Query psy11185
Match_columns 312
No_of_seqs 229 out of 2240
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 20:17:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4716|consensus 100.0 2.7E-28 5.8E-33 206.5 15.8 211 100-311 16-226 (503)
2 TIGR01438 TGR thioredoxin and 99.9 1.8E-24 3.8E-29 202.2 23.0 207 103-311 2-208 (484)
3 COG1249 Lpd Pyruvate/2-oxoglut 99.9 2.9E-23 6.4E-28 189.8 21.8 198 101-311 2-201 (454)
4 PLN02507 glutathione reductase 99.9 9.7E-23 2.1E-27 191.2 23.5 208 101-311 23-231 (499)
5 PRK06467 dihydrolipoamide dehy 99.9 1.9E-22 4.1E-27 188.3 23.3 199 102-311 3-202 (471)
6 PLN02546 glutathione reductase 99.9 1.6E-22 3.5E-27 190.9 22.6 203 101-311 77-280 (558)
7 KOG0405|consensus 99.9 3.8E-23 8.3E-28 175.9 15.3 200 101-311 18-217 (478)
8 TIGR01424 gluta_reduc_2 glutat 99.9 3E-22 6.5E-27 186.0 22.8 193 103-311 2-194 (446)
9 PTZ00058 glutathione reductase 99.9 2.4E-22 5.2E-27 189.6 20.6 194 101-311 46-265 (561)
10 PTZ00052 thioredoxin reductase 99.9 5.9E-22 1.3E-26 186.0 22.8 205 102-311 4-210 (499)
11 PRK06370 mercuric reductase; V 99.9 9.7E-22 2.1E-26 183.6 23.2 194 102-311 4-199 (463)
12 TIGR01421 gluta_reduc_1 glutat 99.9 8.1E-22 1.8E-26 183.1 22.1 192 103-311 2-194 (450)
13 TIGR01423 trypano_reduc trypan 99.9 1E-21 2.2E-26 183.3 22.6 208 102-311 2-218 (486)
14 PRK05976 dihydrolipoamide dehy 99.9 1.8E-21 3.8E-26 182.2 24.0 198 102-311 3-208 (472)
15 PRK05249 soluble pyridine nucl 99.9 1.6E-21 3.5E-26 182.2 23.1 201 100-311 2-203 (461)
16 PRK14694 putative mercuric red 99.9 1.5E-21 3.2E-26 182.5 22.2 200 100-311 3-206 (468)
17 PRK06116 glutathione reductase 99.9 1.8E-21 3.9E-26 181.3 22.5 192 102-311 3-195 (450)
18 PRK14727 putative mercuric red 99.9 2.9E-21 6.2E-26 180.9 21.8 201 100-311 13-216 (479)
19 PRK06416 dihydrolipoamide dehy 99.9 5.8E-21 1.3E-25 178.4 22.9 195 102-311 3-200 (462)
20 PRK07846 mycothione reductase; 99.9 3.5E-21 7.6E-26 178.8 20.6 191 103-311 1-194 (451)
21 PRK13748 putative mercuric red 99.9 6.4E-21 1.4E-25 182.3 21.2 198 102-311 97-298 (561)
22 PRK06912 acoL dihydrolipoamide 99.9 1.9E-20 4.1E-25 174.6 22.7 196 105-311 2-198 (458)
23 PTZ00153 lipoamide dehydrogena 99.9 1.2E-20 2.6E-25 180.5 21.2 200 102-311 115-340 (659)
24 PRK07845 flavoprotein disulfid 99.9 3.1E-20 6.6E-25 173.4 23.4 198 105-311 3-205 (466)
25 PRK06115 dihydrolipoamide dehy 99.9 3.4E-20 7.4E-25 173.1 22.5 195 103-311 3-202 (466)
26 TIGR02053 MerA mercuric reduct 99.9 4E-20 8.6E-25 172.8 21.2 192 104-311 1-194 (463)
27 TIGR01350 lipoamide_DH dihydro 99.9 9E-20 1.9E-24 170.5 23.0 196 103-311 1-198 (461)
28 PRK07818 dihydrolipoamide dehy 99.9 1.1E-19 2.4E-24 169.9 23.2 194 103-311 4-200 (466)
29 PRK06327 dihydrolipoamide dehy 99.9 1.3E-19 2.7E-24 169.7 23.1 202 103-311 4-211 (475)
30 PRK06292 dihydrolipoamide dehy 99.9 1.1E-19 2.4E-24 169.8 21.8 190 103-311 3-197 (460)
31 TIGR03452 mycothione_red mycot 99.8 6.8E-20 1.5E-24 170.4 19.3 191 103-311 2-197 (452)
32 PRK07251 pyridine nucleotide-d 99.8 2.2E-19 4.7E-24 166.7 19.9 181 103-311 3-185 (438)
33 COG1249 Lpd Pyruvate/2-oxoglut 99.8 9.1E-21 2E-25 173.4 8.7 188 19-224 182-376 (454)
34 PRK08010 pyridine nucleotide-d 99.8 6.2E-19 1.3E-23 163.8 20.3 181 103-311 3-186 (441)
35 KOG1335|consensus 99.8 7.2E-19 1.6E-23 151.8 18.3 197 102-311 38-239 (506)
36 KOG1335|consensus 99.8 2.9E-20 6.3E-25 160.4 6.5 198 19-231 220-424 (506)
37 COG2072 TrkA Predicted flavopr 99.7 2.1E-17 4.6E-22 152.6 14.9 188 102-312 7-204 (443)
38 PF00743 FMO-like: Flavin-bind 99.7 5.8E-18 1.2E-22 159.0 9.4 196 105-312 3-212 (531)
39 KOG0405|consensus 99.7 3.7E-18 8E-23 145.7 6.3 171 19-207 198-374 (478)
40 COG0492 TrxB Thioredoxin reduc 99.7 2.3E-16 5E-21 137.9 16.9 162 103-311 3-171 (305)
41 PLN02172 flavin-containing mon 99.7 7.1E-17 1.5E-21 149.7 12.8 195 103-312 10-233 (461)
42 KOG1399|consensus 99.7 9.8E-17 2.1E-21 146.5 12.9 201 103-312 6-215 (448)
43 PF13738 Pyr_redox_3: Pyridine 99.7 2.4E-17 5.2E-22 137.2 7.0 184 107-311 1-195 (203)
44 KOG4716|consensus 99.7 4.3E-17 9.3E-22 138.8 3.5 194 19-225 207-411 (503)
45 COG3634 AhpF Alkyl hydroperoxi 99.7 2.7E-16 5.8E-21 134.5 7.8 158 103-311 211-382 (520)
46 PRK10262 thioredoxin reductase 99.6 1E-14 2.2E-19 130.1 17.7 166 100-311 3-174 (321)
47 PRK06115 dihydrolipoamide dehy 99.6 3.9E-16 8.5E-21 145.8 8.6 188 20-223 184-377 (466)
48 TIGR01292 TRX_reduct thioredox 99.6 1.6E-14 3.4E-19 127.3 16.9 163 104-311 1-169 (300)
49 PRK15317 alkyl hydroperoxide r 99.6 3.8E-15 8.2E-20 140.9 13.3 164 101-311 209-379 (517)
50 COG1252 Ndh NADH dehydrogenase 99.6 2.8E-15 6.1E-20 134.4 11.0 144 20-175 165-327 (405)
51 TIGR03143 AhpF_homolog putativ 99.6 4.6E-15 1E-19 141.3 12.8 162 103-311 4-171 (555)
52 PLN02546 glutathione reductase 99.6 2.2E-15 4.8E-20 142.5 10.3 182 20-220 262-450 (558)
53 TIGR01423 trypano_reduc trypan 99.6 6.5E-15 1.4E-19 137.7 12.4 143 20-175 197-348 (486)
54 TIGR01421 gluta_reduc_1 glutat 99.6 7.2E-15 1.6E-19 136.7 12.1 167 20-203 176-348 (450)
55 PTZ00058 glutathione reductase 99.6 8.1E-15 1.8E-19 138.7 12.1 149 20-175 247-429 (561)
56 TIGR03140 AhpF alkyl hydropero 99.6 1.3E-14 2.9E-19 137.1 13.4 164 101-311 210-380 (515)
57 PRK05249 soluble pyridine nucl 99.6 4.8E-15 1E-19 138.6 10.1 182 20-222 185-373 (461)
58 PLN02507 glutathione reductase 99.6 9.8E-15 2.1E-19 137.2 11.9 142 20-175 213-360 (499)
59 PRK06467 dihydrolipoamide dehy 99.6 3.9E-15 8.5E-20 139.2 8.3 187 20-224 184-377 (471)
60 PRK07845 flavoprotein disulfid 99.6 6.5E-15 1.4E-19 137.6 9.1 182 20-221 187-375 (466)
61 TIGR01438 TGR thioredoxin and 99.6 1.8E-14 4E-19 134.9 12.0 146 20-175 190-341 (484)
62 PRK14727 putative mercuric red 99.6 7.9E-15 1.7E-19 137.6 9.3 183 20-224 198-386 (479)
63 PF13434 K_oxygenase: L-lysine 99.6 3.5E-15 7.5E-20 133.2 6.3 195 103-311 2-220 (341)
64 PRK07846 mycothione reductase; 99.5 1.2E-14 2.6E-19 135.2 8.3 184 20-223 176-366 (451)
65 PRK06912 acoL dihydrolipoamide 99.5 2E-14 4.2E-19 134.3 8.9 183 20-222 180-368 (458)
66 PRK14694 putative mercuric red 99.5 2.1E-14 4.5E-19 134.4 9.0 182 20-223 188-374 (468)
67 PRK06327 dihydrolipoamide dehy 99.5 2.4E-14 5.1E-19 134.3 9.2 188 20-224 193-387 (475)
68 PRK06370 mercuric reductase; V 99.5 2.1E-14 4.6E-19 134.3 8.8 188 20-224 181-375 (463)
69 PRK06116 glutathione reductase 99.5 6.7E-14 1.4E-18 130.5 12.1 181 20-218 177-364 (450)
70 TIGR01424 gluta_reduc_2 glutat 99.5 6.1E-14 1.3E-18 130.5 11.7 142 20-175 176-323 (446)
71 PRK13748 putative mercuric red 99.5 2.1E-14 4.5E-19 137.6 8.7 181 20-222 280-466 (561)
72 PRK08010 pyridine nucleotide-d 99.5 2.3E-14 5E-19 133.2 8.6 141 20-175 168-314 (441)
73 PRK07818 dihydrolipoamide dehy 99.5 8.3E-14 1.8E-18 130.4 12.2 185 20-222 182-376 (466)
74 PTZ00318 NADH dehydrogenase-li 99.5 8.2E-14 1.8E-18 128.8 11.8 143 20-175 183-343 (424)
75 PRK06416 dihydrolipoamide dehy 99.5 2.2E-13 4.8E-18 127.4 13.1 145 20-175 182-331 (462)
76 PRK13512 coenzyme A disulfide 99.5 1.7E-13 3.6E-18 127.3 12.0 143 20-175 158-309 (438)
77 PRK05976 dihydrolipoamide dehy 99.5 5.5E-14 1.2E-18 131.8 8.8 188 20-224 190-384 (472)
78 PRK09754 phenylpropionate diox 99.5 3.5E-13 7.5E-18 123.6 13.7 144 21-175 155-306 (396)
79 TIGR02053 MerA mercuric reduct 99.5 2.1E-13 4.5E-18 127.7 11.5 187 20-223 176-369 (463)
80 PTZ00052 thioredoxin reductase 99.5 2.3E-13 5E-18 128.1 11.9 175 20-215 192-373 (499)
81 PRK04965 NADH:flavorubredoxin 99.5 5E-13 1.1E-17 121.8 13.5 145 20-175 151-299 (377)
82 PRK14989 nitrite reductase sub 99.5 4.1E-13 8.9E-18 132.7 13.2 147 20-175 155-307 (847)
83 PTZ00153 lipoamide dehydrogena 99.5 4.7E-13 1E-17 128.5 13.2 151 20-175 322-492 (659)
84 TIGR03452 mycothione_red mycot 99.5 3.6E-13 7.8E-18 125.4 11.9 141 20-175 179-325 (452)
85 PRK09754 phenylpropionate diox 99.5 7E-13 1.5E-17 121.6 12.9 97 213-311 68-172 (396)
86 PRK06292 dihydrolipoamide dehy 99.5 5.3E-13 1.1E-17 124.9 11.9 144 20-175 179-328 (460)
87 PRK14989 nitrite reductase sub 99.5 3.8E-13 8.3E-18 132.9 11.3 98 212-311 68-173 (847)
88 PRK04965 NADH:flavorubredoxin 99.4 7.6E-13 1.6E-17 120.6 12.1 95 213-311 68-169 (377)
89 TIGR02374 nitri_red_nirB nitri 99.4 4.8E-13 1E-17 132.1 10.2 97 213-311 64-168 (785)
90 PRK12831 putative oxidoreducta 99.4 9.4E-13 2E-17 122.8 10.5 155 102-311 139-309 (464)
91 TIGR03169 Nterm_to_SelD pyridi 99.4 1.4E-12 3.1E-17 118.3 10.9 91 212-304 63-166 (364)
92 KOG0404|consensus 99.4 1.6E-12 3.4E-17 105.2 9.4 171 100-311 5-185 (322)
93 TIGR02374 nitri_red_nirB nitri 99.4 2.7E-12 5.8E-17 126.9 12.8 145 20-175 150-298 (785)
94 PRK07251 pyridine nucleotide-d 99.4 2.1E-12 4.6E-17 120.0 11.5 121 20-150 167-293 (438)
95 TIGR01350 lipoamide_DH dihydro 99.4 2.8E-12 6.1E-17 120.0 12.1 144 20-175 180-329 (461)
96 PTZ00318 NADH dehydrogenase-li 99.4 4E-12 8.8E-17 117.5 12.8 152 103-304 10-194 (424)
97 PRK09564 coenzyme A disulfide 99.4 4E-12 8.7E-17 118.4 12.9 146 20-175 159-314 (444)
98 PRK09564 coenzyme A disulfide 99.4 2E-12 4.4E-17 120.4 10.9 99 213-311 66-177 (444)
99 PRK12779 putative bifunctional 99.4 3.9E-12 8.6E-17 127.0 12.9 152 103-311 306-475 (944)
100 PRK13512 coenzyme A disulfide 99.4 4.2E-12 9.1E-17 117.9 11.9 98 214-311 69-176 (438)
101 KOG2495|consensus 99.4 3E-12 6.5E-17 112.9 9.7 147 18-175 226-392 (491)
102 PF00070 Pyr_redox: Pyridine n 99.4 7E-12 1.5E-16 88.0 9.5 72 19-91 8-80 (80)
103 TIGR01316 gltA glutamate synth 99.4 4E-12 8.7E-17 118.3 10.7 152 102-311 132-300 (449)
104 TIGR03385 CoA_CoA_reduc CoA-di 99.3 9.9E-12 2.1E-16 115.2 12.1 145 20-175 147-301 (427)
105 COG1251 NirB NAD(P)H-nitrite r 99.3 1.6E-11 3.5E-16 115.1 12.0 145 21-175 156-303 (793)
106 PRK09853 putative selenate red 99.3 3E-11 6.6E-16 119.6 14.2 150 103-311 539-698 (1019)
107 PRK12778 putative bifunctional 99.3 1.1E-11 2.3E-16 122.5 11.0 153 102-311 430-599 (752)
108 PRK10262 thioredoxin reductase 99.3 3.3E-11 7.2E-16 107.4 12.9 130 20-152 156-291 (321)
109 TIGR03169 Nterm_to_SelD pyridi 99.3 3.6E-11 7.8E-16 109.1 12.3 143 20-175 155-306 (364)
110 KOG1336|consensus 99.3 1.9E-11 4.2E-16 109.5 8.5 125 20-152 223-352 (478)
111 COG3486 IucD Lysine/ornithine 99.2 1.2E-10 2.6E-15 102.6 12.9 191 101-306 3-210 (436)
112 TIGR03315 Se_ygfK putative sel 99.2 1E-10 2.2E-15 116.3 13.7 150 103-311 537-696 (1012)
113 KOG1336|consensus 99.2 3.7E-11 8.1E-16 107.7 9.5 98 212-311 136-241 (478)
114 COG2081 Predicted flavoprotein 99.2 2.2E-10 4.8E-15 101.1 13.8 145 103-260 3-171 (408)
115 PRK11749 dihydropyrimidine deh 99.2 6.6E-11 1.4E-15 110.6 11.3 152 102-311 139-302 (457)
116 COG1252 Ndh NADH dehydrogenase 99.2 5.2E-11 1.1E-15 107.1 10.0 154 104-307 4-179 (405)
117 PRK12775 putative trifunctiona 99.2 5.4E-11 1.2E-15 119.9 11.2 153 103-311 430-600 (1006)
118 TIGR01372 soxA sarcosine oxida 99.2 2.4E-10 5.3E-15 115.6 15.8 162 102-311 162-346 (985)
119 PRK12770 putative glutamate sy 99.2 2E-10 4.4E-15 103.7 12.8 160 102-311 17-201 (352)
120 TIGR03140 AhpF alkyl hydropero 99.2 2.7E-10 5.9E-15 107.9 12.6 124 20-152 362-489 (515)
121 PRK12810 gltD glutamate syntha 99.2 3.8E-10 8.2E-15 105.8 13.0 152 102-311 142-310 (471)
122 PLN02852 ferredoxin-NADP+ redu 99.1 5E-10 1.1E-14 104.2 12.8 146 102-304 25-187 (491)
123 TIGR01316 gltA glutamate synth 99.1 5.8E-10 1.2E-14 103.9 13.3 145 20-174 282-444 (449)
124 TIGR01317 GOGAT_sm_gam glutama 99.1 7.6E-10 1.6E-14 104.0 12.9 151 103-311 143-312 (485)
125 PRK12814 putative NADPH-depend 99.1 5.6E-10 1.2E-14 108.4 11.3 151 103-311 193-352 (652)
126 TIGR01292 TRX_reduct thioredox 99.1 3.9E-09 8.4E-14 93.0 13.9 141 20-173 151-294 (300)
127 PRK12831 putative oxidoreducta 99.1 1.9E-09 4.2E-14 100.7 12.4 145 20-174 291-455 (464)
128 PRK13984 putative oxidoreducta 99.1 1.2E-09 2.6E-14 105.6 11.4 145 103-305 283-440 (604)
129 PRK15317 alkyl hydroperoxide r 99.0 2.7E-09 5.8E-14 101.2 13.1 125 20-152 361-488 (517)
130 COG1251 NirB NAD(P)H-nitrite r 99.0 8.3E-10 1.8E-14 103.8 9.3 100 211-312 67-174 (793)
131 COG0446 HcaD Uncharacterized N 99.0 1.9E-09 4.2E-14 99.1 11.0 126 20-153 146-280 (415)
132 COG0492 TrxB Thioredoxin reduc 99.0 3.4E-09 7.4E-14 93.0 11.7 125 19-154 152-279 (305)
133 PF07992 Pyr_redox_2: Pyridine 99.0 8.2E-10 1.8E-14 91.5 7.3 53 239-291 103-160 (201)
134 PRK09897 hypothetical protein; 99.0 3.4E-08 7.4E-13 93.1 18.6 195 105-305 3-213 (534)
135 PRK11749 dihydropyrimidine deh 99.0 6.8E-09 1.5E-13 97.1 13.0 145 20-174 283-446 (457)
136 PRK12769 putative oxidoreducta 99.0 7.3E-09 1.6E-13 101.0 12.9 151 103-311 327-497 (654)
137 TIGR01318 gltD_gamma_fam gluta 98.9 1.6E-08 3.4E-13 94.7 12.9 151 103-311 141-311 (467)
138 PRK06567 putative bifunctional 98.9 5.6E-09 1.2E-13 102.7 9.1 34 103-136 383-416 (1028)
139 KOG2495|consensus 98.9 5.8E-09 1.3E-13 92.4 8.2 157 102-304 54-239 (491)
140 TIGR03143 AhpF_homolog putativ 98.9 5E-08 1.1E-12 93.3 14.3 123 20-151 153-284 (555)
141 PRK12770 putative glutamate sy 98.9 1.5E-08 3.2E-13 91.6 10.1 128 20-151 182-326 (352)
142 PRK12778 putative bifunctional 98.8 3.4E-08 7.4E-13 97.8 12.0 145 20-174 580-744 (752)
143 PRK12809 putative oxidoreducta 98.8 4.5E-08 9.8E-13 95.1 12.6 151 103-311 310-480 (639)
144 PF03486 HI0933_like: HI0933-l 98.8 8.3E-09 1.8E-13 94.3 5.6 144 104-258 1-166 (409)
145 TIGR03385 CoA_CoA_reduc CoA-di 98.8 3E-08 6.4E-13 92.1 9.4 96 214-311 55-165 (427)
146 TIGR01318 gltD_gamma_fam gluta 98.8 8.8E-08 1.9E-12 89.7 12.3 145 20-174 292-460 (467)
147 KOG0404|consensus 98.8 2.2E-08 4.8E-13 81.5 7.0 127 18-151 165-294 (322)
148 PRK12814 putative NADPH-depend 98.7 7.7E-08 1.7E-12 93.6 11.6 144 20-174 333-495 (652)
149 PRK12769 putative oxidoreducta 98.7 1.4E-07 3.1E-12 92.0 11.9 145 20-174 478-646 (654)
150 COG4529 Uncharacterized protei 98.7 9.1E-07 2E-11 80.4 15.5 198 104-307 2-220 (474)
151 COG0493 GltD NADPH-dependent g 98.7 1.9E-07 4.1E-12 86.3 10.9 150 104-311 124-291 (457)
152 PRK12779 putative bifunctional 98.7 3.2E-07 6.9E-12 92.3 13.3 146 20-175 457-622 (944)
153 PRK09853 putative selenate red 98.6 2.8E-07 6.1E-12 91.9 12.4 144 20-175 678-837 (1019)
154 PRK12775 putative trifunctiona 98.6 6.3E-07 1.4E-11 90.9 13.3 145 20-174 581-749 (1006)
155 PRK12810 gltD glutamate syntha 98.6 2.7E-07 5.9E-12 86.6 10.0 147 20-173 291-458 (471)
156 PRK13984 putative oxidoreducta 98.6 8.3E-07 1.8E-11 86.0 13.0 126 20-151 428-579 (604)
157 PRK12809 putative oxidoreducta 98.6 6.3E-07 1.4E-11 87.2 12.2 144 20-173 461-628 (639)
158 PLN02463 lycopene beta cyclase 98.6 5E-07 1.1E-11 83.8 10.8 140 102-260 27-171 (447)
159 PRK05329 anaerobic glycerol-3- 98.5 1.8E-07 3.8E-12 85.9 7.3 85 20-113 225-316 (422)
160 PRK12771 putative glutamate sy 98.5 1.3E-06 2.8E-11 84.0 13.3 145 20-174 277-438 (564)
161 TIGR03315 Se_ygfK putative sel 98.5 1E-06 2.3E-11 88.3 12.8 143 20-175 676-835 (1012)
162 PRK06069 sdhA succinate dehydr 98.5 1.7E-06 3.6E-11 83.3 13.4 51 100-150 2-55 (577)
163 PRK09231 fumarate reductase fl 98.5 2.2E-06 4.7E-11 82.5 13.9 159 101-259 2-197 (582)
164 PRK06452 sdhA succinate dehydr 98.5 3.1E-06 6.7E-11 81.2 14.3 51 100-150 2-52 (566)
165 PLN00128 Succinate dehydrogena 98.5 4.8E-06 1E-10 80.7 15.3 158 101-258 48-250 (635)
166 PRK12771 putative glutamate sy 98.5 1.4E-06 3.1E-11 83.6 11.5 151 103-311 137-296 (564)
167 KOG0399|consensus 98.5 7.4E-07 1.6E-11 87.4 9.2 149 103-309 1785-1951(2142)
168 PF13454 NAD_binding_9: FAD-NA 98.4 3.1E-06 6.6E-11 67.3 11.0 142 107-256 1-155 (156)
169 PTZ00139 Succinate dehydrogena 98.4 6.1E-06 1.3E-10 79.9 14.9 158 101-258 27-229 (617)
170 PRK08626 fumarate reductase fl 98.4 3.6E-06 7.8E-11 82.0 13.4 49 100-148 2-50 (657)
171 TIGR01176 fum_red_Fp fumarate 98.4 7.2E-06 1.6E-10 78.8 14.4 158 102-259 2-196 (580)
172 PRK08205 sdhA succinate dehydr 98.4 6.2E-06 1.3E-10 79.5 13.9 49 101-150 3-51 (583)
173 PRK09078 sdhA succinate dehydr 98.4 8E-06 1.7E-10 78.9 14.6 50 100-149 9-58 (598)
174 PRK07803 sdhA succinate dehydr 98.4 6.6E-06 1.4E-10 79.8 14.1 50 100-149 5-54 (626)
175 PRK08958 sdhA succinate dehydr 98.4 8.1E-06 1.7E-10 78.7 14.2 157 102-258 6-206 (588)
176 TIGR02023 BchP-ChlP geranylger 98.4 1.6E-06 3.5E-11 79.4 8.8 32 104-135 1-32 (388)
177 PRK07057 sdhA succinate dehydr 98.3 1.2E-05 2.6E-10 77.6 14.7 51 99-149 8-58 (591)
178 COG0446 HcaD Uncharacterized N 98.3 1.8E-06 4E-11 79.3 8.8 92 215-311 65-164 (415)
179 TIGR01317 GOGAT_sm_gam glutama 98.3 5.1E-06 1.1E-10 78.3 11.8 150 20-174 293-473 (485)
180 PF05834 Lycopene_cycl: Lycope 98.3 1.5E-06 3.3E-11 79.1 8.0 146 105-268 1-152 (374)
181 PRK06481 fumarate reductase fl 98.3 6E-06 1.3E-10 78.2 12.2 38 101-138 59-96 (506)
182 COG3634 AhpF Alkyl hydroperoxi 98.3 2.8E-06 6E-11 73.8 8.9 121 19-150 363-489 (520)
183 TIGR02028 ChlP geranylgeranyl 98.3 1.5E-06 3.3E-11 79.8 7.9 148 104-262 1-164 (398)
184 PRK05945 sdhA succinate dehydr 98.3 8.3E-06 1.8E-10 78.5 13.3 48 102-149 2-51 (575)
185 PLN00093 geranylgeranyl diphos 98.3 4E-06 8.7E-11 78.1 10.6 37 100-136 36-72 (450)
186 PRK07804 L-aspartate oxidase; 98.3 1.2E-05 2.6E-10 76.8 14.0 49 100-148 13-61 (541)
187 PRK06263 sdhA succinate dehydr 98.3 1E-05 2.2E-10 77.5 13.4 37 100-137 4-40 (543)
188 PRK04176 ribulose-1,5-biphosph 98.3 1E-05 2.2E-10 69.6 12.1 36 101-136 23-58 (257)
189 TIGR00551 nadB L-aspartate oxi 98.3 1.3E-05 2.8E-10 75.7 13.8 156 103-259 2-190 (488)
190 KOG1346|consensus 98.3 8.9E-07 1.9E-11 78.5 5.4 91 214-306 268-370 (659)
191 COG0644 FixC Dehydrogenases (f 98.3 1.4E-06 3.1E-11 80.0 6.9 41 102-142 2-42 (396)
192 TIGR01790 carotene-cycl lycope 98.3 4.5E-06 9.8E-11 76.4 10.2 134 105-258 1-141 (388)
193 PRK07573 sdhA succinate dehydr 98.3 2.4E-05 5.2E-10 76.1 15.3 37 100-136 32-68 (640)
194 PLN02815 L-aspartate oxidase 98.3 1.3E-05 2.8E-10 77.1 13.1 48 100-148 26-73 (594)
195 PRK08401 L-aspartate oxidase; 98.3 1.5E-05 3.2E-10 74.8 13.0 151 104-260 2-177 (466)
196 PRK08275 putative oxidoreducta 98.3 1.6E-05 3.5E-10 76.2 13.5 38 100-137 6-45 (554)
197 TIGR01812 sdhA_frdA_Gneg succi 98.2 2.5E-05 5.4E-10 75.2 13.9 44 105-148 1-44 (566)
198 TIGR02032 GG-red-SF geranylger 98.2 3.9E-06 8.5E-11 73.5 7.4 34 104-137 1-34 (295)
199 PRK10157 putative oxidoreducta 98.2 1.6E-06 3.5E-11 80.4 5.0 36 103-138 5-40 (428)
200 PRK06854 adenylylsulfate reduc 98.2 2.8E-05 6.2E-10 75.2 13.7 38 100-137 8-47 (608)
201 PRK10015 oxidoreductase; Provi 98.2 2.6E-06 5.6E-11 79.0 6.3 37 102-138 4-40 (429)
202 PLN02697 lycopene epsilon cycl 98.2 1.1E-05 2.4E-10 76.2 10.5 139 102-258 107-248 (529)
203 PTZ00188 adrenodoxin reductase 98.2 1.1E-05 2.4E-10 74.7 10.1 34 103-136 39-73 (506)
204 PRK08274 tricarballylate dehyd 98.2 1.6E-05 3.5E-10 74.7 11.5 35 102-136 3-37 (466)
205 TIGR00292 thiazole biosynthesi 98.2 2.3E-05 5.1E-10 67.3 11.5 37 101-137 19-55 (254)
206 PRK08641 sdhA succinate dehydr 98.2 4.8E-05 1E-09 73.4 14.9 47 103-149 3-49 (589)
207 PRK05192 tRNA uridine 5-carbox 98.2 2.1E-05 4.6E-10 74.8 12.0 33 103-135 4-36 (618)
208 KOG2755|consensus 98.2 3.8E-05 8.2E-10 64.4 12.0 72 231-305 79-156 (334)
209 PRK06175 L-aspartate oxidase; 98.2 2.5E-05 5.4E-10 72.6 12.3 48 102-150 3-50 (433)
210 PRK08071 L-aspartate oxidase; 98.2 4E-05 8.8E-10 72.7 13.9 46 103-149 3-48 (510)
211 TIGR01813 flavo_cyto_c flavocy 98.2 1.7E-05 3.8E-10 73.9 11.1 34 105-138 1-35 (439)
212 PF00890 FAD_binding_2: FAD bi 98.2 1.7E-05 3.6E-10 73.4 10.9 33 105-137 1-33 (417)
213 PRK06834 hypothetical protein; 98.2 2.8E-05 6.2E-10 73.3 12.3 146 103-261 3-159 (488)
214 PRK06847 hypothetical protein; 98.1 1.6E-05 3.5E-10 72.4 10.3 34 103-136 4-37 (375)
215 KOG1800|consensus 98.1 2.1E-05 4.5E-10 69.3 9.9 143 105-304 22-180 (468)
216 PRK11445 putative oxidoreducta 98.1 3.5E-05 7.6E-10 69.6 11.8 33 104-137 2-34 (351)
217 PRK09077 L-aspartate oxidase; 98.1 7.3E-05 1.6E-09 71.4 14.4 48 101-149 6-53 (536)
218 PTZ00306 NADH-dependent fumara 98.1 5.3E-05 1.2E-09 78.5 13.9 38 100-137 406-443 (1167)
219 TIGR00275 flavoprotein, HI0933 98.1 6.6E-05 1.4E-09 69.0 13.2 32 107-138 1-32 (400)
220 PLN02172 flavin-containing mon 98.1 0.0004 8.7E-09 65.0 18.2 59 50-113 111-171 (461)
221 PRK07512 L-aspartate oxidase; 98.1 5.9E-05 1.3E-09 71.6 12.7 49 99-149 5-54 (513)
222 PRK13800 putative oxidoreducta 98.1 0.00012 2.5E-09 74.2 15.5 38 100-137 10-47 (897)
223 PF01134 GIDA: Glucose inhibit 98.1 4.5E-05 9.9E-10 68.8 11.1 129 105-256 1-150 (392)
224 PRK07190 hypothetical protein; 98.0 2.8E-05 6.1E-10 73.3 10.0 36 102-137 4-39 (487)
225 PF01266 DAO: FAD dependent ox 98.0 0.00023 5E-09 63.9 15.4 32 105-136 1-32 (358)
226 PRK07608 ubiquinone biosynthes 98.0 2.5E-05 5.5E-10 71.5 9.1 35 103-137 5-39 (388)
227 COG0029 NadB Aspartate oxidase 98.0 5.2E-05 1.1E-09 69.3 10.8 150 105-256 9-194 (518)
228 PRK07121 hypothetical protein; 98.0 9.7E-05 2.1E-09 69.9 13.2 37 101-137 18-54 (492)
229 KOG0399|consensus 98.0 1.1E-05 2.3E-10 79.5 6.6 125 20-162 1795-1946(2142)
230 PRK07395 L-aspartate oxidase; 98.0 5.1E-05 1.1E-09 72.6 11.3 48 100-148 6-53 (553)
231 COG1635 THI4 Ribulose 1,5-bisp 98.0 1.7E-05 3.7E-10 64.8 6.5 36 101-136 28-63 (262)
232 TIGR01811 sdhA_Bsu succinate d 98.0 0.00015 3.2E-09 70.2 14.2 43 106-148 1-44 (603)
233 PRK08773 2-octaprenyl-3-methyl 98.0 4.2E-05 9.1E-10 70.2 9.9 36 101-136 4-39 (392)
234 PRK06184 hypothetical protein; 98.0 4.2E-05 9.2E-10 72.6 10.1 35 103-137 3-37 (502)
235 TIGR00136 gidA glucose-inhibit 98.0 0.00014 2.9E-09 69.4 13.1 32 104-135 1-32 (617)
236 PRK07494 2-octaprenyl-6-methox 98.0 4.1E-05 8.9E-10 70.1 9.5 37 101-137 5-41 (388)
237 PRK11728 hydroxyglutarate oxid 98.0 0.00047 1E-08 63.3 16.2 34 103-136 2-37 (393)
238 PRK08244 hypothetical protein; 97.9 5.7E-05 1.2E-09 71.5 10.0 35 103-137 2-36 (493)
239 PRK07364 2-octaprenyl-6-methox 97.9 6.3E-05 1.4E-09 69.5 10.1 38 100-137 15-52 (415)
240 PRK12845 3-ketosteroid-delta-1 97.9 0.0002 4.4E-09 68.6 13.4 36 101-137 14-49 (564)
241 PF01494 FAD_binding_3: FAD bi 97.9 1.4E-05 3E-10 71.8 5.1 36 103-138 1-36 (356)
242 PRK06183 mhpA 3-(3-hydroxyphen 97.9 9.8E-05 2.1E-09 70.7 10.6 36 101-136 8-43 (538)
243 TIGR01372 soxA sarcosine oxida 97.9 0.00022 4.7E-09 73.0 13.6 115 20-150 327-448 (985)
244 PRK06126 hypothetical protein; 97.9 0.00014 3.1E-09 69.7 11.7 37 100-136 4-40 (545)
245 PRK09126 hypothetical protein; 97.9 0.0002 4.2E-09 65.7 12.2 35 103-137 3-37 (392)
246 PF12831 FAD_oxidored: FAD dep 97.9 2.5E-05 5.4E-10 72.5 6.2 141 105-255 1-147 (428)
247 PRK08020 ubiF 2-octaprenyl-3-m 97.9 0.00014 2.9E-09 66.8 11.1 35 102-136 4-38 (391)
248 COG1053 SdhA Succinate dehydro 97.9 0.00052 1.1E-08 65.5 15.0 52 100-151 3-54 (562)
249 TIGR01789 lycopene_cycl lycope 97.8 7.7E-05 1.7E-09 67.9 8.4 40 105-144 1-42 (370)
250 PLN02661 Putative thiazole syn 97.8 0.00033 7.1E-09 62.5 11.9 37 100-136 89-126 (357)
251 PRK12834 putative FAD-binding 97.8 0.00045 9.7E-09 66.3 13.7 35 102-136 3-37 (549)
252 TIGR02061 aprA adenosine phosp 97.8 0.00041 8.8E-09 67.1 13.2 42 105-147 1-46 (614)
253 PRK12835 3-ketosteroid-delta-1 97.8 0.00037 8E-09 67.2 12.8 38 101-138 9-46 (584)
254 TIGR01988 Ubi-OHases Ubiquinon 97.8 0.00015 3.3E-09 66.1 9.8 33 105-137 1-33 (385)
255 PRK05714 2-octaprenyl-3-methyl 97.8 0.00013 2.9E-09 67.2 9.5 34 103-136 2-35 (405)
256 PRK08849 2-octaprenyl-3-methyl 97.8 0.00014 3E-09 66.6 9.3 34 103-136 3-36 (384)
257 PRK07333 2-octaprenyl-6-methox 97.8 2.9E-05 6.4E-10 71.4 4.9 33 104-136 2-36 (403)
258 TIGR03364 HpnW_proposed FAD de 97.7 0.0019 4.2E-08 58.6 16.3 33 104-136 1-33 (365)
259 PLN02852 ferredoxin-NADP+ redu 97.7 0.00073 1.6E-08 63.4 13.6 90 63-152 288-398 (491)
260 PF07992 Pyr_redox_2: Pyridine 97.7 0.0002 4.3E-09 59.0 9.0 127 20-152 9-199 (201)
261 PRK12842 putative succinate de 97.7 0.001 2.2E-08 64.3 14.6 38 100-137 6-43 (574)
262 TIGR02360 pbenz_hydroxyl 4-hyd 97.7 0.00028 6E-09 64.8 10.4 35 103-137 2-36 (390)
263 PRK08243 4-hydroxybenzoate 3-m 97.7 0.0003 6.6E-09 64.5 10.6 35 103-137 2-36 (392)
264 PRK08013 oxidoreductase; Provi 97.7 0.00019 4.1E-09 66.1 9.2 35 103-137 3-37 (400)
265 TIGR03329 Phn_aa_oxid putative 97.7 0.0014 3E-08 61.5 15.0 37 100-136 21-59 (460)
266 PF01946 Thi4: Thi4 family; PD 97.7 0.00036 7.8E-09 57.4 9.2 36 101-136 15-50 (230)
267 COG0654 UbiH 2-polyprenyl-6-me 97.7 5.3E-05 1.2E-09 69.4 5.0 33 103-135 2-34 (387)
268 PRK12837 3-ketosteroid-delta-1 97.7 0.0013 2.8E-08 62.6 14.5 35 102-137 6-40 (513)
269 TIGR01984 UbiH 2-polyprenyl-6- 97.7 0.00018 3.9E-09 65.7 8.4 33 105-137 1-34 (382)
270 PRK12839 hypothetical protein; 97.7 0.0011 2.3E-08 63.9 13.8 38 100-137 5-42 (572)
271 TIGR01989 COQ6 Ubiquinone bios 97.7 0.00018 3.8E-09 67.1 8.3 32 104-135 1-36 (437)
272 PRK08163 salicylate hydroxylas 97.7 0.00055 1.2E-08 62.8 11.4 35 103-137 4-38 (396)
273 PRK07588 hypothetical protein; 97.6 0.00026 5.7E-09 64.9 8.9 33 105-137 2-34 (391)
274 PLN02985 squalene monooxygenas 97.6 0.00013 2.8E-09 69.3 6.7 37 100-136 40-76 (514)
275 PRK06753 hypothetical protein; 97.6 0.00033 7.1E-09 63.8 9.2 33 105-137 2-34 (373)
276 PRK06617 2-octaprenyl-6-methox 97.6 0.0003 6.4E-09 64.2 8.9 32 104-135 2-33 (374)
277 PRK07843 3-ketosteroid-delta-1 97.6 0.0012 2.7E-08 63.3 13.1 38 100-137 4-41 (557)
278 TIGR01377 soxA_mon sarcosine o 97.6 0.0047 1E-07 56.3 16.4 33 104-136 1-33 (380)
279 COG0445 GidA Flavin-dependent 97.6 0.00015 3.3E-09 67.0 6.3 33 103-135 4-36 (621)
280 PRK07045 putative monooxygenas 97.5 0.00024 5.3E-09 65.0 7.4 37 102-138 4-40 (388)
281 PRK06185 hypothetical protein; 97.5 0.00017 3.7E-09 66.5 6.3 37 100-136 3-39 (407)
282 PRK06134 putative FAD-binding 97.5 0.0027 5.9E-08 61.3 14.7 36 101-136 10-45 (581)
283 PRK05732 2-octaprenyl-6-methox 97.5 0.00044 9.5E-09 63.4 8.9 33 103-135 3-38 (395)
284 PRK12409 D-amino acid dehydrog 97.5 0.0062 1.3E-07 56.2 16.5 33 104-136 2-34 (410)
285 PRK08132 FAD-dependent oxidore 97.5 0.00063 1.4E-08 65.3 10.1 37 101-137 21-57 (547)
286 PRK12844 3-ketosteroid-delta-1 97.5 0.0055 1.2E-07 58.9 16.3 35 102-136 5-39 (557)
287 KOG2820|consensus 97.5 0.0038 8.2E-08 54.6 13.4 35 102-136 6-40 (399)
288 PRK08850 2-octaprenyl-6-methox 97.5 0.00051 1.1E-08 63.3 8.8 33 103-135 4-36 (405)
289 PRK11259 solA N-methyltryptoph 97.5 0.0036 7.7E-08 57.0 14.2 34 103-136 3-36 (376)
290 PF00743 FMO-like: Flavin-bind 97.5 0.0054 1.2E-07 58.4 15.5 114 20-133 11-213 (531)
291 PTZ00367 squalene epoxidase; P 97.5 0.00015 3.2E-09 69.4 5.0 36 101-136 31-66 (567)
292 PRK01747 mnmC bifunctional tRN 97.5 0.0065 1.4E-07 59.8 16.5 34 103-136 260-293 (662)
293 PRK12266 glpD glycerol-3-phosp 97.4 0.0087 1.9E-07 56.9 16.1 35 102-136 5-39 (508)
294 COG0665 DadA Glycine/D-amino a 97.4 0.0075 1.6E-07 55.0 15.1 36 102-137 3-38 (387)
295 PRK12843 putative FAD-binding 97.4 0.0055 1.2E-07 59.2 14.6 36 101-136 14-49 (578)
296 PF04820 Trp_halogenase: Trypt 97.4 0.0013 2.8E-08 61.5 10.0 55 204-260 155-213 (454)
