Query psy11173
Match_columns 280
No_of_seqs 207 out of 523
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 19:54:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bvx_A Alpha-mannosidase 2; fa 100.0 1.2E-40 4.3E-45 347.1 9.1 156 30-187 41-210 (1045)
2 1o7d_A Lysosomal alpha-mannosi 100.0 1.3E-35 4.4E-40 273.6 9.1 127 60-187 3-153 (298)
3 2wyh_A Alpha-mannosidase; hydr 100.0 5.8E-29 2E-33 255.6 7.7 124 60-186 15-152 (923)
4 3lvt_A Glycosyl hydrolase, fam 99.9 4.6E-28 1.6E-32 249.2 6.9 114 71-186 6-133 (899)
5 1k1x_A 4-alpha-glucanotransfer 98.8 3.7E-09 1.3E-13 106.6 7.1 95 71-169 3-98 (659)
6 2b5d_X Alpha-amylase; (beta/al 84.3 3.3 0.00011 40.8 8.7 22 137-158 125-146 (528)
7 3n98_A Alpha-amylase, GH57 fam 73.5 1.7 5.7E-05 43.7 2.7 36 129-164 116-151 (562)
8 3p0b_A TT1467 protein; glycosi 70.5 2 6.7E-05 43.0 2.5 35 130-164 138-172 (540)
9 2ca6_A RAN GTPase-activating p 51.8 1.6 5.5E-05 38.7 -1.8 8 110-117 241-248 (386)
10 1ldd_A APC2WHB, anaphase promo 38.1 20 0.00068 27.0 2.6 23 134-156 48-71 (74)
11 2prs_A High-affinity zinc upta 33.8 1.3E+02 0.0043 26.4 7.6 44 108-151 168-226 (284)
12 1ucr_A Protein DSVD; dissimila 32.5 28 0.00095 26.8 2.6 46 104-152 7-55 (78)
13 1qbj_A Protein (double-strande 30.6 58 0.002 24.2 4.1 48 103-153 13-61 (81)
14 2v9v_A Selenocysteine-specific 30.6 1.8E+02 0.006 22.1 7.6 64 92-157 62-126 (135)
15 1xn7_A Hypothetical protein YH 29.9 78 0.0027 23.3 4.7 53 101-158 3-57 (78)
16 1lva_A Selenocysteine-specific 29.6 1.8E+02 0.0062 25.2 7.8 67 93-160 63-130 (258)
17 1qgp_A Protein (double strande 28.3 66 0.0023 23.3 4.0 48 103-153 17-65 (77)
18 2klq_A CBD, P105MCM, DNA repli 27.9 66 0.0023 25.5 4.3 61 89-154 9-85 (114)
19 1lbq_A Ferrochelatase; rossman 27.4 16 0.00056 34.2 0.7 82 74-166 203-286 (362)
20 3hcn_A Ferrochelatase, mitocho 26.5 17 0.0006 34.1 0.7 83 74-167 198-283 (359)
21 1pq4_A Periplasmic binding pro 24.9 2E+02 0.0069 25.4 7.4 43 109-151 185-240 (291)
22 4esj_A Type-2 restriction enzy 24.8 98 0.0033 28.4 5.2 55 102-156 192-253 (257)
23 3gi1_A LBP, laminin-binding pr 24.4 2E+02 0.007 25.3 7.3 44 108-151 173-231 (286)
24 3i5q_B Nucleoporin NUP170; hel 24.1 32 0.0011 31.0 2.0 47 81-130 156-207 (252)
25 2nz7_A NOD1, caspase recruitme 22.9 23 0.00077 27.6 0.6 61 76-144 4-64 (98)
26 3r6f_A HIT family protein; str 22.6 58 0.002 25.5 3.0 33 54-87 77-109 (135)
27 2llw_A Heat shock protein STI1 21.4 1.1E+02 0.0036 22.6 4.0 26 124-151 44-69 (71)
28 2ns0_A Hypothetical protein; r 21.2 61 0.0021 25.1 2.7 57 102-158 9-68 (85)
No 1
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...
