BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11173
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 142 bits (359), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
D + F +I+GG W QGWNI D + + + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 50 DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 108
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
IL + L +N + KFIWAE+SY + ++ + E+ K +++ +VK+GQLE VTGGWVM
Sbjct: 109 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 168
Query: 160 DEANS 164
DEANS
Sbjct: 169 DEANS 173
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 169 DNSGSTDVLTHMMPFY 184
DN G T + THMMPFY
Sbjct: 252 DNKGDTALFTHMMPFY 267
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 142 bits (358), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
D + F +I+GG W QGWNI D + + + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 50 DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 108
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
IL + L +N + KFIWAE+SY + ++ + E+ K +++ +VK+GQLE VTGGWVM
Sbjct: 109 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 168
Query: 160 DEANS 164
DEANS
Sbjct: 169 DEANS 173
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 169 DNSGSTDVLTHMMPFY 184
DN G T + THMMPFY
Sbjct: 252 DNKGDTALFTHMMPFY 267
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 142 bits (358), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
D + F +I+GG W QGWNI D + + + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 50 DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 108
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
IL + L +N + KFIWAE+SY + ++ + E+ K +++ +VK+GQLE VTGGWVM
Sbjct: 109 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 168
Query: 160 DEANS 164
DEANS
Sbjct: 169 DEANS 173
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 169 DNSGSTDVLTHMMPFY 184
DN G T + THMMPFY
Sbjct: 252 DNKGDTALFTHMMPFY 267
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 142 bits (358), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
D + F +I+GG W QGWNI D + + + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 50 DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 108
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
IL + L +N + KFIWAE+SY + ++ + E+ K +++ +VK+GQLE VTGGWVM
Sbjct: 109 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 168
Query: 160 DEANS 164
DEANS
Sbjct: 169 DEANS 173
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 169 DNSGSTDVLTHMMPFY 184
DN G T + THMMPFY
Sbjct: 252 DNKGDTALFTHMMPFY 267
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 142 bits (358), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
D + F +I+GG W QGWNI D + + + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 50 DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 108
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
IL + L +N + KFIWAE+SY + ++ + E+ K +++ +VK+GQLE VTGGWVM
Sbjct: 109 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 168
Query: 160 DEANS 164
DEANS
Sbjct: 169 DEANS 173
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 169 DNSGSTDVLTHMMPFY 184
DN G T + THMMPFY
Sbjct: 252 DNKGDTALFTHMMPFY 267
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
D + F +I+GG W QGWNI D + + + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 20 DRMSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 78
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
IL + L +N + KFIWAE+SY + ++ + E+ K +++ +VK+GQLE VTGGWVM
Sbjct: 79 HILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMP 138
Query: 160 DEANS 164
DEANS
Sbjct: 139 DEANS 143
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 169 DNSGSTDVLTHMMPFY 184
DN G T + THMMPFY
Sbjct: 222 DNKGDTALFTHMMPFY 237
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 138 bits (347), Expect = 4e-33, Method: Composition-based stats.
Identities = 65/125 (52%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 40 DEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTK 99
D F +I+GG W QGWNI D + + + L+VFVVPHSHNDPGW QTFE Y+ H TK
Sbjct: 20 DRXSFKDIDGGVWKQGWNIKYD-PLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTK 78
Query: 100 SILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMT 159
IL + L +N + KFIWAE+SY + ++ + E+ K + + +VK+GQLE VTGGWV
Sbjct: 79 HILSNALRHLHDNPEXKFIWAEISYFARFYHDLGENKKLQXKSIVKNGQLEFVTGGWVXP 138
Query: 160 DEANS 164
DEANS
Sbjct: 139 DEANS 143
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 8/103 (7%)
Query: 70 NLLRVFVVPHSHNDPGWKQTFESYFV--------HSTKSILDTMVTKLLENEKRKFIWAE 121
++L V +VPH+H+D GW +T + YF + ILD++++ LL N R+FI+ E
Sbjct: 12 DMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRFIYVE 71
Query: 122 MSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164
+++ S WW+ + T+ VR LV+ G+LE GGWVM DEA +
Sbjct: 72 IAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATT 114
>pdb|3N8T|A Chain A, Native Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis
pdb|3N92|A Chain A, Crystal Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis,
In Complex With Glucose
pdb|3N98|A Chain A, Crystal Structure Of Tk1436, A Gh57 Branching Enzyme From
Hyperthermophilic Archaeon Thermococcus Kodakaraensis,
In Complex With Glucose And Additives
Length = 562
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 76 VVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISED 135
V+ D K+ FE Y K++ + + + + + ++ + +WK I+ D
Sbjct: 63 VLAEQLTDEYMKKAFEEYMERKLKAMEEDLKSGKYDEKAVSYMLNYFRKVYDYWKAINGD 122
Query: 136 TKDKVRLLVKSGQLEIVTGG-------WVMTDEANSCNVSDNSGSTDVLTHMMP 182
K+R L G +E++T + DEA +++ + + M P
Sbjct: 123 IIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKP 176
>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase-Activated Protein Kinase 3
(Mk3)-Inhibitor Complex
pdb|3FXW|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated
Protein Kinase- Activated Protein Kinase 3INHIBITOR 2
COMPLEX
Length = 336
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 114 KRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVT 153
KR+ + + + W +SED K +RLL+K+ E +T
Sbjct: 242 KRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLT 281
>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b
pdb|3SHE|A Chain A, Novel Atp-Competitive Mk2 Inhibitors With Potent
Biochemical And Cell- Based Activity Throughout The
Series
Length = 317
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 114 KRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVT 153
KR+ + + + W +SED K +RLL+K+ E +T
Sbjct: 223 KRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLT 262
>pdb|1HI9|A Chain A, Zn-Dependent D-Aminopeptidase Dppa From Bacillus Subtilis,
A Self-Compartmentalizing Protease.