297 COG2081 Predicted flavoprotein 97.4 0.0012 2.7E-08 59.0 9.0 54 50-112 111-164 (408)
298 PRK07236 hypothetical protein; 97.3 0.0018 4E-08 59.3 10.4 34 103-136 6-39 (386)
299 PTZ00383 malate:quinone oxidor 97.3 0.0065 1.4E-07 57.4 13.7 37 100-136 42-80 (497)
300 PRK00711 D-amino acid dehydrog 97.3 0.0089 1.9E-07 55.2 14.6 32 105-136 2-33 (416)
301 PRK08294 phenol 2-monooxygenas 97.2 0.0029 6.3E-08 61.7 11.1 35 102-136 31-66 (634)
302 TIGR02485 CobZ_N-term precorri 97.2 0.0026 5.5E-08 59.3 10.3 30 108-137 1-30 (432)
303 PRK05868 hypothetical protein; 97.2 0.0021 4.5E-08 58.6 9.2 33 105-137 3-35 (372)
304 PRK13369 glycerol-3-phosphate 97.2 0.015 3.2E-07 55.3 15.2 36 101-136 4-39 (502)
305 PF03486 HI0933_like: HI0933-l 97.2 0.0016 3.4E-08 59.9 8.2 56 49-112 108-163 (409)
306 COG1148 HdrA Heterodisulfide r 97.2 0.02 4.4E-07 52.6 14.6 60 19-78 133-206 (622)
307 PRK11101 glpA sn-glycerol-3-ph 97.2 0.038 8.1E-07 53.1 17.7 36 101-136 4-39 (546)
308 KOG2311|consensus 97.2 0.0025 5.4E-08 58.2 8.8 139 102-255 27-183 (679)
309 PRK06475 salicylate hydroxylas 97.1 0.0063 1.4E-07 56.0 10.9 33 104-136 3-35 (400)
310 PRK06996 hypothetical protein; 97.0 0.0022 4.7E-08 59.0 7.5 37 100-136 8-48 (398)
311 KOG1346|consensus 97.0 0.0014 2.9E-08 58.8 5.7 120 21-150 358-487 (659)
312 TIGR01373 soxB sarcosine oxida 97.0 0.032 7E-07 51.4 14.9 36 101-136 28-65 (407)
313 COG0579 Predicted dehydrogenas 96.9 0.053 1.1E-06 49.9 15.4 34 103-136 3-38 (429)
314 PF00070 Pyr_redox: Pyridine n 96.9 0.0011 2.4E-08 46.1 3.5 27 285-311 1-27 (80)
315 TIGR03219 salicylate_mono sali 96.9 0.0047 1E-07 57.1 8.7 32 105-136 2-34 (414)
316 KOG2404|consensus 96.9 0.0082 1.8E-07 52.3 9.3 36 105-140 11-46 (477)
317 PF13738 Pyr_redox_3: Pyridine 96.9 0.0045 9.8E-08 51.0 7.7 85 20-113 7-136 (203)
318 TIGR03862 flavo_PP4765 unchara 96.8 0.024 5.2E-07 51.5 12.5 54 204-258 87-141 (376)
319 KOG1298|consensus 96.8 0.0032 6.9E-08 56.0 6.0 37 100-136 42-78 (509)
320 PRK13339 malate:quinone oxidor 96.8 0.072 1.6E-06 50.3 15.4 33 102-134 5-39 (497)
321 KOG3851|consensus 96.7 0.0016 3.4E-08 56.5 3.8 46 219-266 108-153 (446)
322 PLN02927 antheraxanthin epoxid 96.7 0.0057 1.2E-07 59.5 7.6 35 102-136 80-114 (668)
323 TIGR02032 GG-red-SF geranylger 96.6 0.016 3.4E-07 50.6 9.4 88 20-115 10-148 (295)
324 PRK06847 hypothetical protein; 96.6 0.015 3.3E-07 52.9 9.5 56 50-114 107-162 (375)
325 KOG2853|consensus 96.4 0.068 1.5E-06 47.1 11.3 53 100-152 83-140 (509)
326 COG2509 Uncharacterized FAD-de 96.3 0.045 9.8E-07 50.0 10.6 91 27-125 148-240 (486)
327 KOG2614|consensus 96.3 0.045 9.8E-07 49.4 10.4 32 105-136 4-35 (420)
328 PRK07236 hypothetical protein; 96.1 0.017 3.7E-07 52.9 7.2 87 20-115 16-154 (386)
329 COG0493 GltD NADPH-dependent g 96.1 0.0074 1.6E-07 56.2 4.8 75 21-113 134-218 (457)
330 PRK04176 ribulose-1,5-biphosph 96.1 0.12 2.6E-06 44.5 11.7 99 21-119 36-177 (257)
331 PF13450 NAD_binding_8: NAD(P) 96.0 0.01 2.2E-07 39.8 3.7 30 108-137 1-30 (68)
332 COG0578 GlpA Glycerol-3-phosph 96.0 0.31 6.8E-06 46.1 14.7 36 101-136 10-45 (532)
333 TIGR00275 flavoprotein, HI0933 96.0 0.045 9.7E-07 50.4 9.2 80 24-113 77-158 (400)
334 COG1233 Phytoene dehydrogenase 95.9 0.01 2.2E-07 56.1 4.6 35 103-137 3-37 (487)
335 PF01494 FAD_binding_3: FAD bi 95.8 0.072 1.6E-06 47.6 9.8 62 50-115 111-172 (356)
336 PRK01438 murD UDP-N-acetylmura 95.8 0.044 9.6E-07 51.8 8.4 47 21-73 27-73 (480)
337 TIGR00292 thiazole biosynthesi 95.8 0.2 4.4E-06 43.0 11.7 100 21-120 32-175 (254)
338 PF01134 GIDA: Glucose inhibit 95.8 0.14 3E-06 46.6 11.1 99 21-128 10-186 (392)
339 PRK08255 salicylyl-CoA 5-hydro 95.8 0.0083 1.8E-07 59.9 3.6 32 105-136 2-35 (765)
340 PRK12842 putative succinate de 95.7 0.012 2.7E-07 56.8 4.6 87 21-113 170-273 (574)
341 PRK05675 sdhA succinate dehydr 95.4 0.31 6.8E-06 47.1 12.7 50 209-258 132-189 (570)
342 TIGR02733 desat_CrtD C-3',4' d 95.3 0.02 4.3E-07 54.3 4.4 34 104-137 2-35 (492)
343 TIGR02730 carot_isom carotene 95.3 0.021 4.6E-07 54.1 4.4 34 104-137 1-34 (493)
344 PRK08163 salicylate hydroxylas 95.2 0.14 3E-06 46.9 9.5 53 54-115 113-166 (396)
345 TIGR03862 flavo_PP4765 unchara 95.2 0.085 1.8E-06 47.9 7.7 79 24-113 58-139 (376)
346 PRK07843 3-ketosteroid-delta-1 95.1 0.024 5.2E-07 54.6 4.3 87 21-112 171-266 (557)
347 KOG0029|consensus 95.0 0.027 5.9E-07 53.1 4.3 36 102-137 14-49 (501)
348 PRK06834 hypothetical protein; 95.0 0.16 3.6E-06 48.0 9.5 52 53-113 103-154 (488)
349 PLN02463 lycopene beta cyclase 94.9 0.17 3.7E-06 47.3 9.2 85 21-115 39-169 (447)
350 TIGR00031 UDP-GALP_mutase UDP- 94.9 0.032 7E-07 50.8 4.3 32 104-135 2-33 (377)
351 PF06039 Mqo: Malate:quinone o 94.9 0.1 2.2E-06 48.1 7.3 68 50-120 181-249 (488)
352 COG0579 Predicted dehydrogenas 94.8 0.11 2.3E-06 48.0 7.3 66 50-122 153-218 (429)
353 PRK07588 hypothetical protein; 94.8 0.22 4.7E-06 45.6 9.6 42 63-113 115-156 (391)
354 PF13434 K_oxygenase: L-lysine 94.8 0.14 3.1E-06 46.0 8.1 48 63-113 292-339 (341)
355 KOG2415|consensus 94.8 0.033 7.2E-07 50.3 3.9 38 100-137 73-116 (621)
356 PLN02576 protoporphyrinogen ox 94.7 0.044 9.5E-07 52.0 4.9 37 101-137 10-47 (496)
357 KOG2852|consensus 94.7 0.67 1.4E-05 40.2 11.2 33 104-136 11-49 (380)
358 PRK08244 hypothetical protein; 94.7 0.24 5.2E-06 46.9 9.8 56 52-113 102-157 (493)
359 TIGR02734 crtI_fam phytoene de 94.6 0.036 7.8E-07 52.7 3.8 32 106-137 1-32 (502)
360 PRK02106 choline dehydrogenase 94.5 0.038 8.2E-07 53.3 4.0 36 101-136 3-39 (560)
361 COG3573 Predicted oxidoreducta 94.5 0.062 1.3E-06 47.3 4.7 48 102-149 4-53 (552)
362 PRK07608 ubiquinone biosynthes 94.5 0.21 4.5E-06 45.6 8.6 54 52-115 113-167 (388)
363 PRK07233 hypothetical protein; 94.5 0.048 1E-06 50.5 4.4 33 105-137 1-33 (434)
364 PRK07538 hypothetical protein; 94.4 0.043 9.3E-07 50.7 3.9 33 105-137 2-34 (413)
365 PRK06184 hypothetical protein; 94.4 0.26 5.7E-06 46.8 9.3 55 54-114 113-167 (502)
366 PRK07208 hypothetical protein; 94.3 0.059 1.3E-06 50.8 4.7 34 103-136 4-37 (479)
367 PF00732 GMC_oxred_N: GMC oxid 94.3 0.048 1E-06 47.8 3.8 33 104-136 1-34 (296)
368 COG0562 Glf UDP-galactopyranos 94.1 0.079 1.7E-06 46.3 4.5 33 104-136 2-34 (374)
369 PLN02268 probable polyamine ox 94.1 0.063 1.4E-06 49.9 4.3 33 105-137 2-34 (435)
370 KOG2844|consensus 94.1 1.6 3.5E-05 42.2 13.3 46 102-147 38-84 (856)
371 PRK07364 2-octaprenyl-6-methox 94.0 0.45 9.8E-06 43.9 9.9 55 55-115 126-181 (415)
372 PF06039 Mqo: Malate:quinone o 94.0 3.4 7.5E-05 38.4 15.0 34 103-136 3-38 (488)
373 PRK11883 protoporphyrinogen ox 93.9 0.065 1.4E-06 50.0 4.1 33 105-137 2-36 (451)
374 TIGR00562 proto_IX_ox protopor 93.9 0.067 1.4E-06 50.2 4.1 33 104-136 3-39 (462)
375 PRK05868 hypothetical protein; 93.9 0.39 8.6E-06 43.7 9.0 43 62-113 116-158 (372)
376 PTZ00363 rab-GDP dissociation 93.8 0.067 1.5E-06 49.8 3.9 34 103-136 4-37 (443)
377 COG0654 UbiH 2-polyprenyl-6-me 93.7 0.5 1.1E-05 43.3 9.4 55 50-113 104-160 (387)
378 COG3075 GlpB Anaerobic glycero 93.7 0.081 1.8E-06 46.4 3.8 35 103-137 2-36 (421)
379 PF13241 NAD_binding_7: Putati 93.5 0.087 1.9E-06 38.4 3.3 32 280-311 4-35 (103)
380 PRK05335 tRNA (uracil-5-)-meth 93.5 0.099 2.2E-06 48.1 4.3 33 104-136 3-35 (436)
381 PF13450 NAD_binding_8: NAD(P) 93.5 0.077 1.7E-06 35.5 2.7 24 288-311 1-24 (68)
382 PLN02697 lycopene epsilon cycl 93.4 0.61 1.3E-05 44.6 9.6 86 21-115 119-248 (529)
383 COG3380 Predicted NAD/FAD-depe 93.4 0.096 2.1E-06 44.8 3.7 32 105-136 3-34 (331)
384 PF01266 DAO: FAD dependent ox 93.4 0.26 5.6E-06 44.0 6.9 59 49-117 146-205 (358)
385 PRK05192 tRNA uridine 5-carbox 93.3 0.4 8.6E-06 46.4 8.2 22 21-42 15-36 (618)
386 PRK10157 putative oxidoreducta 93.1 1.1 2.5E-05 41.6 10.9 52 55-115 113-164 (428)
387 COG2509 Uncharacterized FAD-de 93.1 4.8 0.0001 37.3 14.2 46 209-256 179-228 (486)
388 TIGR01816 sdhA_forward succina 93.0 1.4 3.1E-05 42.5 11.6 139 122-260 1-183 (565)
389 TIGR01790 carotene-cycl lycope 92.9 0.85 1.8E-05 41.6 9.6 87 20-115 9-141 (388)
390 PRK06753 hypothetical protein; 92.8 0.7 1.5E-05 41.9 9.0 42 64-114 110-151 (373)
391 PRK06134 putative FAD-binding 92.8 0.15 3.3E-06 49.3 4.7 87 22-113 174-276 (581)
392 TIGR02462 pyranose_ox pyranose 92.7 0.15 3.3E-06 48.6 4.5 36 104-139 1-36 (544)
393 PRK05329 anaerobic glycerol-3- 92.7 0.14 3E-06 47.5 4.1 33 103-135 2-34 (422)
394 TIGR00137 gid_trmFO tRNA:m(5)U 92.7 0.69 1.5E-05 42.9 8.5 23 20-42 10-32 (433)
395 PTZ00188 adrenodoxin reductase 92.7 0.17 3.6E-06 47.6 4.6 31 281-311 37-68 (506)
396 PLN02568 polyamine oxidase 92.6 0.16 3.6E-06 48.6 4.7 35 103-137 5-44 (539)
397 PRK07045 putative monooxygenas 92.6 1.2 2.5E-05 40.8 10.1 56 52-115 108-165 (388)
398 PRK06475 salicylate hydroxylas 92.5 1.1 2.4E-05 41.1 10.0 54 54-113 111-165 (400)
399 PRK06567 putative bifunctional 92.4 0.15 3.2E-06 51.7 4.0 31 281-311 381-411 (1028)
400 COG2072 TrkA Predicted flavopr 92.3 2.7 5.8E-05 39.3 12.2 114 21-134 19-206 (443)
401 TIGR01320 mal_quin_oxido malat 92.3 0.64 1.4E-05 44.0 8.1 69 50-121 178-246 (483)
402 PRK01438 murD UDP-N-acetylmura 92.2 0.53 1.2E-05 44.5 7.5 30 105-134 18-47 (480)
403 TIGR00137 gid_trmFO tRNA:m(5)U 92.2 0.17 3.6E-06 46.8 3.9 33 104-136 1-33 (433)
404 COG1231 Monoamine oxidase [Ami 92.2 0.19 4.1E-06 46.1 4.2 36 102-137 6-41 (450)
405 PLN02464 glycerol-3-phosphate 92.1 0.16 3.4E-06 49.7 3.9 33 103-135 71-103 (627)
406 COG3486 IucD Lysine/ornithine 92.1 0.91 2E-05 41.2 8.2 109 62-173 290-409 (436)
407 PLN02676 polyamine oxidase 92.1 0.21 4.5E-06 47.3 4.5 36 101-136 24-60 (487)
408 TIGR01320 mal_quin_oxido malat 92.0 0.16 3.4E-06 48.1 3.6 33 104-136 1-35 (483)
409 PRK05257 malate:quinone oxidor 92.0 0.17 3.6E-06 48.0 3.8 35 102-136 4-40 (494)
410 PRK08243 4-hydroxybenzoate 3-m 91.8 0.9 1.9E-05 41.6 8.4 55 54-114 107-162 (392)
411 PRK06183 mhpA 3-(3-hydroxyphen 91.8 1.1 2.5E-05 42.9 9.4 54 55-113 118-172 (538)
412 TIGR00136 gidA glucose-inhibit 91.8 2.2 4.8E-05 41.3 11.1 85 20-113 10-152 (617)
413 KOG0685|consensus 91.8 0.23 5E-06 45.7 4.3 34 103-136 21-55 (498)
414 PF12831 FAD_oxidored: FAD dep 91.7 0.13 2.8E-06 47.8 2.7 92 20-116 9-151 (428)
415 PRK13977 myosin-cross-reactive 91.6 0.69 1.5E-05 44.3 7.5 93 18-113 190-291 (576)
416 PLN02328 lysine-specific histo 91.6 0.66 1.4E-05 46.4 7.5 35 102-136 237-271 (808)
417 TIGR02730 carot_isom carotene 91.5 0.55 1.2E-05 44.6 6.7 57 49-113 228-284 (493)
418 TIGR02731 phytoene_desat phyto 91.3 0.26 5.6E-06 46.2 4.2 32 105-136 1-32 (453)
419 TIGR02352 thiamin_ThiO glycine 91.2 0.54 1.2E-05 41.8 6.1 58 49-115 136-193 (337)
420 PRK08773 2-octaprenyl-3-methyl 90.9 0.68 1.5E-05 42.4 6.6 57 50-115 113-169 (392)
421 PTZ00383 malate:quinone oxidor 90.9 1.1 2.3E-05 42.6 8.0 62 50-120 211-278 (497)
422 PLN02529 lysine-specific histo 90.7 0.32 6.9E-06 48.2 4.4 35 102-136 159-193 (738)
423 PRK12416 protoporphyrinogen ox 90.6 0.28 6.1E-06 46.0 3.9 33 105-137 3-41 (463)
424 PRK08132 FAD-dependent oxidore 90.6 2 4.4E-05 41.3 9.8 54 55-114 130-184 (547)
425 COG0644 FixC Dehydrogenases (f 90.6 2.4 5.2E-05 39.0 9.9 91 20-118 13-155 (396)
426 KOG1399|consensus 90.5 1.6 3.4E-05 40.8 8.4 90 20-113 16-151 (448)
427 COG1148 HdrA Heterodisulfide r 90.2 0.34 7.5E-06 44.8 3.8 36 101-136 122-157 (622)
428 PLN02661 Putative thiazole syn 90.2 2.9 6.3E-05 37.7 9.6 96 21-116 103-245 (357)
429 COG2303 BetA Choline dehydroge 90.1 0.34 7.4E-06 46.5 4.0 37 100-136 4-40 (542)
430 TIGR02732 zeta_caro_desat caro 90.0 0.4 8.7E-06 45.2 4.3 32 105-136 1-32 (474)
431 PLN02785 Protein HOTHEAD 90.0 0.33 7.2E-06 47.0 3.8 35 101-136 53-87 (587)
432 PRK07538 hypothetical protein; 89.8 2.9 6.2E-05 38.6 9.8 57 54-114 106-164 (413)
433 PRK07333 2-octaprenyl-6-methox 89.8 0.92 2E-05 41.6 6.5 57 50-115 111-167 (403)
434 TIGR01810 betA choline dehydro 89.6 0.33 7.2E-06 46.5 3.5 32 105-136 1-33 (532)
435 PRK05257 malate:quinone oxidor 89.4 1.8 3.9E-05 41.1 8.2 67 51-120 184-251 (494)
436 TIGR02734 crtI_fam phytoene de 89.3 1 2.2E-05 42.8 6.5 56 50-113 219-274 (502)
437 COG3349 Uncharacterized conser 89.2 0.51 1.1E-05 44.1 4.2 32 105-136 2-33 (485)
438 KOG0042|consensus 89.2 0.78 1.7E-05 43.2 5.3 35 100-134 64-98 (680)
439 TIGR02023 BchP-ChlP geranylger 88.8 3.7 8E-05 37.6 9.7 60 54-115 96-155 (388)
440 TIGR03378 glycerol3P_GlpB glyc 88.8 0.5 1.1E-05 43.5 3.9 33 104-136 1-33 (419)
441 PRK00711 D-amino acid dehydrog 88.5 1.9 4E-05 39.8 7.6 58 51-117 202-259 (416)
442 COG1206 Gid NAD(FAD)-utilizing 88.4 8.2 0.00018 34.4 10.7 31 105-135 5-35 (439)
443 PRK11728 hydroxyglutarate oxid 88.3 1.9 4.2E-05 39.5 7.5 61 49-119 148-208 (393)
444 PRK05714 2-octaprenyl-3-methyl 88.2 1.5 3.3E-05 40.3 6.7 54 51-113 113-166 (405)
445 COG1232 HemY Protoporphyrinoge 88.1 0.62 1.3E-05 43.3 4.0 32 105-136 2-35 (444)
446 PRK13339 malate:quinone oxidor 88.0 2.5 5.5E-05 40.1 8.1 69 50-121 184-253 (497)
447 KOG3851|consensus 87.9 1.2 2.5E-05 39.3 5.2 116 27-150 210-334 (446)
448 TIGR03197 MnmC_Cterm tRNA U-34 87.5 1.4 2.9E-05 40.3 5.9 56 49-114 134-189 (381)
449 TIGR01377 soxA_mon sarcosine o 87.3 2.1 4.5E-05 38.8 7.1 59 50-118 145-203 (380)
450 PF00890 FAD_binding_2: FAD bi 87.1 2.1 4.5E-05 39.6 6.9 62 49-113 140-201 (417)
451 TIGR01984 UbiH 2-polyprenyl-6- 87.1 1.8 3.9E-05 39.3 6.5 57 50-115 105-162 (382)
452 PRK14106 murD UDP-N-acetylmura 87.0 2.6 5.7E-05 39.4 7.7 44 21-70 16-59 (450)
453 COG0445 GidA Flavin-dependent 86.7 5.8 0.00012 37.7 9.3 21 21-41 15-35 (621)
454 TIGR01789 lycopene_cycl lycope 86.6 1.9 4.1E-05 39.3 6.3 23 20-42 9-33 (370)
455 PRK13977 myosin-cross-reactive 86.5 0.9 1.9E-05 43.6 4.2 35 103-137 22-60 (576)
456 PLN02612 phytoene desaturase 86.5 0.84 1.8E-05 44.2 4.1 34 102-135 92-125 (567)
457 COG2518 Pcm Protein-L-isoaspar 86.4 5.5 0.00012 33.0 8.2 89 17-132 75-169 (209)
458 PLN03000 amine oxidase 86.0 1 2.2E-05 45.4 4.4 34 103-136 184-217 (881)
459 TIGR03197 MnmC_Cterm tRNA U-34 85.1 2.8 6.2E-05 38.1 6.7 45 211-258 143-190 (381)
460 PLN02612 phytoene desaturase 85.0 2.5 5.5E-05 40.9 6.6 56 50-113 308-364 (567)
461 TIGR03378 glycerol3P_GlpB glyc 85.0 4.2 9.1E-05 37.6 7.6 60 49-114 262-321 (419)
462 TIGR03377 glycerol3P_GlpA glyc 85.0 3.4 7.4E-05 39.5 7.4 67 49-118 127-193 (516)
463 PRK12409 D-amino acid dehydrog 84.7 4 8.7E-05 37.5 7.6 65 51-119 198-262 (410)
464 TIGR01988 Ubi-OHases Ubiquinon 84.4 3 6.4E-05 37.8 6.5 55 51-114 107-162 (385)
465 KOG1238|consensus 84.4 1 2.3E-05 43.2 3.5 37 100-136 54-91 (623)
466 PRK11101 glpA sn-glycerol-3-ph 84.2 4.3 9.3E-05 39.1 7.7 66 50-118 149-214 (546)
467 PRK08020 ubiF 2-octaprenyl-3-m 83.7 3.6 7.7E-05 37.6 6.8 55 52-115 114-169 (391)
468 KOG4254|consensus 83.6 1.4 3E-05 40.7 3.8 34 102-135 13-46 (561)
469 PLN02487 zeta-carotene desatur 83.6 1.3 2.8E-05 42.8 3.9 33 104-136 76-108 (569)
470 TIGR02733 desat_CrtD C-3',4' d 83.5 3.3 7.2E-05 39.2 6.6 65 46-113 228-292 (492)
471 PRK11445 putative oxidoreducta 83.4 9.4 0.0002 34.4 9.3 47 62-115 110-157 (351)
472 PF13454 NAD_binding_9: FAD-NA 83.1 4.8 0.0001 31.6 6.4 42 63-113 113-155 (156)
473 KOG2403|consensus 83.1 21 0.00045 34.1 11.1 50 103-152 55-104 (642)
474 PF05834 Lycopene_cycl: Lycope 83.0 9.4 0.0002 34.8 9.1 87 20-116 9-143 (374)
475 PRK11259 solA N-methyltryptoph 83.0 3.4 7.4E-05 37.4 6.3 57 50-116 149-205 (376)
476 TIGR02731 phytoene_desat phyto 82.9 4 8.6E-05 38.2 6.9 61 50-113 213-274 (453)
477 PRK07233 hypothetical protein; 81.8 4.4 9.5E-05 37.4 6.7 56 49-113 197-252 (434)
478 PRK09126 hypothetical protein; 81.7 3.8 8.2E-05 37.4 6.1 53 54-115 114-167 (392)
479 TIGR02485 CobZ_N-term precorri 81.4 4.7 0.0001 37.5 6.7 58 49-113 122-181 (432)
480 PRK07190 hypothetical protein; 81.3 4.4 9.5E-05 38.5 6.5 50 55-113 114-163 (487)
481 TIGR03467 HpnE squalene-associ 81.0 5.1 0.00011 36.7 6.8 57 48-113 195-252 (419)
482 TIGR02352 thiamin_ThiO glycine 81.0 4.4 9.6E-05 35.9 6.2 46 209-257 143-192 (337)
483 PLN02976 amine oxidase 80.8 1.8 3.9E-05 46.0 3.9 35 101-135 691-725 (1713)
484 PF00996 GDI: GDP dissociation 80.6 2.1 4.5E-05 39.8 3.9 34 103-136 4-37 (438)
485 PLN02529 lysine-specific histo 80.4 1.7 3.6E-05 43.3 3.4 30 282-311 159-188 (738)
486 COG1233 Phytoene dehydrogenase 80.2 4.2 9.1E-05 38.6 6.0 59 47-113 221-279 (487)
487 PLN02927 antheraxanthin epoxid 80.2 1.9 4.2E-05 42.3 3.7 31 281-311 79-109 (668)
488 TIGR01813 flavo_cyto_c flavocy 80.1 5.6 0.00012 37.0 6.8 61 49-113 129-190 (439)
489 PLN00093 geranylgeranyl diphos 80.1 2.7 5.8E-05 39.4 4.6 29 283-311 39-67 (450)
490 PRK06996 hypothetical protein; 80.0 4.7 0.0001 37.0 6.1 58 50-113 115-172 (398)
491 PLN02487 zeta-carotene desatur 79.3 2.1 4.4E-05 41.4 3.6 29 283-311 75-103 (569)
492 PRK08850 2-octaprenyl-6-methox 78.8 6.7 0.00014 36.1 6.8 53 52-113 113-166 (405)
493 PLN02328 lysine-specific histo 78.8 2.1 4.6E-05 42.9 3.6 30 282-311 237-266 (808)
494 PRK08849 2-octaprenyl-3-methyl 78.6 6.1 0.00013 36.0 6.4 42 63-113 124-165 (384)
495 KOG2755|consensus 78.3 0.86 1.9E-05 38.9 0.6 52 101-152 268-322 (334)
496 PRK09897 hypothetical protein; 78.2 6.9 0.00015 37.6 6.7 34 230-266 422-458 (534)
497 PRK13369 glycerol-3-phosphate 78.2 6.3 0.00014 37.5 6.5 65 49-118 154-218 (502)
498 PRK05732 2-octaprenyl-6-methox 78.0 7.2 0.00016 35.5 6.7 55 52-115 114-169 (395)
499 PRK08013 oxidoreductase; Provi 77.8 6.9 0.00015 35.9 6.5 53 52-113 113-166 (400)
500 PRK06481 fumarate reductase fl 77.8 7.9 0.00017 36.9 7.1 57 51-112 191-248 (506)
No 1
>KOG4716|consensus
Probab=99.96 E-value=2.7e-28 Score=206.49 Aligned_cols=211 Identities=62% Similarity=1.030 Sum_probs=199.6
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW 179 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (312)
...++|++|||+|..||++|..+...|.++.++|.-.++..+.-|.+|+.|.+.+|+|.+++|.+...+..+.+...|||
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence 46789999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185 180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN 259 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~ 259 (312)
+..+. ..++||+.+...++.+...+.|...-+++...|+++++...+.+++.+..+...|+.+.++|+.+|||||.+|+
T Consensus 96 ~~~e~-~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPr 174 (503)
T KOG4716|consen 96 NVDEQ-KIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPR 174 (503)
T ss_pred CCccc-cccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCC
Confidence 87652 58899999999999999999999888899999999999999999999999998888889999999999999999
Q ss_pred CCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 260 ~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
.|.+||..++++++++.+.+...|++-+|||+|+.|.|+|-.|...+.+||+
T Consensus 175 Yp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtV 226 (503)
T KOG4716|consen 175 YPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTV 226 (503)
T ss_pred CCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEE
Confidence 9999999999999999999999999999999999999999999998888875
No 2
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.93 E-value=1.8e-24 Score=202.16 Aligned_cols=207 Identities=61% Similarity=1.029 Sum_probs=172.6
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
++|+||||+|++|+.+|..+.+.|.++.++|+..++.....+..|+.|.+.+|.|++....+............+++...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 68999999999999999999999999999997544444444568999999999999988887776666555555665432
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD 262 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~ 262 (312)
. ...+||..+..+.......+.......++..+|+++.+...+.++..+.++..+|+...+.||+||+|||+.|+.|+
T Consensus 82 ~--~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ 159 (484)
T TIGR01438 82 E--TVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPG 159 (484)
T ss_pred C--CcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCC
Confidence 1 14679999999888887777666677788899999999999999888888776665568999999999999999999
Q ss_pred CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+||......+++++..+...+++++|||||++|+|.|..+...+.+||+
T Consensus 160 ipG~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl 208 (484)
T TIGR01438 160 IPGAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTV 208 (484)
T ss_pred CCCccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEE
Confidence 9998666677888887777889999999999999999999988888886
No 3
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.92 E-value=2.9e-23 Score=189.76 Aligned_cols=198 Identities=35% Similarity=0.524 Sum_probs=170.2
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH-HcCC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV-AYGW 179 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 179 (312)
..+||+||||+||+|..+|..+.+.|.++.++|+.. ..|+.|.+.+|.|++....+......+.... .+|.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~--------~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi 73 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE--------RLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGI 73 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC--------CcCceEEeeCccccHHHHHHHHHHHHHhhcccccce
Confidence 357999999999999999999999999988899752 2788999999999999988888777666554 4665
Q ss_pred ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185 180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN 259 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~ 259 (312)
.... ..+||..+..+...............++..+|+++.++..+.++..+.+... +.+++.++++|||||+.|.
T Consensus 74 ~~~~---~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~--~~~~~~a~~iiIATGS~p~ 148 (454)
T COG1249 74 SAEV---PKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE--DKETITADNIIIATGSRPR 148 (454)
T ss_pred ecCC---CCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC--CceEEEeCEEEEcCCCCCc
Confidence 5443 2689999999999877777778888888889999999999999888888776 3489999999999999999
Q ss_pred CCCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 260 YPDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 260 ~p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
.|++++.+.. .+++++.+.+...|++++|||||.+|+|.+..++..+.+|||
T Consensus 149 ~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTi 201 (454)
T COG1249 149 IPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTV 201 (454)
T ss_pred CCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 9999998664 677878676669999999999999999999999999999997
No 4
>PLN02507 glutathione reductase
Probab=99.91 E-value=9.7e-23 Score=191.15 Aligned_cols=208 Identities=37% Similarity=0.634 Sum_probs=168.9
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC-CCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI-PSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW 179 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~-~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (312)
..+||++|||+||+|+.+|..+.+.|.++.++|+.. ..+.......|+.|.+.+|.|++....+......+.....+++
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 457999999999999999999999999999999532 1122222347889999999999988777766666666666776
Q ss_pred ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185 180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN 259 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~ 259 (312)
.... ...+||..+........+.+.......+...+|+++.+.+.+++...+.+++.+|+...+.||+||+|||+.|.
T Consensus 103 ~~~~--~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 103 EINE--KVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred ccCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 5432 34689999888877777777666667778889999999988889999999988886567999999999999999
Q ss_pred CCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 260 ~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
.|++||.+. .+++++...+...+++++|||+|.+|+|.|..+...+.+|+|
T Consensus 181 ~p~ipG~~~-~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl 231 (499)
T PLN02507 181 RPNIPGKEL-AITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDL 231 (499)
T ss_pred CCCCCCccc-eechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 999999743 356677777777789999999999999999999988889887
No 5
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.91 E-value=1.9e-22 Score=188.33 Aligned_cols=199 Identities=30% Similarity=0.434 Sum_probs=161.2
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
.++|++|||+||+|+.+|..+.+.|.++.++|+.. ..|+.|.+.+|.|++....+......+.....+++.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~--------~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~ 74 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS--------TLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVF 74 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--------cccccccCCCcccHHHHHHHHHHHHHHhhhhhcCccc
Confidence 46899999999999999999999999999999642 2688899999999988776666555555555566543
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC-
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY- 260 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~- 260 (312)
. ...+||..+..+.....+.+.......++..+|+++.++..+.+...+.+...+|+..++.||+||+|||+.|+.
T Consensus 75 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~ 151 (471)
T PRK06467 75 G---EPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQL 151 (471)
T ss_pred C---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCC
Confidence 2 246789998888877766665556667788899999999888888888888777755689999999999999975
Q ss_pred CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|.+++.....+++.+...+...+++++|||+|.+|+|.|..+...+.+|||
T Consensus 152 p~~~~~~~~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtl 202 (471)
T PRK06467 152 PFIPHDDPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDV 202 (471)
T ss_pred CCCCCCCCcEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 546665445677777777777889999999999999999999988889887
No 6
>PLN02546 glutathione reductase
Probab=99.91 E-value=1.6e-22 Score=190.85 Aligned_cols=203 Identities=35% Similarity=0.644 Sum_probs=167.1
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC-CCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS-PQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW 179 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~-~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (312)
..+||++|||+|++|+.+|..+.+.|.++.++|+...+ ..+.....|+.|.+.+|.|++....+......+.....+++
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 56799999999999999999999999999999964322 22223457999999999999999888777777776666776
Q ss_pred ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185 180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN 259 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~ 259 (312)
.... ...+||..+..+.....+.+...+...++..+|+++.+....++...+.+ +| ..+.||+||+|||+.|.