Probab=100.00 E-value=1.2e-40 Score=347.09 Aligned_cols=156 Identities=45% Similarity=0.796 Sum_probs=144.1
Q ss_pred cccchhhhhHHHHHHHhcCCCcccccceeeecCCCCCCCCCceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHH
Q psy11173 30 GKESMGKVYEDEIEFANINGGKWTQGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKL 109 (280)
Q Consensus 30 ~~~~ml~~y~~~l~f~~~dgg~wkqG~~i~y~~~~~w~~~~~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L 109 (280)
.++||+++| +.|+|+|++||+|+|||+|.|.. +.|+...+++||||||||+|+|||||+++||...+++||++||..|
T Consensus 41 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~lV~HsH~D~gWl~t~~e~~~~~~~~~~~~vl~~L 118 (1045)
T 3bvx_A 41 VDVQMLELY-DRMSFKDIDGGVWKQGWNIKYDP-LKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHL 118 (1045)
T ss_dssp CSEEHHHHH-HHCCCCCCCCSSSTTSCCCCCCG-GGSBTTBCEEEEEEEEEECCSSSSSCHHHHHHHTHHHHHHHHHHHH
T ss_pred CCeeHHHHH-hcCCccCCCCccccccchhhhhc-cccCCCCceEEEEEecCCCCccccchHHHhhhHHHHHHHHHHHHHH
Confidence 589999999 99999999999999999999998 8899666999999999999999999999999878999999999999
Q ss_pred HhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCceeeccccccccccccccccCC--------------CCCch
Q psy11173 110 LENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDN--------------SGSTD 175 (280)
Q Consensus 110 ~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRLEfVgGGWVM~DEA~thYeS~~--------------~~Sid 175 (280)
.++|+|||+|++++||.+||+.++|+++++||+||++|||+||||||||||+|++||+|++ +..++
T Consensus 119 ~~~p~~~F~~~e~~~l~~w~~e~~Pe~~~~vk~lV~~Grle~~gG~Wv~~De~~~~~EslirQl~~G~~~~~~~FG~~~~ 198 (1045)
T 3bvx_A 119 HDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPT 198 (1045)
T ss_dssp HHCTTCCEEECCHHHHHHHHHHSCHHHHHHHHHHHHTTSEEESSCCSSCBCSSSCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHCCCcEEEEecHHHHHHHHHHCCHHHHHHHHHHHhCCCEEEECCccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999972 33355
Q ss_pred hhhcccccCcch
Q psy11173 176 VLTHMMPFYKEE 187 (280)
Q Consensus 176 ~~~~~~~f~kee 187 (280)
++|+++||++.-
T Consensus 199 ~~W~pD~FG~s~ 210 (1045)
T 3bvx_A 199 ASWAIAPFGHSP 210 (1045)
T ss_dssp EEEECCSSSBCT
T ss_pred eEEcCCCCCccH
Confidence 666677777653
No 2
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1
Probab=100.00 E-value=1.3e-35 Score=273.58 Aligned_cols=127 Identities=35% Similarity=0.712 Sum_probs=114.6
Q ss_pred ecCCCCCCCCCceEEEEecCccCCcchhccHHHHHHH--------HHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhc
Q psy11173 60 LDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVH--------STKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKT 131 (280)
Q Consensus 60 y~~~~~w~~~~~l~VHVVPHSH~D~GWLkT~eEYy~~--------~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~e 131 (280)
|.+|+.|+ +.+++||||||||+|+|||+|+++||.+ .+++||++||..|.++|++||++++++||.+||+.
T Consensus 3 ~~~~~~~~-~~~~~v~~v~HsH~D~gWl~t~~e~~~~~~~~i~~~~~~~~~~~vl~~l~~~p~~~F~~~e~~~~~~w~~~ 81 (298)
T 1o7d_A 3 YKTCPKVK-PDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRFIYVEIAFFSRWWRQ 81 (298)
T ss_dssp CTTCCCCC-SSSEEEEEEEBCBCCSSSSSCHHHHHHTCCTTTCCCCHHHHHHHHHHHHHHCTTCCEEECCHHHHHHHHHT
T ss_pred CcCCCCCC-CCceEEEEeCCCCCcccccccHHHhhccccchhHHHHHHHHHHHHHHHHHHCCCCeEEEecchHhHHHHHh
Confidence 48999999 8899999999999999999999999963 58899999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHcCCceeeccccccccccccccccCC--------------CCC--chhhhcccccCcch
Q psy11173 132 ISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANSCNVSDN--------------SGS--TDVLTHMMPFYKEE 187 (280)
Q Consensus 132 q~pe~ke~VKkLVknGRLEfVgGGWVM~DEA~thYeS~~--------------~~S--id~~~~~~~f~kee 187 (280)
++|+.+++||+||++|||+||||||||||+|+++|+|++ +.. ++.+|++++|++..
T Consensus 82 ~~Pe~~~~vk~lV~~Grle~vgG~wve~D~~~~~~eslirQl~~G~~~~~~~fG~~~~~~~~W~pD~FG~s~ 153 (298)
T 1o7d_A 82 QTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPRVAWHIDPFGHSR 153 (298)
T ss_dssp SCHHHHHHHHHHHHTTSEEESSCSSSCBCSSSCCHHHHHHHHHHHHHHHHHHHGGGGCCSEEEESSSSSCCH
T ss_pred cCHHHHHHHHHHHHCCCEEEECceeeccccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCceeEeCCCCCccH
Confidence 999999999999999999999999999999999999972 222 55666677776653
No 3
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Probab=99.95 E-value=5.8e-29 Score=255.57 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=106.3
Q ss_pred ecCCCCCCCCCceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCc-EEeechHHHHHHHhccChHHHH
Q psy11173 60 LDLAHETDPENLLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRK-FIWAEMSYLSLWWKTISEDTKD 138 (280)
Q Consensus 60 y~~~~~w~~~~~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rk-Fi~aEisff~~Ww~eq~pe~ke 138 (280)
|..|+.-+ ..+++||||||||+|+|||||+++|+. ++++||++||..|.++|+++ |+|++++++.+||..++|++++
T Consensus 15 ~~~~~~~~-~~~~~v~~v~HsH~D~~Wl~t~~~~~~-~~~~~~~~vl~~l~~~p~~~~F~~~~q~~~~~~~~~~~p~~~~ 92 (923)
T 2wyh_A 15 EVLFQGPA-MATKKVHIISHSHWDREWYMAYEQHHM-RLINLIDDLLEVFQTDPDFHSFHLDGQTIILDDYLKVRPEREP 92 (923)
T ss_dssp HHHSCCCC-CCCEEEEEEEBCBCCSSSSSCHHHHHH-HHHHHHHHHHHHHHHCTTCCCEECTTBTHHHHHHHHHCGGGHH
T ss_pred hhccCCCC-CCceEEEEEccCCCCcccccHHHHHHH-HHHHHHHHHHHHHHhCCCCceEEEeCCHHHHHHHHHHCHHHHH
Confidence 46667777 678999999999999999999999984 68899999999999999998 9998887777899999999999
Q ss_pred HHHHHHHcCCceeeccccccccccccccccCC-------------CCCchhhhcccccCcc
Q psy11173 139 KVRLLVKSGQLEIVTGGWVMTDEANSCNVSDN-------------SGSTDVLTHMMPFYKE 186 (280)
Q Consensus 139 ~VKkLVknGRLEfVgGGWVM~DEA~thYeS~~-------------~~Sid~~~~~~~f~ke 186 (280)
+||+||++|||+| ||||||||+|++||+|++ +..++++|+++||++.
