RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11172
(75 letters)
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase,
golgi apparatus, membrane, signal-anchor, transmembrane;
HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1
b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A*
3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A*
1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A*
2alw_A* 2f18_A* ...
Length = 1045
Score = 64.9 bits (157), Expect = 2e-14
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 13 IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYL 64
+ S+VK+GQLE VTGGWVM DEANSH+ +++ QLT GQ WL + V P
Sbjct: 149 MKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTAS 200
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
c.6.2.1
Length = 298
Score = 59.6 bits (144), Expect = 1e-12
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 11 KPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
K + LV+ G+LE GGWVM DEA +HY ++I Q+T G ++L G R
Sbjct: 88 KIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGR 139
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase;
1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Length = 923
Score = 51.4 bits (122), Expect = 1e-09
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 13 IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
I + SG+L I +++ D+ + S ++ + G++ G
Sbjct: 94 IRQAIASGKLRI-GPFYILQDDFLTSSESNVRNMLIGKED-CDRWGASVP 141
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.55A {Enterococcus faecalis}
Length = 899
Score = 46.0 bits (108), Expect = 1e-07
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 13 IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
+ V++G+L+I +++ D+ S ++ + G G +
Sbjct: 75 VKKAVQAGKLKI-GPFYILQDDFLISSESNVRNMLIG-HLESQKWGAPVQ 122
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP:
a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Length = 659
Score = 32.7 bits (74), Expect = 0.006
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 13 IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
+ SL+K GQLEIV G+ A + Q+ + + +G +
Sbjct: 69 LRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDY-ARKLGYDAK 117
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB:
2e5t_A 2e5u_A
Length = 133
Score = 31.9 bits (73), Expect = 0.007
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 4 SGEI---PNHKPIVSLVKSGQLEIVTGG 28
SGE+ P H P+V+ ++ + GG
Sbjct: 29 SGELGILPGHIPLVAPLEISAARLKKGG 56
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon
subunit, ATP synthesis, CF1, hydrogen ION transport,
hydrolase; NMR {Thermosynechococcus elongatus} PDB:
2rq7_A
Length = 138
Score = 31.2 bits (71), Expect = 0.014
Identities = 5/28 (17%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 4 SGEI---PNHKPIVSLVKSGQLEIVTGG 28
+G++ NH P+++ +++G + +
Sbjct: 28 TGQLGILSNHAPLLTALETGVMRVRQDR 55
>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis,
F1-ATPase, single analysis, thermoalkaliphilic,
hydrolase; 3.06A {Bacillus SP}
Length = 135
Score = 30.4 bits (69), Expect = 0.023
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 4 SGEI---PNHKPIVSLVKSGQLEIVTGG 28
GE+ H P+V+ +K+ + I G
Sbjct: 29 EGELGVMAGHIPLVTPLKTAPVRIKQGD 56
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A
{Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J
1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Length = 138
Score = 30.0 bits (68), Expect = 0.028
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 4 SGEI---PNHKPIVSLVKSGQLEIVTGG 28
GE+ P H P+++ +K G + IV
Sbjct: 29 EGELGIYPGHAPLLTAIKPGMIRIVKQH 56
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr
inner membrane, transmembrane; HET: ANP; 3.01A
{Saccharomyces cerevisiae}
Length = 160
Score = 29.8 bits (67), Expect = 0.045
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 4 SGEI---PNHKPIVSLVKSGQLEIVTGG 28
SG I NH P V + G +E++ G
Sbjct: 58 SGRIGVLANHVPTVEQLLPGVVEVMEGS 85
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP
synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A
{Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H*
3oeh_H* 3ofn_H* 3zry_H* 3oe7_H*
Length = 138