T Consensus 157 ~~~~--~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v---~G--~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 157 KYET--EPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV---DG--KLYTARNILIAVGGRPF 229 (558)
T ss_pred ccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE---CC--EEEECCEEEEeCCCCCC
Confidence 5321 24689999999988888877777777888899999999888888776655 56 57999999999999999
Q ss_pred CCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 260 YPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 260 ~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
.|++||.+ ..++++++......+++|+|||||.+|+|.|..+...+.+|+|
T Consensus 230 ~P~IpG~~-~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtl 280 (558)
T PLN02546 230 IPDIPGIE-HAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHV 280 (558)
T ss_pred CCCCCChh-hccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 99999974 4567777777777789999999999999999999888888886
No 7
>KOG0405|consensus
Probab=99.90 E-value=3.8e-23 Score=175.92 Aligned_cols=200 Identities=41% Similarity=0.674 Sum_probs=180.5
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE 180 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (312)
..++|.++||+|..|+..|......|.++.++|.. |..|+.|...+|.|.+...++......+.+...|||.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~--------f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~ 89 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP--------FGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFP 89 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC--------CCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCc
Confidence 45899999999999999999999999999888863 4799999999999999999999999999998889987
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
... ...+||..+.+....+...+.-..+..+.+..|+++.++..+.++..+.++..||.+..|++++++||||+.|.+
T Consensus 90 ~~~--~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~ 167 (478)
T KOG0405|consen 90 INE--EGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPII 167 (478)
T ss_pred ccc--ccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCC
Confidence 654 578999999998888888888778888999999999999999999999999999866679999999999999999
Q ss_pred CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|.+||. ++.++++.++.+...|+|++|||+|++|+|.|--+...+.+++|
T Consensus 168 PnIpG~-E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethl 217 (478)
T KOG0405|consen 168 PNIPGA-ELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHL 217 (478)
T ss_pred CCCCch-hhccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEE
Confidence 999999 58899999999999999999999999999988888877777765
No 8
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.90 E-value=3e-22 Score=186.03 Aligned_cols=193 Identities=36% Similarity=0.662 Sum_probs=159.8
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
+||++|||+||+|+.+|..+.+.|.+++++|+. ..|+.|.+.+|.|++....+......+.....+++...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~---------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~ 72 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP---------RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG 72 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC---------ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC
Confidence 689999999999999999999999999999963 27888999999999988877777666666666765432
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD 262 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~ 262 (312)
...++|..+..+.......+...+...+...+|+++.+....++...+.+. .+| ..+.||+||+|||+.|..|+
T Consensus 73 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~-~~g--~~~~~d~lIiATGs~p~~p~ 146 (446)
T TIGR01424 73 ---KARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVL-QDG--TTYTAKKILIAVGGRPQKPN 146 (446)
T ss_pred ---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEe-cCC--eEEEcCEEEEecCCcCCCCC
Confidence 246899999988877777776677778888999999988877777777665 355 57999999999999999999
Q ss_pred CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 263 IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 263 ~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+||.+ ...++.+...+...+++++|||+|.+|+|.|..+...+.+|++
T Consensus 147 i~G~~-~~~~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtl 194 (446)
T TIGR01424 147 LPGHE-LGITSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTL 194 (446)
T ss_pred CCCcc-ceechHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 99874 3456666666667789999999999999999998888888886
No 9
>PTZ00058 glutathione reductase; Provisional
Probab=99.90 E-value=2.4e-22 Score=189.59 Aligned_cols=194 Identities=35% Similarity=0.628 Sum_probs=160.0
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE 180 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (312)
..++|++|||+|++|+.+|..+.+.|.++.++|+. ..|+.|.+++|.|++....+......+.....+|..
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~---------~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~ 116 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD---------YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFD 116 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc---------cccccccccCCCCCchhhhhcccHHHHHHHHhcCCC
Confidence 46899999999999999999999999999999963 388999999999999888777766666666666654
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEE------------------------
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEAT------------------------ 236 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~------------------------ 236 (312)
. ...+||..+..+.......+.......++..+|+++.++..+.++..+.++
T Consensus 117 ~----~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~ 192 (561)
T PTZ00058 117 T----QFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGV 192 (561)
T ss_pred c----cCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccc
Confidence 2 135789998888887777766666677788899999999888777766531
Q ss_pred --ecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 237 --MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 237 --~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
..+| .++.||+||+|||+.|..|+++|.+ +.++++++..+.. +++|+|||+|.+|+|.|..+...+.+||+
T Consensus 193 ~~~~~g--~~i~ad~lVIATGS~P~~P~IpG~~-~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtl 265 (561)
T PTZ00058 193 SQLDDG--QVIEGKNILIAVGNKPIFPDVKGKE-FTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYI 265 (561)
T ss_pred eecCCC--cEEECCEEEEecCCCCCCCCCCCce-eEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEE
Confidence 2355 5799999999999999999999975 5667777766655 88999999999999999999988889986
No 10
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.90 E-value=5.9e-22 Score=186.01 Aligned_cols=205 Identities=57% Similarity=0.946 Sum_probs=162.7
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCCc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGWE 180 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 180 (312)
+.+|++|||+||+|+.+|..+.+.|.+++++|+..+.+....|..|+.|.+.+|.|++....+......+.. ...|++.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~ 83 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK 83 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC
Confidence 468999999999999999999999999999997443333333557999999999999877666555554432 2335543
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
.. . .++|..+.++.....+.+.......+...+|+++.+...+.+.+.+.+... ++...+.||+||+|||+.|..
T Consensus 84 ~~---~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~-~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 84 TS---S-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDN-SQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CC---C-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeC-CCceEEECCEEEEecCCCCCC
Confidence 21 2 689999999999888877666666677789999999888777777777643 223679999999999999998
Q ss_pred CC-CCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 261 PD-IPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 261 p~-~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+ +||...+..++.++..+...+++++|||+|.+|+|.|..|...+.+||+
T Consensus 159 p~~i~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl 210 (499)
T PTZ00052 159 PEDVPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTV 210 (499)
T ss_pred CCCCCCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 85 9998766777778877777788999999999999999999988889987
No 11
>PRK06370 mercuric reductase; Validated
Probab=99.90 E-value=9.7e-22 Score=183.62 Aligned_cols=194 Identities=31% Similarity=0.497 Sum_probs=156.2
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
.++|++|||+||+|+.+|..+.+.|.++.++|+. ..|+.|.+.+|.|++....+......+.....+++..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~---------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 74 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG---------LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSV 74 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC---------ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4689999999999999999999999999999963 2677899999999998887777766666666666542
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
.. ...+||..+..+.....+.+.......++.. +|+++.++....+...+.+ +| .++.||+||+|||+.|+.
T Consensus 75 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v---~~--~~~~~d~lViATGs~p~~ 147 (463)
T PRK06370 75 GG--PVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV---GG--ETLRAKRIFINTGARAAI 147 (463)
T ss_pred Cc--cCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEcCCCCCCC
Confidence 21 2367899988888777766555566677776 9999988876666666655 45 578999999999999999
Q ss_pred CCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 261 PDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 261 p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|++||.+.. .+++.++......+++|+|||+|++|+|.|..+...+.+|++
T Consensus 148 p~i~G~~~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtl 199 (463)
T PRK06370 148 PPIPGLDEVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTV 199 (463)
T ss_pred CCCCCCCcCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 999998653 456666666667789999999999999999999888888886
No 12
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.90 E-value=8.1e-22 Score=183.11 Aligned_cols=192 Identities=42% Similarity=0.704 Sum_probs=155.0
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
++|++|||+||+|+.+|..+.+.|.++.++|+. ..|+.|.+.+|.|++....+......+.....++....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~---------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~ 72 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK---------KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQN 72 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc---------ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccC
Confidence 589999999999999999999999999999963 27888999999999987777666666666555665422
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC-
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP- 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p- 261 (312)
. ...++|..+..+.....+.+...+...+...+|+++.++....+...+.+ +| ..+.||+||+|||+.|..|
T Consensus 73 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v---~~--~~~~~d~vIiAtGs~p~~p~ 145 (450)
T TIGR01421 73 L--ENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV---NG--RDYTAPHILIATGGKPSFPE 145 (450)
T ss_pred C--cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCCCC
Confidence 1 12478888888877777766666667788889999998876666665544 45 5799999999999999998
Q ss_pred CCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 262 DIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
++||.+ ...+++++..+...+++++|||||.+|+|.|..+...+.+|||
T Consensus 146 ~i~g~~-~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtl 194 (450)
T TIGR01421 146 NIPGAE-LGTDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHL 194 (450)
T ss_pred CCCCCc-eeEcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 899874 3456777777777889999999999999999999988888886
No 13
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.89 E-value=1e-21 Score=183.28 Aligned_cols=208 Identities=37% Similarity=0.609 Sum_probs=160.9
Q ss_pred ccccEEEEecCcchHHHHHHHHHC-CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE 180 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (312)
.+||++|||+|++|+.+|..+.+. |.++.++|+......+.-...|+.|.+.+|.|++....+......+.....+++.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 468999999999999999999996 8899999964222222112489999999999999988887777766665556653
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhc-CCceEEeceeEEeeCCeEEEEecC---C-CeEEEEcCeEEEccC
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD-KKVDYLNALGKFIDQHSVEATMKN---G-EKKTLTAENILIATG 255 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~~~~~~~~~~~~~~~~v~~~~---G-~~~~i~ad~vVlAtG 255 (312)
.. .....+||..+..+.......+.......++. .+|+++.+...+.++..+.+.... + +.+++.||+||+|||
T Consensus 82 ~~-~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATG 160 (486)
T TIGR01423 82 FD-RSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATG 160 (486)
T ss_pred cc-CCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecC
Confidence 21 11346799999988888877776666666766 599999999988898888886421 1 136899999999999
Q ss_pred CCCCCCCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhc---Cceeeee
Q psy11185 256 GRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNS---GCGNVTI 311 (312)
Q Consensus 256 ~~p~~p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~---~~~~V~~ 311 (312)
+.|..|++||.+. .+++.+++.+...+++++|||||.+|+|.|..+.. .+.+|||
T Consensus 161 s~p~~p~i~G~~~-~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtl 218 (486)
T TIGR01423 161 SWPQMLGIPGIEH-CISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTL 218 (486)
T ss_pred CCCCCCCCCChhh-eechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEE
Confidence 9999999999753 46666777676778999999999999998875543 3668876
No 14
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.89 E-value=1.8e-21 Score=182.23 Aligned_cols=198 Identities=31% Similarity=0.485 Sum_probs=157.9
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
..+|++|||+||+|+.+|..+.+.|.++.++|+. ..|+.|...+|.|++....+......+.....++...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~---------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 73 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG---------KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISV 73 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc---------CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccC
Confidence 3689999999999999999999999999999963 2688899999999998777666555555555555432
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCC-------eEEEEecCCCeEEEEcCeEEEcc
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQH-------SVEATMKNGEKKTLTAENILIAT 254 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~-------~~~v~~~~G~~~~i~ad~vVlAt 254 (312)
. ...++|..+..+.....+.+.......++..+|+++.+.+..++.. .+.+.+.+|+..++.||+||+||
T Consensus 74 ~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViAT 150 (472)
T PRK05976 74 S---GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIAT 150 (472)
T ss_pred C---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeC
Confidence 2 2357888888887777766665566677788999999998888877 88888877755689999999999
Q ss_pred CCCCCCCCCCCC-CcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 255 GGRPNYPDIPGA-KEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 255 G~~p~~p~~~g~-~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+.|..|+.... ..+.+++.+...+...+++++|||||++|+|+|..+...+.+|+|
T Consensus 151 Gs~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtl 208 (472)
T PRK05976 151 GSRPVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTV 208 (472)
T ss_pred CCCCCCCCCCCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 999976543222 234667777777777789999999999999999999988888886
No 15
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.89 E-value=1.6e-21 Score=182.16 Aligned_cols=201 Identities=32% Similarity=0.477 Sum_probs=156.4
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW 179 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (312)
+...+|++|||+||+|+.+|..+.+.|.+++++|+.. ..|+.|...+|.|++...........+.....+ .
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~--------~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~-~ 72 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR--------NVGGGCTHTGTIPSKALREAVLRLIGFNQNPLY-S 72 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc--------cccccccccCCCCHHHHHHHHHHHHHHhhhhhh-c
Confidence 3456899999999999999999999999999999743 267788899999987665544433333322222 1
Q ss_pred ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185 180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN 259 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~ 259 (312)
.... ...+++..+..+.....+.+...+...+...+|+++.+....++...+.+...+|+...+.||+||+|||+.|.
T Consensus 73 ~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 73 SYRV--KLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPY 150 (461)
T ss_pred ccCC--cCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence 1111 24568888888877766666556667778889999999888888888888887775568999999999999999
Q ss_pred CCCCCCCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 260 YPDIPGAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 260 ~p~~~g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
.|++++... ..+++.++......+++++|||+|.+|+|.|..+...+.+|+|
T Consensus 151 ~p~~~~~~~~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtl 203 (461)
T PRK05249 151 RPPDVDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTL 203 (461)
T ss_pred CCCCCCCCCCeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 988777643 3567777777777889999999999999999999988888886
No 16
>PRK14694 putative mercuric reductase; Provisional
Probab=99.89 E-value=1.5e-21 Score=182.52 Aligned_cols=200 Identities=27% Similarity=0.481 Sum_probs=153.7
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH-HcC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV-AYG 178 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 178 (312)
....+|++|||+|++|+.+|..+.+.+.++.++|+.. .|+.|.+.+|.|++....+........... .++
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~---------~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g 73 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT---------IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDG 73 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc---------cccceecCCccccHHHHHHHHHHHHHhhccccCC
Confidence 4568999999999999999999999999999999642 688899999999988776665555443322 123
Q ss_pred CccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhc-CCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC
Q psy11185 179 WEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRD-KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG 256 (312)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~ 256 (312)
.... ...++|..+..+.......+... ....+.. .+|+++.+.+..++...+.++..+|+..++.||+||+|||+
T Consensus 74 ~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs 150 (468)
T PRK14694 74 LSAQ---APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGA 150 (468)
T ss_pred cccC---CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCC
Confidence 2211 23578888887776665544322 2333443 48999999988888888888887775568999999999999
Q ss_pred CCCCCCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 257 RPNYPDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 257 ~p~~p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
.|+.|++||.+.. ..++.+...+...+++++|||+|.+|+|.|..|...+.+|++
T Consensus 151 ~p~~p~i~G~~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtl 206 (468)
T PRK14694 151 RPAEPPVPGLAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTV 206 (468)
T ss_pred CCCCCCCCCCCCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 9999999998643 455566666666789999999999999999999988888886
No 17
>PRK06116 glutathione reductase; Validated
Probab=99.89 E-value=1.8e-21 Score=181.26 Aligned_cols=192 Identities=45% Similarity=0.747 Sum_probs=153.5
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCCc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGWE 180 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~ 180 (312)
.++|++|||+||+|+.+|..+.+.|.+++++|+. ..|+.|.+.+|.|++....+......+.. ...+++.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~---------~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~ 73 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK---------RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFD 73 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc---------chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCC
Confidence 3689999999999999999999999999999974 27888999999999987776655554444 3345543
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
.. ...++|..+..+.....+.+.......+...+|+++.+++..++...+.+ +| .++.||+||+|||+.|..
T Consensus 74 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~---~g--~~~~~d~lViATGs~p~~ 145 (450)
T PRK06116 74 VT---ENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV---NG--ERYTADHILIATGGRPSI 145 (450)
T ss_pred CC---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCC
Confidence 22 24678888888877666666555666777889999998877777766655 56 579999999999999999
Q ss_pred CCCCCCCcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 261 PDIPGAKEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 261 p~~~g~~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+++|.+ ..+++.++......+++++|||+|.+|+|.|..+...+.+|++
T Consensus 146 p~i~g~~-~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtl 195 (450)
T PRK06116 146 PDIPGAE-YGITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHL 195 (450)
T ss_pred CCCCCcc-eeEchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 9999875 3566777777777789999999999999999999888888876
No 18
>PRK14727 putative mercuric reductase; Provisional
Probab=99.88 E-value=2.9e-21 Score=180.89 Aligned_cols=201 Identities=27% Similarity=0.433 Sum_probs=151.9
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW 179 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (312)
...++|++|||+|++|+.+|..+.+.+.+++++|+.. .+|+.|.+.+|.|++....+............+++
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~--------~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~ 84 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD--------VIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGV 84 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC--------cceeEeccccccccHHHHHHHHHHHHHhhccccCc
Confidence 3467999999999999999999999999999999642 26888999999999987776655554444333343
Q ss_pred ccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhc-CCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185 180 EIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRD-KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR 257 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~ 257 (312)
... ...++|..+..+.......+.. .....++. .+|+++.+...+.+...+.++..+|+..++.||+||||||+.
T Consensus 85 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~ 161 (479)
T PRK14727 85 EAV---APSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGST 161 (479)
T ss_pred ccC---CCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCC
Confidence 321 1245777766665555444322 23334443 489999999888888889998877755679999999999999
Q ss_pred CCCCCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 258 PNYPDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 258 p~~p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+.|+++|.... .+++.+.......+++++|||+|.+|+|.|..+...+.+|++
T Consensus 162 p~~p~i~G~~~~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtl 216 (479)
T PRK14727 162 PTIPPIPGLMDTPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTI 216 (479)
T ss_pred CCCCCCCCcCccceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 999999997543 344444444455688999999999999999999888888886
No 19
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.88 E-value=5.8e-21 Score=178.43 Aligned_cols=195 Identities=33% Similarity=0.549 Sum_probs=155.6
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
.++|++|||+||+|+.+|..+.+.|.++.++|+.. .|+.|...+|.|++.................+++..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~---------~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~ 73 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK---------LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKA 73 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc---------cccceeecccCCcHHHHHhhhHHHHHHHHHhcCccc
Confidence 46899999999999999999999999999999632 688899999999988777766666666666666543
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP 261 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p 261 (312)
. ...++|..+..+.....+.+...+...++..+|+++.+++..++...+++...+|. .++.||+||+|||+.|..|
T Consensus 74 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~-~~~~~d~lViAtGs~p~~~ 149 (462)
T PRK06416 74 E---NVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGE-QTYTAKNIILATGSRPREL 149 (462)
T ss_pred C---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEeCCCCCCCC
Confidence 2 23578898888888777766656666777889999999888888888888754432 6799999999999999765
Q ss_pred CCCCCC---cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 262 DIPGAK---EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~---~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+ |.+ ...+++.+...+...+++++|||+|++|+|.|..+...+.+||+
T Consensus 150 p--g~~~~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtl 200 (462)
T PRK06416 150 P--GIEIDGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTI 200 (462)
T ss_pred C--CCCCCCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 3 432 23457777777767789999999999999999999888878876
No 20
>PRK07846 mycothione reductase; Reviewed
Probab=99.88 E-value=3.5e-21 Score=178.81 Aligned_cols=191 Identities=25% Similarity=0.466 Sum_probs=152.9
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
++|+||||+||+|..+|.. ..|.++.++|+.. .|+.|.+.+|.|++....+......+.....++....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~---------~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 69 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT---------FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE 69 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC---------CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC
Confidence 3799999999999988755 4588999999642 7889999999999988888777777766666775422
Q ss_pred CccccccCHHHHHHHHHHHHHHhhH-HHHHH-HhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNW-VTRVM-LRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
...+||..+..+.....+.+.. ..... ++..+|+++.++..+.+...+.+ .+| +++.||+||+|||+.|+.
T Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v--~~g--~~~~~d~lViATGs~p~~ 142 (451)
T PRK07846 70 ---LDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRT--GDG--EEITADQVVIAAGSRPVI 142 (451)
T ss_pred ---CCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEE--CCC--CEEEeCEEEEcCCCCCCC
Confidence 2467999999888777666543 23344 67789999999988887766665 456 479999999999999999
Q ss_pred CCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 261 PDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 261 p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+++|.... .++++++..+...+++++|||+|++|+|.|..+...+.+|++
T Consensus 143 p~i~g~~~~~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl 194 (451)
T PRK07846 143 PPVIADSGVRYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTV 194 (451)
T ss_pred CCCCCcCCccEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 999986443 456777777777889999999999999999999888888886
No 21
>PRK13748 putative mercuric reductase; Provisional
Probab=99.87 E-value=6.4e-21 Score=182.32 Aligned_cols=198 Identities=26% Similarity=0.422 Sum_probs=150.2
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHH-cCCc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVA-YGWE 180 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 180 (312)
.++|++|||+||+|+.+|..+.+.|.++.++|+.. .|+.|.+.+|.|++....+............ +|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~---------~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~ 167 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT---------IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIA 167 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc---------ceeeccccCccccHHHHHHHHHHHHHhcccccCCcc
Confidence 36899999999999999999999999999999642 7888999999999987766655544433221 2432
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcC-CceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDK-KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP 258 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p 258 (312)
.. ....+|..+..+.......+... ....+... +|+++.+.+.+.+...+.+++.+|+..++.||+||+|||+.|
T Consensus 168 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p 244 (561)
T PRK13748 168 AT---VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASP 244 (561)
T ss_pred CC---CCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 11 23467888777766555444321 22334444 899999998888888888887777556799999999999999
Q ss_pred CCCCCCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 259 NYPDIPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 259 ~~p~~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
..|++||.+.. .+++.........+++++|||+|++|+|.|..+...+.+|+|
T Consensus 245 ~~p~i~g~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtl 298 (561)
T PRK13748 245 AVPPIPGLKETPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTI 298 (561)
T ss_pred CCCCCCCCCccceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 99999998642 344444444556788999999999999999999988889887
No 22
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.87 E-value=1.9e-20 Score=174.56 Aligned_cols=196 Identities=29% Similarity=0.475 Sum_probs=158.8
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCCc
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNV 184 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 184 (312)
+++|||+|++|+.+|..+.+.|.++.++|+.. .|+.|.+.+|.|++....+............+|.....
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~---------~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~- 71 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD---------LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPN- 71 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc---------ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccC-
Confidence 68999999999999999999999999999742 67889999999999888777666666555556654321
Q ss_pred cccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCC
Q psy11185 185 KSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIP 264 (312)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~ 264 (312)
....+||..+..+.....+.+.......+...+++++.+...+.+...+.++..+| ..++.||+||+|||+.|+.|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~-~~~~~~d~lviATGs~p~~~p~~ 150 (458)
T PRK06912 72 GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDK-EEVVDAEQFIIAAGSEPTELPFA 150 (458)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCC-cEEEECCEEEEeCCCCCCCCCCC
Confidence 12467898888887777666655666677888999999998888888888877555 35799999999999999888888
Q ss_pred CCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 265 GAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 265 g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+.+. ..+++.+...+...+++++|||+|++|+|.|..+...+.+|++
T Consensus 151 ~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtl 198 (458)
T PRK06912 151 PFDGKWIINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTI 198 (458)
T ss_pred CCCCCeEEcchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 7643 4677778888778889999999999999999998887778876
No 23
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.87 E-value=1.2e-20 Score=180.46 Aligned_cols=200 Identities=32% Similarity=0.425 Sum_probs=159.8
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH---HHcC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA---VAYG 178 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 178 (312)
.+||++|||+|++|+.+|..+.+.|.++.++|... ..+|+.|.+.+|.|++....+......+... ..+|
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~-------~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~G 187 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDD-------DSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYG 187 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-------CccccceeEeCCcchHHHHHHHHHHHHHHhccccccCC
Confidence 47999999999999999999999999999999521 1389999999999999988888777766543 2344
Q ss_pred Ccc---C------------CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCC-------ceEEeceeEEeeCCeEEEE
Q psy11185 179 WEI---P------------NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK-------VDYLNALGKFIDQHSVEAT 236 (312)
Q Consensus 179 ~~~---~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------V~~~~~~~~~~~~~~~~v~ 236 (312)
+.. + ......+||..+..+.....+.+.......++..+ |+++.+...+.++..+.+.
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~ 267 (659)
T PTZ00153 188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267 (659)
T ss_pred eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence 320 0 00124679999999999888887766666676654 8999998888888877765
Q ss_pred ecCCCeEEEEcCeEEEccCCCCCCCCCCCCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 237 MKNGEKKTLTAENILIATGGRPNYPDIPGAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 237 ~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
.+| .++.||+||||||+.|..|++++.+. ..++++++..+...+++++|||||++|+|.|..+...+++||+
T Consensus 268 -~~g--~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTL 340 (659)
T PTZ00153 268 -KSG--KEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVS 340 (659)
T ss_pred -cCC--EEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 356 57999999999999999988766543 3667777777777889999999999999999998888888887
No 24
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.87 E-value=3.1e-20 Score=173.39 Aligned_cols=198 Identities=25% Similarity=0.394 Sum_probs=157.9
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCCc
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNV 184 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 184 (312)
|++|||+|++|+.+|..+.+.+.++.++|+.. .|+.|.+.+|.|++....+......+.....+|......
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~---------~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~ 73 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG---------LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDD 73 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC---------CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccC
Confidence 78999999999999999999999999999632 588899999999998777666666666655666543211
Q ss_pred cccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEE----eeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185 185 KSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKF----IDQHSVEATMKNGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~----~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
....+||..+..+.....+.+.......++..+|+++.+++.. .+...+.+++.+|+..++.||+||+|||+.|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 74 GEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRI 153 (466)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence 1346789998888888777666667777888899999998777 567788888877754579999999999999987
Q ss_pred CCCCCCC-cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 261 PDIPGAK-EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 261 p~~~g~~-~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+.++.. ...+++.++......+++++|||+|.+|+|.|..|...+.+|++
T Consensus 154 ~p~~~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtl 205 (466)
T PRK07845 154 LPTAEPDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTL 205 (466)
T ss_pred CCCCCCCCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 7665443 23556666666667789999999999999999999988888886
No 25
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.87 E-value=3.4e-20 Score=173.07 Aligned_cols=195 Identities=32% Similarity=0.516 Sum_probs=150.8
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH--HHHcCCc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD--AVAYGWE 180 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 180 (312)
++|++|||+||+|+.+|..+.+.|.+++++|+.. ..|+.|.+.+|.|++....+....+.+.. ...++..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~--------~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~ 74 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS--------TLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIE 74 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC--------ceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcc
Confidence 4899999999999999999999999999999632 27888999999999987766554443332 2334433
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
. ...++|.....+.......+.......++..+|+++.+.....+...+.+...+|+..++.||+||||||+.|.
T Consensus 75 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~- 149 (466)
T PRK06115 75 V----KPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT- 149 (466)
T ss_pred c----cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC-
Confidence 2 13568888777776666666556667777889999999887777778888777775567999999999999885
Q ss_pred CCCCCCC---cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 261 PDIPGAK---EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 261 p~~~g~~---~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
++||.. .+.+++.+++.....+++++|||+|.+|+|.|..+...+.+|++
T Consensus 150 -~ipg~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtl 202 (466)
T PRK06115 150 -PLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTV 202 (466)
T ss_pred -CCCCCCCCCCeEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 345542 23566777766666789999999999999999999888888886
No 26
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.86 E-value=4e-20 Score=172.81 Aligned_cols=192 Identities=34% Similarity=0.553 Sum_probs=148.3
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN 183 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 183 (312)
+|++|||+||+|+.+|..+.+.|.++.++|+.. .|+.|.+.+|.|++....+.......... .++....
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~---------~GG~c~n~gciPsk~l~~~~~~~~~~~~~-~~g~~~~- 69 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP---------LGGTCVNVGCVPSKMLLRAAEVAHYARKP-PFGGLAA- 69 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc---------ccCCeeeecEEccHHHHHHHHHHHHhhcc-CcccccC-
Confidence 699999999999999999999999999999632 67889999999998877666554444432 2443211
Q ss_pred ccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185 184 VKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD 262 (312)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~ 262 (312)
...++|..+..........+.. .....++..+|+++.++....+...+.+ .+| ...+.+|+||+|||+.|+.|+
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v--~~g-~~~~~~~~lIiATGs~p~~p~ 144 (463)
T TIGR02053 70 --TVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKV--DLG-REVRGAKRFLIATGARPAIPP 144 (463)
T ss_pred --CCccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEE--cCC-eEEEEeCEEEEcCCCCCCCCC
Confidence 2467888888777666555543 2445567789999998877766665555 344 246899999999999999999
Q ss_pred CCCCCcc-eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 263 IPGAKEH-CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 263 ~~g~~~~-~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+||.+.. .+++.++......+++++|||+|.+|+|+|..+...+.+|++
T Consensus 145 i~G~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtl 194 (463)
T TIGR02053 145 IPGLKEAGYLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTI 194 (463)
T ss_pred CCCcccCceECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 9998654 466777776666788999999999999999999988888886
No 27
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.86 E-value=9e-20 Score=170.47 Aligned_cols=196 Identities=37% Similarity=0.565 Sum_probs=153.4
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
.+|++|||+|++|+.+|..+.+.|.+++++|+.. .|+.|.+.+|.|++...........+.....++....
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~~---------~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~ 71 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEY---------LGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVE 71 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC---------CCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCC
Confidence 3799999999999999999999999999999722 5778999999998876655554444444444554322
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD 262 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~ 262 (312)
...++|..+..+.......+.......++..+++++.+.....+...+.+++.+|. .++.||+||+|||+.|+.|+
T Consensus 72 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~-~~~~~d~lVlAtG~~p~~~~ 147 (461)
T TIGR01350 72 ---NVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGE-ETLTAKNIIIATGSRPRSLP 147 (461)
T ss_pred ---CCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEcCCCCCCCCC
Confidence 24578888877776666666555666777889999999887778888888876652 57999999999999999888
Q ss_pred CC-CCCc-ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 263 IP-GAKE-HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 263 ~~-g~~~-~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
++ +... .++++.+...+...+++++|||+|.+|+++|..+...+.+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl 198 (461)
T TIGR01350 148 GPFDFDGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTV 198 (461)
T ss_pred CCCCCCCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 76 4332 4667777777777789999999999999999999888888876
No 28
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.86 E-value=1.1e-19 Score=169.87 Aligned_cols=194 Identities=28% Similarity=0.487 Sum_probs=146.6
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH-HHHcCCcc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD-AVAYGWEI 181 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~ 181 (312)
++|++|||+||+|+.+|..+.+.|.+++++|+. ..|+.|.+.+|.|++...........+.. ...++..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~---------~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~- 73 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK---------YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS- 73 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC---------CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-
Confidence 589999999999999999999999999999964 26888999999998876654443333332 2334432
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP 261 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p 261 (312)
. ...+++..+..+.....+.........+...+|+.+.+...+.+...+.+...+|+..++.||+||+|||+.|+.|
T Consensus 74 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~ 150 (466)
T PRK07818 74 -G--EVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL 150 (466)
T ss_pred -c--CcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC
Confidence 1 2457888877776666555544555556677999999888888888888887777556899999999999999765
Q ss_pred CCCCCC--cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 262 DIPGAK--EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~--~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
||.+ ...+++.+.......+++++|||+|.+|+|.|..++..+.+|+|
T Consensus 151 --pg~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtl 200 (466)
T PRK07818 151 --PGTSLSENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTI 200 (466)
T ss_pred --CCCCCCCcEEchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 4432 23455555444455788999999999999999999988888886
No 29
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.85 E-value=1.3e-19 Score=169.75 Aligned_cols=202 Identities=27% Similarity=0.365 Sum_probs=149.6
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH-HHcCCcc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA-VAYGWEI 181 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ 181 (312)
++|++|||+|++|+.+|..+.+.+.+++++|+.. +..+-...|+.|.+.+|.|++...........+... ..++...
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~--~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWK--NPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEeccc--CCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 6899999999999999999999999999999721 111122478889999999987766555444444332 3455432
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee----CCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID----QHSVEATMKNGEKKTLTAENILIATGGR 257 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~----~~~~~v~~~~G~~~~i~ad~vVlAtG~~ 257 (312)
. ...+||..+..+.......+.......++..+|+++.++..+.+ .+.+.+...++ .++.||+||+|||+.
T Consensus 82 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~--~~~~~d~lViATGs~ 156 (475)
T PRK06327 82 D---GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDE--TVITAKHVIIATGSE 156 (475)
T ss_pred C---CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCC--eEEEeCEEEEeCCCC
Confidence 2 24578888888877766666556666777889999998877666 55565554444 589999999999999
Q ss_pred CCCCCCCCC-CcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 258 PNYPDIPGA-KEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 258 p~~p~~~g~-~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+.|+..+. ....+++.+...+...+++|+|||+|++|+|.+..+...+.+|+|
T Consensus 157 p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtl 211 (475)
T PRK06327 157 PRHLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTI 211 (475)
T ss_pred CCCCCCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 976543332 223566676777667789999999999999999998888888886
No 30
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.85 E-value=1.1e-19 Score=169.83 Aligned_cols=190 Identities=34% Similarity=0.544 Sum_probs=147.7
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
++|+||||+|++|+.+|..+.+.+.+++++|+. ..|+.|...+|.|++...........+.....++....
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~---------~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~ 73 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG---------PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHAD 73 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC---------ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 589999999999999999999999999999972 26888999999999877766655555555555664322
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHH-HHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVT-RVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p 261 (312)
...+++..+..+.......+.... ...+...+++++.+.....+.+.+.+ ++ .++.||+||+|||+. .|
T Consensus 74 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v---~~--~~~~~d~lIiATGs~--~p 143 (460)
T PRK06292 74 ---GPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV---NG--ERIEAKNIVIATGSR--VP 143 (460)
T ss_pred ---CCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEeCCCC--CC
Confidence 246788888888887777665544 45566789999988877777766655 55 679999999999998 44
Q ss_pred CCCCCC----cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 262 DIPGAK----EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~----~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
++||.. ...+++.+...+...+++++|||+|.+|+|.|..+...+.+|++
T Consensus 144 ~ipg~~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtl 197 (460)
T PRK06292 144 PIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTV 197 (460)
T ss_pred CCCCCcccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 556552 22456777777777889999999999999999998888888886
No 31
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.85 E-value=6.8e-20 Score=170.37 Aligned_cols=191 Identities=25% Similarity=0.475 Sum_probs=146.3
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
+||+||||+|++|+.++.. ..|.++.++|+.. .|+.|.+++|.|++....+......+.....++....
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~---------~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 70 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT---------FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE 70 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC---------CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC
Confidence 5899999999999888644 4688999999642 7899999999999999888887777776666765422
Q ss_pred CccccccCHHHHHHHHHH-HHHHhhHH-HHHHH--hcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185 183 NVKSVQHNWANLREAVQN-HVKSVNWV-TRVML--RDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP 258 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p 258 (312)
...+||..+..+... ....+... ..... +..+|+++.++..+.+.+.+.+ .+| .++.||+||+|||+.|
T Consensus 71 ---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~--~~g--~~~~~d~lIiATGs~p 143 (452)
T TIGR03452 71 ---IDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRT--GDG--EEITGDQIVIAAGSRP 143 (452)
T ss_pred ---CCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEE--CCC--cEEEeCEEEEEECCCC
Confidence 245799999988866 44433221 12222 3479999999988777666555 456 4799999999999999
Q ss_pred CCCCCCCCC-cceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 259 NYPDIPGAK-EHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 259 ~~p~~~g~~-~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
..|+..+.. ....++.++..+...+++++|||+|++|+|.|..+...+.+|++
T Consensus 144 ~~p~~~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl 197 (452)
T TIGR03452 144 YIPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTI 197 (452)
T ss_pred CCCCCCCCCCCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 888754432 23567777777777789999999999999999999888888886
No 32
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.84 E-value=2.2e-19 Score=166.73 Aligned_cols=181 Identities=32% Similarity=0.454 Sum_probs=138.0
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
++|++|||+||+|+.+|..+.+.+.+++++|+... ..|+.|...+|.|++....+...
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~-------~~GG~c~~~gciP~k~~~~~~~~--------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA-------MYGGTCINIGCIPTKTLLVAAEK--------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc-------ccceeeecCccccchHhhhhhhc---------------
Confidence 58999999999999999999999999999997431 25888888899887765443221
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD 262 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~ 262 (312)
.++|..+..+.......+.......+...+|+++.++..+.+...+.++..++ ..++.||+||+|||+.|+.|+
T Consensus 61 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~-~~~~~~d~vViATGs~~~~p~ 134 (438)
T PRK07251 61 -----NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDE-KIELTAETIVINTGAVSNVLP 134 (438)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCC-cEEEEcCEEEEeCCCCCCCCC
Confidence 13555555544443333333334556778999999888777777777765332 357999999999999999999
Q ss_pred CCCCCc--ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 263 IPGAKE--HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 263 ~~g~~~--~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+||... ..+++.++..+...+++|+|||+|.+|+|.|..++..+.+|++
T Consensus 135 i~G~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtl 185 (438)
T PRK07251 135 IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTV 185 (438)
T ss_pred CCCcCCCCcEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 999743 3567777777767789999999999999999998888888876
No 33
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.83 E-value=9.1e-21 Score=173.44 Aligned_cols=188 Identities=21% Similarity=0.256 Sum_probs=149.4
Q ss_pred hhhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 19 VDSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 19 ~~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
-.||+|+|++|+++|++|||+|| +++|+.+|+++++.+.+.|++.|+++++++++++++...++ +.+.++++..
T Consensus 182 G~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~---- 256 (454)
T COG1249 182 GYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG-VLVTLEDGEG---- 256 (454)
T ss_pred CHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe-EEEEEecCCC----
Confidence 45999999999999999999999 69999999999999999999999999999999999875554 7788877632
Q ss_pred CCccccccEEEEecCc----chHHHHHHHHHCCCc-EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185 98 NTHKYDYDLLVLGGGS----GGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK 172 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~----~gl~~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~ 172 (312)
.++++|.++++.|+ .++.+.....+.+.+ .+.+|..++|+.|+|||+||++... .+.|.+..+++...
T Consensus 257 --~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~-----~Lah~A~~eg~iaa 329 (454)
T COG1249 257 --GTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGP-----MLAHVAMAEGRIAA 329 (454)
T ss_pred --CEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCc-----ccHhHHHHHHHHHH
Confidence 26789999999997 345555555555553 6888888888899999999954443 36788888888888
Q ss_pred HHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEece
Q psy11185 173 DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNAL 224 (312)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~~ 224 (312)
.+. ++. .....|+..+|..+|+.|+....+ .+.++.+.++++....
T Consensus 330 ~~i-~g~-----~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~ 376 (454)
T COG1249 330 ENI-AGG-----KRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGK 376 (454)
T ss_pred HHH-hCC-----CCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEE
Confidence 876 331 135678889999999998876663 4667777777764443
No 34
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.83 E-value=6.2e-19 Score=163.80 Aligned_cols=181 Identities=27% Similarity=0.429 Sum_probs=134.4
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
.+|++|||+|++|+.+|..+.+.+.+++++|+.. +..|+.|.+.+|.|++.......