T Consensus 93 ~vk~lV~~Grlei-G~wYv~~D~~~~~~es~irq~~~G~~~~~~fG~~~~~~w~pD~FG~s 152 (923)
T 2wyh_A 93 EIRQAIASGKLRI-GPFYILQDDFLTSSESNVRNMLIGKEDCDRWGASVPLGYFPDTFGNM 152 (923)
T ss_dssp HHHHHHHTTSEEC-CSBSSCBCSTTSCHHHHHHHHHHHHHHHHHHTCCCSSEEESSCSSBC
T ss_pred HHHHHHHcCCEEE-eeeeeccccccCCHHHHHHHHHHHHHHHHHcCCCCceeEecCCCCcc
Confidence 9999999999997 544499999999999982 2334566666666664
No 4
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}
Probab=99.94 E-value=4.6e-28 Score=249.25 Aligned_cols=114 Identities=15% Similarity=0.239 Sum_probs=95.1
Q ss_pred ceEEEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeec-hHHHHHHHhccChHHHHHHHHHHHcCCc
Q psy11173 71 LLRVFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAE-MSYLSLWWKTISEDTKDKVRLLVKSGQL 149 (280)
Q Consensus 71 ~l~VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aE-isff~~Ww~eq~pe~ke~VKkLVknGRL 149 (280)
+.+||||||||||+|||||+++|+. ++.++|++||..|.++|+|+|++++ +.+|.+||..++|+.+.+||+||++|||
T Consensus 6 ~~~v~~v~HsH~D~~Wl~t~~e~~~-~~~~~~~~~l~~l~~~p~~~f~~~~~q~~~~~~~~~~~p~~~~~vk~lv~~Gr~ 84 (899)
T 3lvt_A 6 KKKVYIVSHSHWDREWYLPYEEHHM-RLIELVDNVLDLIENDPEFNSFHLDGQTIILDDYLQVRPEKKEAVKKAVQAGKL 84 (899)
T ss_dssp CEEEEEEEEECC----CCCHHHHHH-HHHHHHHHHHHHHHHCTTCCCEECTTBTHHHHHHHHHCGGGHHHHHHHHHTTSE
T ss_pred cceEEEECCCCCChHhcCcHHHHHH-HHHHHHHHHHHHHHhCCCceEEEEcccHHHHHHHHhhCHHHHHHHHHHHHcCCE
Confidence 4689999999999999999999985 6888999999999999999999975 5678889999999999999999999999
Q ss_pred eeeccccccccccccccccCC-------------CCCchhhhcccccCcc
Q psy11173 150 EIVTGGWVMTDEANSCNVSDN-------------SGSTDVLTHMMPFYKE 186 (280)
Q Consensus 150 EfVgGGWVM~DEA~thYeS~~-------------~~Sid~~~~~~~f~ke 186 (280)
+ |||||||||++++||+|++ +..++++|++++|++.
T Consensus 85 e-igg~~v~~D~~~~~~es~irq~~~G~~~~~~fG~~~~~~w~~D~FG~s 133 (899)
T 3lvt_A 85 K-IGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQLGYFPDTFGNM 133 (899)
T ss_dssp E-CCSBSSCCCGGGSCHHHHHHHHHHHHHHHHHHTCCCCCEEESCCCT--
T ss_pred E-ECchhccccccCCCHHHHHHHHHHHHHHHHHcCCCCceeEeCCCCCCc
Confidence 9 7999999999999999972 2335555666666654
No 5
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Probab=98.83 E-value=3.7e-09 Score=106.63 Aligned_cols=95 Identities=24% Similarity=0.196 Sum_probs=79.9
Q ss_pred ceEEEEecCccCCcch-hccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCc
Q psy11173 71 LLRVFVVPHSHNDPGW-KQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQL 149 (280)
Q Consensus 71 ~l~VHVVPHSH~D~GW-LkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRL 149 (280)
++.|.+|.|+|.+++| .+.+.+ .+...+..++..|.+.|++||...=...+..|+....|....+||+|++.||+
T Consensus 3 ~~~l~lv~H~HqP~~~~~~~~e~----a~~~~Y~pll~ll~~~~~~k~~~~~s~~ll~~l~~~~p~l~~~ik~l~~~G~v 78 (659)
T 1k1x_A 3 RINFIFGIHNHQPLGNFGWVFEE----AYNRSYRPFMEILEEFPEMKVNVHFSGPLLEWIEENKPDYLDLLRSLIKRGQL 78 (659)
T ss_dssp CEEEEEEEEECCCTTCCHHHHHH----HHHHTHHHHHHHHTTCTTCCEEEEECHHHHHHHHHHCHHHHHHHHHHHHTTCE
T ss_pred ceEEEEEEEccCCCccCcHHHHH----HHHHHHHHHHHHHHhCCCcEEEEEccHHHHHHHHHHCHHHHHHHHHHHHCCCE
Confidence 3679999999999994 444432 35567888999999999999985556677778899999999999999999999
Q ss_pred eeeccccccccccccccccC
Q psy11173 150 EIVTGGWVMTDEANSCNVSD 169 (280)
Q Consensus 150 EfVgGGWVM~DEA~thYeS~ 169 (280)
+|+||+|+.|+.+++...+.