pdb|1HI9|B Chain B, Zn-Dependent D-Aminopeptidase Dppa From Bacillus Subtilis,
A Self-Compartmentalizing Protease.
pdb|1HI9|C Chain C, Zn-Dependent D-Aminopeptidase Dppa From Bacillus Subtilis,
A Self-Compartmentalizing Protease.
pdb|1HI9|D Chain D, Zn-Dependent D-Aminopeptidase Dppa From Bacillus Subtilis,
A Self-Compartmentalizing Protease.
pdb|1HI9|E Chain E, Zn-Dependent D-Aminopeptidase Dppa From Bacillus Subtilis,
A Self-Compartmentalizing Protease
Length = 274
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 124 YLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSD-NSGSTDVLTH 179
Y+S+ + IS D V SG+ G +MT+EAN C NSG T+VL +
Sbjct: 4 YMSVDMEGISGLPDDT---FVDSGKRNYERGRLIMTEEANYCIAEAFNSGCTEVLVN 57
>pdb|1K1X|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1X|B Chain B, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1Y|A Chain A, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
pdb|1K1Y|B Chain B, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
Length = 659
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 128 WWKTISEDTKDKVRLLVKSGQLEIVTGGW 156
W + D D +R L+K GQLEIV G+
Sbjct: 57 WIEENKPDYLDLLRSLIKRGQLEIVVAGF 85
>pdb|1K1W|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
Length = 659
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 128 WWKTISEDTKDKVRLLVKSGQLEIVTGGW 156
W + D D +R L+K GQLEIV G+
Sbjct: 57 WIEENKPDYLDLLRSLIKRGQLEIVVAGF 85
>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino(
Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6-
Difluoro-Phenyl)-Amide)
Length = 349
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 115 RKFIWAEMSYLSLWWKTISEDTKDKVRLLV 144
R+ + E ++S WW +S + KD VR L+
Sbjct: 261 RRILNCEYYFISPWWDEVSLNAKDLVRKLI 290
>pdb|1MDT|A Chain A, The Refined Structure Of Monomeric Diphtheria Toxin At 2.3
Angstroms Resolution
pdb|1MDT|B Chain B, The Refined Structure Of Monomeric Diphtheria Toxin At 2.3
Angstroms Resolution
pdb|1TOX|A Chain A, Diphtheria Toxin Dimer Complexed With Nad
pdb|1TOX|B Chain B, Diphtheria Toxin Dimer Complexed With Nad
pdb|1XDT|T Chain T, Complex Of Diphtheria Toxin And Heparin-Binding Epidermal
Growth Factor
pdb|1F0L|A Chain A, 1.55 Angstrom Crystal Structure Of Wild Type Diphtheria
Toxin
pdb|1F0L|B Chain B, 1.55 Angstrom Crystal Structure Of Wild Type Diphtheria
Toxin
pdb|1DDT|A Chain A, The Refined Structure Of Dimeric Diphtheria Toxin At 2.0
Angstroms Resolution
pdb|1SGK|A Chain A, Nucleotide-Free Diphtheria Toxin
Length = 535
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 90 FESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQL 149
FE+ ++ + M N R+ + + +S ++L W I + TK K+ L + G +
Sbjct: 167 FETRGKRGQDAMYEYMAQACAGNRVRRSVGSSLSCINLDWDVIRDKTKTKIESLKEHGPI 226
Query: 150 E 150
+
Sbjct: 227 K 227
>pdb|4AE0|A Chain A, Crystal Structure Of Diphtheria Toxin Mutant Crm197
pdb|4AE1|A Chain A, Crystal Structure Of Diphtheria Toxin Mutant Crm197 In
Complex With Nicotinamide
pdb|4AE1|B Chain B, Crystal Structure Of Diphtheria Toxin Mutant Crm197 In
Complex With Nicotinamide
Length = 535
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 90 FESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQL 149
FE+ ++ + M N R+ + + +S ++L W I + TK K+ L + G +
Sbjct: 167 FETRGKRGQDAMYEYMAQACAGNRVRRSVGSSLSCINLDWDVIRDKTKTKIESLKEHGPI 226
Query: 150 E 150
+
Sbjct: 227 K 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,043,509
Number of Sequences: 62578
Number of extensions: 234393
Number of successful extensions: 620
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 40
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)