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~-------~~~GG~~~~~gcip~k~l~~~~~---------------- 59 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN-------AMYGGTCINIGCIPTKTLVHDAQ---------------- 59 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC-------CccceeEeeccccchHHHHHHhc----------------
Confidence 5899999999999999999999999999999743 13588888899988775432211
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHH-hcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVML-RDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p 261 (312)
...+|.....+.....+.+.......+ +..+++++.+...+++...+.+.+.+|. .++.||+||+|||+.|..|
T Consensus 60 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~-~~~~~d~lviATGs~p~~p 134 (441)
T PRK08010 60 ----QHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGN-LEIHGEKIFINTGAQTVVP 134 (441)
T ss_pred ----cCCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCe-EEEEeCEEEEcCCCcCCCC
Confidence 012444333333222222221122233 3458999999888888888888877762 3699999999999999999
Q ss_pred CCCCCCc--ceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 262 DIPGAKE--HCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~--~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
++||.+. ..+++..+......+++++|||+|.+|+|.|..+...+.+|++
T Consensus 135 ~i~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtl 186 (441)
T PRK08010 135 PIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTI 186 (441)
T ss_pred CCCCccCCCCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 9999753 2456666776667788999999999999999999988888886
No 35
>KOG1335|consensus
Probab=99.82 E-value=7.2e-19 Score=151.81 Aligned_cols=197 Identities=35% Similarity=0.547 Sum_probs=167.3
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH--HHHcCC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD--AVAYGW 179 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~ 179 (312)
.++|++|||+||.|..+|..+.+.|.....+|+.. ..|+.|.+.+|.|++.........+.+.. ...+|.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~--------~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi 109 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG--------TLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGI 109 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC--------ccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCc
Confidence 47999999999999999999999999999999754 38899999999999877766655555443 333454
Q ss_pred ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185 180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN 259 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~ 259 (312)
... +..+|.+.+..........+...+...+++++|+++.++..+.++..+.+...||+..++.++.+|+|||+.-
T Consensus 110 ~vs---~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV- 185 (506)
T KOG1335|consen 110 DVS---SVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEV- 185 (506)
T ss_pred ccc---ceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCcc-
Confidence 433 4778999999998888888888899999999999999999999999999999999889999999999999853
Q ss_pred CCCCCCC---CcceeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 260 YPDIPGA---KEHCISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 260 ~p~~~g~---~~~~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+++||. +..+.++...+.+...|++.+|||+|.+|.|...-..+.+++||+
T Consensus 186 -~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~ 239 (506)
T KOG1335|consen 186 -TPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTV 239 (506)
T ss_pred -CCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEE
Confidence 346666 334788899999999999999999999999888887777789986
No 36
>KOG1335|consensus
Probab=99.81 E-value=2.9e-20 Score=160.37 Aligned_cols=198 Identities=18% Similarity=0.214 Sum_probs=157.0
Q ss_pred hhhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 19 VDSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 19 ~~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
-.||+|++..+.++|.+||++|. +++.+.+|.+++..+++.|+++||+|+++++++..+.+.++.+.+.+.+.++.+.
T Consensus 220 G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~- 298 (506)
T KOG1335|consen 220 GYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKK- 298 (506)
T ss_pred ceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCce-
Confidence 46999999999999999999998 7999999999999999999999999999999999998888778888887666554
Q ss_pred CCccccccEEEEecCc----chHHHHHHHHHCCCcE-EEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185 98 NTHKYDYDLLVLGGGS----GGLAAAKEAAAHGRKV-IVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK 172 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~----~gl~~a~~~~~~~~~~-~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~ 172 (312)
+++++|+++|+.|+ .||.+.....+.+.+. +.++...+|..|+||++||+. ..+ .+.|.+..++....
T Consensus 299 --~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~-~gp----MLAhkAeeegI~~V 371 (506)
T KOG1335|consen 299 --ETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVT-LGP----MLAHKAEEEGIAAV 371 (506)
T ss_pred --eEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceEEecccC-Ccc----hhhhhhhhhchhhe
Confidence 78999999999996 6777666555554443 666777799999999999954 333 45666666666554
Q ss_pred HHHHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEeceeEEeeCC
Q psy11185 173 DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNALGKFIDQH 231 (312)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~~~~~~~~~ 231 (312)
....-+ ..+.++..+|..++++|+.... ..++++++.||.|-.+...+..+.
T Consensus 372 E~i~g~-------~~hv~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkfpF~aNs 424 (506)
T KOG1335|consen 372 EGIAGG-------HGHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANS 424 (506)
T ss_pred eeeccc-------CcccccCCCCceeecccceeeeccchhhHHhcCcceEeeeccccccc
Confidence 433212 3577888899999999985544 577889999999977765554433
No 37
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.1e-17 Score=152.56 Aligned_cols=188 Identities=20% Similarity=0.239 Sum_probs=117.6
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCc-EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE 180 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (312)
-..|++|||+|++|++++..|.+.+.. ++++|+... .|+.... ..++.-... ......... ..+
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~--------~Gg~W~~-~ry~~l~~~----~p~~~~~~~--~~p 71 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD--------VGGTWRY-NRYPGLRLD----SPKWLLGFP--FLP 71 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC--------cCCcchh-ccCCceEEC----CchheeccC--CCc
Confidence 467999999999999999999999998 999998653 3332111 000000000 000000000 111
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece--e-EEeeCCeEEEEecCCCeEEEEcCeEEEccC--
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL--G-KFIDQHSVEATMKNGEKKTLTAENILIATG-- 255 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~--~-~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG-- 255 (312)
++ ......++.....++..+.+.+.. ...+.+.... + ...+...|+++.++|...++.||.||+|||
T Consensus 72 ~~-~~~~~~~~~~~~~y~~~~~~~y~~-------~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~ 143 (443)
T COG2072 72 FR-WDEAFAPFAEIKDYIKDYLEKYGL-------RFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHL 143 (443)
T ss_pred cC-CcccCCCcccHHHHHHHHHHHcCc-------eeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCC
Confidence 11 012233344444554444443331 2222221111 1 122345788888777443488999999999
Q ss_pred CCCCCCCCCCCCcc---eeccccccCC-CCCCCeEEEEcCchhhHHHHHHhhcCceeeeeC
Q psy11185 256 GRPNYPDIPGAKEH---CISSDDIFSL-EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH 312 (312)
Q Consensus 256 ~~p~~p~~~g~~~~---~~~~~~~~~~-~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~~ 312 (312)
+.|++|+++|.+.| ..|++++.+. .+.+|+|+|||+|+||++.+.+|...+++||++
T Consensus 144 ~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~ 204 (443)
T COG2072 144 SEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLS 204 (443)
T ss_pred CCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEE
Confidence 68999999999887 5677666655 567889999999999999999999998999974
No 38
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.74 E-value=5.8e-18 Score=159.00 Aligned_cols=196 Identities=20% Similarity=0.314 Sum_probs=121.0
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccc--cccchhhHHHHHHHHHHHHHHHHHc-CCcc
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN--VGCIPKKLMHQAALLGEAIKDAVAY-GWEI 181 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 181 (312)
.++|||+|++||.++..+.+.|.+++++|+ ....+++|...+.... ...+++.....+ + ....| .+++
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~--~~~iGG~W~~~~~~~~g~~~~y~sl~~n~s----k---~~~~fsdfp~ 73 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEK--SDDIGGLWRYTENPEDGRSSVYDSLHTNTS----K---EMMAFSDFPF 73 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEES--SSSSSGGGCHSTTCCCSEGGGSTT-B-SS-----G---GGSCCTTS-H
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEec--CCCCCccCeeCCcCCCCccccccceEEeeC----c---hHhcCCCcCC
Confidence 589999999999999999999999999996 4566777765431100 000000000000 0 00001 2233
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeE--EeeCCeEEEEe-cCCCeEEEEcCeEEEccC--C
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGK--FIDQHSVEATM-KNGEKKTLTAENILIATG--G 256 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~--~~~~~~~~v~~-~~G~~~~i~ad~vVlAtG--~ 256 (312)
+...+.++....+.+|+..+++.++..-.. +.+.++..-... ......|.+++ .+|+.++..+|+||+||| .
T Consensus 74 p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I---~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 74 PEDYPDFPSHSEVLEYLESYAEHFGLRKHI---RFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp CCCCSSSEBHHHHHHHHHHHHHHTTGGGGE---ETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhCCcceE---EEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence 433356778899999999999887642111 222222221110 00123566665 455556677999999999 5
Q ss_pred CCCCCC--CCCCCcc---eeccccccCCC-CCCCeEEEEcCchhhHHHHHHhhcCceeeeeC
Q psy11185 257 RPNYPD--IPGAKEH---CISSDDIFSLE-KPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH 312 (312)
Q Consensus 257 ~p~~p~--~~g~~~~---~~~~~~~~~~~-~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~~ 312 (312)
.|++|. +||++.| .+|+.++.... +.+|||+|||+|.||+|+|.+|+..+++|++|
T Consensus 151 ~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s 212 (531)
T PF00743_consen 151 KPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLS 212 (531)
T ss_dssp CESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEE
T ss_pred CCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEE
Confidence 688885 8998776 68888887664 57889999999999999999999999999875
No 39
>KOG0405|consensus
Probab=99.73 E-value=3.7e-18 Score=145.75 Aligned_cols=171 Identities=23% Similarity=0.322 Sum_probs=133.1
Q ss_pred hhhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 19 VDSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 19 ~~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
-+||+|+|..|+.+|++++|+-| +.+|+.||+++++.+.++|..+||+++.++.++++.+..++-..+....+
T Consensus 198 GYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~------ 271 (478)
T KOG0405|consen 198 GYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHG------ 271 (478)
T ss_pred ceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEecc------
Confidence 36999999999999999999999 69999999999999999999999999999999999886555223333333
Q ss_pred CCccccccEEEEecCcc----hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185 98 NTHKYDYDLLVLGGGSG----GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK 172 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~~----gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~ 172 (312)
....+|.++|+.|+. +|.+.....+... ..+++|++++|+.|+||+.||.|.... +.+.+...++.+.
T Consensus 272 --~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~-----LTPVAiaagr~la 344 (478)
T KOG0405|consen 272 --TIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKIN-----LTPVAIAAGRKLA 344 (478)
T ss_pred --ccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCcEe-----cchHHHhhhhhHH
Confidence 344699999999974 4554444444433 358889999999999999999876653 4445666677666
Q ss_pred HHHHcCCccCCccccccCHHHHHHHHHHHHHHhhH
Q psy11185 173 DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW 207 (312)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (312)
... |+.. .+.++||+.++..+|++|..-..
T Consensus 345 ~rl-F~~~----~~~kldY~nVp~vVFshP~igtV 374 (478)
T KOG0405|consen 345 NRL-FGGG----KDTKLDYENVPCVVFSHPPIGTV 374 (478)
T ss_pred HHh-hcCC----CCCccccccCceEEEecCCcccc
Confidence 643 5532 35789999999999999875444
No 40
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.3e-16 Score=137.92 Aligned_cols=162 Identities=23% Similarity=0.251 Sum_probs=110.3
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCc-EEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
.+|++|||+||+|+.+|.++.+.+.+ .++++...+...+..+. + ..+. .++
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~--~-veny-----------------------pg~-- 54 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT--D-VENY-----------------------PGF-- 54 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce--e-ecCC-----------------------CCC--
Confidence 58999999999999999999999988 67777643322111111 1 0000 010
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCC--eEEEEecCCCeEEEEcCeEEEccCCCCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQH--SVEATMKNGEKKTLTAENILIATGGRPN 259 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~--~~~v~~~~G~~~~i~ad~vVlAtG~~p~ 259 (312)
+.......+... +..++...++++....+..++.. .+.+++.+| . +.+++||+|||..++
T Consensus 55 ----~~~~~g~~L~~~-----------~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~--~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 55 ----PGGILGPELMEQ-----------MKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKG--T-YEAKAVIIATGAGAR 116 (305)
T ss_pred ----ccCCchHHHHHH-----------HHHHHhhcCeEEEEEEEEEEeecCceEEEEECCC--e-EEEeEEEECcCCccc
Confidence 011222223222 22344566777776555544433 688999888 3 999999999999999
Q ss_pred CCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 260 YPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 260 ~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
.|.+||...| .+.+..++. .+.+|+|+|||||+||++.|.+|+..+++||+
T Consensus 117 ~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtl 171 (305)
T COG0492 117 KLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTL 171 (305)
T ss_pred CCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEE
Confidence 9988876543 123333344 46778999999999999999999999999987
No 41
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.71 E-value=7.1e-17 Score=149.67 Aligned_cols=195 Identities=19% Similarity=0.289 Sum_probs=117.5
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccc--cccchhh-HHHHHHHHHHHHHHH-----
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN--VGCIPKK-LMHQAALLGEAIKDA----- 174 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~--~~~~~~~-~~~~a~~~~~~~~~~----- 174 (312)
..+++|||+|++|+.+|..+.+.|.+++++|+... .++.|...+.... .+..+.. ..+.. ....+..+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~--vGG~W~~~~~~~~d~~~~~~~~~~~~s~--~Y~~L~tn~p~~~ 85 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ--VGGLWVYTPKSESDPLSLDPTRSIVHSS--VYESLRTNLPREC 85 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC--CcceeecCCCcCCCccccCCCCcccchh--hhhhhhccCCHhh
Confidence 57899999999999999999999999999997643 3445543221100 0000000 00000 00001101
Q ss_pred HHc-CCccCC-------ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCce--E-EeceeEEee--CCeEEEEecC--
Q psy11185 175 VAY-GWEIPN-------VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVD--Y-LNALGKFID--QHSVEATMKN-- 239 (312)
Q Consensus 175 ~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~-~~~~~~~~~--~~~~~v~~~~-- 239 (312)
..| .+++.. ..+.++....+..|+..+.+.+ ++. + .+..+..++ ...|.+++.+
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~f-----------gl~~~I~~~t~V~~V~~~~~~w~V~~~~~~ 154 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREF-----------KIEEMVRFETEVVRVEPVDGKWRVQSKNSG 154 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHc-----------CCcceEEecCEEEEEeecCCeEEEEEEcCC
Confidence 111 111111 0123445566666666555443 322 1 112222222 2456665543
Q ss_pred CCeEEEEcCeEEEccC--CCCCCCCCCCCCcc---eeccccccCCC-CCCCeEEEEcCchhhHHHHHHhhcCceeeeeC
Q psy11185 240 GEKKTLTAENILIATG--GRPNYPDIPGAKEH---CISSDDIFSLE-KPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH 312 (312)
Q Consensus 240 G~~~~i~ad~vVlAtG--~~p~~p~~~g~~~~---~~~~~~~~~~~-~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~~ 312 (312)
+...+..+|+||+||| +.|+.|+++|.+.+ .+|+.++.... +.+|+|+|||+|.||+++|.+|+..+++||++
T Consensus 155 ~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~ 233 (461)
T PLN02172 155 GFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIA 233 (461)
T ss_pred CceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEE
Confidence 3334678999999999 67999999998765 45666665543 46788999999999999999999999999974
No 42
>KOG1399|consensus
Probab=99.71 E-value=9.8e-17 Score=146.45 Aligned_cols=201 Identities=20% Similarity=0.233 Sum_probs=126.3
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
.-+++|||+|++||.+|..+.+.|..++++|+..+ .+++|..-..... ... +..........+.+... ..++++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~--iGGlW~y~~~~~~-~~s-s~Y~~l~tn~pKe~~~~--~dfpf~ 79 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD--IGGLWKYTENVEV-VHS-SVYKSLRTNLPKEMMGY--SDFPFP 79 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCC--ccceEeecCcccc-ccc-chhhhhhccCChhhhcC--CCCCCc
Confidence 45899999999999999999999999999997543 2333322210000 000 00000000000111111 122333
Q ss_pred Cc-cccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC--CC
Q psy11185 183 NV-KSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR--PN 259 (312)
Q Consensus 183 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~--p~ 259 (312)
.. ....++...+..|+..+++.|.......+...-+++..... +.|.+..+...+...+..+|.||+|||.+ |+
T Consensus 80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~---gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~ 156 (448)
T KOG1399|consen 80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK---GKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPR 156 (448)
T ss_pred ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC---CceeEEEecCCcceeEEEeeEEEEcccCcCCCC
Confidence 32 23457888999999999998885444433332222221110 34555554444324688899999999965 89
Q ss_pred CCCCCC--CCcc---eeccccccCC-CCCCCeEEEEcCchhhHHHHHHhhcCceeeeeC
Q psy11185 260 YPDIPG--AKEH---CISSDDIFSL-EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTIH 312 (312)
Q Consensus 260 ~p~~~g--~~~~---~~~~~~~~~~-~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~~ 312 (312)
+|.++| .+.| .+|+.++... .+..|+|+|||.|+||+|++.+++..++.|+++
T Consensus 157 ~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~ 215 (448)
T KOG1399|consen 157 IPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLS 215 (448)
T ss_pred CCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCccee
Confidence 999888 3354 5788888865 456788999999999999999998888877753
No 43
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.70 E-value=2.4e-17 Score=137.15 Aligned_cols=184 Identities=21% Similarity=0.267 Sum_probs=96.9
Q ss_pred EEEecCcchHHHHHHHHHCCCc-EEEEeccCCCCCCccccc-C--CcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 107 LVLGGGSGGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGL-G--GTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 107 vivg~G~~gl~~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~-G--d~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
+|||+|++|+++|..|.+.+.+ ++++|+... ..+.|.- . ......... ...................+. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~--~Gg~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~- 74 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDR--PGGVWRRYYSYTRLHSPSFF-SSDFGLPDFESFSFDDSPEWR--W- 74 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSS--STTHHHCH-TTTT-BSSSCC-TGGSS--CCCHSCHHHHHHHH--H-
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC--CCCeeEEeCCCCccccCccc-cccccCCcccccccccCCCCC--C-
Confidence 6999999999999999999998 899997532 2333331 0 000000000 000000000000000000000 0
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEE--eeCCeEEEEecCCCeEEEEcCeEEEccC--CC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKF--IDQHSVEATMKNGEKKTLTAENILIATG--GR 257 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~--~~~~~~~v~~~~G~~~~i~ad~vVlAtG--~~ 257 (312)
....+....+.+++..+.+.+ ++++..++ +.. .+...|.+++.++ +++.||.||+||| +.
T Consensus 75 --~~~~~~~~~v~~yl~~~~~~~-----------~l~i~~~~~V~~v~~~~~~w~v~~~~~--~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 75 --PHDFPSGEEVLDYLQEYAERF-----------GLEIRFNTRVESVRRDGDGWTVTTRDG--RTIRADRVVLATGHYSH 139 (203)
T ss_dssp --SBSSEBHHHHHHHHHHHHHHT-----------TGGEETS--EEEEEEETTTEEEEETTS---EEEEEEEEE---SSCS
T ss_pred --CcccCCHHHHHHHHHHHHhhc-----------CcccccCCEEEEEEEeccEEEEEEEec--ceeeeeeEEEeeeccCC
Confidence 012345555666555554433 33332222 211 1244588888888 7889999999999 48
Q ss_pred CCCCCCCC-CCcceeccccccCC-CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 258 PNYPDIPG-AKEHCISSDDIFSL-EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 258 p~~p~~~g-~~~~~~~~~~~~~~-~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+.|+++| .....+|+.++... ...+++|+|||+|.||++++..|...+++|++
T Consensus 140 p~~p~~~g~~~~~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~ 195 (203)
T PF13738_consen 140 PRIPDIPGSAFRPIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTL 195 (203)
T ss_dssp B---S-TTGGCSEEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEE
T ss_pred CCccccccccccceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEE
Confidence 88899999 44456677666554 45678899999999999999999999999987
No 44
>KOG4716|consensus
Probab=99.66 E-value=4.3e-17 Score=138.83 Aligned_cols=194 Identities=27% Similarity=0.414 Sum_probs=142.8
Q ss_pred hhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
-++|+|||.+|+.+|.+||++-||-+|++||+++++.+.+.|++.||+|...+.+.+++..+++.+.|..++..++..
T Consensus 207 ~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~-- 284 (503)
T KOG4716|consen 207 GYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEE-- 284 (503)
T ss_pred ceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeeccccccc--
Confidence 468999999999999999999999999999999999999999999999999999999998888877887766543322
Q ss_pred CccccccEEEEecCcchHHHHHHHHHCCC------cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGGLAAAKEAAAHGR------KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIK 172 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~gl~~a~~~~~~~~------~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~ 172 (312)
.+-++|.|+|+.|+.++.-...|-..|. +-+.++...+|+.|.|||+||..-..+ .+.+.+.+.++.++
T Consensus 285 -~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kp----ELTPvAIqsGrlLa 359 (503)
T KOG4716|consen 285 -GEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDKP----ELTPVAIQSGRLLA 359 (503)
T ss_pred -ccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCCc----ccchhhhhhchHHH
Confidence 3457999999999866543333322221 236677778999999999999776654 45566777788877
Q ss_pred HHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHHHH-----HHHhcCCceEEecee
Q psy11185 173 DAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTR-----VMLRDKKVDYLNALG 225 (312)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~gV~~~~~~~ 225 (312)
+.. |+.. ....||+.++..+|+-.+.-...+. ....+.+|+++++..
T Consensus 360 ~Rl-f~gs-----~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f 411 (503)
T KOG4716|consen 360 RRL-FAGS-----TQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYF 411 (503)
T ss_pred HHH-hcCc-----ceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEEeeccc
Confidence 755 3321 3567888888877776543332221 123344677776653
No 45
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.7e-16 Score=134.49 Aligned_cols=158 Identities=27% Similarity=0.413 Sum_probs=106.4
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcE-EEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKV-IVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~-~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
.||++|||+||+|-++|.+.++.|.+. ++-|. .|+....+-. -.+|- .
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer-----------fGGQvldT~~------------------IENfI-s- 259 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER-----------FGGQVLDTMG------------------IENFI-S- 259 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhh-----------hCCeeccccc------------------hhhee-c-
Confidence 589999999999999999999988863 55443 2221111000 00000 0
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe-----eCCeEEEEecCCCeEEEEcCeEEEccC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI-----DQHSVEATMKNGEKKTLTAENILIATG 255 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~-----~~~~~~v~~~~G~~~~i~ad~vVlAtG 255 (312)
....+.+.+...+ +...+...|++++.. .... ...-+.+++.+| -.+.++.+|+|||
T Consensus 260 ----v~~teGpkl~~al-----------e~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG--avLkaktvIlstG 322 (520)
T COG3634 260 ----VPETEGPKLAAAL-----------EAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG--AVLKARTVILATG 322 (520)
T ss_pred ----cccccchHHHHHH-----------HHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC--ceeccceEEEecC
Confidence 0111223333333 333444445543332 1111 134577889999 7899999999999
Q ss_pred CCCCCCCCCCCCcc-------eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 256 GRPNYPDIPGAKEH-------CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 256 ~~p~~p~~~g~~~~-------~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
++++...+||.++| |.||+..+ +.+|+|+|||||+||+|+|..|+--..+||+
T Consensus 323 ArWRn~nvPGE~e~rnKGVayCPHCDGPL---F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtl 382 (520)
T COG3634 323 ARWRNMNVPGEDEYRNKGVAYCPHCDGPL---FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTL 382 (520)
T ss_pred cchhcCCCCchHHHhhCCeeeCCCCCCcc---cCCceEEEECCCcchHHHHHhHHhhhheeee
Confidence 99999999999875 45655544 7899999999999999999999999999986
No 46
>PRK10262 thioredoxin reductase; Provisional
Probab=99.65 E-value=1e-14 Score=130.11 Aligned_cols=166 Identities=19% Similarity=0.250 Sum_probs=104.4
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW 179 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (312)
.+...|++|||+||+|+.+|..+.+.+.+++++|... .|+.+..... .+.+
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~---------~gg~~~~~~~--------------------~~~~ 53 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME---------KGGQLTTTTE--------------------VENW 53 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeec---------CCCceecCce--------------------ECCC
Confidence 4567899999999999999999999998888887432 1222211100 0111
Q ss_pred ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEe--eCCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185 180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFI--DQHSVEATMKNGEKKTLTAENILIATGGR 257 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~--~~~~~~v~~~~G~~~~i~ad~vVlAtG~~ 257 (312)
+. .+..++++.+..++..+ ....++++..+....+ ....++++.+++ .+.||+||+|||+.
T Consensus 54 --~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~~~~v~~~~~---~~~~d~vilAtG~~ 116 (321)
T PRK10262 54 --PG-DPNDLTGPLLMERMHEH-----------ATKFETEIIFDHINKVDLQNRPFRLTGDSG---EYTCDALIIATGAS 116 (321)
T ss_pred --CC-CCCCCCHHHHHHHHHHH-----------HHHCCCEEEeeEEEEEEecCCeEEEEecCC---EEEECEEEECCCCC
Confidence 10 01223444444443322 2223334433332222 234455654433 68999999999999
Q ss_pred CCCCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 258 PNYPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 258 p~~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+.|++||...+ ...+.........+++|+|||+|.+|+|.|..|+..+++|++
T Consensus 117 ~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtl 174 (321)
T PRK10262 117 ARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHL 174 (321)
T ss_pred CCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEE
Confidence 999999997543 122222233335678999999999999999999988888886
No 47
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.64 E-value=3.9e-16 Score=145.84 Aligned_cols=188 Identities=17% Similarity=0.167 Sum_probs=128.8
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|.+|+++|.+|||+++ +++|+.+++++++.+.+.|++.||++++++.+++++..+++ +.+.+.+...+ .
T Consensus 184 ~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~-v~v~~~~~~~g---~ 259 (466)
T PRK06115 184 VIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADG-VSLTLEPAAGG---A 259 (466)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCe-EEEEEEEcCCC---c
Confidence 4799999999999999999999 68999999999999999999999999999999999764333 44444321100 0
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA 174 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~ 174 (312)
...+++|.||++.|+.. +.+.......+.+.++++.+++|+.|+|||+||++... .+.+.+..++..+.++
T Consensus 260 ~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~IyA~GD~~~~~-----~la~~A~~~g~~aa~~ 334 (466)
T PRK06115 260 AETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGP-----MLAHKAEDEAVACIER 334 (466)
T ss_pred eeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCCCEEEeeecCCCc-----ccHHHHHHHHHHHHHH
Confidence 14689999999999632 22222112222233566888899999999999965432 4677888888888777
Q ss_pred HHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEec
Q psy11185 175 VAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNA 223 (312)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~ 223 (312)
. ++.. ..+++..++..+++.++....+ .+.+++..++++...
T Consensus 335 i-~~~~------~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~~~~~~ 377 (466)
T PRK06115 335 I-AGKA------GEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVG 377 (466)
T ss_pred H-cCCC------CCCCCCCCCeEEECCcccEEeeCCHHHHHHCCCCEEEE
Confidence 6 3311 1234445555555555543332 344555566665433
No 48
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.63 E-value=1.6e-14 Score=127.34 Aligned_cols=163 Identities=23% Similarity=0.251 Sum_probs=105.2
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN 183 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 183 (312)
+|++|||+|++|+.+|..+.+.+.+++++|+... |+.+..... . .. ++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---------gg~~~~~~~------------------~--~~--~~~ 49 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP---------GGQLTTTTE------------------V--EN--YPG 49 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC---------Ccceeeccc------------------c--cc--cCC
Confidence 5899999999999999999999999999996431 221111000 0 00 000
Q ss_pred ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCCCCCC
Q psy11185 184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGGRPNYP 261 (312)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p 261 (312)
. +..+....+.. .+...+++.++++....+..++ ...+.+++.+| .++.||+||+|||+.|+.|
T Consensus 50 ~-~~~~~~~~~~~-----------~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 50 F-PEGISGPELME-----------KMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDG--KEYTAKAVIIATGASARKL 115 (300)
T ss_pred C-CCCCChHHHHH-----------HHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCC--CEEEeCEEEECCCCCcccC
Confidence 0 00011112221 2223455668888665554443 23466777676 6899999999999999989
Q ss_pred CCCCCCcce----eccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 262 DIPGAKEHC----ISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~~----~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
.+||...+. ..+.........+++|+|||+|.+|++.+..+...+.+|++
T Consensus 116 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~ 169 (300)
T TIGR01292 116 GIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTL 169 (300)
T ss_pred CCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEE
Confidence 999875431 11212222223567899999999999999999888888876
No 49
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.62 E-value=3.8e-15 Score=140.92 Aligned_cols=164 Identities=26% Similarity=0.329 Sum_probs=108.8
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE 180 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (312)
...+|++|||+||+|+.+|..+.+.|.+++++++. .|+.+.....+ .+ ..++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~----------~GG~~~~~~~~----------------~~-~~~~- 260 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER----------FGGQVLDTMGI----------------EN-FISV- 260 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC----------CCCeeeccCcc----------------cc-cCCC-
Confidence 34689999999999999999999999999888642 34432211000 00 0000
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEeeC--CeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFIDQ--HSVEATMKNGEKKTLTAENILIATGGR 257 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~~--~~~~v~~~~G~~~~i~ad~vVlAtG~~ 257 (312)
....+..+..+ +...++..++++...+ +..++. ..+.+.+.+| .++.||.||+|||+.
T Consensus 261 ------~~~~~~~l~~~-----------l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g--~~i~a~~vViAtG~~ 321 (517)
T PRK15317 261 ------PETEGPKLAAA-----------LEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANG--AVLKAKTVILATGAR 321 (517)
T ss_pred ------CCCCHHHHHHH-----------HHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCC--CEEEcCEEEECCCCC
Confidence 11233333333 2344556677776543 444432 3567777777 579999999999999
Q ss_pred CCCCCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 258 PNYPDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 258 p~~p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+.|++||...+ .+.+.........+++|+|||||++|+++|..|...+++|+|
T Consensus 322 ~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtl 379 (517)
T PRK15317 322 WRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTV 379 (517)
T ss_pred cCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence 999999987544 111112222234577999999999999999999999889886
No 50
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.62 E-value=2.8e-15 Score=134.41 Aligned_cols=144 Identities=17% Similarity=0.121 Sum_probs=109.5
Q ss_pred hhhhhhhHhhhccCC-------------eEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeE
Q psy11185 20 DSGLECAGFLNGLGF-------------NATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLK 85 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~-------------~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~ 85 (312)
..|+|+|..|+++.. +|+|+|+ +++|+.|++++++++++.|+++||++++++.|++++.+ .
T Consensus 165 ~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~-----~ 239 (405)
T COG1252 165 PTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD-----G 239 (405)
T ss_pred hhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC-----c
Confidence 378899988877643 8999999 69999999999999999999999999999999999643 4
Q ss_pred EEEeeccccccCCCccccccEEEEecCcchHHHHHHH--HHCC--CcEEEEeccCCCCCCcccccCCccccccc-chhhH
Q psy11185 86 VQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEA--AAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVGC-IPKKL 160 (312)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~--~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~-~~~~~ 160 (312)
|++++++ +.++++.+||++|..+..+...+ .+.+ .++++.+..+..+.++||++|||+..... .-++.
T Consensus 240 v~~~~g~-------~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~t 312 (405)
T COG1252 240 VTLKDGE-------EEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPT 312 (405)
T ss_pred EEEccCC-------eeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCCh
Confidence 7777662 25899999999997666655543 3323 23455445556789999999997655442 22355
Q ss_pred HHHHHHHHHHHHHHH
Q psy11185 161 MHQAALLGEAIKDAV 175 (312)
Q Consensus 161 ~~~a~~~~~~~~~~~ 175 (312)
.+.|.+++..+..+.
T Consensus 313 AQ~A~Qqg~~~a~ni 327 (405)
T COG1252 313 AQAAHQQGEYAAKNI 327 (405)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666777777776664
No 51
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.61 E-value=4.6e-15 Score=141.27 Aligned_cols=162 Identities=22% Similarity=0.281 Sum_probs=105.8
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
.+|++|||+||+|+.+|..+.+.+.+++++|+.. .|+.+...... .. .+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~---------~GG~~~~~~~i--------------------~~--~p 52 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD---------FGGQITITSEV--------------------VN--YP 52 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC---------CCceEEecccc--------------------cc--CC
Confidence 4899999999999999999999999999999642 33322211100 00 00
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC--CeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ--HSVEATMKNGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~--~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
. ...+....+..++ ...+...++++....+..++. ..+.+.+.+| .+.+++||+|||++|+.
T Consensus 53 g--~~~~~~~~l~~~l-----------~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g---~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 53 G--ILNTTGPELMQEM-----------RQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG---DYKTLAVLIATGASPRK 116 (555)
T ss_pred C--CcCCCHHHHHHHH-----------HHHHHHcCCEEeccEEEEEEecCCEEEEEecCC---EEEEeEEEECCCCccCC
Confidence 0 0011122222222 233455678876655544432 2355666665 57899999999999999
Q ss_pred CCCCCCCcc----eeccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 261 PDIPGAKEH----CISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 261 p~~~g~~~~----~~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+++|.+.+ .+.+.........+++|+|||||++|+|.|..|...+.+|++
T Consensus 117 ~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtl 171 (555)
T TIGR03143 117 LGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTV 171 (555)
T ss_pred CCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEE
Confidence 999997532 111222222234678999999999999999999988888886
No 52
>PLN02546 glutathione reductase
Probab=99.61 E-value=2.2e-15 Score=142.54 Aligned_cols=182 Identities=23% Similarity=0.338 Sum_probs=126.5
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|.+|+++|.+|||+++ +++|+.+|+++++.+.+.|+++||++++++.+.+++...++.+.+...++
T Consensus 262 ~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g------- 334 (558)
T PLN02546 262 YIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG------- 334 (558)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe-------
Confidence 6999999999999999999999 58899999999999999999999999999999999764444333332211
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
....+|.||++.|+.. +.+.....+.+. ..+.+|++++|+.|+|||+||++... ...+.+..++..+..
T Consensus 335 -~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~-----~l~~~A~~~g~~~a~ 408 (558)
T PLN02546 335 -TVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRI-----NLTPVALMEGGALAK 408 (558)
T ss_pred -EEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCc-----ccHHHHHHHHHHHHH
Confidence 2334899999999632 112222223332 34788888999999999999976432 345567777777777
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceE
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDY 220 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~ 220 (312)
+. ++.. ....++..++..+|+.++....+ .+.++...++++
T Consensus 409 ~i-~g~~-----~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~ 450 (558)
T PLN02546 409 TL-FGNE-----PTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDV 450 (558)
T ss_pred HH-cCCC-----CCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCe
Confidence 65 3321 12234445556677766655443 344555555554
No 53
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.60 E-value=6.5e-15 Score=137.73 Aligned_cols=143 Identities=24% Similarity=0.324 Sum_probs=109.0
Q ss_pred hhhhhhhHhhhcc---CCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccc
Q psy11185 20 DSGLECAGFLNGL---GFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVR 95 (312)
Q Consensus 20 ~ig~E~A~~l~~~---g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~ 95 (312)
.+|+|+|.+|+.+ |.+|||+++ +++|+.+|+++++.+.+.|+++||++++++.+++++...++...+.+.++
T Consensus 197 ~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g---- 272 (486)
T TIGR01423 197 FISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESG---- 272 (486)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCC----
Confidence 5899999888766 999999999 58999999999999999999999999999999999764444345555443
Q ss_pred cCCCccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185 96 QDNTHKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA 170 (312)
Q Consensus 96 ~~~~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~ 170 (312)
..+++|.+|++.|+.. +.+.....+.+. ..+.+|+.++|+.|+|||+||++.. ....+.+..++..
T Consensus 273 ----~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~-----~~l~~~A~~qG~~ 343 (486)
T TIGR01423 273 ----KTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDR-----VMLTPVAINEGAA 343 (486)
T ss_pred ----CEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCCCCEEEeeecCCC-----cccHHHHHHHHHH
Confidence 4689999999999532 222211122222 3477888889999999999996532 2455667788888
Q ss_pred HHHHH
Q psy11185 171 IKDAV 175 (312)
Q Consensus 171 ~~~~~ 175 (312)
+.++.
T Consensus 344 aa~ni 348 (486)
T TIGR01423 344 FVDTV 348 (486)
T ss_pred HHHHH
Confidence 77766
No 54
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.60 E-value=7.2e-15 Score=136.72 Aligned_cols=167 Identities=23% Similarity=0.321 Sum_probs=119.5
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|++|||+++ +++|+.+|+++++.+.+.|+++||++++++.+++++...++.+.+.+.++.
T Consensus 176 ~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~------ 249 (450)
T TIGR01421 176 YIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGK------ 249 (450)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCc------
Confidence 4899999999999999999999 589999999999999999999999999999999998643333455554431
Q ss_pred CccccccEEEEecCcchH----HHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGGL----AAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~gl----~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
..+++|.||++.|+..- .+.....+.+. ..+.+|+.++|+.|+||++||++... ...+.+..+++.+..
T Consensus 250 -~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~-----~~~~~A~~~g~~aa~ 323 (450)
T TIGR01421 250 -SIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKV-----ELTPVAIAAGRKLSE 323 (450)
T ss_pred -EEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCc-----ccHHHHHHHHHHHHH
Confidence 35799999999996322 12211122222 34778888999999999999976432 345667788888777
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHH
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVK 203 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (312)
+..-+.. ...+++..++..+|+.++
T Consensus 324 ~i~~~~~-----~~~~~~~~~p~~~f~~p~ 348 (450)
T TIGR01421 324 RLFNGKT-----DDKLDYNNVPTVVFSHPP 348 (450)
T ss_pred HHhcCCC-----CCccCcccCCeEEeCCCc
Confidence 6522210 122344455555555544
No 55
>PTZ00058 glutathione reductase; Provisional
Probab=99.59 E-value=8.1e-15 Score=138.70 Aligned_cols=149 Identities=15% Similarity=0.220 Sum_probs=111.9
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.||+|+|.+|+++|++|||+++ +++|+.+|+++.+.+.+.|++.||++++++.+.+++...++.+.+.+.++.
T Consensus 247 ~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~------ 320 (561)
T PTZ00058 247 YIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGR------ 320 (561)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCC------
Confidence 5899999999999999999999 589999999999999999999999999999999998643333444443321
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc--------------------
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG-------------------- 154 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~-------------------- 154 (312)
..+++|.|+++.|+.. +.+...........+.+|++++|+.|+|||+||++....
T Consensus 321 -~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~ 399 (561)
T PTZ00058 321 -KYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLK 399 (561)
T ss_pred -EEEECCEEEECcCCCCCccccCccccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccc
Confidence 3689999999999632 222211111223457888889999999999999765211
Q ss_pred -------c--chhhHHHHHHHHHHHHHHHH
Q psy11185 155 -------C--IPKKLMHQAALLGEAIKDAV 175 (312)
Q Consensus 155 -------~--~~~~~~~~a~~~~~~~~~~~ 175 (312)
. ....+.+.+..+++.+..+.
T Consensus 400 ~~~~~~~~~~~~~~la~~A~~~g~~aa~ni 429 (561)
T PTZ00058 400 KKENTSGESYYNVQLTPVAINAGRLLADRL 429 (561)
T ss_pred cccccccccccCcCchHHHHHHHHHHHHHH
Confidence 0 02356677888888887776
No 56
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.59 E-value=1.3e-14 Score=137.12 Aligned_cols=164 Identities=24% Similarity=0.300 Sum_probs=106.1
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE 180 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (312)
...+|++|||+||+|+.+|..+.+.|.++++++.. .|+.+.....+ .+ ..++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~----------~GG~~~~~~~~----------------~~-~~~~- 261 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER----------IGGQVKDTVGI----------------EN-LISV- 261 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC----------CCCccccCcCc----------------cc-cccc-
Confidence 34689999999999999999999999999888642 34322111000 00 0000
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEee--CCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFID--QHSVEATMKNGEKKTLTAENILIATGGR 257 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~ 257 (312)
....+..+... +...+...++++...+ +..++ ...+.+++.+| ..+.||+||+|||+.