T Consensus 79 E~l~~~~~Hpi~~l~p~e~~ 98 (659)
T 1k1x_A 79 EIVVAGFYEPVLAAIPKEDR 98 (659)
T ss_dssp EEEBCCTTCCCGGGSCHHHH
T ss_pred EEEccCcccccccCCCHHHH
Confidence 99999999999988776554
No 6
>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima} SCOP: a.8.3.3 c.6.2.4
Probab=84.30 E-value=3.3 Score=40.83 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCceeecccccc
Q psy11173 137 KDKVRLLVKSGQLEIVTGGWVM 158 (280)
Q Consensus 137 ke~VKkLVknGRLEfVgGGWVM 158 (280)
-.++|+|++.|++||++++++-
T Consensus 125 i~~~r~L~~~G~vEll~~~y~H 146 (528)
T 2b5d_X 125 LEGFKKYQETGKLEIVTCNATH 146 (528)
T ss_dssp HHHHHHHHHHTSEEEEEECTTC
T ss_pred HHHHHHHHHCCCEEEEcCchhh
Confidence 3678999999999999998853
No 7
>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A*
Probab=73.45 E-value=1.7 Score=43.75 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=29.6
Q ss_pred HhccChHHHHHHHHHHHcCCceeecccccccccccc
Q psy11173 129 WKTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164 (280)
Q Consensus 129 w~eq~pe~ke~VKkLVknGRLEfVgGGWVM~DEA~t 164 (280)
|...++..-.++|+|++.|++||++++++-+=..+.
T Consensus 116 ~~~~~~dii~~fr~L~~~G~iElit~~~tH~~lPLl 151 (562)
T 3n98_A 116 WKAINGDIIGKLRELQDQGYVEVITSAATHGYLPLL 151 (562)
T ss_dssp HHHTTTCHHHHHHHHHHTTSEEEEEECTTCBCGGGC
T ss_pred HHHhhhHHHHHHHHHHHCCCEEEEcCCchhhHhhcC
Confidence 345678899999999999999999999976655444
No 8
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=70.49 E-value=2 Score=43.04 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=29.3
Q ss_pred hccChHHHHHHHHHHHcCCceeecccccccccccc
Q psy11173 130 KTISEDTKDKVRLLVKSGQLEIVTGGWVMTDEANS 164 (280)
Q Consensus 130 ~eq~pe~ke~VKkLVknGRLEfVgGGWVM~DEA~t 164 (280)
....++.-.++|+|++.|++||++++++-+=..+.
T Consensus 138 ~~~~~dii~~fr~L~~~G~iEiit~~~tH~~lPLl 172 (540)
T 3p0b_A 138 QRLSGDLVAAFRKAEEGGQVELITSNATHGYSPLL 172 (540)
T ss_dssp HHTTTCHHHHHHHHHHHTSEEEEEECTTCBCGGGC
T ss_pred HHhhHHHHHHHHHHHHCCCEEEEcCCchhhHHhcC
Confidence 44678899999999999999999999977655554
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=51.75 E-value=1.6 Score=38.68 Aligned_cols=8 Identities=0% Similarity=-0.354 Sum_probs=3.0
Q ss_pred HhCCCCcE
Q psy11173 110 LENEKRKF 117 (280)
Q Consensus 110 ~~dp~rkF 117 (280)
...|.-+.
T Consensus 241 ~~~~~L~~ 248 (386)
T 2ca6_A 241 KSWPNLRE 248 (386)
T ss_dssp GGCTTCCE
T ss_pred ccCCCcCE
Confidence 33343333
No 10
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=38.08 E-value=20 Score=27.00 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHcCCceee-cccc
Q psy11173 134 EDTKDKVRLLVKSGQLEIV-TGGW 156 (280)
Q Consensus 134 pe~ke~VKkLVknGRLEfV-gGGW 156 (280)
++.+.-+.++|++|+|+++ ||-|
T Consensus 48 ~eL~~fL~~~v~e~kL~~~~gG~Y 71 (74)
T 1ldd_A 48 QQLEGYLNTLADEGRLKYIANGSY 71 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTTEE
T ss_pred HHHHHHHHHHHhCCeEEEeCCCEE
Confidence 5677888899999999976 5555
No 11
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=33.75 E-value=1.3e+02 Score=26.44 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=31.4
Q ss_pred HHHhCCCCcEEeec--hHHHHHHHh-------------ccChHHHHHHHHHHHcCCcee
Q psy11173 108 KLLENEKRKFIWAE--MSYLSLWWK-------------TISEDTKDKVRLLVKSGQLEI 151 (280)
Q Consensus 108 ~L~~dp~rkFi~aE--isff~~Ww~-------------eq~pe~ke~VKkLVknGRLEf 151 (280)
.|..-+.++|+... ..||.+||- ..+|.....|.++|+..++-.
