcCce----EEEcceeeeeccCC
Q psy11172 11 KPI-VSLVKSGQL----EIVTGGWVMTDEAN 36 (75)
Q Consensus 11 k~~-k~lV~~Gql----E~v~GgWv~~Dea~ 36 (75)
+.. ++++++|++ .-+|+-|.-..+|.
T Consensus 18 ~~Tl~r~ar~G~I~Pp~~KvGr~Wrv~~~a~ 48 (72)
T 1pm6_A 18 LETVRRWVRESRIFPPPVKDGREYLFHESAV 48 (72)
T ss_dssp HHHHHHHHHHTCEESCCEECSSSEEEETTCE
T ss_pred HHHHHHHHHCCCCCCchhhcCCEEEECchhe
Confidence 445 999999999 78999998776653
No 65
>3ugf_A Sucrose:(sucrose/fructan) 6-fructosyltransferase; glycoside hydrolase family 32; HET: NAG FUC BMA MAN; 1.70A {Pachysandra terminalis} PDB: 3ugg_A* 3ugh_A*
Probab=23.01 E-value=19 Score=27.57 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=19.1
Q ss_pred HHHHHHhhhCCCCCceeecCCCC
Q psy11172 49 GQQWLLTNIGVKPRYLHNNSRTI 71 (75)
Q Consensus 49 G~~fl~~~fg~~P~~~W~~D~Fg 71 (75)
..+|-+-.|.+.|..||.+||=|
T Consensus 14 ~~~~~Rp~yH~~P~~gwmNDPNG 36 (546)
T 3ugf_A 14 QLSWQRTAFHFQPERSWMSDPDG 36 (546)
T ss_dssp HHHHTSCSSSCCCSSEEEEEEEE
T ss_pred hhhhcCCeEEEeCCCCCccCCce
Confidence 45666788899999999999865
No 66
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}
Probab=22.68 E-value=42 Score=19.77 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=22.7
Q ss_pred cCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172 19 SGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62 (75)
Q Consensus 19 ~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~ 62 (75)
.|.++|. ||-|+++| +.-++.++. ++++.|+.+.
T Consensus 45 ~~~w~~P-gG~ve~gE--~~~~aa~RE-------l~EEtGl~~~ 78 (156)
T 3gg6_A 45 RGSWYLP-AGRMEPGE--TIVEALQRE-------VKEEAGLHCE 78 (156)
T ss_dssp TTCEECS-EEECCTTC--CHHHHHHHH-------HHHHHCEEEE
T ss_pred CCEEECC-eeeccCCC--CHHHHHHHH-------HHHhhCceeE
Confidence 6889976 67788887 345555555 4677776443
No 67
>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*
Probab=22.22 E-value=49 Score=19.50 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=23.0
Q ss_pred hcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCC
Q psy11172 18 KSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKP 61 (75)
Q Consensus 18 ~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P 61 (75)
+.|.|+| -||.|+++| +..++.++.+ +++.|+.+
T Consensus 23 ~~g~W~~-PgG~ve~gE--t~~~aa~RE~-------~EEtGl~~ 56 (134)
T 3i7u_A 23 PSNVWSF-PKGNIEPGE--KPEETAVREV-------WEETGVKG 56 (134)
T ss_dssp TTSCEEC-CEEECCTTC--CHHHHHHHHH-------HHHHSEEE
T ss_pred CCCcEEC-CeeEecCCC--CHHHHHHHHH-------HHhcCceE
Confidence 3578887 477788888 4567777765 55566544
No 68
>1y4w_A EXO-inulinase; glycoside hydrolase FAMI crystallographic structure, native structure, hydrolase; HET: NAG; 1.55A {Aspergillus awamori} SCOP: b.29.1.19 b.67.2.3 PDB: 1y9g_A* 1y9m_A*
Probab=21.89 E-value=17 Score=27.14 Aligned_cols=18 Identities=11% Similarity=-0.071 Sum_probs=14.7
Q ss_pred hhhCCCCCceeecCCCCC
Q psy11172 55 TNIGVKPRYLHNNSRTIS 72 (75)
Q Consensus 55 ~~fg~~P~~~W~~D~Fg~ 72 (75)
-.|.+.|..+|.+||=|.
T Consensus 9 p~~H~~P~~gw~NDPnG~ 26 (518)
T 1y4w_A 9 GQYHFSPQKNWMNDPNGL 26 (518)
T ss_dssp CSSSCCCSSEEEEEEEEE
T ss_pred ccEeeeCCcCceECCCcc
Confidence 356789999999999763
No 69
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}
Probab=21.42 E-value=37 Score=21.35 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=23.6
Q ss_pred cCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172 19 SGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62 (75)
Q Consensus 19 ~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~ 62 (75)
.|+|+|- ||.|+++| +.-++.++. ++++.|+.+.
T Consensus 51 ~g~w~lP-GG~ve~gE--s~~~aA~RE-------l~EEtGl~~~ 84 (199)
T 3h95_A 51 KNMWKFP-GGLSEPEE--DIGDTAVRE-------VFEETGIKSE 84 (199)
T ss_dssp TTSBBCC-EEECCTTC--CHHHHHHHH-------HHHHHCCCEE
T ss_pred CCCEECC-ccccCCCC--CHHHHHHHH-------HHHHhCCccc
Confidence 5889887 77888888 345555555 4777787654
No 70
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}
Probab=21.35 E-value=44 Score=20.91 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=23.3
Q ss_pred hcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCC
Q psy11172 18 KSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVK 60 (75)
Q Consensus 18 ~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~ 60 (75)
..|.|+|- ||.|+++| +.-++.++.+ +++.|+.