T Consensus 262 ------~~~~~~~l~~~-----------l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g--~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 262 ------PYTTGSQLAAN-----------LEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESG--EVLKAKSVIVATGAR 322 (515)
T ss_pred ------CCCCHHHHHHH-----------HHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCC--CEEEeCEEEECCCCC
Confidence 01122222222 2234455678876543 33332 33466777777 579999999999999
Q ss_pred CCCCCCCCCCcce----eccccccCCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 258 PNYPDIPGAKEHC----ISSDDIFSLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 258 p~~p~~~g~~~~~----~~~~~~~~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+.|++||...+. ..+.........+++|+|||||++|+|.|..|...+++|++
T Consensus 323 ~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtl 380 (515)
T TIGR03140 323 WRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTV 380 (515)
T ss_pred cCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEE
Confidence 9989999864331 11111111223577999999999999999999988888886
No 57
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.59 E-value=4.8e-15 Score=138.63 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=126.5
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+|||+++ +++|+.+|+++++.+.+.|++.||++++++.+++++..++ .+.+.+.++
T Consensus 185 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~-~~~v~~~~g------- 256 (461)
T PRK05249 185 VIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDD-GVIVHLKSG------- 256 (461)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCC-eEEEEECCC-------
Confidence 4899999999999999999999 5899999999999999999999999999999999976433 344555443
Q ss_pred CccccccEEEEecCcchH----HHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGGL----AAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~gl----~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
..+++|.||++.|+..- .+.....+.+ ...+.+|..++|+.|+||++||++... ...+.+..++..+..
T Consensus 257 -~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~-----~~~~~A~~~g~~aa~ 330 (461)
T PRK05249 257 -KKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP-----SLASASMDQGRIAAQ 330 (461)
T ss_pred -CEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCc-----ccHhHHHHHHHHHHH
Confidence 46889999999996321 1111112222 234778888999999999999965322 345677778877777
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEe
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLN 222 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~ 222 (312)
+.. +.. ...++..++..+++.++....+ .+.+++..++++..
T Consensus 331 ~i~-g~~------~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~ 373 (461)
T PRK05249 331 HAV-GEA------TAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEV 373 (461)
T ss_pred HHc-CCC------cccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEE
Confidence 652 321 1234444555555554433332 34456666666543
No 58
>PLN02507 glutathione reductase
Probab=99.59 E-value=9.8e-15 Score=137.24 Aligned_cols=142 Identities=20% Similarity=0.373 Sum_probs=110.0
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+|||+++ +++|+.+|+++++.+.+.|++.||++++++.+++++...++ +.+.+.++
T Consensus 213 ~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~-~~v~~~~g------- 284 (499)
T PLN02507 213 YIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG-IKVITDHG------- 284 (499)
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe-EEEEECCC-------
Confidence 4899999999999999999999 58899999999999999999999999999999999754332 44554433
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
.++++|.||++.|+.. +.+.....+.+. ..+.+|++++|+.|+|||+||++... .+.+.+..+++.+..
T Consensus 285 -~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~-----~l~~~A~~qg~~aa~ 358 (499)
T PLN02507 285 -EEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRI-----NLTPVALMEGTCFAK 358 (499)
T ss_pred -cEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCC-----ccHHHHHHHHHHHHH
Confidence 4689999999999522 112222122222 34788888999999999999965432 356777888888877
Q ss_pred HH
Q psy11185 174 AV 175 (312)
Q Consensus 174 ~~ 175 (312)
+.
T Consensus 359 ni 360 (499)
T PLN02507 359 TV 360 (499)
T ss_pred HH
Confidence 75
No 59
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.58 E-value=3.9e-15 Score=139.23 Aligned_cols=187 Identities=14% Similarity=0.162 Sum_probs=126.9
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+|||+++ +++|+.+|+++++.+.+.|+++ |++++++.+++++..++ .+.+.+.++.. .
T Consensus 184 ~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~-~~~v~~~~~~~----~ 257 (471)
T PRK06467 184 IIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKED-GIYVTMEGKKA----P 257 (471)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCC-EEEEEEEeCCC----c
Confidence 4799999999999999999999 5899999999999999999988 99999999999876433 34555544311 0
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
..++++|.||++.|+.. +.+.....+.+. ..+.+|.+++|+.|+|||+||++... ...+.+..++..+..
T Consensus 258 ~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~-----~la~~A~~eG~~aa~ 332 (471)
T PRK06467 258 AEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQP-----MLAHKGVHEGHVAAE 332 (471)
T ss_pred ceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCc-----ccHHHHHHHHHHHHH
Confidence 14689999999999632 112211122222 34788888999999999999965322 356677778887777
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEece
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNAL 224 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~~ 224 (312)
+. ++.. ..+++...+..++..++.... ..+.+++..|+++....
T Consensus 333 ~i-~g~~------~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~~~~~ 377 (471)
T PRK06467 333 VI-AGKK------HYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETAT 377 (471)
T ss_pred HH-cCCC------CCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCeEEEE
Confidence 65 2311 123333344444444443322 23445666677765443
No 60
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.57 E-value=6.5e-15 Score=137.64 Aligned_cols=182 Identities=18% Similarity=0.156 Sum_probs=125.3
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|++||++++ +++|+.+++++.+.+.+.|+++||++++++.+.+++...+ .+.+.+.++
T Consensus 187 ~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~~~v~~~~g------- 258 (466)
T PRK07845 187 VTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGD-GVVVTLTDG------- 258 (466)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCC-EEEEEECCC-------
Confidence 4899999999999999999999 5899999999999999999999999999999999975433 345555444
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
.++++|.||++.|... +.+.......+. ..+.+|+.++|+.|+|||+||++... .+.+.+..++.....
T Consensus 259 -~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~-----~l~~~A~~~g~~aa~ 332 (466)
T PRK07845 259 -RTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCTGVL-----PLASVAAMQGRIAMY 332 (466)
T ss_pred -cEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeeccCCc-----cchhHHHHHHHHHHH
Confidence 4689999999999522 112222122222 34778888999999999999965432 456677777777766
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEE
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYL 221 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~ 221 (312)
+. ++... ...++..++..+|+.++....+ .+.+++..++++.
T Consensus 333 ~i-~g~~~-----~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~ 375 (466)
T PRK07845 333 HA-LGEAV-----SPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPAR 375 (466)
T ss_pred HH-cCCCC-----CcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceE
Confidence 54 23110 1223444555555544433332 2344555565553
No 61
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.57 E-value=1.8e-14 Score=134.90 Aligned_cols=146 Identities=29% Similarity=0.470 Sum_probs=110.7
Q ss_pred hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT 99 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (312)
.+|+|+|.+|+++|.+|||++++++|+.+|+++++.+++.|+++||++++++.+.+++... +.+.+.+.++.. .
T Consensus 190 ~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~~v~~~~~~~-----~ 263 (484)
T TIGR01438 190 YVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE-AKVKVTFTDSTN-----G 263 (484)
T ss_pred HHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeEEEEEecCCc-----c
Confidence 5899999999999999999999888999999999999999999999999999998887643 334566654421 1
Q ss_pred ccccccEEEEecCcch----HHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 100 HKYDYDLLVLGGGSGG----LAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 100 ~~~~~d~vivg~G~~g----l~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
.++++|.||++.|+.. +.+.....+.+ ...+.+|+.++|+.|+|||+||++...+ ...+.+..+++.+..
T Consensus 264 ~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~----~l~~~A~~~g~~aa~ 339 (484)
T TIGR01438 264 IEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQ----ELTPVAIQAGRLLAQ 339 (484)
T ss_pred eEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCCc----cchHHHHHHHHHHHH
Confidence 3689999999999632 11222122222 2357788889999999999999764332 345667778888777
Q ss_pred HH
Q psy11185 174 AV 175 (312)
Q Consensus 174 ~~ 175 (312)
+.
T Consensus 340 ~i 341 (484)
T TIGR01438 340 RL 341 (484)
T ss_pred HH
Confidence 65
No 62
>PRK14727 putative mercuric reductase; Provisional
Probab=99.57 E-value=7.9e-15 Score=137.56 Aligned_cols=183 Identities=13% Similarity=0.129 Sum_probs=125.4
Q ss_pred hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT 99 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (312)
.+|+|+|..|+++|.+|||++++++|+.+|+++.+.+.+.|++.||++++++.+++++..++. +.+...+
T Consensus 198 ~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~-~~v~~~~--------- 267 (479)
T PRK14727 198 VVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNG-FVLTTGH--------- 267 (479)
T ss_pred HHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCE-EEEEEcC---------
Confidence 589999999999999999999988889999999999999999999999999999998754332 3333322
Q ss_pred ccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185 100 HKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA 174 (312)
Q Consensus 100 ~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~ 174 (312)
.++++|.+|++.|+.. +.+.....+.+. ..+.+|+.++|+.|+|||+||++... ...+.+..+++.+..+
T Consensus 268 g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~-----~~~~~A~~~G~~aa~~ 342 (479)
T PRK14727 268 GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLP-----QFVYVAAAAGSRAGIN 342 (479)
T ss_pred CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCCcc-----hhhhHHHHHHHHHHHH
Confidence 3578999999999632 222221122222 34788888999999999999965332 3445666777777776
Q ss_pred HHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEece
Q psy11185 175 VAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNAL 224 (312)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~~ 224 (312)
. ++.. ..+++...+..++..++....+ .+.+++..|+++....
T Consensus 343 i-~g~~------~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~ 386 (479)
T PRK14727 343 M-TGGN------ATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRV 386 (479)
T ss_pred H-cCCC------cccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEE
Confidence 5 3321 1233333444445555433332 3445666677765443
No 63
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.56 E-value=3.5e-15 Score=133.21 Aligned_cols=195 Identities=18% Similarity=0.152 Sum_probs=95.1
Q ss_pred cccEEEEecCcchHHHHHHHHHCC-CcEEEEeccCCCCCCccc----------ccCCcccccccc-hhhHHHHHHHHHHH
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIPSPQGTTW----------GLGGTCVNVGCI-PKKLMHQAALLGEA 170 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~~~~~~~v~----------a~Gd~~~~~~~~-~~~~~~~a~~~~~~ 170 (312)
.+|+|.||.||++|++|..+.+.+ .+...+|+....++..=+ ..-|.++..+.. +.....+....++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 379999999999999999987766 678999976655544322 223333222211 11122222222222
Q ss_pred HHHHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC--CeEEEEe--cCCCeEEEE
Q psy11185 171 IKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ--HSVEATM--KNGEKKTLT 246 (312)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~--~~~~v~~--~~G~~~~i~ 246 (312)
......+ ...+...++..|+.+..+.+... + ..+-++..-... .+. ..+.|.+ .+|+..++.
T Consensus 82 -~~f~~~~-------~~~p~R~ef~dYl~Wva~~~~~~----v-~~~~~V~~I~~~-~~~~~~~~~V~~~~~~g~~~~~~ 147 (341)
T PF13434_consen 82 -YEFYNRG-------YFFPSRREFNDYLRWVAEQLDNQ----V-RYGSEVTSIEPD-DDGDEDLFRVTTRDSDGDGETYR 147 (341)
T ss_dssp -HHHHHH---------SS-BHHHHHHHHHHHHCCGTTT----E-EESEEEEEEEEE-EETTEEEEEEEEEETTS-EEEEE
T ss_pred -hhhhhcC-------CCCCCHHHHHHHHHHHHHhCCCc----e-EECCEEEEEEEe-cCCCccEEEEEEeecCCCeeEEE
Confidence 1211111 23455566666655554433200 0 011111111110 111 2344444 567678999
Q ss_pred cCeEEEccCCCCCCCCCCCC---CcceeccccccCC---CCCCCeEEEEcCchhhHHHHHHhhcCce--eeee
Q psy11185 247 AENILIATGGRPNYPDIPGA---KEHCISSDDIFSL---EKPPGKTLVVGAGYIGKLETWDSNSGCG--NVTI 311 (312)
Q Consensus 247 ad~vVlAtG~~p~~p~~~g~---~~~~~~~~~~~~~---~~~~~~v~VvG~G~sa~~~a~~l~~~~~--~V~~ 311 (312)
|+.||+|||..|.+|++... ...+.|+.++... ...+++|+|||||+||.|++..|..... +|++
T Consensus 148 ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~ 220 (341)
T PF13434_consen 148 ARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTW 220 (341)
T ss_dssp ESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEE
T ss_pred eCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEE
Confidence 99999999999999876543 2456777766544 3456689999999999999999777653 5554
No 64
>PRK07846 mycothione reductase; Reviewed
Probab=99.54 E-value=1.2e-14 Score=135.25 Aligned_cols=184 Identities=17% Similarity=0.140 Sum_probs=123.2
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|.+|+++|.+|||+++ +++|+.+++++++.+.+.+ +.+|++++++.+++++..+ +.+.+.+.++
T Consensus 176 ~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~-~~v~v~~~~g------- 246 (451)
T PRK07846 176 FIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDG-SGVTLRLDDG------- 246 (451)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC-CEEEEEECCC-------
Confidence 5899999999999999999999 5889999999998887655 5689999999999997543 3345555443
Q ss_pred CccccccEEEEecCcc----hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSG----GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~----gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
..+++|.||++.|+. .+.+.....+.+. ..+.+|++++|+.|+|||+||++... .+.+.+..+++.+..
T Consensus 247 -~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~-----~l~~~A~~~g~~~a~ 320 (451)
T PRK07846 247 -STVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPY-----QLKHVANHEARVVQH 320 (451)
T ss_pred -cEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCc-----cChhHHHHHHHHHHH
Confidence 468999999999952 2211211122222 34788888999999999999965332 355677788888877
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEec
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNA 223 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~ 223 (312)
+.. +... ....++..++..+|+.++.... ..+.+++..|+++...
T Consensus 321 ni~-~~~~----~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~~~~ 366 (451)
T PRK07846 321 NLL-HPDD----LIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDITVK 366 (451)
T ss_pred HHc-CCCC----ccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCEEEE
Confidence 662 2100 1122333344444444443332 2344555667665443
No 65
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.53 E-value=2e-14 Score=134.26 Aligned_cols=183 Identities=16% Similarity=0.189 Sum_probs=123.4
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+|||+++ +++++.+++++++.+.+.|++.||++++++++++++... . .+.+..+..
T Consensus 180 ~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~--~v~~~~~g~----- 251 (458)
T PRK06912 180 VIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYK-K--QALFEYEGS----- 251 (458)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-C--EEEEEECCc-----
Confidence 4899999999999999999999 589999999999999999999999999999999987532 2 233332211
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA 174 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~ 174 (312)
..++++|.+|++.|... +.+.......+.+.+.+|++++|+.|+||++||++.. ..+.+.+..++.....+
T Consensus 252 ~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~~~~-----~~la~~A~~~g~~aa~~ 326 (458)
T PRK06912 252 IQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDVIGG-----IQLAHVAFHEGTTAALH 326 (458)
T ss_pred eEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeecCCC-----cccHHHHHHHHHHHHHH
Confidence 13588999999999522 2112111122223477888899999999999996532 24566777788877776
Q ss_pred HHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEe
Q psy11185 175 VAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLN 222 (312)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~ 222 (312)
. .+.. ..+++..++..+++.++.... ..+.+++..++++..
T Consensus 327 ~-~g~~------~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~ 368 (458)
T PRK06912 327 A-SGED------VKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRI 368 (458)
T ss_pred H-cCCC------CCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEE
Confidence 5 3311 122333344444544443333 234455555665543
No 66
>PRK14694 putative mercuric reductase; Provisional
Probab=99.53 E-value=2.1e-14 Score=134.44 Aligned_cols=182 Identities=16% Similarity=0.134 Sum_probs=123.5
Q ss_pred hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT 99 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (312)
.+|+|+|..|+++|.+||+++++++|+.+++++.+.+.+.|++.||++++++.+.+++.++ +.+.+.. ++
T Consensus 188 ~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~-~~~~v~~-~~-------- 257 (468)
T PRK14694 188 VVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNG-REFILET-NA-------- 257 (468)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEEEEEE-CC--------
Confidence 4899999999999999999998888999999999999999999999999999999987543 3223332 22
Q ss_pred ccccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185 100 HKYDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV 175 (312)
Q Consensus 100 ~~~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~ 175 (312)
.++++|.||++.|... +.+.....+.....+.+|++++|+.|+|||+||++... ...+.+..++.....+.
T Consensus 258 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~-----~~~~~A~~~G~~aa~~i 332 (468)
T PRK14694 258 GTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAGDCTDQP-----QFVYVAAAGGSRAAINM 332 (468)
T ss_pred CEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEEEEeecCCCc-----ccHHHHHHHHHHHHHHh
Confidence 3589999999999521 11111112223345788888999999999999965432 24455666777776665
Q ss_pred HcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEec
Q psy11185 176 AYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNA 223 (312)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~ 223 (312)
++. ...+++..++..++..++....+ .+.+++..++++...
T Consensus 333 -~~~------~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~ 374 (468)
T PRK14694 333 -TGG------DASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDTDSR 374 (468)
T ss_pred -cCC------CcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCceEEE
Confidence 221 12233444444455555433332 344556666665443
No 67
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.53 E-value=2.4e-14 Score=134.26 Aligned_cols=188 Identities=17% Similarity=0.186 Sum_probs=128.7
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+|||+++ +++++.+++++.+.+.+.|+++||++++++.+++++.+.+ .+.+.+.+++. +
T Consensus 193 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~-~v~v~~~~~~g-~--- 267 (475)
T PRK06327 193 VIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGK-GVSVAYTDADG-E--- 267 (475)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCC-EEEEEEEeCCC-c---
Confidence 3799999999999999999999 5889999999999999999999999999999999986433 34555554311 1
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
...+++|.+|++.|... +.+.....+.+ ...+.+|+.++|+.|+||++||++... ...+.+..++..+..
T Consensus 268 ~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~-----~~~~~A~~~G~~aa~ 342 (475)
T PRK06327 268 AQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGP-----MLAHKAEEEGVAVAE 342 (475)
T ss_pred eeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCc-----chHHHHHHHHHHHHH
Confidence 13689999999999532 22222112222 235778888899999999999965432 356677777777777
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEece
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNAL 224 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~~ 224 (312)
+. .+.. ..+++..++..+++.++.... ..+.+++..|+++....
T Consensus 343 ~i-~g~~------~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~~~~~ 387 (475)
T PRK06327 343 RI-AGQK------GHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGK 387 (475)
T ss_pred HH-cCCC------CCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCEEEEE
Confidence 65 2311 112333444444544443322 24455666787765554
No 68
>PRK06370 mercuric reductase; Validated
Probab=99.53 E-value=2.1e-14 Score=134.31 Aligned_cols=188 Identities=15% Similarity=0.084 Sum_probs=125.9
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|++|||+++ +++++.+++++.+.+.+.|++.||++++++.+.+++..+++ +.+.+.....
T Consensus 181 ~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~-~~v~~~~~~~----- 254 (463)
T PRK06370 181 YIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDG-IAVGLDCNGG----- 254 (463)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE-EEEEEEeCCC-----
Confidence 4799999999999999999999 58999999999999999999999999999999999764333 3444432111
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
..++++|.||++.|... +.+.....+.+. ..+.+|+.++|+.|+|||+||++.. ....+.+..++..+..
T Consensus 255 ~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~-----~~~~~~A~~~g~~aa~ 329 (463)
T PRK06370 255 APEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGR-----GAFTHTAYNDARIVAA 329 (463)
T ss_pred ceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCC-----cccHHHHHHHHHHHHH
Confidence 14689999999999522 222221122222 3478888899999999999996533 2355677778888877
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEece
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNAL 224 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~~ 224 (312)
+.. +.. ...+++..++..++..++....+ .+.++++.|+++....
T Consensus 330 ni~-~~~-----~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~~~~~ 375 (463)
T PRK06370 330 NLL-DGG-----RRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGT 375 (463)
T ss_pred HHh-CCC-----CCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCeEEEE
Confidence 762 210 11233333444444444433332 3345556676654443
No 69
>PRK06116 glutathione reductase; Validated
Probab=99.53 E-value=6.7e-14 Score=130.51 Aligned_cols=181 Identities=24% Similarity=0.362 Sum_probs=126.1
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+||++++ +++++.+++++.+.+.+.|++.||++++++++.+++.++++.+.+.+.++
T Consensus 177 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g------- 249 (450)
T PRK06116 177 YIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDG------- 249 (450)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCC-------
Confidence 5899999999999999999999 58899999999999999999999999999999999865444345555544
Q ss_pred CccccccEEEEecCcc----hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSG----GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~----gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
.++++|.||++.|.. .+.+.....+.+. ..+.+|.+++|+.|+||++||++... ...+.+..++..+..
T Consensus 250 -~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa~ 323 (450)
T PRK06116 250 -ETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRV-----ELTPVAIAAGRRLSE 323 (450)
T ss_pred -cEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCc-----CcHHHHHHHHHHHHH
Confidence 468999999999952 2222221122222 34778888999999999999965322 355677888888877
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCc
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKV 218 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV 218 (312)
+. ++... +..+++..++..+|+.++....+ .+.+++..+.
T Consensus 324 ~i-~g~~~----~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~ 364 (450)
T PRK06116 324 RL-FNNKP----DEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYG 364 (450)
T ss_pred HH-hCCCC----CCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCC
Confidence 65 23110 12344555566666655433332 2333444443
No 70
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.53 E-value=6.1e-14 Score=130.49 Aligned_cols=142 Identities=23% Similarity=0.341 Sum_probs=109.4
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+||++++ +++|+.+++++++.+.+.|++.||++++++.+.+++...++ +.+.+.++
T Consensus 176 ~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~g------- 247 (446)
T TIGR01424 176 YIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDG-LKVTLSHG------- 247 (446)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-EEEEEcCC-------
Confidence 6899999999999999999999 58899999999999999999999999999999999764333 45555443
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
.++++|.+|++.|... +.+.....+.+. ..+.+|++++|+.|+|||+||++.. ....+.+..+++.+..
T Consensus 248 -~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~-----~~l~~~A~~~g~~~a~ 321 (446)
T TIGR01424 248 -EEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDR-----INLTPVAIMEATCFAN 321 (446)
T ss_pred -cEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCC-----ccchhHHHHHHHHHHH
Confidence 4689999999999632 212211122222 3478888899999999999996532 2456677778887777
Q ss_pred HH
Q psy11185 174 AV 175 (312)
Q Consensus 174 ~~ 175 (312)
+.
T Consensus 322 ~i 323 (446)
T TIGR01424 322 TE 323 (446)
T ss_pred HH
Confidence 65
No 71
>PRK13748 putative mercuric reductase; Provisional
Probab=99.53 E-value=2.1e-14 Score=137.59 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=122.1
Q ss_pred hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT 99 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (312)
.+|+|+|.+|+++|.+|||++++++|+.+|+++++.+.+.|++.||++++++.+++++..+ +.+.+...+
T Consensus 280 ~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-~~~~v~~~~--------- 349 (561)
T PRK13748 280 VVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD-GEFVLTTGH--------- 349 (561)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEecC---------
Confidence 5899999999999999999999878888999999999999999999999999999987543 323333221
Q ss_pred ccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185 100 HKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA 174 (312)
Q Consensus 100 ~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~ 174 (312)
.++++|.||++.|... +.+.....+.+. ..+.+|++++|+.|+|||+||++... ...+.+..++..+..+
T Consensus 350 ~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~-----~~~~~A~~~g~~aa~~ 424 (561)
T PRK13748 350 GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQP-----QFVYVAAAAGTRAAIN 424 (561)
T ss_pred CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCc-----cchhHHHHHHHHHHHH
Confidence 3589999999999532 212221122222 34788889999999999999965432 3445566677777776
Q ss_pred HHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEe
Q psy11185 175 VAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLN 222 (312)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~ 222 (312)
. ++.. ..+++...+..++..++....+ .+.+++..|+++..
T Consensus 425 i-~g~~------~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~ 466 (561)
T PRK13748 425 M-TGGD------AALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDS 466 (561)
T ss_pred H-cCCC------cccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCeEE
Confidence 5 2321 1223333333444444433332 33455556665543
No 72
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.53 E-value=2.3e-14 Score=133.24 Aligned_cols=141 Identities=17% Similarity=0.272 Sum_probs=104.8
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++.+.+++.++ +.+.+...+
T Consensus 168 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~v~v~~~~-------- 238 (441)
T PRK08010 168 YIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHE-NQVQVHSEH-------- 238 (441)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEEEEEEcC--------
Confidence 4799999999999999999999 588999999999999999999999999999999997643 323333221
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
.++++|.+|++.|... +.+.....+.+. ..+.+|++++|+.|+|||+||++... ...+.+..+++.+..
T Consensus 239 -g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~-----~~~~~a~~~~~~~~~ 312 (441)
T PRK08010 239 -AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGL-----QFTYISLDDYRIVRD 312 (441)
T ss_pred -CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCc-----cchhHHHHHHHHHHH
Confidence 3478999999999522 222221122222 34788888999999999999965432 345556666666665
Q ss_pred HH
Q psy11185 174 AV 175 (312)
Q Consensus 174 ~~ 175 (312)
+.
T Consensus 313 ~~ 314 (441)
T PRK08010 313 EL 314 (441)
T ss_pred HH
Confidence 54
No 73
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.52 E-value=8.3e-14 Score=130.37 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=126.2
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe--ecccccc
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK--NVAEVRQ 96 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~--~~~~~~~ 96 (312)
.+|+|+|..|+++|.+|||+++ +++|+.+|+++++.+.+.|+++||++++++.+++++..+ +.+.+.+. +++
T Consensus 182 ~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~~v~~~~~~g~---- 256 (466)
T PRK07818 182 AIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNG-SKVTVTVSKKDGK---- 256 (466)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CeEEEEEEecCCC----
Confidence 3799999999999999999999 599999999999999999999999999999999997643 33445554 221
Q ss_pred CCCccccccEEEEecCcchH----HHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHH
Q psy11185 97 DNTHKYDYDLLVLGGGSGGL----AAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAI 171 (312)
Q Consensus 97 ~~~~~~~~d~vivg~G~~gl----~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~ 171 (312)
..++++|.||++.|+... .+.......+. ..+.+|..++|+.|+||++||++.. ..+.+.+..++...
T Consensus 257 --~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~-----~~l~~~A~~~g~~a 329 (466)
T PRK07818 257 --AQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAK-----LQLAHVAEAQGVVA 329 (466)
T ss_pred --eEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCC-----cccHhHHHHHHHHH
Confidence 136899999999996321 12221122222 3477888899999999999996532 24667777888888
Q ss_pred HHHHHcCCccCCcccccc-CHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEe
Q psy11185 172 KDAVAYGWEIPNVKSVQH-NWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLN 222 (312)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~ 222 (312)
..+. ++... ..+ ++..++..+++.++.... ..+.+++..|+++..
T Consensus 330 a~~i-~g~~~-----~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~ 376 (466)
T PRK07818 330 AETI-AGAET-----LELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKV 376 (466)
T ss_pred HHHH-cCCCC-----CccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEE
Confidence 7766 23210 112 344444444544443332 234455555666543
No 74
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.52 E-value=8.2e-14 Score=128.77 Aligned_cols=143 Identities=23% Similarity=0.211 Sum_probs=104.0
Q ss_pred hhhhhhhHhhhcc--------------CCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee
Q psy11185 20 DSGLECAGFLNGL--------------GFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL 84 (312)
Q Consensus 20 ~ig~E~A~~l~~~--------------g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~ 84 (312)
.+|+|+|..|+.+ +.+|||+++ +++|+.+++++++.+++.|+++||++++++.++++..+
T Consensus 183 ~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----- 257 (424)
T PTZ00318 183 PTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----- 257 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC-----
Confidence 5899999998863 789999999 58999999999999999999999999999999988632
Q ss_pred EEEEeeccccccCCCccccccEEEEecCcchHHHHHHH-HHCC-CcEEEEeccCC-CCCCcccccCCcccccccchhhHH
Q psy11185 85 KVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEA-AAHG-RKVIVLDYVIP-SPQGTTWGLGGTCVNVGCIPKKLM 161 (312)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~-~~~~-~~~~~ve~~~~-~~~~~v~a~Gd~~~~~~~~~~~~~ 161 (312)
.+.+.++ +++++|++||+.|.....+...+ ...+ ...+.+|+.++ ++.|+|||+|||+...+....+..
T Consensus 258 ~v~~~~g--------~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~ 329 (424)
T PTZ00318 258 EVVLKDG--------EVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLA 329 (424)
T ss_pred EEEECCC--------CEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCch
Confidence 4667665 57899999999995332222222 1112 23466777776 689999999997654322122344
Q ss_pred HHHHHHHHHHHHHH
Q psy11185 162 HQAALLGEAIKDAV 175 (312)
Q Consensus 162 ~~a~~~~~~~~~~~ 175 (312)
..+..++..+..+.
T Consensus 330 ~~A~~qg~~~A~ni 343 (424)
T PTZ00318 330 QVASQQGVYLAKEF 343 (424)
T ss_pred HHHHHHHHHHHHHH
Confidence 55566666655543
No 75
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.50 E-value=2.2e-13 Score=127.44 Aligned_cols=145 Identities=18% Similarity=0.234 Sum_probs=109.7
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+||++++ +++|+.+++++.+.+.+.|++.||++++++++++++.+++ .+.+.+.++..
T Consensus 182 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v~v~~~~gg~----- 255 (462)
T PRK06416 182 YIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDD-GVTVTLEDGGK----- 255 (462)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EEEEEEEeCCe-----
Confidence 4899999999999999999999 6899999999999999999999999999999999986433 34555544311
Q ss_pred CccccccEEEEecCcchH-H---HHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGGL-A---AAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA 174 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~gl-~---~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~ 174 (312)
...+++|.+|++.|.... . +.......+...+.+|.+++|+.|+||++||++.. ....+.+..++..+..+
T Consensus 256 ~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiGD~~~~-----~~~~~~A~~~g~~aa~n 330 (462)
T PRK06416 256 EETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIGDIVGG-----PMLAHKASAEGIIAAEA 330 (462)
T ss_pred eEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEeeecCCC-----cchHHHHHHHHHHHHHH
Confidence 145789999999995321 1 11111222333477888889999999999996542 23566777788877776
Q ss_pred H
Q psy11185 175 V 175 (312)
Q Consensus 175 ~ 175 (312)
.
T Consensus 331 i 331 (462)
T PRK06416 331 I 331 (462)
T ss_pred H
Confidence 5
No 76
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.50 E-value=1.7e-13 Score=127.27 Aligned_cols=143 Identities=14% Similarity=0.143 Sum_probs=105.7
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+|||+++ +++++.+++++.+.+.+.|++.||++++++++++++. . .+.+.++
T Consensus 158 ~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~--~v~~~~g------- 225 (438)
T PRK13512 158 YISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING---N--EVTFKSG------- 225 (438)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC---C--EEEECCC-------
Confidence 5899999999999999999999 5889999999999999999999999999999999863 2 4556554
Q ss_pred CccccccEEEEecCcch-HHHHHHH-HHCCC-cEEEEeccCCCCCCcccccCCcccccc----cc-hhhHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG-LAAAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVG----CI-PKKLMHQAALLGEA 170 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~----~~-~~~~~~~a~~~~~~ 170 (312)
..+++|.+|++.|+.. ....... ...+. ..+.+|+.++|+.|+|||+||++.... .. .....+.+..++..
T Consensus 226 -~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~ 304 (438)
T PRK13512 226 -KVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASI 304 (438)
T ss_pred -CEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHH
Confidence 4578999999999632 2222111 22222 346778888999999999999764321 10 12344556666666
Q ss_pred HHHHH
Q psy11185 171 IKDAV 175 (312)
Q Consensus 171 ~~~~~ 175 (312)
+..+.
T Consensus 305 ~a~ni 309 (438)
T PRK13512 305 VAEQI 309 (438)
T ss_pred HHHHh
Confidence 66654
No 77
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.50 E-value=5.5e-14 Score=131.79 Aligned_cols=188 Identities=18% Similarity=0.195 Sum_probs=122.1
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEc-CCCeeEEEEeeccccccC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL-ADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~ 97 (312)
.+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++.+.+++.. .++...+...+++.
T Consensus 190 ~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~---- 265 (472)
T PRK05976 190 VIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEE---- 265 (472)
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCce----
Confidence 4799999999999999999999 58999999999999999999999999999999998742 22212222333321
Q ss_pred CCccccccEEEEecCcch----HHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 98 NTHKYDYDLLVLGGGSGG----LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~~g----l~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
..+++|.+|++.|... +.+...........+.+++.++++.++||++||++... ...+.+..++.....
T Consensus 266 --~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~-----~~~~~A~~~g~~aa~ 338 (472)
T PRK05976 266 --KTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEP-----QLAHVAMAEGEMAAE 338 (472)
T ss_pred --EEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCc-----ccHHHHHHHHHHHHH
Confidence 3689999999999632 21111111122345778888899999999999965321 345566777777666
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHHHhhH-HHHHHHhcCCceEEece
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW-VTRVMLRDKKVDYLNAL 224 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~~~~~~ 224 (312)
+. .+.. ...+++...+..++..++.... ..+.+++..|+++....
T Consensus 339 ~i-~g~~-----~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~ 384 (472)
T PRK05976 339 HI-AGKK-----PRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGK 384 (472)
T ss_pred HH-cCCC-----CCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEE
Confidence 54 2311 1122222233333333332222 24455666677765443
No 78
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.49 E-value=3.5e-13 Score=123.62 Aligned_cols=144 Identities=16% Similarity=0.127 Sum_probs=107.2
Q ss_pred hhhhhhHhhhccCCeEEEEEc-cCCCcc-chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 21 SGLECAGFLNGLGFNATVMIR-SVPLRG-FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~-~~~l~~-~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
+|+|+|..|+++|.+|||+++ +++|+. +++.+.+++.+.+++.||++++++.+++++. ++.+.+.+.++
T Consensus 155 ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~~v~l~~g------- 225 (396)
T PRK09754 155 IGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKVELTLQSG------- 225 (396)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEEEEEECCC-------
Confidence 799999999999999999999 577764 6889999999999999999999999999874 33345566555
Q ss_pred CccccccEEEEecCcch-HHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccc----hhhHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG-LAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI----PKKLMHQAALLGEAIK 172 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~----~~~~~~~a~~~~~~~~ 172 (312)
..+++|.||++.|... ..++..+ ...+ +.+++|.+++|+.|+|||+||++...... .....+.+..+++.+.
T Consensus 226 -~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa 303 (396)
T PRK09754 226 -ETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAA 303 (396)
T ss_pred -CEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHH
Confidence 5689999999999633 2222211 1122 34788988999999999999977543211 1123456777788777
Q ss_pred HHH
Q psy11185 173 DAV 175 (312)
Q Consensus 173 ~~~ 175 (312)
.+.
T Consensus 304 ~ni 306 (396)
T PRK09754 304 AAM 306 (396)
T ss_pred HHh
Confidence 766
No 79
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.48 E-value=2.1e-13 Score=127.67 Aligned_cols=187 Identities=16% Similarity=0.154 Sum_probs=125.8
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|++|||+++ +++|+.+|+++.+.+.+.|++.||++++++++++++.+++ ...+.+...+.
T Consensus 176 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~~~v~~~~~~~----- 249 (463)
T TIGR02053 176 AIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGG-GKIITVEKPGG----- 249 (463)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCC-EEEEEEEeCCC-----
Confidence 4799999999999999999999 5899999999999999999999999999999999976433 23444432111
Q ss_pred CccccccEEEEecCcc----hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSG----GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~----gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
..++++|.||++.|.. ++.+.....+.+. ..+.+|..++|+.|+|||+||++.. ....+.+..++..+..
T Consensus 250 ~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~-----~~~~~~A~~~g~~aa~ 324 (463)
T TIGR02053 250 QGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGG-----LQLEYVAAKEGVVAAE 324 (463)
T ss_pred ceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCC-----cccHhHHHHHHHHHHH
Confidence 1468999999999952 2222221122222 3477888899999999999996543 2356677788887777
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhcCCceEEec
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRDKKVDYLNA 223 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gV~~~~~ 223 (312)
+. ++.. ...+++..++..++..++....+ .+.+++..|+++...
T Consensus 325 ni-~~~~-----~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~ 369 (463)
T TIGR02053 325 NA-LGGA-----NAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCR 369 (463)
T ss_pred Hh-cCCC-----CCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCeEEE
Confidence 65 2310 11223333344444444433332 334555666665443
No 80
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.48 E-value=2.3e-13 Score=128.05 Aligned_cols=175 Identities=25% Similarity=0.349 Sum_probs=121.2
Q ss_pred hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT 99 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (312)
.+|+|+|..|+++|.+|||++++++|+.+|+++++.+.+.|++.||++++++.+.+++...+ .+.+.+.++
T Consensus 192 ~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~-~~~v~~~~g-------- 262 (499)
T PTZ00052 192 YIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDD-KIKVLFSDG-------- 262 (499)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCC-eEEEEECCC--------
Confidence 48999999999999999999988888999999999999999999999999999998876433 245555544
Q ss_pred ccccccEEEEecCcch----HHHHHHHHHCCC--cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 100 HKYDYDLLVLGGGSGG----LAAAKEAAAHGR--KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 100 ~~~~~d~vivg~G~~g----l~~a~~~~~~~~--~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
..+++|.||++.|+.. +.+.....+.+. .+++++. +|+.|+|||+||++...+ ...+.+..++..+..
T Consensus 263 ~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGDv~~~~~----~l~~~A~~~g~~aa~ 336 (499)
T PTZ00052 263 TTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGDVVEGRP----ELTPVAIKAGILLAR 336 (499)
T ss_pred CEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEEecCCCc----ccHHHHHHHHHHHHH
Confidence 4578999999999632 222211122222 2344444 899999999999664332 355677778887777
Q ss_pred HHHcCCccCCccccccCHHHHHHHHHHHHHHhhHH-HHHHHhc
Q psy11185 174 AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWV-TRVMLRD 215 (312)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 215 (312)
+.. +.. ...+++..++..+|+.++....+ .+.+++.