T Consensus 168 ~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~ 226 (284)
T 2prs_A 168 ELAPLKGKGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATC 226 (284)
T ss_dssp HHGGGTTCCEEEEESCCHHHHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCE
T ss_pred HHhcCCCCeEEEECccHHHHHHHCCCeEeEeeccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 34445778888766 489999982 133677888888999888754
No 12
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=32.46 E-value=28 Score=26.81 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=27.0
Q ss_pred HHHHHHHhC--CCCcEEeechHHHHHHH-hccChHHHHHHHHHHHcCCceee
Q psy11173 104 TMVTKLLEN--EKRKFIWAEMSYLSLWW-KTISEDTKDKVRLLVKSGQLEIV 152 (280)
Q Consensus 104 sVl~~L~~d--p~rkFi~aEisff~~Ww-~eq~pe~ke~VKkLVknGRLEfV 152 (280)
.||..|..- +.-+|.+.+. .. =. ..-..+.+..|..||++|+|++-
T Consensus 7 ~Ile~l~~k~~~KskfYf~D~--~k-~~P~~k~r~vKK~~~~LV~Eg~leyw 55 (78)
T 1ucr_A 7 KVVDFLNSKSGSKSKFYFNDF--TD-LFPDMKQREVKKILTALVNDEVLEYW 55 (78)
T ss_dssp HHHHHHSSHHHHSSCEEHHHH--HH-HCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcccccccchHHHH--HH-HccccCHHHHHHHHHHHHhcCceEEE
Confidence 345556553 4556765431 11 11 12224457888889999999983
No 13
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=30.63 E-value=58 Score=24.18 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC-CCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCceeec
Q psy11173 103 DTMVTKLLENE-KRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVT 153 (280)
Q Consensus 103 dsVl~~L~~dp-~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRLEfVg 153 (280)
..++..|..++ ..++...+++-. ..-.....+..|++|.+.|.|..++
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~---Lgvsr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGK---LGTPKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHH---HTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEecC
Confidence 34556666665 455555554321 1222356688999999999998876
No 14
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=30.57 E-value=1.8e+02 Score=22.06 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHH-HHHHHHHHHcCCceeeccccc
Q psy11173 92 SYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDT-KDKVRLLVKSGQLEIVTGGWV 157 (280)
Q Consensus 92 EYy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~-ke~VKkLVknGRLEfVgGGWV 157 (280)
.++....+.|++.+-.-=.++|.+.=+-.+ ..-+++....++.. ...|..|+++|+|.. .|+||
T Consensus 62 ~~~~~l~~~l~~~L~~yH~~~P~~~G~~ke-eLr~~~~~~~~~~~~~~ll~~l~~~g~l~~-~~~~v 126 (135)
T 2v9v_A 62 ERYQAWWQAVTRALEEFHSRYPLRPGLARE-ELRSRYFSRLPARVYQALLEEWSREGRLQL-AANTV 126 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSSCEEHH-HHHHHHCTTSCHHHHHHHHHHHHHTTSEEE-CSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCCCHH-HHHHHhcccCCHHHHHHHHHHHHHCCCEEe-cCCEE
Confidence 345454555665555555678887633322 23344444455554 556688999999955 55554
No 15
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=29.94 E-value=78 Score=23.34 Aligned_cols=53 Identities=13% Similarity=-0.002 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCceee--cccccc
Q psy11173 101 ILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIV--TGGWVM 158 (280)
Q Consensus 101 ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRLEfV--gGGWVM 158 (280)
||..+++.|..+... .++-|.+-+.-.....|..+.+|.+.|.|.-+ -||-+.
