RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11172
         (75 letters)



>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 381

 Score = 58.1 bits (140), Expect = 2e-12
 Identities = 29/50 (58%), Positives = 37/50 (74%)

Query: 13  IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPR 62
           + S+VK+GQLE VTGGWVM DEANSH+ +++ QLT GQ WL   + V P 
Sbjct: 119 MKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPT 168


>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 330

 Score = 54.3 bits (130), Expect = 3e-11
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 13  IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGV 59
           +  LV+ G+LE   GGWVM DEA +HY ++I Q+T G ++L    G 
Sbjct: 89  VRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGS 135


>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
           domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 310

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 13  IVSLVKSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLTNIGVKPRYLHNNSRTIS 72
           + SL+K GQLEIV  G+     A       + Q+    +     +G   + +    R   
Sbjct: 69  LRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEML-KDYARKLGYDAKGVWLTERVWQ 127

Query: 73  S 73
            
Sbjct: 128 P 128


>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase
          N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 85

 Score = 25.5 bits (56), Expect = 0.43
 Identities = 4/28 (14%), Positives = 11/28 (39%), Gaps = 3/28 (10%)

Query: 4  SGEI---PNHKPIVSLVKSGQLEIVTGG 28
          +G       H P + +++ G + +    
Sbjct: 26 TGAFGILAAHVPTLQVLRPGLVVVHAED 53


>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens
          [TaxId: 34413]}
          Length = 210

 Score = 25.1 bits (55), Expect = 0.77
 Identities = 5/20 (25%), Positives = 11/20 (55%)

Query: 2  SWSGEIPNHKPIVSLVKSGQ 21
           W+ + P ++P+ S   + Q
Sbjct: 17 GWAKKAPVNQPVFSCNANFQ 36


>d2plca_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase
          C {Listeria monocytogenes [TaxId: 1639]}
          Length = 274

 Score = 25.2 bits (54), Expect = 0.90
 Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 5/78 (6%)

Query: 1  MSWSGEIPNHKPIVSLV-----KSGQLEIVTGGWVMTDEANSHYYSMIQQLTHGQQWLLT 55
            W   +P+   + +L       +          +    A +   S+ QQL  G +++  
Sbjct: 4  KQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYIDI 63

Query: 56 NIGVKPRYLHNNSRTISS 73
                   H      +S
Sbjct: 64 RAKDNLNIYHGPIFLNAS 81


>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase
          N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 85

 Score = 23.5 bits (51), Expect = 1.9
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 3/28 (10%)

Query: 4  SGEI---PNHKPIVSLVKSGQLEIVTGG 28
           GE+   P H P+++ +K G + IV   
Sbjct: 28 EGELGIYPGHAPLLTAIKPGMIRIVKQH 55


>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
           {Basidomycetos fungus (Phanerochaete chrysosporium)
           [TaxId: 5306]}
          Length = 357

 Score = 23.8 bits (51), Expect = 2.5
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 54  LTNIGVKPRYLHNNSRTISSP 74
           L  +G     L + S  +  P
Sbjct: 276 LAVLGHNRNSLIDCSDVVPVP 296


>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 397

 Score = 23.2 bits (48), Expect = 3.9
 Identities = 5/19 (26%), Positives = 8/19 (42%)

Query: 38  HYYSMIQQLTHGQQWLLTN 56
           HY + I+      +W   N
Sbjct: 345 HYQAFIRDELDENKWYKFN 363


>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
           carotovorum [TaxId: 554]}
          Length = 204

 Score = 22.6 bits (48), Expect = 7.2
 Identities = 8/84 (9%), Positives = 19/84 (22%), Gaps = 13/84 (15%)

Query: 1   MSWSGEIPNHKPIVSLVKSGQLEIVTGG-------------WVMTDEANSHYYSMIQQLT 47
               G + N   ++ L    + E                        A   +   I +  
Sbjct: 52  AYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRLGANALALAEGDFCFFIDEPN 111

Query: 48  HGQQWLLTNIGVKPRYLHNNSRTI 71
                +  + G  P ++    +  
Sbjct: 112 GELTVITESRGFSPVHVVQGKKAW 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.409 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 282,040
Number of extensions: 9845
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 13
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)