T Consensus 337 ni~-g~~-----~~~~~~~~~p~~ift~p~ia~vGlte~~A~~ 373 (499)
T PTZ00052 337 RLF-KQS-----NEFIDYTFIPTTIFTPIEYGACGYSSEAAIA 373 (499)
T ss_pred HHh-CCC-----CCcCccccCCeEEecCCcceeecCCHHHHHH
Confidence 652 211 12345555666666666544433 3334443
No 81
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.48 E-value=5e-13 Score=121.83 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=105.8
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCcc-chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRG-FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~-~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
.+|+|+|..|.+.|.+||++++ +++++. +++++.+.+.+.|++.||++++++.+.++..+. +...+.+.++
T Consensus 151 ~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~-~~~~v~~~~g------ 223 (377)
T PRK04965 151 LIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTD-SGIRATLDSG------ 223 (377)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccC-CEEEEEEcCC------
Confidence 4899999999999999999999 577765 588999999999999999999999999987543 3345666554
Q ss_pred CCccccccEEEEecCcc-hHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185 98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV 175 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~ 175 (312)
..+++|.+|++.|.. ...++..+ ...+ +.+++|+.++|+.|+|||+||++...+... .....+..++..+..+.
T Consensus 224 --~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~gi~vd~~l~ts~~~VyA~GD~a~~~~~~~-~~~~~a~~~g~~~a~n~ 299 (377)
T PRK04965 224 --RSIEVDAVIAAAGLRPNTALARRAGLAVN-RGIVVDSYLQTSAPDIYALGDCAEINGQVL-PFLQPIQLSAMALAKNL 299 (377)
T ss_pred --cEEECCEEEECcCCCcchHHHHHCCCCcC-CCEEECCCcccCCCCEEEeeecEeECCcee-ehHHHHHHHHHHHHHHh
Confidence 578999999999953 23333221 1222 247788889999999999999765543211 12233455666665554
No 82
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.47 E-value=4.1e-13 Score=132.73 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=110.2
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCC-CeeEEEEeecccccc
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD-GKLKVQYKNVAEVRQ 96 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~-~~~~v~~~~~~~~~~ 96 (312)
.+|+|+|..|+++|.+|||+++ +++|+ .+|+++++.+.+.|+++||++++++.++++..+++ ....+.+.++
T Consensus 155 ~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG----- 229 (847)
T PRK14989 155 LLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG----- 229 (847)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC-----
Confidence 3899999999999999999999 57776 58999999999999999999999999999975332 2235666655
Q ss_pred CCCccccccEEEEecCcch-HHHHHHH-HHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 97 DNTHKYDYDLLVLGGGSGG-LAAAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 97 ~~~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
.++++|.||++.|... ..++... ...+. ..+++|..++|+.|+|||+||++...+.. ..+...+..++..+..
T Consensus 230 ---~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~-~gl~~~a~~~a~vaa~ 305 (847)
T PRK14989 230 ---SELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRV-FGLVAPGYKMAQVAVD 305 (847)
T ss_pred ---CEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcc-cccHHHHHHHHHHHHH
Confidence 5789999999999532 2232211 22222 35888999999999999999976554321 2344566677777766
Q ss_pred HH
Q psy11185 174 AV 175 (312)
Q Consensus 174 ~~ 175 (312)
+.
T Consensus 306 ~i 307 (847)
T PRK14989 306 HL 307 (847)
T ss_pred Hh
Confidence 54
No 83
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.47 E-value=4.7e-13 Score=128.54 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=108.3
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHH-hccceEEEeeceeeEEEEcCCC-eeEEEEeeccccc-
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEM-AEGGVHFLHKCLPLSVTKLADG-KLKVQYKNVAEVR- 95 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l-~~~gi~~~~~~~v~~~~~~~~~-~~~v~~~~~~~~~- 95 (312)
.||+|+|.+|+++|++|||+++ +++|+.+|+++++++.+.+ ++.||++++++.+.+++...++ .+.+.+.+..+..
T Consensus 322 ~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~ 401 (659)
T PTZ00153 322 IIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGES 401 (659)
T ss_pred HHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccc
Confidence 5899999999999999999999 6999999999999999986 6799999999999999864332 2444443211000
Q ss_pred ------cCCCccccccEEEEecCcc----hHHHHHHHHHCCCcEEEEeccCCCC------CCcccccCCcccccccchhh
Q psy11185 96 ------QDNTHKYDYDLLVLGGGSG----GLAAAKEAAAHGRKVIVLDYVIPSP------QGTTWGLGGTCVNVGCIPKK 159 (312)
Q Consensus 96 ------~~~~~~~~~d~vivg~G~~----gl~~a~~~~~~~~~~~~ve~~~~~~------~~~v~a~Gd~~~~~~~~~~~ 159 (312)
.....++++|.|||++|+. ++.+.....+.+...+.+|++++++ .|+|||+||++ .. ..
T Consensus 402 ~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~-g~----~~ 476 (659)
T PTZ00153 402 DGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDAN-GK----QM 476 (659)
T ss_pred cccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecC-CC----cc
Confidence 0001268999999999962 2222221122233457888888886 58999999964 32 24
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11185 160 LMHQAALLGEAIKDAV 175 (312)
Q Consensus 160 ~~~~a~~~~~~~~~~~ 175 (312)
+.+.+..++..+..+.
T Consensus 477 La~~A~~qg~~aa~ni 492 (659)
T PTZ00153 477 LAHTASHQALKVVDWI 492 (659)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6678888888887766
No 84
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.47 E-value=3.6e-13 Score=125.45 Aligned_cols=141 Identities=19% Similarity=0.209 Sum_probs=106.3
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+|||+++ +++++.+++++.+.+.+.+ +.+|++++++.+++++.++++ +.+.+.++
T Consensus 179 ~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~-v~v~~~~g------- 249 (452)
T TIGR03452 179 YIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDG-VTLTLDDG------- 249 (452)
T ss_pred HHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCe-EEEEEcCC-------
Confidence 5899999999999999999999 5888999999999888755 468999999999999764333 45555443
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
..+++|.+|++.|+.. +.+.....+.+. ..+.+|++++|+.|+|||+||++.. ..+.+.+..++..+..
T Consensus 250 -~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~-----~~l~~~A~~~g~~~a~ 323 (452)
T TIGR03452 250 -STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSP-----YQLKHVANAEARVVKH 323 (452)
T ss_pred -CEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCc-----ccChhHHHHHHHHHHH
Confidence 4689999999999632 222221222322 3478888899999999999996532 2456677788888877
Q ss_pred HH
Q psy11185 174 AV 175 (312)
Q Consensus 174 ~~ 175 (312)
+.
T Consensus 324 ni 325 (452)
T TIGR03452 324 NL 325 (452)
T ss_pred Hh
Confidence 65
No 85
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.46 E-value=7e-13 Score=121.60 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=71.0
Q ss_pred HhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCc-cee---ccccccCCC---CCCC
Q psy11185 213 LRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE-HCI---SSDDIFSLE---KPPG 284 (312)
Q Consensus 213 ~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~-~~~---~~~~~~~~~---~~~~ 284 (312)
+...+|++..++ +..++.....+.+.+| .++.||+||+|||+.|+.|++++... ..+ +..++..+. ..++
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~~v~~~~g--~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~ 145 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPER 145 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCC
Confidence 345689988764 5566665556666777 67999999999999998877765422 222 233433322 2467
Q ss_pred eEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 285 KTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 285 ~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+++|||+|.+|+|.|..|...+.+|||
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtl 172 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTV 172 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 899999999999999999988888886
No 86
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.45 E-value=5.3e-13 Score=124.88 Aligned_cols=144 Identities=22% Similarity=0.196 Sum_probs=107.4
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+||++++ +++++.+|+++.+.+.+.|+++ |++++++.+.+++..++..+.+...+++
T Consensus 179 ~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~------ 251 (460)
T PRK06292 179 VIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGK------ 251 (460)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCc------
Confidence 5899999999999999999999 5899999999999999999999 9999999999997643322333332331
Q ss_pred CccccccEEEEecCcc----hHHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSG----GLAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~----gl~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
..++++|.+|++.|.. .+.+.....+.+ ...+.+|++++|+.|+|||+||++... ...+.+..++..+..
T Consensus 252 ~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~-----~~~~~A~~qg~~aa~ 326 (460)
T PRK06292 252 TETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP-----PLLHEAADEGRIAAE 326 (460)
T ss_pred eEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc-----cchhHHHHHHHHHHH
Confidence 1468999999999952 212222112222 234778988999999999999965432 345667778887777
Q ss_pred HH
Q psy11185 174 AV 175 (312)
Q Consensus 174 ~~ 175 (312)
+.
T Consensus 327 ~i 328 (460)
T PRK06292 327 NA 328 (460)
T ss_pred Hh
Confidence 65
No 87
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.45 E-value=3.8e-13 Score=132.93 Aligned_cols=98 Identities=18% Similarity=0.332 Sum_probs=76.0
Q ss_pred HHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcc-ee---ccccccCC---CCCC
Q psy11185 212 MLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH-CI---SSDDIFSL---EKPP 283 (312)
Q Consensus 212 ~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~-~~---~~~~~~~~---~~~~ 283 (312)
.+...+|+++.++ +..++.....+.+.+| ..+.||+||+|||++|..|++||.+.. .+ +..+...+ ...+
T Consensus 68 ~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G--~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~ 145 (847)
T PRK14989 68 FYEKHGIKVLVGERAITINRQEKVIHSSAG--RTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRS 145 (847)
T ss_pred HHHhCCCEEEcCCEEEEEeCCCcEEEECCC--cEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcC
Confidence 3456799998775 5666666666777778 679999999999999999999998643 22 33444332 2357
Q ss_pred CeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 284 GKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 284 ~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
++++|||||.+|+|+|..|...+.+|+|
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~Vtv 173 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHV 173 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999988888886
No 88
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.45 E-value=7.6e-13 Score=120.64 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=69.0
Q ss_pred HhcCCceEEec-eeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcceecccc---ccCC---CCCCCe
Q psy11185 213 LRDKKVDYLNA-LGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD---IFSL---EKPPGK 285 (312)
Q Consensus 213 ~~~~gV~~~~~-~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~~~~~~~---~~~~---~~~~~~ 285 (312)
+.+.+++++.+ .+..++.....+.+ +| ..+.||+||+|||+.|..|+++|.+. .++..+ +... ...+++
T Consensus 68 ~~~~gv~~~~~~~V~~id~~~~~v~~-~~--~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~~~~~~ 143 (377)
T PRK04965 68 AEQFNLRLFPHTWVTDIDAEAQVVKS-QG--NQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQLRDAQR 143 (377)
T ss_pred HHhCCCEEECCCEEEEEECCCCEEEE-CC--eEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHhhcCCe
Confidence 45668888754 45556654444554 44 57999999999999999999999754 332222 2211 134678
Q ss_pred EEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 286 TLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 286 v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|+|||+|.+|+|+|..|...+.+|++
T Consensus 144 vvViGgG~~g~e~A~~L~~~g~~Vtl 169 (377)
T PRK04965 144 VLVVGGGLIGTELAMDLCRAGKAVTL 169 (377)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999988888876
No 89
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.43 E-value=4.8e-13 Score=132.07 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=74.9
Q ss_pred HhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcc-eec---cccccCC---CCCCC
Q psy11185 213 LRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH-CIS---SDDIFSL---EKPPG 284 (312)
Q Consensus 213 ~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~-~~~---~~~~~~~---~~~~~ 284 (312)
+...+|+++.++ +..++.....+.+.+| .++.||+||+|||+.|+.|++||.+.. .++ .++...+ ...++
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~~k~V~~~~g--~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k 141 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTDQKQVITDAG--RTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFK 141 (785)
T ss_pred HHHCCCEEEcCCeEEEEECCCCEEEECCC--cEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCC
Confidence 456799998764 6667766667777788 689999999999999999999998643 222 2222222 23567
Q ss_pred eEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 285 KTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 285 ~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+++|||||.+|+|+|..|...+.+|+|
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtv 168 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSV 168 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 899999999999999999998888886
No 90
>PRK12831 putative oxidoreductase; Provisional
Probab=99.41 E-value=9.4e-13 Score=122.81 Aligned_cols=155 Identities=21% Similarity=0.298 Sum_probs=98.0
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
...|++|||+||+|+.+|..+.+.|.+++++|.... .|+.+. ++.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~--------~GG~l~-------------------------~gi-- 183 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE--------PGGVLV-------------------------YGI-- 183 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC--------CCCeee-------------------------ecC--
Confidence 457899999999999999999999999999986432 233221 110
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNY 260 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~ 260 (312)
+. +.++.+.+..+ ....+...|+++..++.. . . .+...+. ...+.||+||+|||+ .|+.
T Consensus 184 p~---~~l~~~~~~~~-----------~~~~~~~~gv~i~~~~~v--~-~--~v~~~~~-~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 184 PE---FRLPKETVVKK-----------EIENIKKLGVKIETNVVV--G-K--TVTIDEL-LEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred CC---ccCCccHHHHH-----------HHHHHHHcCCEEEcCCEE--C-C--cCCHHHH-HhccCCCEEEEeCCCCCCCC
Confidence 00 00111111111 113455678888766532 1 1 1222222 134569999999998 6999
Q ss_pred CCCCCCCcc-eecccccc--------------CCCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 261 PDIPGAKEH-CISSDDIF--------------SLEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 261 p~~~g~~~~-~~~~~~~~--------------~~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|++||.+.. .++..+++ .....+++|+|||||++|+++|..+...+.+||+
T Consensus 244 l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtl 309 (464)
T PRK12831 244 MGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHI 309 (464)
T ss_pred CCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence 999997642 22222221 1124578999999999999999988777777886
No 91
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.41 E-value=1.4e-12 Score=118.27 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=67.3
Q ss_pred HHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcceecc---ccccC--------C-
Q psy11185 212 MLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISS---DDIFS--------L- 279 (312)
Q Consensus 212 ~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~~~~~---~~~~~--------~- 279 (312)
.++..+++++.+.+..++...-++.+.+| +++.||+||+|||+.|..|++||.....++. +++.. .
T Consensus 63 ~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (364)
T TIGR03169 63 LARQAGARFVIAEATGIDPDRRKVLLANR--PPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESAD 140 (364)
T ss_pred HHHhcCCEEEEEEEEEEecccCEEEECCC--CcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHh
Confidence 34566899988887777766567777788 5799999999999999999999964432211 11111 1
Q ss_pred -CCCCCeEEEEcCchhhHHHHHHhhc
Q psy11185 280 -EKPPGKTLVVGAGYIGKLETWDSNS 304 (312)
Q Consensus 280 -~~~~~~v~VvG~G~sa~~~a~~l~~ 304 (312)
...+++++|||+|.+|+|.|..|..
T Consensus 141 ~~~~~~~vvVvG~G~~g~E~A~~l~~ 166 (364)
T TIGR03169 141 APPGTKRLAVVGGGAAGVEIALALRR 166 (364)
T ss_pred cCCCCceEEEECCCHHHHHHHHHHHH
Confidence 1235689999999999999988874
No 92
>KOG0404|consensus
Probab=99.40 E-value=1.6e-12 Score=105.20 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=111.0
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW 179 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (312)
.++.-.++|||.||++..+|.++.+...+.+++|-.+..+. +.|+.....- +..+|.
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i----~pGGQLtTTT------------------~veNfP- 61 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGI----APGGQLTTTT------------------DVENFP- 61 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCc----CCCceeeeee------------------ccccCC-
Confidence 45566899999999999999999998888899987553221 1222111110 011111
Q ss_pred ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185 180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGGR 257 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~~ 257 (312)
.+ +.-+....+...+ ..+..+.|.+++..++...+ ..-+++.++. +.+.+|+||+|||+.
T Consensus 62 GF----Pdgi~G~~l~d~m-----------rkqs~r~Gt~i~tEtVskv~~sskpF~l~td~---~~v~~~avI~atGAs 123 (322)
T KOG0404|consen 62 GF----PDGITGPELMDKM-----------RKQSERFGTEIITETVSKVDLSSKPFKLWTDA---RPVTADAVILATGAS 123 (322)
T ss_pred CC----CcccccHHHHHHH-----------HHHHHhhcceeeeeehhhccccCCCeEEEecC---CceeeeeEEEecccc
Confidence 11 1122333333333 33445667777776654443 3345665544 488999999999999
Q ss_pred CCCCCCCCC-Cc-ce----eccccccCC--CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 258 PNYPDIPGA-KE-HC----ISSDDIFSL--EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 258 p~~p~~~g~-~~-~~----~~~~~~~~~--~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
.+...+||. +. |+ ..+.-++.. .+.+|-.+|||||.||+|.|.+|...+++|++
T Consensus 124 AkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyi 185 (322)
T KOG0404|consen 124 AKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYI 185 (322)
T ss_pred eeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEE
Confidence 988888887 33 31 122222222 36778899999999999999999999999986
No 93
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.40 E-value=2.7e-12 Score=126.86 Aligned_cols=145 Identities=19% Similarity=0.268 Sum_probs=108.2
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
.+|+|+|..|+++|.+|||+++ +++|+ .+|+++.+.+.+.|++.||++++++.++++..+ +....+.+.++
T Consensus 150 ~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~-~~~~~v~~~dG------ 222 (785)
T TIGR02374 150 LLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGA-TKADRIRFKDG------ 222 (785)
T ss_pred HHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcC-CceEEEEECCC------
Confidence 4799999999999999999998 57775 589999999999999999999999999988743 22245667665
Q ss_pred CCccccccEEEEecCcc-hHHHHHHH-HHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185 98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV 175 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~ 175 (312)
..+++|.||++.|.. ...++..+ ...+ +.+++|..++|+.|+|||+||++...+. .......+..++..+..+.
T Consensus 223 --~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~-~~gl~~~a~~qa~vaA~ni 298 (785)
T TIGR02374 223 --SSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGR-VYGLVAPLYEQAKVLADHI 298 (785)
T ss_pred --CEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCc-ccccHHHHHHHHHHHHHHh
Confidence 578999999999953 22333221 1222 3477888899999999999997655432 2223344566777777665
No 94
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.40 E-value=2.1e-12 Score=120.03 Aligned_cols=121 Identities=24% Similarity=0.299 Sum_probs=93.5
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+|||+++ +++|+.+++++.+.+.+.|++.||++++++.+++++.++ +.+.+. .++
T Consensus 167 ~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~-~~v~v~-~~g------- 237 (438)
T PRK07251 167 NIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDG-DQVLVV-TED------- 237 (438)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecC-CEEEEE-ECC-------
Confidence 5899999999999999999999 589999999999999999999999999999999997533 222222 222
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcc
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTC 150 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~ 150 (312)
.++++|.+|++.|... +.+.......+. ..+.+|..++|+.++||++||++
T Consensus 238 -~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~ 293 (438)
T PRK07251 238 -ETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVN 293 (438)
T ss_pred -eEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecC
Confidence 4689999999999632 222211112222 34778888999999999999965
No 95
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.39 E-value=2.8e-12 Score=120.04 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=107.7
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|+++|.+|||+++ +++++.+++++.+.+.+.|++.||++++++.+.+++..+ +.+.+...++.
T Consensus 180 ~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v~v~~~~g~------ 252 (461)
T TIGR01350 180 VIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQVVYENKGGE------ 252 (461)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEEEEEEeCCc------
Confidence 4799999999999999999999 589999999999999999999999999999999987643 32444443331
Q ss_pred CccccccEEEEecCcch----HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG----LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g----l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
...+++|.+|++.|... +.+.......+. ..+.+|+.++++.|+||++||++... ...+.+..++..+..
T Consensus 253 ~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~-----~~~~~A~~~g~~aa~ 327 (461)
T TIGR01350 253 TETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGP-----MLAHVASHEGIVAAE 327 (461)
T ss_pred EEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCc-----ccHHHHHHHHHHHHH
Confidence 03688999999999532 112222122222 34777888899999999999965422 355667777777776
Q ss_pred HH
Q psy11185 174 AV 175 (312)
Q Consensus 174 ~~ 175 (312)
+.
T Consensus 328 ~i 329 (461)
T TIGR01350 328 NI 329 (461)
T ss_pred HH
Confidence 65
No 96
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.39 E-value=4e-12 Score=117.54 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=93.0
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..++||||+|.+|+.++..+...+.+++++++..... ..++ +.. ...+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~------------~~~~---------------l~~-~~~g---- 57 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML------------FTPL---------------LPQ-TTTG---- 57 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc------------hhhh---------------HHH-hccc----
Confidence 4589999999999999988865556788988632100 0000 000 0001
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCe--EEEEe--------cCCCeEEEEcCeEEE
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHS--VEATM--------KNGEKKTLTAENILI 252 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~--~~v~~--------~~G~~~~i~ad~vVl 252 (312)
..+.+.+.. .+...+...+++++.+.+..++... +.+.. .+| .++.||+||+
T Consensus 58 -----~~~~~~~~~-----------~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g--~~i~yD~LVi 119 (424)
T PTZ00318 58 -----TLEFRSICE-----------PVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNT--FSVPYDKLVV 119 (424)
T ss_pred -----CCChHHhHH-----------HHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCc--eEecCCEEEE
Confidence 111111111 1223345567889888877776543 44421 344 6899999999
Q ss_pred ccCCCCCCCCCCCCCcceecccccc---CC--------------------CCCCCeEEEEcCchhhHHHHHHhhc
Q psy11185 253 ATGGRPNYPDIPGAKEHCISSDDIF---SL--------------------EKPPGKTLVVGAGYIGKLETWDSNS 304 (312)
Q Consensus 253 AtG~~p~~p~~~g~~~~~~~~~~~~---~~--------------------~~~~~~v~VvG~G~sa~~~a~~l~~ 304 (312)
|||+.|..|++||..++.++...+. .+ ....++++|||||.+|+|.|.+|..
T Consensus 120 AtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~ 194 (424)
T PTZ00318 120 AHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELAD 194 (424)
T ss_pred CCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999865422211111 00 0112489999999999999988764
No 97
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.39 E-value=4e-12 Score=118.45 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=106.9
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
.+|+|+|..|+++|.+|+++++ +++|+ .+++++.+.+.+.|++.||+++++++++++..+ +....+.. ++
T Consensus 159 ~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~-~~~~~v~~-~~------ 230 (444)
T PRK09564 159 FIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGE-DKVEGVVT-DK------ 230 (444)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecC-CcEEEEEe-CC------
Confidence 4899999999999999999998 57886 589999999999999999999999999998642 22112222 22
Q ss_pred CCccccccEEEEecCcc-hHHHHHHH-HHCC-CcEEEEeccCCCCCCcccccCCcccccccc-----hhhHHHHHHHHHH
Q psy11185 98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCI-----PKKLMHQAALLGE 169 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-----~~~~~~~a~~~~~ 169 (312)
..+++|.+|++.|.. ........ .+.+ ...+.+|+.++|+.++|||+|||+...... ..+..+.+..+++
T Consensus 231 --~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~ 308 (444)
T PRK09564 231 --GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGR 308 (444)
T ss_pred --CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHH
Confidence 358999999999963 22222111 2222 234778888899999999999976543211 1245667888888
Q ss_pred HHHHHH
Q psy11185 170 AIKDAV 175 (312)
Q Consensus 170 ~~~~~~ 175 (312)
.+..+.
T Consensus 309 ~~a~ni 314 (444)
T PRK09564 309 MVGENL 314 (444)
T ss_pred HHHHHh
Confidence 887765
No 98
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.39 E-value=2e-12 Score=120.41 Aligned_cols=99 Identities=22% Similarity=0.291 Sum_probs=67.2
Q ss_pred HhcCCceEEec-eeEEeeC--CeEEEEe-cCCCeEEEEcCeEEEccCCCCCCCCCCCCCc-ceecccc---ccCC-----
Q psy11185 213 LRDKKVDYLNA-LGKFIDQ--HSVEATM-KNGEKKTLTAENILIATGGRPNYPDIPGAKE-HCISSDD---IFSL----- 279 (312)
Q Consensus 213 ~~~~gV~~~~~-~~~~~~~--~~~~v~~-~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~-~~~~~~~---~~~~----- 279 (312)
+...++++..+ .+..++. ..+.++. .+|+...+.||+||+|||+.|..|+++|.+. ..++... ...+
T Consensus 66 ~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~ 145 (444)
T PRK09564 66 FIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLK 145 (444)
T ss_pred HHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHh
Confidence 45668888644 4555543 4455543 2352333449999999999999999998753 2332222 1111
Q ss_pred CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 280 EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 280 ~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
...+++|+|||+|.+|+|.+..+...+.+|++
T Consensus 146 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl 177 (444)
T PRK09564 146 DEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRI 177 (444)
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHhcCCcEEE
Confidence 13468999999999999999998888888876
No 99
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.38 E-value=3.9e-12 Score=127.02 Aligned_cols=152 Identities=24% Similarity=0.326 Sum_probs=98.8
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..+++|||+||+|+++|..|.+.|.+++++|+... .|+... ++ ++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~--------~GG~l~-------------------------yG--IP 350 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD--------LGGVLR-------------------------YG--IP 350 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC--------CCceEE-------------------------cc--CC
Confidence 56899999999999999999999999999997542 343211 11 11
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~p 261 (312)
. ++.+.+.+.+ ....+...||++..+.... ..++.++. ....||+||+|||+ .|+.+
T Consensus 351 ~---~rlp~~vi~~------------~i~~l~~~Gv~f~~n~~vG-----~dit~~~l--~~~~yDAV~LAtGA~~pr~l 408 (944)
T PRK12779 351 E---FRLPNQLIDD------------VVEKIKLLGGRFVKNFVVG-----KTATLEDL--KAAGFWKIFVGTGAGLPTFM 408 (944)
T ss_pred C---CcChHHHHHH------------HHHHHHhhcCeEEEeEEec-----cEEeHHHh--ccccCCEEEEeCCCCCCCcC
Confidence 1 1111111111 1134556789887665321 23444444 44579999999998 58889
Q ss_pred CCCCCCcc-eeccccccC----------------CCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 262 DIPGAKEH-CISSDDIFS----------------LEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~-~~~~~~~~~----------------~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
++||.+.. .++..+++. ....+++|+|||||++|+++|..+...+.+|++
T Consensus 409 ~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtl 475 (944)
T PRK12779 409 NVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTI 475 (944)
T ss_pred CCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 99997543 222222211 012467899999999999999887776667876
No 100
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.37 E-value=4.2e-12 Score=117.92 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=65.7
Q ss_pred hcCCceEEe-ceeEEeeCC--eEEEEecC-CCeEEEEcCeEEEccCCCCCCCCCCCCCcc-eeccccccCC-----CCCC
Q psy11185 214 RDKKVDYLN-ALGKFIDQH--SVEATMKN-GEKKTLTAENILIATGGRPNYPDIPGAKEH-CISSDDIFSL-----EKPP 283 (312)
Q Consensus 214 ~~~gV~~~~-~~~~~~~~~--~~~v~~~~-G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~-~~~~~~~~~~-----~~~~ 283 (312)
.+.++++.. ..+..++.. .+.+...+ ++..++.||+||+|||+.|+.|++++...+ ..+..+...+ ...+
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 148 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQV 148 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCC
Confidence 456888854 445555543 44444422 334468999999999999988876643222 1111222111 2357
Q ss_pred CeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 284 GKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 284 ~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
++++|||||.+|+|.|..+...+.+|+|
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtl 176 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTL 176 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 8999999999999999999988888886
No 101
>KOG2495|consensus
Probab=99.36 E-value=3e-12 Score=112.85 Aligned_cols=147 Identities=18% Similarity=0.261 Sum_probs=107.5
Q ss_pred hhhhhhhhhHhhhccC--------------CeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCC
Q psy11185 18 KVDSGLECAGFLNGLG--------------FNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADG 82 (312)
Q Consensus 18 ~~~ig~E~A~~l~~~g--------------~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~ 82 (312)
+-+.|||+|.+|+..= .+|||+|. +.+|..||+.+.+|++++|.+.||.+.+++.|..+...
T Consensus 226 GGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~--- 302 (491)
T KOG2495|consen 226 GGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEK--- 302 (491)
T ss_pred CCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCc---
Confidence 3458999999998762 58999998 68999999999999999999999999999999988532
Q ss_pred eeEEEEeeccccccCCCccccccEEEEecCcchHHHHHHHH----HCCCcEEEEeccC-CCCCCcccccCCcccccccch
Q psy11185 83 KLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAA----AHGRKVIVLDYVI-PSPQGTTWGLGGTCVNVGCIP 157 (312)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~~----~~~~~~~~ve~~~-~~~~~~v~a~Gd~~~~~~~~~ 157 (312)
.+.+..++|+ .++++|-+++|++|...-.....+. +.+.+.+.+|+.+ ..+.++|||+|||....+..|
T Consensus 303 ~I~~~~~~g~------~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~ 376 (491)
T KOG2495|consen 303 TIHAKTKDGE------IEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKP 376 (491)
T ss_pred EEEEEcCCCc------eeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCcc
Confidence 2344444332 2689999999999954333333332 2333467777665 568899999999664555443
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy11185 158 KKLMHQAALLGEAIKDAV 175 (312)
Q Consensus 158 ~~~~~~a~~~~~~~~~~~ 175 (312)
..+.|.+++..+..+.
T Consensus 377 --tAQVA~QqG~yLAk~f 392 (491)
T KOG2495|consen 377 --TAQVAEQQGAYLAKNF 392 (491)
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 4556667777666653
No 102
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.36 E-value=7e-12 Score=88.01 Aligned_cols=72 Identities=29% Similarity=0.342 Sum_probs=65.9
Q ss_pred hhhhhhhhHhhhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeec
Q psy11185 19 VDSGLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNV 91 (312)
Q Consensus 19 ~~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~ 91 (312)
-.+|+|+|.+|+++|++|||+++ +.+++.+++++++++.+.|++.||++++++.+.+++.++++ +.|++++|
T Consensus 8 G~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~V~~~~g 80 (80)
T PF00070_consen 8 GFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VEVTLEDG 80 (80)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EEEEEETS
T ss_pred CHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEEecC
Confidence 36899999999999999999999 58889999999999999999999999999999999988777 66887764
No 103
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.36 E-value=4e-12 Score=118.27 Aligned_cols=152 Identities=22% Similarity=0.284 Sum_probs=97.0
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
...+++|||+|++|+.+|..+.+.+.+++++|.... .|+.+. ++.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~--------~GG~l~-------------------------~gi-- 176 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK--------PGGVVT-------------------------YGI-- 176 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC--------CCcEee-------------------------ecC--
Confidence 356999999999999999999999999999997432 222110 110
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNY 260 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~ 260 (312)
+ ....+.+.+ . .....+...+|++..+... . ..+...+. ...||+||+|||+ .|+.
T Consensus 177 p---~~~~~~~~~-~-----------~~~~~l~~~gv~~~~~~~v---~--~~v~~~~~---~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 177 P---EFRLPKEIV-V-----------TEIKTLKKLGVTFRMNFLV---G--KTATLEEL---FSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred C---CccCCHHHH-H-----------HHHHHHHhCCcEEEeCCcc---C--CcCCHHHH---HhhCCEEEEeCCCCCCCc
Confidence 0 011111111 0 0112345678998776532 1 12333333 2468999999997 7999
Q ss_pred CCCCCCCcc-eeccccccC---------------CCCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 261 PDIPGAKEH-CISSDDIFS---------------LEKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 261 p~~~g~~~~-~~~~~~~~~---------------~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|++||.+.. .++..++.. ....+++|+|||+|++|+|+|..+...+.+||+
T Consensus 234 ~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtl 300 (449)
T TIGR01316 234 MNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHC 300 (449)
T ss_pred CCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 999997532 222222210 113567899999999999999998877777886
No 104
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.34 E-value=9.9e-12 Score=115.21 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=106.8
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCC-CccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVP-LRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~-l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
.+|+|+|..|++.|++||++++ +++ .+.+++++.+.+.+.|++.||++++++.+.++..+ +.+ +.+.++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~-v~~~~g------ 217 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV-KVFTSG------ 217 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE-EEEcCC------
Confidence 4899999999999999999999 466 47789999999999999999999999999998743 322 445444
Q ss_pred CCccccccEEEEecCcc-hHHHHHHH-HHCCC-cEEEEeccCCCCCCcccccCCcccccccc-----hhhHHHHHHHHHH
Q psy11185 98 NTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCVNVGCI-----PKKLMHQAALLGE 169 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-----~~~~~~~a~~~~~ 169 (312)
..+++|.+|++.|.. .......+ .+.+. ..+.+|+.++|+.|+||++||++...... .....+.+..+++
T Consensus 218 --~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 295 (427)
T TIGR03385 218 --GVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGR 295 (427)
T ss_pred --CEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHH
Confidence 468999999999963 22222221 12222 34677888899999999999976542211 1235566778888
Q ss_pred HHHHHH
Q psy11185 170 AIKDAV 175 (312)
Q Consensus 170 ~~~~~~ 175 (312)
.+..+.
T Consensus 296 ~~a~ni 301 (427)
T TIGR03385 296 IAGENI 301 (427)
T ss_pred HHHHHh
Confidence 877765
No 105
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.32 E-value=1.6e-11 Score=115.10 Aligned_cols=145 Identities=21% Similarity=0.266 Sum_probs=111.2
Q ss_pred hhhhhhHhhhccCCeEEEEEcc-CCC-ccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 21 SGLECAGFLNGLGFNATVMIRS-VPL-RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~~-~~l-~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.|+|+|..|..+|.+|++++.+ .++ +++|+...+.+++.+.++||++++++..+++.. .+....+.+++|
T Consensus 156 LGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~DG------- 227 (793)
T COG1251 156 LGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFADG------- 227 (793)
T ss_pred hhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc-CcceeeEeecCC-------
Confidence 6899999999999999999985 554 678999999999999999999999988887764 333457888887
Q ss_pred CccccccEEEEecC-cchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGG-SGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAV 175 (312)
Q Consensus 99 ~~~~~~d~vivg~G-~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~ 175 (312)
..+++|.||++.| +.++.++...--.-++.++++.+++|+.|+|||+|.|+...+.. ..+.-....+.+.+.+..
T Consensus 228 -~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~mqTsdpdIYAvGEcae~~g~~-yGLVaP~yeq~~v~a~hl 303 (793)
T COG1251 228 -TEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQTSDPDIYAVGECAEHRGKV-YGLVAPLYEQAKVLADHL 303 (793)
T ss_pred -CcccceeEEEecccccccHhHHhcCcCcCCCeeecccccccCCCeeehhhHHHhcCcc-ceehhHHHHHHHHHHHHh
Confidence 6789999999999 45666655432222347999999999999999999976665432 223334455566665544
No 106
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.31 E-value=3e-11 Score=119.56 Aligned_cols=150 Identities=21% Similarity=0.247 Sum_probs=93.4
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..+++|||+||+|+.+|..|.+.|.+++++|+... .|+.+... ++
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~--------~GG~lr~~---------------------------IP 583 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN--------AGGVVKNI---------------------------IP 583 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc--------cCcceeee---------------------------cc
Confidence 45899999999999999999999999999997542 23322110 00
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p 261 (312)
..+++.+.+. .....+...||++..++.. .+...+. ....||+||||||+. |+.+
T Consensus 584 ---~~Rlp~evL~------------~die~l~~~GVe~~~gt~V-------di~le~L--~~~gYDaVILATGA~~~~~l 639 (1019)
T PRK09853 584 ---QFRIPAELIQ------------HDIEFVKAHGVKFEFGCSP-------DLTVEQL--KNEGYDYVVVAIGADKNGGL 639 (1019)
T ss_pred ---cccccHHHHH------------HHHHHHHHcCCEEEeCcee-------EEEhhhh--eeccCCEEEECcCCCCCCCC
Confidence 0111111110 0113445678988776532 1222333 455699999999986 5556
Q ss_pred CCCCCCcceecccccc-------CCCCCCCeEEEEcCchhhHHHHHHhhcC--ceeeee
Q psy11185 262 DIPGAKEHCISSDDIF-------SLEKPPGKTLVVGAGYIGKLETWDSNSG--CGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~~~~~~~~~-------~~~~~~~~v~VvG~G~sa~~~a~~l~~~--~~~V~~ 311 (312)
+++|.+...++..++. .....+++|+|||||++|+++|..+... +++|++
T Consensus 640 ~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTL 698 (1019)
T PRK09853 640 KLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTV 698 (1019)
T ss_pred CCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEE
Confidence 7888753333222111 1124578999999999999988775543 357776
No 107
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.31 E-value=1.1e-11 Score=122.49 Aligned_cols=153 Identities=26% Similarity=0.366 Sum_probs=96.3
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
...+++|||+||+|+.+|..+.+.|.+++++|+... .|+... ++.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~--------~GG~l~-------------------------~gi-- 474 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE--------IGGVLK-------------------------YGI-- 474 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC--------CCCeee-------------------------ecC--
Confidence 356899999999999999999999999999997432 222110 111
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNY 260 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~ 260 (312)
+. +..+.. + +. .....+...||++..+... . . .++.++. ....||+||+|||+ .|+.
T Consensus 475 p~---~rlp~~-~---~~--------~~~~~l~~~gv~~~~~~~v--~-~--~v~~~~l--~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 475 PE---FRLPKK-I---VD--------VEIENLKKLGVKFETDVIV--G-K--TITIEEL--EEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred CC---CCCCHH-H---HH--------HHHHHHHHCCCEEECCCEE--C-C--cCCHHHH--hhcCCCEEEEeCCCCCCCC
Confidence 00 111111 1 10 1112345678998765532 1 1 1223333 35669999999998 6999
Q ss_pred CCCCCCCcc-eeccccccC--------------CCCCCCeEEEEcCchhhHHHHHHhhcCcee-eee
Q psy11185 261 PDIPGAKEH-CISSDDIFS--------------LEKPPGKTLVVGAGYIGKLETWDSNSGCGN-VTI 311 (312)
Q Consensus 261 p~~~g~~~~-~~~~~~~~~--------------~~~~~~~v~VvG~G~sa~~~a~~l~~~~~~-V~~ 311 (312)
|++||.+.. .++..+++. ....+++|+|||||++|+++|..+...+.+ ||+
T Consensus 533 l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtl 599 (752)
T PRK12778 533 MNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTI 599 (752)
T ss_pred CCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 999997643 222222211 113467899999999999988887665554 876
No 108
>PRK10262 thioredoxin reductase; Provisional
Probab=99.30 E-value=3.3e-11 Score=107.45 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=92.3
Q ss_pred hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNT 99 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~ 99 (312)
++|+|+|..|+++|++||+++++..+. .++.+.+.+.+.|++.||++++++.++++..+..+...+.+.++.... ..
T Consensus 156 ~~g~e~A~~l~~~~~~Vtlv~~~~~~~-~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~--~~ 232 (321)
T PRK10262 156 NTAVEEALYLSNIASEVHLIHRRDGFR-AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSD--NI 232 (321)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCccC-CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCC--eE
Confidence 689999999999999999999953233 457788889999999999999999999997543232346665432100 01
Q ss_pred ccccccEEEEecCcch-HHHHHHHHHCCCcEEEEec-----cCCCCCCcccccCCcccc
Q psy11185 100 HKYDYDLLVLGGGSGG-LAAAKEAAAHGRKVIVLDY-----VIPSPQGTTWGLGGTCVN 152 (312)
Q Consensus 100 ~~~~~d~vivg~G~~g-l~~a~~~~~~~~~~~~ve~-----~~~~~~~~v~a~Gd~~~~ 152 (312)
.++++|.|||+.|... ..+.......+...+.++. +++|+.|+|||+||++..