T Consensus 3 ~L~~Il~~L~~~g~v-----sv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~~~~GgaC~ 57 (78)
T 1xn7_A 3 SLIQVRDLLALRGRM-----EAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCL 57 (78)
T ss_dssp CHHHHHHHHHHSCSB-----CHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECCCCCCCC
T ss_pred hHHHHHHHHHHcCCC-----cHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCcCCCCC
Confidence 466677777766542 23445555544556779999999999999888 677654
No 16
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=29.63 E-value=1.8e+02 Score=25.23 Aligned_cols=67 Identities=7% Similarity=0.063 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHHH-HHHHHHHHcCCceeecccccccc
Q psy11173 93 YFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTK-DKVRLLVKSGQLEIVTGGWVMTD 160 (280)
Q Consensus 93 Yy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~k-e~VKkLVknGRLEfVgGGWVM~D 160 (280)
++......|+..+-..-.++|.+.=+-.+ ...+++....++... ..|..|+++|.|...+|++..|+
T Consensus 63 ~~~~~~~~l~~~L~~~H~~~P~~~G~~~~-~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~~~~~v~l~~ 130 (258)
T 1lva_A 63 RYQAWWQAVTRALEEFHSRYPLRPGLARE-ELRSRYFSRLPARVYQALLEEWSREGRLQLAANTVALAG 130 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSSCEEHH-HHHHHHCTTSCHHHHHHHHHHHHHTTSEEEETTEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCCCHH-HHHHhccccCCHHHHHHHHHHHHHCCCEEecCCEEeCCC
Confidence 44444555666656666779987754433 223333233455554 45588999999977666555555
No 17
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=28.35 E-value=66 Score=23.33 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=32.4
Q ss_pred HHHHHHHHhCC-CCcEEeechHHHHHHHhccChHHHHHHHHHHHcCCceeec
Q psy11173 103 DTMVTKLLENE-KRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSGQLEIVT 153 (280)
Q Consensus 103 dsVl~~L~~dp-~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknGRLEfVg 153 (280)
..++..|..++ ..+....+++=. ..-.....+..|++|.+.|.+..++
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~---Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGK---LGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHH---HCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEecC
Confidence 45677788877 445665554322 2223356788999999999998775
No 18
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=27.93 E-value=66 Score=25.50 Aligned_cols=61 Identities=21% Similarity=0.164 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCCc-EEeechHHHHHHHhccCh--------------HHHHHHHHHHH-cCCceee
Q psy11173 89 TFESYFVHSTKSILDTMVTKLLENEKRK-FIWAEMSYLSLWWKTISE--------------DTKDKVRLLVK-SGQLEIV 152 (280)
Q Consensus 89 T~eEYy~~~v~~ILdsVl~~L~~dp~rk-Fi~aEisff~~Ww~eq~p--------------e~ke~VKkLVk-nGRLEfV 152 (280)
||+.|.. |.+-+|..|..+...- =-=...+=|-.||..+.. -.+..|++||+ .|-|-.+
T Consensus 9 s~d~Y~~-----i~n~lV~~ir~~E~~~~~~G~~~~eLv~WYLeq~e~~i~seeel~~e~~lv~kVI~rLI~~D~iLi~v 83 (114)
T 2klq_A 9 GFSEYSR-----ISNLIVLHLRKVEEEEDESALKRSELVNWYLKEIESEIDSEEELINKKRIIEKVIHRLTHYDHVLIEL 83 (114)
T ss_dssp CCHHHHH-----HHHHHHHHHHHHHHHTSSSCBCHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHTTCCEECC
T ss_pred eHHHHHH-----HHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhCCEEEEE
Confidence 7788762 4444455554421100 001124567779987631 14778899999 7877444
Q ss_pred cc
Q psy11173 153 TG 154 (280)
Q Consensus 153 gG 154 (280)
.|
T Consensus 84 ~~ 85 (114)
T 2klq_A 84 TQ 85 (114)
T ss_dssp SS
T ss_pred cC
Confidence 44
No 19
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A {Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Probab=27.39 E-value=16 Score=34.20 Aligned_cols=82 Identities=13% Similarity=0.299 Sum_probs=50.7
Q ss_pred EEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHHHcC--Ccee
Q psy11173 74 VFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLVKSG--QLEI 151 (280)
Q Consensus 74 VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLVknG--RLEf 151 (280)
.|=+|.++.+.| -+ | ..++..+..-|...|.-.+.+...|-...=...| ..|.+.+.|++| +.| ++-+
T Consensus 203 aHglP~~~~~~G--Dp---Y-~~q~~~ta~ll~e~lg~~~~~~~~fQSr~G~~~W---L~P~t~~~l~~L-~~G~k~vvV 272 (362)
T 1lbq_A 203 AHSLPMDVVNTG--DA---Y-PAEVAATVYNIMQKLKFKNPYRLVWQSQVGPKPW---LGAQTAEIAEFL-GPKVDGLMF 272 (362)
T ss_dssp EECCBHHHHTTT--CS---H-HHHHHHHHHHHHHHTTTCSCEEEEEECCCSSSCB---CSCBHHHHHHHH-GGGCSCEEE
T ss_pred cCCCccccccCC--Cc---H-HHHHHHHHHHHHHHcCCCCCEEEEEECCCCCccc---CCCCHHHHHHHH-HcCCCeEEE
Confidence 455566676666 22 4 4578778877888886544444444221001133 359999999999 886 8888
Q ss_pred ecccccccccccccc
Q psy11173 152 VTGGWVMTDEANSCN 166 (280)
Q Consensus 152 VgGGWVM~DEA~thY 166 (280)
+..|+| +|+.=|-|
T Consensus 273 vP~gFv-sD~lETL~ 286 (362)
T 1lbq_A 273 IPIAFT-SDHIETLH 286 (362)
T ss_dssp ECTTCS-SCCHHHHT
T ss_pred ECCeec-hhhHhhHH
Confidence 888864 36655544
No 20
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo sapiens} SCOP: c.92.1.1 PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 4f4d_A* 3aqi_A* 2pnj_A* 2po5_A* 2po7_A*
Probab=26.46 E-value=17 Score=34.12 Aligned_cols=83 Identities=13% Similarity=0.335 Sum_probs=53.9
Q ss_pred EEEecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeech-HHHHHHHhccChHHHHHHHHHHHcC--Cce
Q psy11173 74 VFVVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEM-SYLSLWWKTISEDTKDKVRLLVKSG--QLE 150 (280)
Q Consensus 74 VHVVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aEi-sff~~Ww~eq~pe~ke~VKkLVknG--RLE 150 (280)
.|=||.++.+.| +- |..++..+..-|...|.....++..|-.. .- ..| ..|.+.+.|++|.+.| ++-
T Consensus 198 aHgiP~~~~~~G-----Dp-Y~~q~~~t~~lv~e~Lg~~~~~~l~~QSr~G~-~~W---L~P~t~d~l~~L~~~G~k~vv 267 (359)
T 3hcn_A 198 AHSLPMSVVNRG-----DP-YPQEVSATVQKVMERLEYCNPYRLVWQSKVGP-MPW---LGPQTDESIKGLCERGRKNIL 267 (359)
T ss_dssp EECCBHHHHTTT-----CS-HHHHHHHHHHHHHHHTTTCSCEEEEEECCSCS-SCB---SSSBHHHHHHHHHHTTCCEEE
T ss_pred cCCChHhhcccC-----CC-HHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCC-CCC---CCCCHHHHHHHHHHcCCCeEE
Confidence 466677776666 22 34677778877777776543344444210 00 134 3589999999999987 787
Q ss_pred eeccccccccccccccc
Q psy11173 151 IVTGGWVMTDEANSCNV 167 (280)
Q Consensus 151 fVgGGWVM~DEA~thYe 167 (280)
++..|+|- |+.=|-|.