Score = 29.3 bits (66), Expect = 0.058
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 4 SGEI---PNHKPIVSLVKSGQLEIVTGG 28
SG I NH P V + G +E++ G
Sbjct: 36 SGRIGVLANHVPTVEQLLPGVVEVMEGS 63
>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting),
transit peptide, F1FO ATP synthase, ATP phosphorylase;
3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H
Length = 168
Score = 29.2 bits (65), Expect = 0.083
Identities = 4/28 (14%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 4 SGEI---PNHKPIVSLVKSGQLEIVTGG 28
+G H P + +++ G + +
Sbjct: 64 TGAFGILAAHVPTLQVLRPGLVVVHAED 91
>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB:
1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*
Length = 146
Score = 28.0 bits (62), Expect = 0.18
Identities = 4/28 (14%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 4 SGEI---PNHKPIVSLVKSGQLEIVTGG 28
+G H P + +++ G + +
Sbjct: 42 TGAFGILAAHVPTLQVLRPGLVVVHAED 69
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 28.3 bits (64), Expect = 0.20
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 10 HKPIVSLVKSGQLEIVTGGWVMTDEA 35
H P + VK + + G+V +
Sbjct: 247 HVPNTAFVK-DTVSLRDDGYVDVRDE 271
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 27.5 bits (62), Expect = 0.37
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 10 HKPIVSLVKSGQLEIVTGGWVMTDE 34
P KS +E T G++ DE
Sbjct: 249 FDPPTDFAKSNGIETDTNGYIKVDE 273
>2ij9_A Uridylate kinase; structural genomics, protein structure
initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus}
SCOP: c.73.1.3
Length = 219
Score = 26.6 bits (59), Expect = 0.77
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 13 IVSLVKSGQLEIVTGG 28
I S+ + Q+ +V GG
Sbjct: 26 IESVAQQNQVFVVVGG 41
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 25.5 bits (55), Expect = 1.8
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 3 WSGEIPNHKPIVSLVKSGQLEIVTGGWVMTDEANSHYYSMI 43
WSG P + S V+ +I+ G V + Y +
Sbjct: 315 WSGPAPRCELSTSAVQCPHPQILRGRMVSGQKDRYTYNDTV 355
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 25.1 bits (56), Expect = 2.3
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 10 HKPIVSLVKSGQLEIVTGGWVMTDE 34
P + ++ G +E G ++ D
Sbjct: 240 LLPNTNWLE-GAVERNRMGEIIIDA 263
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 25.0 bits (55), Expect = 2.5
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 10 HKPIVSLVKSGQLEIVTGGWVMTDE 34
P ++ G LE G ++ D
Sbjct: 451 LLPNTHWLE-GALERNRMGEIIIDA 474
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 24.8 bits (55), Expect = 2.7
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 10 HKPIVSLVKSGQLEIVTGGWVMTDE 34
P S +K +++ G+++ D
Sbjct: 250 LIPQTSFLKDSGVKLDERGYIVVDS 274
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente
eukaryotic structural genomics, CESG, structural
genomics, function; HET: MSE; 1.92A {Danio rerio}
Length = 224
Score = 25.0 bits (54), Expect = 2.7
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 28 GWVMTDEANSHYYS 41
GW ++D A +YYS
Sbjct: 207 GWKLSDTAQKYYYS 220
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 24.8 bits (55), Expect = 3.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 54 LTNIGVKPRYLHNNSRTI 71
L IG+K YLH+ +T+
Sbjct: 465 LKEIGIKVNYLHSEIKTL 482
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 24.4 bits (54), Expect = 3.4
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 8 PNHKPIVSLVKSGQLEIVTGGWVMTDE 34
P ++ E+ + G + D+
Sbjct: 232 PTFFRPNQFIEQLGCELQSNGTFVIDD 258
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 4.1
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 6 EIPNHKPI-VSLVKSGQLEIVTG 27
+P K + +SLV + +V+G
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSG 381
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 24.5 bits (54), Expect = 4.3
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 54 LTNIGVKPRYLHNNSRTI 71
L G++ RYLH+
Sbjct: 459 LVEHGIRARYLHHELDAF 476
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.409
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,127,590
Number of extensions: 50520
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 25
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)