T Consensus 233 ~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~ 291 (321)
T PRK10262 233 ESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDH 291 (321)
T ss_pred EEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCC
Confidence 4689999999999632 2222212223334566675 678999999999996543
No 109
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.28 E-value=3.6e-11 Score=109.12 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=100.0
Q ss_pred hhhhhhhHhhhc----cC--CeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccc
Q psy11185 20 DSGLECAGFLNG----LG--FNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAE 93 (312)
Q Consensus 20 ~ig~E~A~~l~~----~g--~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~ 93 (312)
.+|+|+|..|++ .| .+|||+..+++|+.+++++++.+.+.|++.||++++++.+.+++. + .+.+.++
T Consensus 155 ~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~--~v~~~~g-- 227 (364)
T TIGR03169 155 AAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPD---G--ALILADG-- 227 (364)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC---C--eEEeCCC--
Confidence 479999999975 34 589999446888889999999999999999999999999998852 2 4666554
Q ss_pred cccCCCccccccEEEEecCcchHHHHHHH-HHC-CCcEEEEeccCCC-CCCcccccCCcccccccchhhHHHHHHHHHHH
Q psy11185 94 VRQDNTHKYDYDLLVLGGGSGGLAAAKEA-AAH-GRKVIVLDYVIPS-PQGTTWGLGGTCVNVGCIPKKLMHQAALLGEA 170 (312)
Q Consensus 94 ~~~~~~~~~~~d~vivg~G~~gl~~a~~~-~~~-~~~~~~ve~~~~~-~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~ 170 (312)
.++++|.+|++.|.......... ... ....+.+|..+++ +.++||++||++........+....+..++..
T Consensus 228 ------~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~ 301 (364)
T TIGR03169 228 ------RTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPI 301 (364)
T ss_pred ------CEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHH
Confidence 57899999999995432211111 111 1235777777776 99999999997654322112333445556655
Q ss_pred HHHHH
Q psy11185 171 IKDAV 175 (312)
Q Consensus 171 ~~~~~ 175 (312)
+..+.
T Consensus 302 ~a~ni 306 (364)
T TIGR03169 302 LAANL 306 (364)
T ss_pred HHHHH
Confidence 55443
No 110
>KOG1336|consensus
Probab=99.25 E-value=1.9e-11 Score=109.51 Aligned_cols=125 Identities=20% Similarity=0.227 Sum_probs=100.6
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCc-cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe-eEEEEeecccccc
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLR-GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQ 96 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~-~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~ 96 (312)
.||||+|..|..-+++||+|++ ..+|+ .|-+.+++.+++.+++.||++++++.+.+++.+.++. ..|.+.++
T Consensus 223 ~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg----- 297 (478)
T KOG1336|consen 223 FIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG----- 297 (478)
T ss_pred HHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC-----
Confidence 4899999999999999999999 57776 5889999999999999999999999999998776554 47788777
Q ss_pred CCCccccccEEEEecCcchHHH--HHHHHHCCCcEEEEeccCCCCCCcccccCCcccc
Q psy11185 97 DNTHKYDYDLLVLGGGSGGLAA--AKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN 152 (312)
Q Consensus 97 ~~~~~~~~d~vivg~G~~gl~~--a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~ 152 (312)
.++++|+||+|.|.....- ...........+-++...+++.|+|||+||+.+.
T Consensus 298 ---~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~f 352 (478)
T KOG1336|consen 298 ---KTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIGDVATF 352 (478)
T ss_pred ---CEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCcccccceeec
Confidence 6789999999999522211 1111112223588899999999999999997654
No 111
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.24 E-value=1.2e-10 Score=102.56 Aligned_cols=191 Identities=14% Similarity=0.026 Sum_probs=106.1
Q ss_pred cccccEEEEecCcchHHHHHHHHHCC-CcEEEEeccCCCCCC-c---------ccccCCcccccccchhhHHHHHHHHHH
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIPSPQG-T---------TWGLGGTCVNVGCIPKKLMHQAALLGE 169 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~~~~~~-~---------v~a~Gd~~~~~~~~~~~~~~~a~~~~~ 169 (312)
....|+|.||.||..|++|..+.+.+ .+.+.+|+...-++. + +-.+-|.++-.+...+-.+.....+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 44689999999999999999887765 457888876655543 2 122223222222111111222222222
Q ss_pred HHHHHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee-CCeEEEEecCCCeEEEEcC
Q psy11185 170 AIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID-QHSVEATMKNGEKKTLTAE 248 (312)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~-~~~~~v~~~~G~~~~i~ad 248 (312)
.+.....+. ...+...++..|+.+.+..+. .-+.|-++..-.....+ .....+.+.++ .++.|+
T Consensus 83 RLy~Fl~~e-------~f~i~R~Ey~dY~~Waa~~l~------~~rfg~~V~~i~~~~~d~~~~~~~~t~~~--~~y~ar 147 (436)
T COG3486 83 RLYEFLNYE-------TFHIPRREYNDYCQWAASQLP------SLRFGEEVTDISSLDGDAVVRLFVVTANG--TVYRAR 147 (436)
T ss_pred hHhhhhhhh-------cccccHHHHHHHHHHHHhhCC------ccccCCeeccccccCCcceeEEEEEcCCC--cEEEee
Confidence 222211111 344555555555555444432 11112222111100001 11223555666 599999
Q ss_pred eEEEccCCCCCCCCCC-CCCc-ceeccccccCCC--CCCC-eEEEEcCchhhHHHHHHhhcCc
Q psy11185 249 NILIATGGRPNYPDIP-GAKE-HCISSDDIFSLE--KPPG-KTLVVGAGYIGKLETWDSNSGC 306 (312)
Q Consensus 249 ~vVlAtG~~p~~p~~~-g~~~-~~~~~~~~~~~~--~~~~-~v~VvG~G~sa~~~a~~l~~~~ 306 (312)
.||+++|.+|.+|+.. .+.. .++|+.++.... ...+ +|+|||||+||.|+...|....
T Consensus 148 ~lVlg~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~ 210 (436)
T COG3486 148 NLVLGVGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQ 210 (436)
T ss_pred eEEEccCCCcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCC
Confidence 9999999999998733 4433 467777766432 2334 4999999999999988876653
No 112
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.24 E-value=1e-10 Score=116.33 Aligned_cols=150 Identities=19% Similarity=0.282 Sum_probs=92.7
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..+++|||+||+|+++|..|.+.|.+++++|+... .|+.+... .+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~--------lGG~l~~~---------------------------IP 581 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK--------PGGVVKNI---------------------------IP 581 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc--------cCceeeec---------------------------cc
Confidence 46899999999999999999999999999997542 34322110 00
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p 261 (312)
..+...+.+. .....+...||++..+... .++ ..+. ....||+||+|||++ ++.+
T Consensus 582 ---~~rlp~e~l~------------~~ie~l~~~GVe~~~g~~~-----d~~--ve~l--~~~gYDaVIIATGA~~~~~l 637 (1012)
T TIGR03315 582 ---EFRISAESIQ------------KDIELVKFHGVEFKYGCSP-----DLT--VAEL--KNQGYKYVILAIGAWKHGPL 637 (1012)
T ss_pred ---ccCCCHHHHH------------HHHHHHHhcCcEEEEeccc-----ceE--hhhh--hcccccEEEECCCCCCCCCC
Confidence 0111111110 0112345668888765321 111 1222 345689999999986 4556
Q ss_pred CCCCCCcceecccccc-------CCCCCCCeEEEEcCchhhHHHHHHhhc--Cceeeee
Q psy11185 262 DIPGAKEHCISSDDIF-------SLEKPPGKTLVVGAGYIGKLETWDSNS--GCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~~~~~~~~~-------~~~~~~~~v~VvG~G~sa~~~a~~l~~--~~~~V~~ 311 (312)
.++|.....++..++. .....+++|+|||||++|+++|..+.. ++++|++
T Consensus 638 ~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtL 696 (1012)
T TIGR03315 638 RLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTV 696 (1012)
T ss_pred CcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEE
Confidence 7887644333222221 112467899999999999998877653 5567776
No 113
>KOG1336|consensus
Probab=99.24 E-value=3.7e-11 Score=107.72 Aligned_cols=98 Identities=27% Similarity=0.334 Sum_probs=78.2
Q ss_pred HHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcc----eeccccccC---CCCCC
Q psy11185 212 MLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH----CISSDDIFS---LEKPP 283 (312)
Q Consensus 212 ~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~----~~~~~~~~~---~~~~~ 283 (312)
..+..+|+++.++ +..++-..-++.+.+| +++.++++|||||+.|+.|++||.... ....++... .-...
T Consensus 136 ~Yke~gIe~~~~t~v~~~D~~~K~l~~~~G--e~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~ 213 (478)
T KOG1336|consen 136 FYKEKGIELILGTSVVKADLASKTLVLGNG--ETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLG 213 (478)
T ss_pred hHhhcCceEEEcceeEEeeccccEEEeCCC--ceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccC
Confidence 4578899997776 6667777778888999 899999999999999999999999643 223333322 22346
Q ss_pred CeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 284 GKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 284 ~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
++|+++|+|..|+|.+.+|...+.+||+
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~ 241 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTV 241 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEE
Confidence 6799999999999999999999999987
No 114
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.23 E-value=2.2e-10 Score=101.08 Aligned_cols=145 Identities=20% Similarity=0.299 Sum_probs=92.8
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHH-HHHHHHHHHHHHHHHcCCcc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM-HQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~ 181 (312)
.+|++|||+||+|+.+|..+.+.|.+|+++|.......+=..+-|+.|+.++.-....+ ......++.+....
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal------ 76 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSAL------ 76 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHH------
Confidence 47999999999999999999999999999998877666666667777876553222111 11111111111100
Q ss_pred CCccccccCHHHHHHHHHH---------------H---HHHhhHHHHHHHhcCCceEEece-eEEee--CCeEEEEecCC
Q psy11185 182 PNVKSVQHNWANLREAVQN---------------H---VKSVNWVTRVMLRDKKVDYLNAL-GKFID--QHSVEATMKNG 240 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~~~~gV~~~~~~-~~~~~--~~~~~v~~~~G 240 (312)
..++...+..++.. . ....-..+..++++.||++...+ ...++ ...+.+.+++|
T Consensus 77 -----~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g 151 (408)
T COG2081 77 -----ARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSG 151 (408)
T ss_pred -----HhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCC
Confidence 11122222222211 1 23344456678889999997776 33333 34788999999
Q ss_pred CeEEEEcCeEEEccC--CCCCC
Q psy11185 241 EKKTLTAENILIATG--GRPNY 260 (312)
Q Consensus 241 ~~~~i~ad~vVlAtG--~~p~~ 260 (312)
.++.+|+||+||| ++|+.
T Consensus 152 --~~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 152 --ETVKCDSLILATGGKSWPKL 171 (408)
T ss_pred --CEEEccEEEEecCCcCCCCC
Confidence 5899999999999 55643
No 115
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.23 E-value=6.6e-11 Score=110.59 Aligned_cols=152 Identities=22% Similarity=0.269 Sum_probs=93.9
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
...+++|||+|++|+.+|..+.+.+.+++++|+... .|+... ++.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~--------~gG~l~-------------------------~gi-- 183 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK--------AGGLLR-------------------------YGI-- 183 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC--------CCcEee-------------------------ccC--
Confidence 457899999999999999999999999999987532 122100 010
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNY 260 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~ 260 (312)
+. .... ..+. ......+...++++..++... . .+...+. .+.||+||+|||+. |+.
T Consensus 184 p~---~~~~-~~~~-----------~~~~~~l~~~gv~~~~~~~v~---~--~v~~~~~---~~~~d~vvlAtGa~~~~~ 240 (457)
T PRK11749 184 PE---FRLP-KDIV-----------DREVERLLKLGVEIRTNTEVG---R--DITLDEL---RAGYDAVFIGTGAGLPRF 240 (457)
T ss_pred CC---ccCC-HHHH-----------HHHHHHHHHcCCEEEeCCEEC---C--ccCHHHH---HhhCCEEEEccCCCCCCC
Confidence 00 0001 0111 111233556688887665421 1 1222333 26799999999985 777
Q ss_pred CCCCCCCcc-eeccccccC---------CCCCCCeEEEEcCchhhHHHHHHhhcC-ceeeee
Q psy11185 261 PDIPGAKEH-CISSDDIFS---------LEKPPGKTLVVGAGYIGKLETWDSNSG-CGNVTI 311 (312)
Q Consensus 261 p~~~g~~~~-~~~~~~~~~---------~~~~~~~v~VvG~G~sa~~~a~~l~~~-~~~V~~ 311 (312)
++++|.+.. .++..++.. ....+++|+|||+|++|+|+|..+... +++|++
T Consensus 241 ~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtl 302 (457)
T PRK11749 241 LGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTI 302 (457)
T ss_pred CCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 888887532 222212111 112578999999999999999887655 447876
No 116
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.23 E-value=5.2e-11 Score=107.15 Aligned_cols=154 Identities=24% Similarity=0.322 Sum_probs=101.0
Q ss_pred ccEEEEecCcchHHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
..+||+|+|.+|+.++..+.... .+++++|++..... .+.+.. ...+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~----------------~plL~e------------va~g--- 52 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLF----------------TPLLYE------------VATG--- 52 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcccc----------------chhhhh------------hhcC---
Confidence 36899999999999999998754 67899987432100 000000 0001
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
.++... ....+...+... ++.++.+++..++...-+|.+.++ ..+.||+||+|+|+.+..
T Consensus 53 ------~l~~~~-----------i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~--~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 53 ------TLSESE-----------IAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADL--GEISYDYLVVALGSETNY 113 (405)
T ss_pred ------CCChhh-----------eeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCCC--ccccccEEEEecCCcCCc
Confidence 011111 111122334434 499999998888887777777775 689999999999999999
Q ss_pred CCCCCCCcceeccc---cccC-----------CCCCCC-----eEEEEcCchhhHHHHHHhhcCce
Q psy11185 261 PDIPGAKEHCISSD---DIFS-----------LEKPPG-----KTLVVGAGYIGKLETWDSNSGCG 307 (312)
Q Consensus 261 p~~~g~~~~~~~~~---~~~~-----------~~~~~~-----~v~VvG~G~sa~~~a~~l~~~~~ 307 (312)
+.+||..++.+..+ +... .....+ .++|+|||++|+|.|.+|.....
T Consensus 114 fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~ 179 (405)
T COG1252 114 FGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLH 179 (405)
T ss_pred CCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHH
Confidence 99999877644322 2211 111222 59999999999999988776543
No 117
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.22 E-value=5.4e-11 Score=119.92 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=93.4
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..+++|||+||+|+++|..|.+.|.+++++|.... .|+... ++ ++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~--------~GG~l~-------------------------~g--ip 474 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHV--------VGGVLQ-------------------------YG--IP 474 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC--------Ccceee-------------------------cc--CC
Confidence 46899999999999999999999999999996432 222110 11 01
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~p 261 (312)
. .+...+ + .......+...||++..+... + ..+++..-. ....||+||||||+ .|+.|
T Consensus 475 ~---~rl~~e-~-----------~~~~~~~l~~~Gv~~~~~~~v--g-~~~~~~~l~---~~~~yDaViIATGa~~pr~l 533 (1006)
T PRK12775 475 S---FRLPRD-I-----------IDREVQRLVDIGVKIETNKVI--G-KTFTVPQLM---NDKGFDAVFLGVGAGAPTFL 533 (1006)
T ss_pred c---cCCCHH-H-----------HHHHHHHHHHCCCEEEeCCcc--C-CccCHHHHh---hccCCCEEEEecCCCCCCCC
Confidence 0 111111 1 111223456678998766432 1 112221100 12458999999998 58989
Q ss_pred CCCCCCcc-eecccccc---------------CCCCCCCeEEEEcCchhhHHHHHHhh-cCceeeee
Q psy11185 262 DIPGAKEH-CISSDDIF---------------SLEKPPGKTLVVGAGYIGKLETWDSN-SGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~-~~~~~~~~---------------~~~~~~~~v~VvG~G~sa~~~a~~l~-~~~~~V~~ 311 (312)
++||.+.. .++..+++ .....+++|+|||||++|++++..+. .+++.|++
T Consensus 534 ~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vti 600 (1006)
T PRK12775 534 GIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRC 600 (1006)
T ss_pred CCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence 99997532 22222211 11235789999999999998877754 45666764
No 118
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.22 E-value=2.4e-10 Score=115.64 Aligned_cols=162 Identities=22% Similarity=0.205 Sum_probs=96.1
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
..+|++|||+||+|+.+|..+.+.+.+++++|+... .|+...... . ..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~--------~GG~~~~~~----------------------~--~~ 209 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE--------AGGSLLSEA----------------------E--TI 209 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC--------CCCeeeccc----------------------c--cc
Confidence 468999999999999999999999999999997543 222111000 0 00
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcC-CceEEece-eEEeeCC-eE-EEEe--------cC----CCeEEE
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK-KVDYLNAL-GKFIDQH-SV-EATM--------KN----GEKKTL 245 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~~~~~~-~~~~~~~-~~-~v~~--------~~----G~~~~i 245 (312)
+ ..+...+ . ..+..++... ++++..++ +..+... .+ .+.. .+ +....+
T Consensus 210 ~-----g~~~~~~---~--------~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i 273 (985)
T TIGR01372 210 D-----GKPAADW---A--------AATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRI 273 (985)
T ss_pred C-----CccHHHH---H--------HHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEE
Confidence 0 0011111 0 1112233333 47776543 3322211 11 1100 01 112378
Q ss_pred EcCeEEEccCCCCCCCCCCCCCcc-eecccc---ccC-CC-CCCCeEEEEcCchhhHHHHHHhhcCc-eeeee
Q psy11185 246 TAENILIATGGRPNYPDIPGAKEH-CISSDD---IFS-LE-KPPGKTLVVGAGYIGKLETWDSNSGC-GNVTI 311 (312)
Q Consensus 246 ~ad~vVlAtG~~p~~p~~~g~~~~-~~~~~~---~~~-~~-~~~~~v~VvG~G~sa~~~a~~l~~~~-~~V~~ 311 (312)
.||.||||||+.++.|+++|.+.. .++... +.. .. ..+++|+|||+|.+|++.|..|...+ +.|+|
T Consensus 274 ~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~v 346 (985)
T TIGR01372 274 RAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAI 346 (985)
T ss_pred EcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEE
Confidence 999999999999999999997653 222221 211 11 24678999999999999999987766 44554
No 119
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.20 E-value=2e-10 Score=103.73 Aligned_cols=160 Identities=24% Similarity=0.246 Sum_probs=91.2
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
...+++|||+|++|+.+|..+.+.+.+++++++... .|+.... + .
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~--------~gg~~~~-------------------------~--~ 61 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE--------PGGLMLF-------------------------G--I 61 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC--------CCceeee-------------------------c--C
Confidence 456899999999999999999999999999987432 1211000 0 0
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee-------CCeEEEEecCCCeEEEEcCeEEEcc
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID-------QHSVEATMKNGEKKTLTAENILIAT 254 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~-------~~~~~v~~~~G~~~~i~ad~vVlAt 254 (312)
+ ....+.+.+. . ....+...++++..++..... ...+..+..+.+...+.||+||+||
T Consensus 62 ~---~~~~~~~~~~-----------~-~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAt 126 (352)
T PRK12770 62 P---EFRIPIERVR-----------E-GVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIAT 126 (352)
T ss_pred c---ccccCHHHHH-----------H-HHHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEe
Confidence 0 0001111111 0 112234447777655432111 0111111111111247899999999
Q ss_pred CC-CCCCCCCCCCCcc-eecccc-----------ccCCC----CCCCeEEEEcCchhhHHHHHHhhcCce-eeee
Q psy11185 255 GG-RPNYPDIPGAKEH-CISSDD-----------IFSLE----KPPGKTLVVGAGYIGKLETWDSNSGCG-NVTI 311 (312)
Q Consensus 255 G~-~p~~p~~~g~~~~-~~~~~~-----------~~~~~----~~~~~v~VvG~G~sa~~~a~~l~~~~~-~V~~ 311 (312)
|+ .|+.|++||.+.. ..++.+ +.... ..+++++|||+|++|+|+|..+...+. +|+|
T Consensus 127 Gs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtv 201 (352)
T PRK12770 127 GTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYL 201 (352)
T ss_pred CCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 98 4788899987542 222211 11111 225789999999999999888765444 4776
No 120
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.17 E-value=2.7e-10 Score=107.86 Aligned_cols=124 Identities=19% Similarity=0.172 Sum_probs=86.6
Q ss_pred hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
++|+|+|..|+++|.+|||+++. +++. + ..+.+.+++ .||++++++.+++++.+++....+.+.++..+.
T Consensus 362 ~~g~E~A~~L~~~g~~Vtli~~~~~l~~--~----~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~-- 433 (515)
T TIGR03140 362 NSGIEAAIDLAGIVRHVTVLEFADELKA--D----KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGE-- 433 (515)
T ss_pred HHHHHHHHHHHhcCcEEEEEEeCCcCCh--h----HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCc--
Confidence 58999999999999999999984 4432 2 345666665 699999999999987542222246665542211
Q ss_pred CCccccccEEEEecCcch-HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccc
Q psy11185 98 NTHKYDYDLLVLGGGSGG-LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVN 152 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~~g-l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~ 152 (312)
...+++|.||++.|... ......+...+. ..+.+|..++|+.|+|||+||++..
T Consensus 434 -~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~ 489 (515)
T TIGR03140 434 -EKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTV 489 (515)
T ss_pred -EEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCCCCCCEEEcccccCC
Confidence 14689999999999632 222222233322 3588888999999999999997643
No 121
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.16 E-value=3.8e-10 Score=105.80 Aligned_cols=152 Identities=23% Similarity=0.288 Sum_probs=92.6
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
...+++|||+|++|+.+|..+.+.+.+++++|+... .|+... ++ +
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~--------~GG~l~-------------------------~g--i 186 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR--------IGGLLR-------------------------YG--I 186 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC--------CCceee-------------------------ec--C
Confidence 346899999999999999999999999999997532 122100 11 0
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNY 260 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~ 260 (312)
+ .+....... ......+...|+++..++....+ +.. +. ....||+||+|||+. |+.
T Consensus 187 p---~~~~~~~~~------------~~~~~~~~~~gv~~~~~~~v~~~-----~~~-~~--~~~~~d~vvlAtGa~~~~~ 243 (471)
T PRK12810 187 P---DFKLEKEVI------------DRRIELMEAEGIEFRTNVEVGKD-----ITA-EE--LLAEYDAVFLGTGAYKPRD 243 (471)
T ss_pred C---cccCCHHHH------------HHHHHHHHhCCcEEEeCCEECCc-----CCH-HH--HHhhCCEEEEecCCCCCCc
Confidence 0 011111100 00112355678888766533111 111 11 234699999999986 777
Q ss_pred CCCCCCCcce-eccccc--------------cCCCCCCCeEEEEcCchhhHHHHHH-hhcCceeeee
Q psy11185 261 PDIPGAKEHC-ISSDDI--------------FSLEKPPGKTLVVGAGYIGKLETWD-SNSGCGNVTI 311 (312)
Q Consensus 261 p~~~g~~~~~-~~~~~~--------------~~~~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V~~ 311 (312)
++++|.+... ++..++ ......+++|+|||+|++|+|+|.. +..++++|++
T Consensus 244 l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~ 310 (471)
T PRK12810 244 LGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQ 310 (471)
T ss_pred CCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 8899875431 221110 0123457899999999999998864 6666667764
No 122
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.15 E-value=5e-10 Score=104.22 Aligned_cols=146 Identities=15% Similarity=0.225 Sum_probs=86.0
Q ss_pred ccccEEEEecCcchHHHHHHHHH--CCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAA--HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW 179 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~--~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 179 (312)
...+++|||+||+|+.+|..|.+ .+.++.++|+... .|+... ++.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~--------pgGlvr-------------------------~gv 71 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT--------PFGLVR-------------------------SGV 71 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC--------CcceEe-------------------------ecc
Confidence 35689999999999999999986 6788999997542 222111 110
Q ss_pred ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC-
Q psy11185 180 EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP- 258 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p- 258 (312)
.+++......... +. ..+...++++...... . ..++.++- ...||+||+|||+.+
T Consensus 72 --------aP~~~~~k~v~~~----~~----~~~~~~~v~~~~nv~v--g---~dvtl~~L---~~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 72 --------APDHPETKNVTNQ----FS----RVATDDRVSFFGNVTL--G---RDVSLSEL---RDLYHVVVLAYGAESD 127 (491)
T ss_pred --------CCCcchhHHHHHH----HH----HHHHHCCeEEEcCEEE--C---ccccHHHH---hhhCCEEEEecCCCCC
Confidence 0111111111111 11 1233456776543211 1 11222332 236999999999875
Q ss_pred CCCCCCCCCcc-eecccccc----------CC---CCCCCeEEEEcCchhhHHHHHHhhc
Q psy11185 259 NYPDIPGAKEH-CISSDDIF----------SL---EKPPGKTLVVGAGYIGKLETWDSNS 304 (312)
Q Consensus 259 ~~p~~~g~~~~-~~~~~~~~----------~~---~~~~~~v~VvG~G~sa~~~a~~l~~ 304 (312)
+.+++||.+.. .++..++. .. ...+++|+|||+|++|+++|..|..
T Consensus 128 ~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~ 187 (491)
T PLN02852 128 RRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLR 187 (491)
T ss_pred CCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHh
Confidence 67889987542 22222221 11 1246789999999999998888765
No 123
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.15 E-value=5.8e-10 Score=103.89 Aligned_cols=145 Identities=17% Similarity=0.250 Sum_probs=93.2
Q ss_pred hhhhhhhHhhhccCCeEEEEEcc-C-CCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeec-----
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRS-V-PLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNV----- 91 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~-~-~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~----- 91 (312)
++|+|+|..|.++|++||+++++ + .++.... ..+.++++||++++++.+.++..+.++.+ .+.+..-
T Consensus 282 ~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~-----~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 356 (449)
T TIGR01316 282 NTAVDSARTALRLGAEVHCLYRRTREDMTARVE-----EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQ 356 (449)
T ss_pred HHHHHHHHHHHHcCCEEEEEeecCcccCCCCHH-----HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCc
Confidence 58999999999999999999984 3 3333322 24567889999999999999876444433 3444310
Q ss_pred -cccc------cCCCccccccEEEEecCcch-HHHHHHH-HHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHH
Q psy11185 92 -AEVR------QDNTHKYDYDLLVLGGGSGG-LAAAKEA-AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161 (312)
Q Consensus 92 -~~~~------~~~~~~~~~d~vivg~G~~g-l~~a~~~-~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~ 161 (312)
..++ .+....+++|.||++.|... ..+...+ .+.+ ...+.+|..++|+.|+||++||++... ...
T Consensus 357 ~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~-----~~v 431 (449)
T TIGR01316 357 IDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA-----ATV 431 (449)
T ss_pred CCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCc-----HHH
Confidence 0010 11113689999999999632 2211111 1222 234777888899999999999965432 344
Q ss_pred HHHHHHHHHHHHH
Q psy11185 162 HQAALLGEAIKDA 174 (312)
Q Consensus 162 ~~a~~~~~~~~~~ 174 (312)
..+..+++....+
T Consensus 432 ~~Ai~~G~~AA~~ 444 (449)
T TIGR01316 432 IRAMGQGKRAAKS 444 (449)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666655544
No 124
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.12 E-value=7.6e-10 Score=103.95 Aligned_cols=151 Identities=22% Similarity=0.316 Sum_probs=92.9
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..+++|||+|++|+.+|..+.+.+.++++++.... .|+.+. ++. +
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~--------~gG~l~-------------------------~gi--p 187 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR--------CGGLLM-------------------------YGI--P 187 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC--------CCceee-------------------------ccC--C
Confidence 35899999999999999999999999999986432 222110 110 0
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p 261 (312)
. ...+...+. .....+...||++..++.... .+.. ++ ....||+||+|||+. |+.|
T Consensus 188 ~---~~~~~~~~~------------~~~~~~~~~Gv~~~~~~~v~~-----~~~~-~~--~~~~~d~VilAtGa~~~~~l 244 (485)
T TIGR01317 188 N---MKLDKAIVD------------RRIDLLSAEGIDFVTNTEIGV-----DISA-DE--LKEQFDAVVLAGGATKPRDL 244 (485)
T ss_pred C---ccCCHHHHH------------HHHHHHHhCCCEEECCCEeCC-----ccCH-HH--HHhhCCEEEEccCCCCCCcC
Confidence 0 111111100 011335667898876653210 1111 11 245699999999987 8889
Q ss_pred CCCCCCcce-ecccc-------------c---cCCCCCCCeEEEEcCchhhHHHH-HHhhcCceeeee
Q psy11185 262 DIPGAKEHC-ISSDD-------------I---FSLEKPPGKTLVVGAGYIGKLET-WDSNSGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~~-~~~~~-------------~---~~~~~~~~~v~VvG~G~sa~~~a-~~l~~~~~~V~~ 311 (312)
+++|.+... ++.-. . ......+++|+|||||++|++++ ..+..+++.|++
T Consensus 245 ~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~v 312 (485)
T TIGR01317 245 PIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQ 312 (485)
T ss_pred CCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence 999875421 11110 0 01123567899999999999864 557777778875
No 125
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.10 E-value=5.6e-10 Score=108.40 Aligned_cols=151 Identities=24% Similarity=0.313 Sum_probs=91.7
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..+++|||+|++|+.+|..+.+.+.+++++|.... .|+... ++. +
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~--------~GG~l~-------------------------~gi--p 237 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ--------AGGMMR-------------------------YGI--P 237 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC--------CCceee-------------------------ecC--C
Confidence 45899999999999999999999999999997542 232110 110 0
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC-CCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p-~~p 261 (312)
. .... ..+..+ ....+...|+++..++... ..+...+. ...||+||+|||+.+ +.+
T Consensus 238 ~---~~~~-~~~~~~-----------~~~~l~~~Gv~i~~~~~v~-----~dv~~~~~---~~~~DaVilAtGa~~~~~~ 294 (652)
T PRK12814 238 R---FRLP-ESVIDA-----------DIAPLRAMGAEFRFNTVFG-----RDITLEEL---QKEFDAVLLAVGAQKASKM 294 (652)
T ss_pred C---CCCC-HHHHHH-----------HHHHHHHcCCEEEeCCccc-----CccCHHHH---HhhcCEEEEEcCCCCCCCC
Confidence 0 0100 111100 1123456688876554321 11222222 234999999999875 567
Q ss_pred CCCCCCcce-ecccccc------CCCCCCCeEEEEcCchhhHHHHHHhhc-Cceeeee
Q psy11185 262 DIPGAKEHC-ISSDDIF------SLEKPPGKTLVVGAGYIGKLETWDSNS-GCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~~-~~~~~~~------~~~~~~~~v~VvG~G~sa~~~a~~l~~-~~~~V~~ 311 (312)
++||.+... ++..++. .....+++|+|||+|++|+++|..+.. ++++|+|
T Consensus 295 ~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtl 352 (652)
T PRK12814 295 GIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTI 352 (652)
T ss_pred CCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 888875432 2222221 123467899999999999998888554 5567876
No 126
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.06 E-value=3.9e-09 Score=92.96 Aligned_cols=141 Identities=17% Similarity=0.122 Sum_probs=90.8
Q ss_pred hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
.+|+|+|..|++.+.+|+++++...++. + ..+.+.|+++ ||++++++.+++++.+. ....+.+.+...+ .
T Consensus 151 ~~~~e~a~~l~~~~~~V~~v~~~~~~~~-~----~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~~~~g---~ 221 (300)
T TIGR01292 151 DSAIEEALYLTRIAKKVTLVHRRDKFRA-E----KILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKNTVTG---E 221 (300)
T ss_pred hHHHHHHHHHHhhcCEEEEEEeCcccCc-C----HHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEecCCC---c
Confidence 4799999999999999999999533332 2 3345667776 99999999999987532 2224444432111 1
Q ss_pred CccccccEEEEecCcch-HHHHHHHHHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 99 THKYDYDLLVLGGGSGG-LAAAKEAAAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g-l~~a~~~~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
..++++|.+|++.|... ......+...+ ...+.+++.++++.|+||++||++... ......+..++.....
T Consensus 222 ~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~ 294 (300)
T TIGR01292 222 EEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTSVPGVFAAGDVRDKG----YRQAVTAAGDGCIAAL 294 (300)
T ss_pred eEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccCCCCEEEeecccCcc----hhhhhhhhhhHHHHHH
Confidence 14689999999999632 22222222222 234667888899999999999966421 1333445555554443
No 127
>PRK12831 putative oxidoreductase; Provisional
Probab=99.05 E-value=1.9e-09 Score=100.66 Aligned_cols=145 Identities=17% Similarity=0.152 Sum_probs=91.1
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee------
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN------ 90 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~------ 90 (312)
++|+|+|..|.++|.+|||++| + ..++....++ +.++++||++++++.+.++..+.++.+ .+.+..
T Consensus 291 ~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 365 (464)
T PRK12831 291 NVAMDAARTALRLGAEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEP 365 (464)
T ss_pred HHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCc
Confidence 4799999999999999999998 4 3455544332 345678999999999999876444433 233320
Q ss_pred ccccc------cCCCccccccEEEEecCcchH-HHHHH--HHHCC-CcEEEEecc-CCCCCCcccccCCcccccccchhh
Q psy11185 91 VAEVR------QDNTHKYDYDLLVLGGGSGGL-AAAKE--AAAHG-RKVIVLDYV-IPSPQGTTWGLGGTCVNVGCIPKK 159 (312)
Q Consensus 91 ~~~~~------~~~~~~~~~d~vivg~G~~gl-~~a~~--~~~~~-~~~~~ve~~-~~~~~~~v~a~Gd~~~~~~~~~~~ 159 (312)
...++ .+....+++|.||++.|...- .+... ..+.+ ...+.+|.. ++|+.|+||++||+.... .
T Consensus 366 d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~-----~ 440 (464)
T PRK12831 366 DASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA-----A 440 (464)
T ss_pred CCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc-----h
Confidence 00011 111135899999999996432 22111 01112 234667766 899999999999965432 2
Q ss_pred HHHHHHHHHHHHHHH
Q psy11185 160 LMHQAALLGEAIKDA 174 (312)
Q Consensus 160 ~~~~a~~~~~~~~~~ 174 (312)
....+..+++....+
T Consensus 441 ~v~~Ai~~G~~AA~~ 455 (464)
T PRK12831 441 TVILAMGAGKKAAKA 455 (464)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 128
>PRK13984 putative oxidoreductase; Provisional
Probab=99.05 E-value=1.2e-09 Score=105.59 Aligned_cols=145 Identities=21% Similarity=0.255 Sum_probs=87.7
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..+++|||+|++|+.+|..+.+.|.+++++|.... .|+... ++ ++
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~--------~gG~~~-------------------------~~--i~ 327 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK--------PGGVMR-------------------------YG--IP 327 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC--------CCceEe-------------------------ec--CC
Confidence 45799999999999999999999999999986542 111100 00 00
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p 261 (312)
. .......+. .....++..|+++..++....+ +...+ ....||+||+|||+. |+.+
T Consensus 328 ~---~~~~~~~~~------------~~~~~~~~~gv~~~~~~~v~~~-----~~~~~---~~~~yD~vilAtGa~~~r~l 384 (604)
T PRK13984 328 S---YRLPDEALD------------KDIAFIEALGVKIHLNTRVGKD-----IPLEE---LREKHDAVFLSTGFTLGRST 384 (604)
T ss_pred c---ccCCHHHHH------------HHHHHHHHCCcEEECCCEeCCc-----CCHHH---HHhcCCEEEEEcCcCCCccC
Confidence 0 000100000 0113455678887655432111 11111 235699999999976 6788
Q ss_pred CCCCCCcc-eeccccccC-----------CCCCCCeEEEEcCchhhHHHHHHhhcC
Q psy11185 262 DIPGAKEH-CISSDDIFS-----------LEKPPGKTLVVGAGYIGKLETWDSNSG 305 (312)
Q Consensus 262 ~~~g~~~~-~~~~~~~~~-----------~~~~~~~v~VvG~G~sa~~~a~~l~~~ 305 (312)
+++|.+.. .++..++.. ....+++|+|||||.+|+|.|..+...
T Consensus 385 ~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~ 440 (604)
T PRK13984 385 RIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARL 440 (604)
T ss_pred CCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhc
Confidence 89997542 222211111 112468999999999999999887654
No 129
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.04 E-value=2.7e-09 Score=101.24 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=86.0
Q ss_pred hhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
++|+|+|..|+.++.+|||+++...++. + +.+.+.+.+ .||++++++.+.+++.+++....+.+.+...+..
T Consensus 361 ~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-~----~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~-- 433 (517)
T PRK15317 361 NSGVEAAIDLAGIVKHVTVLEFAPELKA-D----QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEE-- 433 (517)
T ss_pred HHHHHHHHHHHhcCCEEEEEEECccccc-c----HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcE--
Confidence 4899999999999999999999533332 2 344556665 6999999999999986432222456654322211
Q ss_pred CccccccEEEEecCcch-HHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCcccc
Q psy11185 99 THKYDYDLLVLGGGSGG-LAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCVN 152 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~g-l~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~ 152 (312)
.++++|.++++.|... ..........+. ..+.+|+.++|+.|+|||+||++..
T Consensus 434 -~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~ 488 (517)
T PRK15317 434 -HHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATSVPGVFAAGDCTTV 488 (517)
T ss_pred -EEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCCCCCEEECccccCC
Confidence 4689999999999633 222222222222 3477788889999999999997554
No 130
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.04 E-value=8.3e-10 Score=103.84 Aligned_cols=100 Identities=22% Similarity=0.301 Sum_probs=80.8
Q ss_pred HHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcc----eeccccccCC---CCC
Q psy11185 211 VMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH----CISSDDIFSL---EKP 282 (312)
Q Consensus 211 ~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~----~~~~~~~~~~---~~~ 282 (312)
.+..+++|+++.+. +..++...-.+.+++| .++.||+||+||||+|.+|++||.+.+ ..+.++...+ ...