T Consensus 268 v~P~gFvs-D~lETL~E 283 (359)
T 3hcn_A 268 LVPIAFTS-DHIETLYE 283 (359)
T ss_dssp EECTTCCS-CCCCCHHH
T ss_pred EECCccch-hhHHhHHH
Confidence 88888876 77755554
No 21
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.90 E-value=2e+02 Score=25.38 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=31.5
Q ss_pred HHhCCCCcEEeec--hHHHHHHHh-----------ccChHHHHHHHHHHHcCCcee
Q psy11173 109 LLENEKRKFIWAE--MSYLSLWWK-----------TISEDTKDKVRLLVKSGQLEI 151 (280)
Q Consensus 109 L~~dp~rkFi~aE--isff~~Ww~-----------eq~pe~ke~VKkLVknGRLEf 151 (280)
|..-+.++|+... -.||.++|- ..+|.....|+++|+..++-.
T Consensus 185 l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~ 240 (291)
T 1pq4_A 185 LQPLPQRKFIVFHPSWAYFARDYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLTM 240 (291)
T ss_dssp HTTCSCCEEEESSCCCHHHHHHTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCCE
T ss_pred HhCCCCCEEEEECCchHHHHHHCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 4445778888766 488888882 135788888999999988754
No 22
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=24.84 E-value=98 Score=28.44 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCCcEEeechHHHHHHHhccCh-------HHHHHHHHHHHcCCceeecccc
Q psy11173 102 LDTMVTKLLENEKRKFIWAEMSYLSLWWKTISE-------DTKDKVRLLVKSGQLEIVTGGW 156 (280)
Q Consensus 102 LdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~p-------e~ke~VKkLVknGRLEfVgGGW 156 (280)
+-.|+.-+.+=|..-|...++.-|..-.....| ..|.+++-|-..|-|+|++-|-
T Consensus 192 lldi~~cid~i~~~eFtL~diY~fe~~L~~~~P~N~~Ik~KIRQqLQ~LRD~g~IeFl~rG~ 253 (257)
T 4esj_A 192 TIEILNCIDKIEGSEFTLEDMYRFESDLKNIFVKNNHIKEKIRQQLQILRDKEIIEFKGRGK 253 (257)
T ss_dssp HHHHHHHHHHSCSSEEEHHHHHTTHHHHHHHSTTCSCHHHHHHHHHHHHHHTTSEEECSTTE
T ss_pred HHHHHHHHHhcCcceeeHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhhcCceEEecCCc
Confidence 334556666778888999998666655555554 3477777799999999999885
No 23
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=24.35 E-value=2e+02 Score=25.33 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=31.7
Q ss_pred HHHhCCCCcEEeec--hHHHHHHHh-------------ccChHHHHHHHHHHHcCCcee
Q psy11173 108 KLLENEKRKFIWAE--MSYLSLWWK-------------TISEDTKDKVRLLVKSGQLEI 151 (280)
Q Consensus 108 ~L~~dp~rkFi~aE--isff~~Ww~-------------eq~pe~ke~VKkLVknGRLEf 151 (280)
.|..-+.++|+... ..||.++|- ..+|..-..|.++|+..++..
T Consensus 173 ~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~ 231 (286)
T 3gi1_A 173 KFKKVRSKTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKT 231 (286)
T ss_dssp HHTTCSCCEEEEEESCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCE
T ss_pred HHhcCCCCEEEEECCchHHHHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 34456788887665 589999882 234777888889999888754
No 24
>3i5q_B Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 2.20A {Saccharomyces cerevisiae}
Probab=24.10 E-value=32 Score=31.04 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=29.2
Q ss_pred cCCcchhccHHH----HHHHHHHHHHHHHHHHHHhCCCCcEEeechHHH-HHHHh
Q psy11173 81 HNDPGWKQTFES----YFVHSTKSILDTMVTKLLENEKRKFIWAEMSYL-SLWWK 130 (280)
Q Consensus 81 H~D~GWLkT~eE----Yy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff-~~Ww~ 130 (280)
|..+||+-..=- -| ..+-.||++++.+ .+..++|+..+|+|| ..|+.