T Consensus 67 ~~g~w~lP-gG~ve~gE--s~~eaa~REl-------~EEtGl~ 99 (197)
T 3fcm_A 67 IYNSWAWT-GGHSDNEK--DQLKVAIKEL-------KEETGVK 99 (197)
T ss_dssp TTTEEECE-EEECTTCC--BHHHHHHHHH-------HHHHCCS
T ss_pred CCCCEECC-ccccCCCC--CHHHHHHHHH-------HHHHCCC
Confidence 56889887 78888877 3456666654 6777765
No 71
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*
Probab=21.26 E-value=48 Score=19.41 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=22.7
Q ss_pred hcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172 18 KSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62 (75)
Q Consensus 18 ~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~ 62 (75)
..|.++|. ||-++++| +..++.++. +.++.|+.+.
T Consensus 41 ~~~~w~~P-gG~ve~gE--~~~~aa~RE-------~~EEtGl~~~ 75 (159)
T 1sjy_A 41 KAGLWHIP-SGAVEDGE--NPQDAAVRE-------ACEETGLRVR 75 (159)
T ss_dssp CCCCEECS-EEECCTTS--CHHHHHHHH-------HHHHHSCCEE
T ss_pred CCCeEECC-ccccCCCC--CHHHHHHHH-------HHHHHCccce
Confidence 55899986 67788887 344555544 4667776543
No 72
>3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase; 1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A* 3ldr_A 3lih_A* 3lf7_A 3lfi_A*
Probab=20.81 E-value=25 Score=27.40 Aligned_cols=19 Identities=5% Similarity=-0.106 Sum_probs=15.4
Q ss_pred HhhhCCCCCceeecCCCCC
Q psy11172 54 LTNIGVKPRYLHNNSRTIS 72 (75)
Q Consensus 54 ~~~fg~~P~~~W~~D~Fg~ 72 (75)
+-.|.+.|..||.+||=|.
T Consensus 27 Rp~~H~~p~~gwmNDPnG~ 45 (634)
T 3lig_A 27 RPRAHILPAEGQIGDPCAH 45 (634)
T ss_dssp CCSSSCCCSSEEEEEECCC
T ss_pred CccEeEcCCCCcccCCccc
Confidence 3457789999999999774
No 73
>3sc7_X Inulinase; glycoside hydrolase family 32, glycosylation cytosol, hydrolase; HET: MAN NAG EPE; 1.50A {Aspergillus ficuum} PDB: 3rwk_X*
Probab=20.77 E-value=25 Score=26.55 Aligned_cols=18 Identities=11% Similarity=-0.023 Sum_probs=14.8
Q ss_pred HhhhCCCCCceeecCCCC
Q psy11172 54 LTNIGVKPRYLHNNSRTI 71 (75)
Q Consensus 54 ~~~fg~~P~~~W~~D~Fg 71 (75)
+-.|.+.|..+|.+||=|
T Consensus 29 Rp~yH~~P~~gwmNDPNG 46 (516)
T 3sc7_X 29 RPSYHFTPDQYWMNEPNG 46 (516)
T ss_dssp CCSSSCCCSSEEEEEEEE
T ss_pred cccEeecCCcCCcCCCee
Confidence 445778999999999966
No 74
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}
Probab=20.74 E-value=51 Score=20.64 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=23.8
Q ss_pred hcCceEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHhhhCCCCC
Q psy11172 18 KSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62 (75)
Q Consensus 18 ~~GqlE~v~GgWv~~Dea~~~~~~~i~Q~~~G~~fl~~~fg~~P~ 62 (75)
..|.+++. ||-|+++| +.-++.++. |+++.|+.+.
T Consensus 24 ~~g~W~lP-GG~ve~gE--s~~~aa~RE-------l~EEtGl~~~ 58 (188)
T 3fk9_A 24 RRGWWVAP-GGKMEAGE--SILETVKRE-------YWEETGITVK 58 (188)
T ss_dssp TTCCEECC-EEECCTTC--CHHHHHHHH-------HHHHHSCEES
T ss_pred CCCeEECC-eecccCCC--CHHHHHHHH-------HHHHHCCCCC
Confidence 47889887 67788888 345555554 4677886544
No 75
>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=20.05 E-value=25 Score=26.56 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=31.2
Q ss_pred hhhh-HHHHhcCceEEEcceee---eeccCCC---------CHHHHHHHHHHHHHHHHhhhCCCCCce
Q psy11172 10 HKPI-VSLVKSGQLEIVTGGWV---MTDEANS---------HYYSMIQQLTHGQQWLLTNIGVKPRYL 64 (75)
Q Consensus 10 ~k~~-k~lV~~GqlE~v~GgWv---~~Dea~~---------~~~~~i~Q~~~G~~fl~~~fg~~P~~~ 64 (75)
.+++ |++|++||+.+..+++- .++...+ +|...++-=..+++.+.---|.+|...
T Consensus 152 vq~~~~~~v~~g~l~~f~~~~~~~~~~~~~l~p~~~~~~~~~~~~al~~r~~~~~i~~~~gGk~~H~~ 219 (534)
T 1wui_L 152 VQDKLKTFVETGQLGPFTNAYFLGGHPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQ 219 (534)
T ss_dssp HHHHHHHHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCC
T ss_pred HHHHHHhhhhccccCcccccccccCChhhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC
Confidence 3667 99999999975554442 3333322 344444444455555544446677643
Done!