T Consensus 156 ~~~~gwv~~~fl~~gV~~-~~L~~vl~~L~~~--~g~~~~~~~~ei~~li~~W~~ 207 (252)
T 3i5q_B 156 HIVSGSIVSIFITAGVSF-NKMYYILKELIET--SDSDNSVFNKEMTWLIHEWYK 207 (252)
T ss_dssp GCCTTTTHHHHHHHTCCH-HHHHHHHHHHHHT--CSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCCH-HHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHH
Confidence 566777654211 01 1244677777777 566788998998777 45544
No 25
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=22.87 E-value=23 Score=27.58 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=36.2
Q ss_pred EecCccCCcchhccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeechHHHHHHHhccChHHHHHHHHHH
Q psy11173 76 VVPHSHNDPGWKQTFESYFVHSTKSILDTMVTKLLENEKRKFIWAEMSYLSLWWKTISEDTKDKVRLLV 144 (280)
Q Consensus 76 VVPHSH~D~GWLkT~eEYy~~~v~~ILdsVl~~L~~dp~rkFi~aEisff~~Ww~eq~pe~ke~VKkLV 144 (280)
|-.|||.+.-+++.-..-+..++. .++.+++.|..+. ++-.+..-+ ....+....++++|+
T Consensus 4 ~~~~~~~~~~~L~~~R~~LV~~l~-~V~~lLD~LL~~~---VL~~ee~~I----~~~~~T~~~kaR~Ll 64 (98)
T 2nz7_A 4 IPSESHPHIQLLKSNRELLVTHIR-NTQCLVDNLLKND---YFSAEDAEI----VCACPTQPDKVRKIL 64 (98)
T ss_dssp --CCCCHHHHHHHHTHHHHHHHCC-CCHHHHHHHHHTT---SSCHHHHHH----HHTCCSHHHHHHHHH
T ss_pred ccCCCcchHHHHHHHHHHHHHHHh-hHHHHHHHHHHcC---CCCHHHHHH----HccCCCcHHHHHHHH
Confidence 457999999998876665544443 5777788886432 222222111 223466677777776
No 26
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=22.56 E-value=58 Score=25.53 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=22.9
Q ss_pred ccceeeecCCCCCCCCCceEEEEecCccCCcchh
Q psy11173 54 QGWNIGLDLAHETDPENLLRVFVVPHSHNDPGWK 87 (280)
Q Consensus 54 qG~~i~y~~~~~w~~~~~l~VHVVPHSH~D~GWL 87 (280)
.||+|..+... -+...++.|||||-.-.|.||-
T Consensus 77 ~~~ni~~n~g~-gq~v~HlH~HiiPR~~~d~g~~ 109 (135)
T 3r6f_A 77 ERYNILQNNGN-HQEVFHVHFHVIPFVSADERLM 109 (135)
T ss_dssp CSEEEECCSSS-SCSSSSCCEEEEECCBTTBSCC
T ss_pred CCeEEEEEcCC-CCCccEEEEEEeccccCCCCce
Confidence 46777665423 2335689999999988887774
No 27
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=21.37 E-value=1.1e+02 Score=22.56 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=20.1
Q ss_pred HHHHHHhccChHHHHHHHHHHHcCCcee
Q psy11173 124 YLSLWWKTISEDTKDKVRLLVKSGQLEI 151 (280)
Q Consensus 124 ff~~Ww~eq~pe~ke~VKkLVknGRLEf 151 (280)
.+.+.+ .+|..+..+++|+..|-|.+
T Consensus 44 ~~~k~~--~nP~v~~~i~kl~~aGii~~ 69 (71)
T 2llw_A 44 ALQEHM--KNPEVFKKIQTLIAAGIIRT 69 (71)
T ss_dssp HHHHHH--HSHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHH--hCHHHHHHHHHHHHcchhhc
Confidence 344544 37999999999999997753
No 28
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=21.16 E-value=61 Score=25.10 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=41.3
Q ss_pred HHHHHHHHHh-CCCCcEEeechH--HHHHHHhccChHHHHHHHHHHHcCCceeecccccc
Q psy11173 102 LDTMVTKLLE-NEKRKFIWAEMS--YLSLWWKTISEDTKDKVRLLVKSGQLEIVTGGWVM 158 (280)
Q Consensus 102 LdsVl~~L~~-dp~rkFi~aEis--ff~~Ww~eq~pe~ke~VKkLVknGRLEfVgGGWVM 158 (280)
=+.++..|.. .|..++.=+|++ +.-.-|...-+..|....+|++.|+|.|.-+|=+-
T Consensus 9 e~~Il~ll~~R~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~La~~G~v~I~qkG~pV 68 (85)
T 2ns0_A 9 EECIRALLDARADSASICPSDVARAVAPDDWRPLMEPVREAAGRLADAGEVEVTQKGAVV 68 (85)
T ss_dssp HHHHHHHHHHSCTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHHHHTTSEEEEETTEEC
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHHHHHCCcEEEEECCEEc
Confidence 3445566665 466677777752 22334777779999999999999999999888743
Done!