T Consensus 67 dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g--~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~ 144 (793)
T COG1251 67 DWYEENGITLYTGEKVIQIDRANKVVTTDAG--RTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARN 144 (793)
T ss_pred hhHHHcCcEEEcCCeeEEeccCcceEEccCC--cEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhc
Confidence 34578899998776 7788888888999999 899999999999999999999999765 2344444333 233
Q ss_pred CCeEEEEcCchhhHHHHHHhhcCceeeeeC
Q psy11185 283 PGKTLVVGAGYIGKLETWDSNSGCGNVTIH 312 (312)
Q Consensus 283 ~~~v~VvG~G~sa~~~a~~l~~~~~~V~~~ 312 (312)
.++.+|||||..|.|+|..|...+-+++|+
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vv 174 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVV 174 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEE
Confidence 446899999999999999999998888764
No 131
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.02 E-value=1.9e-09 Score=99.12 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=97.1
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCCccch-HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeE--EEEeeccccc
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPLRGFD-QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLK--VQYKNVAEVR 95 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~-~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~--v~~~~~~~~~ 95 (312)
.+|+|+|..|++.|++||++|+ +++++.+. +++.+.+.+.|++.||++++++.+.+++...+.... +...++
T Consensus 146 ~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~---- 221 (415)
T COG0446 146 PIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG---- 221 (415)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC----
Confidence 5899999999999999999999 68888887 999999999999999999999999999864332111 233333
Q ss_pred cCCCccccccEEEEecCcch-HHHHHHHH---HCCCcEEEEeccCCCC-CCcccccCCccccc
Q psy11185 96 QDNTHKYDYDLLVLGGGSGG-LAAAKEAA---AHGRKVIVLDYVIPSP-QGTTWGLGGTCVNV 153 (312)
Q Consensus 96 ~~~~~~~~~d~vivg~G~~g-l~~a~~~~---~~~~~~~~ve~~~~~~-~~~v~a~Gd~~~~~ 153 (312)
..+++|.++++.|..+ ..++.... ......+.++..++++ .+++|++||++...
T Consensus 222 ----~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~ 280 (415)
T COG0446 222 ----EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP 280 (415)
T ss_pred ----cEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeee
Confidence 5688999999999644 44444332 2222347788888887 99999999965443
No 132
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.4e-09 Score=92.97 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=89.6
Q ss_pred hhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
-+.++|.|.+|++.+.+|||++|+..++. .+.+ .+.+++. +|++++++.+.++..+. .-.+++++.. +
T Consensus 152 G~sAve~Al~L~~~a~~Vtlv~r~~~~ra-~~~~----~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~~-~--- 220 (305)
T COG0492 152 GDSAVEEALYLSKIAKKVTLVHRRDEFRA-EEIL----VERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNVK-G--- 220 (305)
T ss_pred CHHHHHHHHHHHHhcCeEEEEecCcccCc-CHHH----HHHHHhcCCeEEEeCCceeEEecCc--cceEEEEecC-C---
Confidence 35899999999999999999999766676 4343 4444444 89999999999997543 2367777642 1
Q ss_pred CCccccccEEEEecCcchH-HHHHHHHHC-CCcEEEEeccCCCCCCcccccCCcccccc
Q psy11185 98 NTHKYDYDLLVLGGGSGGL-AAAKEAAAH-GRKVIVLDYVIPSPQGTTWGLGGTCVNVG 154 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~~gl-~~a~~~~~~-~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~ 154 (312)
....+.+|-+++..|.... .+...+... ....++++..++|+.|+|||+||++....
T Consensus 221 ~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~ 279 (305)
T COG0492 221 EEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG 279 (305)
T ss_pred ceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc
Confidence 1157789999999996332 322222222 23457788889999999999999776543
No 133
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.01 E-value=8.2e-10 Score=91.46 Aligned_cols=53 Identities=30% Similarity=0.617 Sum_probs=40.3
Q ss_pred CCCeEEEEcCeEEEccCCCCCCCCCCCCCc--c---eeccccccCCCCCCCeEEEEcC
Q psy11185 239 NGEKKTLTAENILIATGGRPNYPDIPGAKE--H---CISSDDIFSLEKPPGKTLVVGA 291 (312)
Q Consensus 239 ~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~--~---~~~~~~~~~~~~~~~~v~VvG~ 291 (312)
.++..++.||+||+|||+.|+.|.+||.+. + ..++..+......+++|+|||.
T Consensus 103 ~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~ 160 (201)
T PF07992_consen 103 TGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGT 160 (201)
T ss_dssp TTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEEST
T ss_pred cCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccc
Confidence 334589999999999999999999998731 1 3455666666566779999993
No 134
>PRK09897 hypothetical protein; Provisional
Probab=99.00 E-value=3.4e-08 Score=93.07 Aligned_cols=195 Identities=12% Similarity=0.026 Sum_probs=100.0
Q ss_pred cEEEEecCcchHHHHHHHHHCCC--cEEEEeccCCCCCCcccccCCccc--ccc----cchhhHHHHHHH-HHHHHHHHH
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGR--KVIVLDYVIPSPQGTTWGLGGTCV--NVG----CIPKKLMHQAAL-LGEAIKDAV 175 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~--~~~~ve~~~~~~~~~v~a~Gd~~~--~~~----~~~~~~~~~a~~-~~~~~~~~~ 175 (312)
+++|||+|++|+.++..|.+.+. ++.++|+......+-.|...+... ..+ ..|....+.... .........
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~~ 82 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQ 82 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHHH
Confidence 68999999999999999987543 689999866555555566543211 111 011100000000 000000011
Q ss_pred HcCCccCC-ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCC--ceEEec-eeEEe--eCCeEEEEecCCCeEEEEcCe
Q psy11185 176 AYGWEIPN-VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK--VDYLNA-LGKFI--DQHSVEATMKNGEKKTLTAEN 249 (312)
Q Consensus 176 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--V~~~~~-~~~~~--~~~~~~v~~~~G~~~~i~ad~ 249 (312)
.++..... ....++....+..|+....+.+ ...+...| +.+... .+..+ +...+.+++.++ ...+.+|.
T Consensus 83 ~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l----~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~g-g~~i~aD~ 157 (534)
T PRK09897 83 RYGVKKETLHDRQFLPRILLGEYFRDQFLRL----VDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQD-LPSETFDL 157 (534)
T ss_pred hcCCcceeecCCccCCeecchHHHHHHHHHH----HHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCC-CeEEEcCE
Confidence 11211100 0012334444555554443332 23344454 555433 33333 345577776443 15789999
Q ss_pred EEEccCCCCCCCCCCCCCcceeccccccCCCC-CCCeEEEEcCchhhHHHHHHhhcC
Q psy11185 250 ILIATGGRPNYPDIPGAKEHCISSDDIFSLEK-PPGKTLVVGAGYIGKLETWDSNSG 305 (312)
Q Consensus 250 vVlAtG~~p~~p~~~g~~~~~~~~~~~~~~~~-~~~~v~VvG~G~sa~~~a~~l~~~ 305 (312)
||+|||..+..+ ..+...|............ .+.+|+|+|.|.|+++++..|...
T Consensus 158 VVLAtGh~~p~~-~~~~~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 158 AVIATGHVWPDE-EEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred EEECCCCCCCCC-ChhhccccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 999999643211 1222333222222222212 246799999999999999887744
No 135
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.98 E-value=6.8e-09 Score=97.10 Aligned_cols=145 Identities=16% Similarity=0.166 Sum_probs=91.5
Q ss_pred hhhhhhhHhhhccCC-eEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeec-----
Q psy11185 20 DSGLECAGFLNGLGF-NATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNV----- 91 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~-~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~----- 91 (312)
++|+|+|..|.++|. +||++++ + ..++....+ .+.++++||++++++.+.++..+.++...+.+...
T Consensus 283 ~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~-----~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~ 357 (457)
T PRK11749 283 NTAMDAARTAKRLGAESVTIVYRRGREEMPASEEE-----VEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEP 357 (457)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHH-----HHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCc
Confidence 579999999999998 8999998 4 356655433 45678899999999999998764332112333210
Q ss_pred -cccc-----cCCCccccccEEEEecCcchH-HHHHH--HHHCC-CcEEEEec-cCCCCCCcccccCCcccccccchhhH
Q psy11185 92 -AEVR-----QDNTHKYDYDLLVLGGGSGGL-AAAKE--AAAHG-RKVIVLDY-VIPSPQGTTWGLGGTCVNVGCIPKKL 160 (312)
Q Consensus 92 -~~~~-----~~~~~~~~~d~vivg~G~~gl-~~a~~--~~~~~-~~~~~ve~-~~~~~~~~v~a~Gd~~~~~~~~~~~~ 160 (312)
..++ +....++++|.||++.|...- .+... ....+ ...+.++. .++|+.|+||++||+... ...
T Consensus 358 ~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~-----~~~ 432 (457)
T PRK11749 358 DASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG-----AAT 432 (457)
T ss_pred CCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC-----chH
Confidence 0000 111246899999999996332 21111 01111 12356665 788999999999996532 134
Q ss_pred HHHHHHHHHHHHHH
Q psy11185 161 MHQAALLGEAIKDA 174 (312)
Q Consensus 161 ~~~a~~~~~~~~~~ 174 (312)
...+..++.....+
T Consensus 433 ~~~A~~~G~~aA~~ 446 (457)
T PRK11749 433 VVWAVGDGKDAAEA 446 (457)
T ss_pred HHHHHHHHHHHHHH
Confidence 44566666655544
No 136
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.96 E-value=7.3e-09 Score=100.96 Aligned_cols=151 Identities=18% Similarity=0.282 Sum_probs=89.2
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..+++|||+||+|+.+|..|.+.|.+++++|+... .|+... ++. +
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~--------~GG~l~-------------------------~gi--p 371 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE--------IGGLLT-------------------------FGI--P 371 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC--------CCceee-------------------------ecC--C
Confidence 46899999999999999999999999999987432 232110 110 0
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p 261 (312)
....+.+.+. .....+...|+++..++... .. +...+ ....||+||+|||+. ++.+
T Consensus 372 ---~~~l~~~~~~------------~~~~~~~~~Gv~~~~~~~v~---~~--i~~~~---~~~~~DavilAtGa~~~~~l 428 (654)
T PRK12769 372 ---AFKLDKSLLA------------RRREIFSAMGIEFELNCEVG---KD--ISLES---LLEDYDAVFVGVGTYRSMKA 428 (654)
T ss_pred ---CccCCHHHHH------------HHHHHHHHCCeEEECCCEeC---Cc--CCHHH---HHhcCCEEEEeCCCCCCCCC
Confidence 0111111110 01133456688886554221 01 11111 123599999999975 4456
Q ss_pred CCCCCCccee-cc--------ccccC---------CCCCCCeEEEEcCchhhHHHHHH-hhcCceeeee
Q psy11185 262 DIPGAKEHCI-SS--------DDIFS---------LEKPPGKTLVVGAGYIGKLETWD-SNSGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~~~-~~--------~~~~~---------~~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V~~ 311 (312)
.++|.+.... +. +.... ....+++|+|||||++|++++.. +..++++|++
T Consensus 429 ~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~ 497 (654)
T PRK12769 429 GLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTC 497 (654)
T ss_pred CCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 7777654211 10 11111 11346789999999999988764 6677777876
No 137
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.92 E-value=1.6e-08 Score=94.74 Aligned_cols=151 Identities=19% Similarity=0.303 Sum_probs=89.6
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..+++|||+|++|+.+|..+.+.+.+++++|.... .|+... ++. +
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~--------~gG~l~-------------------------~gi--p 185 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE--------IGGLLT-------------------------FGI--P 185 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC--------CCceee-------------------------ecC--c
Confidence 46899999999999999999999999999886532 222110 110 0
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCC-CC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN-YP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~-~p 261 (312)
....+.+.+ ......+...|+++..++.. .. .+...+ ....||+||+|||+.+. .+
T Consensus 186 ---~~~~~~~~~------------~~~~~~~~~~Gv~~~~~~~v--~~---~~~~~~---~~~~~D~vilAtGa~~~~~~ 242 (467)
T TIGR01318 186 ---SFKLDKAVL------------SRRREIFTAMGIEFHLNCEV--GR---DISLDD---LLEDYDAVFLGVGTYRSMRG 242 (467)
T ss_pred ---cccCCHHHH------------HHHHHHHHHCCCEEECCCEe--CC---ccCHHH---HHhcCCEEEEEeCCCCCCcC
Confidence 011111100 01113456678888655422 11 111111 12469999999998764 46
Q ss_pred CCCCCCcce-ecc--------cccc------CC---CCCCCeEEEEcCchhhHHHHHH-hhcCceeeee
Q psy11185 262 DIPGAKEHC-ISS--------DDIF------SL---EKPPGKTLVVGAGYIGKLETWD-SNSGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~~-~~~--------~~~~------~~---~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V~~ 311 (312)
+++|.+... ++. .... .. ...+++++|||+|++|++++.. +..++++|||
T Consensus 243 ~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtv 311 (467)
T TIGR01318 243 GLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTC 311 (467)
T ss_pred CCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 788875431 111 0010 11 1346789999999999988776 5555567886
No 138
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.89 E-value=5.6e-09 Score=102.73 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=31.0
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
...++|||+||+|+.+|..|.+.|.+++++|...
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 5689999999999999999999999999999753
No 139
>KOG2495|consensus
Probab=98.89 E-value=5.8e-09 Score=92.44 Aligned_cols=157 Identities=21% Similarity=0.270 Sum_probs=93.8
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
-.-.+||+|+|.++.++...+-....+++++.+..- | . |.+.+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny------F------l-------------------------FTPLL 96 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY------F------L-------------------------FTPLL 96 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccc------e------E-------------------------Eeecc
Confidence 356799999999999988887666678888874210 0 0 11111
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC--CeEEEEe--cCC--CeEEEEcCeEEEccC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ--HSVEATM--KNG--EKKTLTAENILIATG 255 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~--~~~~v~~--~~G--~~~~i~ad~vVlAtG 255 (312)
|......++...+.+-++.. ......++.++++.-..+++ ..+.++. .++ ....+.||+||+|+|
T Consensus 97 pS~~vGTve~rSIvEPIr~i---------~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~G 167 (491)
T KOG2495|consen 97 PSTTVGTVELRSIVEPIRAI---------ARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVG 167 (491)
T ss_pred CCccccceeehhhhhhHHHH---------hhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEecc
Confidence 11111223333333332222 11223367787776555554 4455443 222 236799999999999
Q ss_pred CCCCCCCCCCCCcceec------cccc-------------cCCC-CCCC---eEEEEcCchhhHHHHHHhhc
Q psy11185 256 GRPNYPDIPGAKEHCIS------SDDI-------------FSLE-KPPG---KTLVVGAGYIGKLETWDSNS 304 (312)
Q Consensus 256 ~~p~~p~~~g~~~~~~~------~~~~-------------~~~~-~~~~---~v~VvG~G~sa~~~a~~l~~ 304 (312)
+.+..+.+||..++++- ...+ ..+. ...+ +++|||||++|+|.|.+|..
T Consensus 168 A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~D 239 (491)
T KOG2495|consen 168 AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELAD 239 (491)
T ss_pred CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHH
Confidence 99999999999775332 1111 1111 0122 58999999999999988764
No 140
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.86 E-value=5e-08 Score=93.30 Aligned_cols=123 Identities=13% Similarity=0.003 Sum_probs=78.3
Q ss_pred hhhhhhhHhhhccCCeEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDN 98 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~ 98 (312)
++|+|+|.+|+++|++||+++++ ++.. .+.+ ..+.+++.||++++++.++++..+ +....+.+.+...+..
T Consensus 153 ~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~---~~~~~~~~gV~i~~~~~V~~i~~~-~~v~~v~~~~~~~G~~-- 224 (555)
T TIGR03143 153 FAAAEEAVFLTRYASKVTVIVREPDFTC--AKLI---AEKVKNHPKIEVKFNTELKEATGD-DGLRYAKFVNNVTGEI-- 224 (555)
T ss_pred HHHHHHHHHHHccCCEEEEEEeCCcccc--CHHH---HHHHHhCCCcEEEeCCEEEEEEcC-CcEEEEEEEECCCCCE--
Confidence 47999999999999999999994 4322 2222 233345579999999999998742 2211233332111100
Q ss_pred Ccc--ccccE----EEEecCcc-hHHHHHHHHHCCC-cEEEEeccCCCCCCcccccCCccc
Q psy11185 99 THK--YDYDL----LVLGGGSG-GLAAAKEAAAHGR-KVIVLDYVIPSPQGTTWGLGGTCV 151 (312)
Q Consensus 99 ~~~--~~~d~----vivg~G~~-gl~~a~~~~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~ 151 (312)
.. +++|. ||++.|.. ...+.....+.+. ..+.+|..++|+.|+|||+||++.
T Consensus 225 -~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~ 284 (555)
T TIGR03143 225 -TEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRP 284 (555)
T ss_pred -EEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCccccCCCCEEEceeccC
Confidence 12 23565 99999952 2223332233332 357788889999999999999753
No 141
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.86 E-value=1.5e-08 Score=91.63 Aligned_cols=128 Identities=18% Similarity=0.122 Sum_probs=81.0
Q ss_pred hhhhhhhHhhhccCCe-EEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccc-----
Q psy11185 20 DSGLECAGFLNGLGFN-ATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAE----- 93 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~-vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~----- 93 (312)
++|+|+|..|.++|.+ |||++++..... .......+.|+++||++++++.+.+++.. +....+.+.....
T Consensus 182 ~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~---~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~~~v~~~~~~~~~~~~ 257 (352)
T PRK12770 182 LTAVDAALEAVLLGAEKVYLAYRRTINEA---PAGKYEIERLIARGVEFLELVTPVRIIGE-GRVEGVELAKMRLGEPDE 257 (352)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeecchhhC---CCCHHHHHHHHHcCCEEeeccCceeeecC-CcEeEEEEEEEEecCcCc
Confidence 4799999999999997 999998432211 11133456688899999999999998743 2212344322100
Q ss_pred -------cccCCCccccccEEEEecCcch-HHHHHH-H-HHCCC-cEEEEeccCCCCCCcccccCCccc
Q psy11185 94 -------VRQDNTHKYDYDLLVLGGGSGG-LAAAKE-A-AAHGR-KVIVLDYVIPSPQGTTWGLGGTCV 151 (312)
Q Consensus 94 -------~~~~~~~~~~~d~vivg~G~~g-l~~a~~-~-~~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~ 151 (312)
........+++|.+|++.|... ..+... + ...+. ..+.++...+++.++||++||++.
T Consensus 258 ~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~ 326 (352)
T PRK12770 258 SGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVT 326 (352)
T ss_pred ccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEccccc
Confidence 0000124689999999999532 222211 0 11111 246778888899999999999654
No 142
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.82 E-value=3.4e-08 Score=97.81 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=92.1
Q ss_pred hhhhhhhHhhhccCCe-EEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee---c-
Q psy11185 20 DSGLECAGFLNGLGFN-ATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN---V- 91 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~-vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~---~- 91 (312)
++|+|+|..+.++|.+ ||++++ + ..++....++ +.++++||++++++.+.++..+.++.+ .+.+.. +
T Consensus 580 ~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~ 654 (752)
T PRK12778 580 NTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGE 654 (752)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecC
Confidence 5899999999999997 999998 4 3466544332 456788999999999999876444433 233321 0
Q ss_pred --cccc------cCCCccccccEEEEecCcchH-HHHHHH--HHCC-CcEEEEeccCCCCCCcccccCCcccccccchhh
Q psy11185 92 --AEVR------QDNTHKYDYDLLVLGGGSGGL-AAAKEA--AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK 159 (312)
Q Consensus 92 --~~~~------~~~~~~~~~d~vivg~G~~gl-~~a~~~--~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~ 159 (312)
..++ +....++++|.||++.|...- .+...+ ...+ ...+.+|..++|+.|+|||+||+.... .
T Consensus 655 ~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~-----~ 729 (752)
T PRK12778 655 PDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGG-----A 729 (752)
T ss_pred cCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCc-----H
Confidence 0010 011135899999999996322 111111 1112 234677777799999999999965432 2
Q ss_pred HHHHHHHHHHHHHHH
Q psy11185 160 LMHQAALLGEAIKDA 174 (312)
Q Consensus 160 ~~~~a~~~~~~~~~~ 174 (312)
....|..+++....+
T Consensus 730 ~vv~Av~~G~~AA~~ 744 (752)
T PRK12778 730 TVILAMGDGKRAAAA 744 (752)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666655544
No 143
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.82 E-value=4.5e-08 Score=95.12 Aligned_cols=151 Identities=20% Similarity=0.261 Sum_probs=91.0
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..+++|||+|++|+.+|..|.+.|.+++++|.... .|+... ++. +
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~--------~GG~l~-------------------------~gi--p 354 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE--------IGGMLT-------------------------FGI--P 354 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC--------CCCeee-------------------------ccC--C
Confidence 46899999999999999999999999999987542 233110 111 0
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCC-CCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGR-PNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~-p~~p 261 (312)
+++++...+. .....+...|+++..++... . .+...+ ....+|+||+|||+. ++.+
T Consensus 355 ---~~~l~~~~~~------------~~~~~~~~~Gv~~~~~~~v~---~--~~~~~~---l~~~~DaV~latGa~~~~~~ 411 (639)
T PRK12809 355 ---PFKLDKTVLS------------QRREIFTAMGIDFHLNCEIG---R--DITFSD---LTSEYDAVFIGVGTYGMMRA 411 (639)
T ss_pred ---cccCCHHHHH------------HHHHHHHHCCeEEEcCCccC---C--cCCHHH---HHhcCCEEEEeCCCCCCCCC
Confidence 1122211111 01133556788886654211 1 111111 124589999999976 4557
Q ss_pred CCCCCCcce-ec--------cccccC---------CCCCCCeEEEEcCchhhHHHHHH-hhcCceeeee
Q psy11185 262 DIPGAKEHC-IS--------SDDIFS---------LEKPPGKTLVVGAGYIGKLETWD-SNSGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~~-~~--------~~~~~~---------~~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V~~ 311 (312)
+++|.+... ++ ..+... ....+++|+|||+|.+|++.+.. +..++++||+
T Consensus 412 ~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~ 480 (639)
T PRK12809 412 DLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTC 480 (639)
T ss_pred CCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 788865421 11 011111 11246789999999999987765 6677778886
No 144
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.78 E-value=8.3e-09 Score=94.31 Aligned_cols=144 Identities=26% Similarity=0.273 Sum_probs=68.1
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCccccc-CCcccccc--cch-----------hhHH--HHHHHH
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGL-GGTCVNVG--CIP-----------KKLM--HQAALL 167 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~-Gd~~~~~~--~~~-----------~~~~--~~a~~~ 167 (312)
||++|||+|++|+.+|..+.+.+.+++++|++.+.... +.+. ++.|+..+ ..+ .... ......
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkK-il~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKK-ILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HH-HHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccc-eeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCH
Confidence 69999999999999999999999999999987655322 2233 24454332 100 0000 111111
Q ss_pred HHHHHHHHHcCCccC--CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe--eCCe-EEEEecCCC
Q psy11185 168 GEAIKDAVAYGWEIP--NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQHS-VEATMKNGE 241 (312)
Q Consensus 168 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~~~-~~v~~~~G~ 241 (312)
...+......|.... .....++.-+ .+......+...+.+.+|++...+ +..+ +... +.++++++
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s~--------~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~- 150 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEEDGRVFPKSD--------KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG- 150 (409)
T ss_dssp HHHHHHHHHTT--EEE-STTEEEETT----------HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT-
T ss_pred HHHHHHHHhcCCeEEEcCCCEECCCCC--------cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc-
Confidence 112222233343221 1001111110 112233344566778899997665 4433 2333 77877555
Q ss_pred eEEEEcCeEEEccCCCC
Q psy11185 242 KKTLTAENILIATGGRP 258 (312)
Q Consensus 242 ~~~i~ad~vVlAtG~~p 258 (312)
..+.+|.||+|||+.+
T Consensus 151 -~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 151 -GEYEADAVILATGGKS 166 (409)
T ss_dssp -EEEEESEEEE----SS
T ss_pred -ccccCCEEEEecCCCC
Confidence 7999999999999654
No 145
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.77 E-value=3e-08 Score=92.05 Aligned_cols=96 Identities=17% Similarity=0.318 Sum_probs=66.7
Q ss_pred hcCCceEEe-ceeEEee--CCeEEEEecC-CCeEEEE--cCeEEEccCCCCCCCCCCCCC-cceeccccccC---C----
Q psy11185 214 RDKKVDYLN-ALGKFID--QHSVEATMKN-GEKKTLT--AENILIATGGRPNYPDIPGAK-EHCISSDDIFS---L---- 279 (312)
Q Consensus 214 ~~~gV~~~~-~~~~~~~--~~~~~v~~~~-G~~~~i~--ad~vVlAtG~~p~~p~~~g~~-~~~~~~~~~~~---~---- 279 (312)
...++++.. ..+..++ .+.+.+...+ + .++. ||+||+|||+.|+.|+++|.+ ...++..+... +
T Consensus 55 ~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~--~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l 132 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDERQTVVVRNNKTN--ETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYI 132 (427)
T ss_pred HhcCCeEEecCEEEEEECCCCEEEEEECCCC--CEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHH
Confidence 566888753 4455554 3445554432 3 3566 999999999999999999975 22333222211 1
Q ss_pred -CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 280 -EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 280 -~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
...+++|+|||+|.+|+|.|..|...+.+|++
T Consensus 133 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl 165 (427)
T TIGR03385 133 DKNKVENVVIIGGGYIGIEMAEALRERGKNVTL 165 (427)
T ss_pred hhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 13568999999999999999999888878876
No 146
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.77 E-value=8.8e-08 Score=89.72 Aligned_cols=145 Identities=18% Similarity=0.244 Sum_probs=90.6
Q ss_pred hhhhhhhHhhhccCC-eEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee---c-
Q psy11185 20 DSGLECAGFLNGLGF-NATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN---V- 91 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~-~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~---~- 91 (312)
++|+|+|..+.++|. +|||++| + ..++..+.++ +.++++||++++++.+.++..+.++.+ .+++.. +
T Consensus 292 ~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~ 366 (467)
T TIGR01318 292 DTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGE 366 (467)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecc
Confidence 578999999999995 7999998 4 3567666543 456778999999999999875444433 233321 0
Q ss_pred --cccc------cCCCccccccEEEEecCcchH--H-HHHHHHHCCC-cEEEEe----ccCCCCCCcccccCCccccccc
Q psy11185 92 --AEVR------QDNTHKYDYDLLVLGGGSGGL--A-AAKEAAAHGR-KVIVLD----YVIPSPQGTTWGLGGTCVNVGC 155 (312)
Q Consensus 92 --~~~~------~~~~~~~~~d~vivg~G~~gl--~-~a~~~~~~~~-~~~~ve----~~~~~~~~~v~a~Gd~~~~~~~ 155 (312)
..++ ++....+++|.||++.|...- . +.....+.+. ..+.++ ..++|+.++||++||++...
T Consensus 367 ~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~-- 444 (467)
T TIGR01318 367 PDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGA-- 444 (467)
T ss_pred cCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCc--
Confidence 0010 011246899999999995321 1 1111112222 236666 46789999999999965432
Q ss_pred chhhHHHHHHHHHHHHHHH
Q psy11185 156 IPKKLMHQAALLGEAIKDA 174 (312)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~ 174 (312)
.....+..+++....+
T Consensus 445 ---~~~~~Ai~~G~~aA~~ 460 (467)
T TIGR01318 445 ---DLVVTAVAEGRQAAQG 460 (467)
T ss_pred ---cHHHHHHHHHHHHHHH
Confidence 2334455555555443
No 147
>KOG0404|consensus
Probab=98.76 E-value=2.2e-08 Score=81.46 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=87.1
Q ss_pred hhhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 18 KVDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 18 ~~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
+-+.+||.|.+|.+.+.+|+|++|++.++. +..+++ +.++..+|++++|+.+.+...++...-.+.+++-+++..
T Consensus 165 GGDsA~EEA~fLtkyaskVyii~Rrd~fRA-s~~Mq~---ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~- 239 (322)
T KOG0404|consen 165 GGDSAMEEALFLTKYASKVYIIHRRDHFRA-SKIMQQ---RAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEE- 239 (322)
T ss_pred CcHHHHHHHHHHHhhccEEEEEEEhhhhhH-HHHHHH---HHhcCCCeEEEechhhhhhccCcccccceEEEecccCcc-
Confidence 457899999999999999999999766665 334433 345567899999998887764422112567776655433
Q ss_pred CCccccccEEEEecCcchHH-HHHHHHHCCCc--EEEEeccCCCCCCcccccCCccc
Q psy11185 98 NTHKYDYDLLVLGGGSGGLA-AAKEAAAHGRK--VIVLDYVIPSPQGTTWGLGGTCV 151 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~~gl~-~a~~~~~~~~~--~~~ve~~~~~~~~~v~a~Gd~~~ 151 (312)
..++.+-++.|.|.+.-. +-..-.+.+.+ +++.+....|+.|++||+||.+-
T Consensus 240 --~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 240 --TDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred --cccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccch
Confidence 678999999999964322 11112233333 34444566899999999999653
No 148
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.75 E-value=7.7e-08 Score=93.63 Aligned_cols=144 Identities=15% Similarity=0.235 Sum_probs=88.0
Q ss_pred hhhhhhhHhhhccCC-eEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEE---Eeecc-
Q psy11185 20 DSGLECAGFLNGLGF-NATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQ---YKNVA- 92 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~-~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~---~~~~~- 92 (312)
++|+|+|..+.++|. +|||+++ + ..|+..+.++.+ ..++||+|++++.+.++...++. +.+. +..+.
T Consensus 333 ~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~-----a~~eGV~i~~~~~~~~i~~~~~~-~~v~~~~~~~~~~ 406 (652)
T PRK12814 333 NTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEE-----ALAEGVSLRELAAPVSIERSEGG-LELTAIKMQQGEP 406 (652)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHH-----HHHcCCcEEeccCcEEEEecCCe-EEEEEEEEEeccc
Confidence 479999999999996 6999998 4 467777655432 23579999999999998754332 2222 22211
Q ss_pred --ccc------cCCCccccccEEEEecCcc-hHHHHHHH-HHCCC-cEEEEe-ccCCCCCCcccccCCcccccccchhhH
Q psy11185 93 --EVR------QDNTHKYDYDLLVLGGGSG-GLAAAKEA-AAHGR-KVIVLD-YVIPSPQGTTWGLGGTCVNVGCIPKKL 160 (312)
Q Consensus 93 --~~~------~~~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~~-~~~~ve-~~~~~~~~~v~a~Gd~~~~~~~~~~~~ 160 (312)
.++ +.....+++|.||++.|.. ...+.... ...+. ..+.+| ..++|+.++|||+||+.... ..
T Consensus 407 d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~-----~~ 481 (652)
T PRK12814 407 DESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGA-----DI 481 (652)
T ss_pred CCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCc-----hH
Confidence 000 0111358999999999963 22211111 11121 235555 46889999999999965432 23
Q ss_pred HHHHHHHHHHHHHH
Q psy11185 161 MHQAALLGEAIKDA 174 (312)
Q Consensus 161 ~~~a~~~~~~~~~~ 174 (312)
...+..+++....+
T Consensus 482 v~~Ai~~G~~AA~~ 495 (652)
T PRK12814 482 AINAVEQGKRAAHA 495 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554443
No 149
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.70 E-value=1.4e-07 Score=91.97 Aligned_cols=145 Identities=15% Similarity=0.220 Sum_probs=90.7
Q ss_pred hhhhhhhHhhhccCC-eEEEEEc-cC-CCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee---c-
Q psy11185 20 DSGLECAGFLNGLGF-NATVMIR-SV-PLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN---V- 91 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~-~vtl~~~-~~-~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~---~- 91 (312)
++|+|+|..+.++|. +||++++ ++ .++..+.+ .+.++++||++++++.+.++..+.++.+ .|.+.. +
T Consensus 478 ~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~ 552 (654)
T PRK12769 478 DTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGE 552 (654)
T ss_pred HHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecC
Confidence 589999999999996 7999998 43 46665544 3557889999999999999875444433 333321 0
Q ss_pred --cccc------cCCCccccccEEEEecCcchH--HHHHH-HHHCCC-cEEEEec----cCCCCCCcccccCCccccccc
Q psy11185 92 --AEVR------QDNTHKYDYDLLVLGGGSGGL--AAAKE-AAAHGR-KVIVLDY----VIPSPQGTTWGLGGTCVNVGC 155 (312)
Q Consensus 92 --~~~~------~~~~~~~~~d~vivg~G~~gl--~~a~~-~~~~~~-~~~~ve~----~~~~~~~~v~a~Gd~~~~~~~ 155 (312)
..++ ++...++++|.||++.|...- ..... ..+.+. ..++++. .++|+.++|||+||+....
T Consensus 553 ~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~-- 630 (654)
T PRK12769 553 PDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGA-- 630 (654)
T ss_pred cCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCC--
Confidence 0111 111136899999999996432 11111 122222 2355553 3689999999999965432
Q ss_pred chhhHHHHHHHHHHHHHHH
Q psy11185 156 IPKKLMHQAALLGEAIKDA 174 (312)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~ 174 (312)
.....|..+++....+
T Consensus 631 ---~~vv~Ai~~Gr~AA~~ 646 (654)
T PRK12769 631 ---DLVVTAMAEGRHAAQG 646 (654)
T ss_pred ---cHHHHHHHHHHHHHHH
Confidence 2334555555555443
No 150
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.68 E-value=9.1e-07 Score=80.39 Aligned_cols=198 Identities=14% Similarity=0.126 Sum_probs=105.0
Q ss_pred ccEEEEecCcchHHHHHHHHHCCC---cEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHH-HHHHHHHHHHc--
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGR---KVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL-LGEAIKDAVAY-- 177 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~---~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~-- 177 (312)
.+++|||+|++|+..|..|.+... .+.++|+...-..+-.|.....+...+.....+...... ...++......
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 479999999999999999875432 377888766555444455444333222111111111011 11111111111
Q ss_pred CCc----cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEe----eCCeEEEEecCCCeEEEEcCe
Q psy11185 178 GWE----IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFI----DQHSVEATMKNGEKKTLTAEN 249 (312)
Q Consensus 178 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~----~~~~~~v~~~~G~~~~i~ad~ 249 (312)
... .....+.++....|..|+..+.+.+. .......+..++...... +.....+...+| ....||-
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~----~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g--~~~~ad~ 155 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALL----ARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG--PSEIADI 155 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHH----HhcCccceeEEeeeeecceeccCCceEEEecCCC--CeeeeeE
Confidence 000 11112344555666666655544332 111111355554443222 234566777888 7889999
Q ss_pred EEEccCCCCCCCCC-----CCCCcceeccccccCC--CCCCCeEEEEcCchhhHHHHHHhhcCce
Q psy11185 250 ILIATGGRPNYPDI-----PGAKEHCISSDDIFSL--EKPPGKTLVVGAGYIGKLETWDSNSGCG 307 (312)
Q Consensus 250 vVlAtG~~p~~p~~-----~g~~~~~~~~~~~~~~--~~~~~~v~VvG~G~sa~~~a~~l~~~~~ 307 (312)
+|+|||+.+..++. ++...++.+......+ -....+|+|+|+|.+-.+....+...+.
T Consensus 156 ~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh 220 (474)
T COG4529 156 IVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGH 220 (474)
T ss_pred EEEeccCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCC
Confidence 99999965444332 3332232222222222 2334469999999999999998887553
No 151
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.66 E-value=1.9e-07 Score=86.27 Aligned_cols=150 Identities=25% Similarity=0.323 Sum_probs=90.9
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN 183 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 183 (312)
-.+.|||+||+|+.+|..|...+..+++++.... .|+... ++ ++
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~--------~GGll~-------------------------yG--IP- 167 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL--------DGGLLL-------------------------YG--IP- 167 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC--------CceeEE-------------------------ec--Cc-
Confidence 5799999999999999999999999999886442 222111 11 00
Q ss_pred ccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccC-CCCCCCC
Q psy11185 184 VKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATG-GRPNYPD 262 (312)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG-~~p~~p~ 262 (312)
..+.+-+.+ ......+...|+++........ .++.+. -.-.+|+|++||| ..|+..+
T Consensus 168 --~~kl~k~i~------------d~~i~~l~~~Gv~~~~~~~vG~-----~it~~~---L~~e~Dav~l~~G~~~~~~l~ 225 (457)
T COG0493 168 --DFKLPKDIL------------DRRLELLERSGVEFKLNVRVGR-----DITLEE---LLKEYDAVFLATGAGKPRPLD 225 (457)
T ss_pred --hhhccchHH------------HHHHHHHHHcCeEEEEcceECC-----cCCHHH---HHHhhCEEEEeccccCCCCCC
Confidence 011111111 1112345677888876553211 122211 1223599999999 5788888
Q ss_pred CCCCCcc-eeccccc---------c------CCCCCCCeEEEEcCchhhHHHHHH-hhcCceeeee
Q psy11185 263 IPGAKEH-CISSDDI---------F------SLEKPPGKTLVVGAGYIGKLETWD-SNSGCGNVTI 311 (312)
Q Consensus 263 ~~g~~~~-~~~~~~~---------~------~~~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V~~ 311 (312)
++|.+.. .+...++ . .....+++|+|||+|.+|++++.. +..++++|+.
T Consensus 226 i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~ 291 (457)
T COG0493 226 IPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTC 291 (457)
T ss_pred CCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEE
Confidence 9988642 1111111 1 111223789999999999977755 7777777763
No 152
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.66 E-value=3.2e-07 Score=92.29 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=90.1
Q ss_pred hhhhhhhHhhhccCCeEEEEEcc--CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCC-ee-EEEEe-----e
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRS--VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADG-KL-KVQYK-----N 90 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~--~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~-~~-~v~~~-----~ 90 (312)
++|+|+|..+.++|++||+++|+ ..++....++ .+ ..++||++++++.++++..++++ .+ .+.+. .
T Consensus 457 ~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~----~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~ 531 (944)
T PRK12779 457 NTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEEL----HH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGE 531 (944)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCcccccccHHHH----HH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEecc
Confidence 57999999999999999999983 3556544443 22 34679999999999998754322 22 22221 0
Q ss_pred -ccccc-----cCCCccccccEEEEecCcchHHHHHHH---HHCCC-cEEEEec-cCCCCCCcccccCCcccccccchhh
Q psy11185 91 -VAEVR-----QDNTHKYDYDLLVLGGGSGGLAAAKEA---AAHGR-KVIVLDY-VIPSPQGTTWGLGGTCVNVGCIPKK 159 (312)
Q Consensus 91 -~~~~~-----~~~~~~~~~d~vivg~G~~gl~~a~~~---~~~~~-~~~~ve~-~~~~~~~~v~a~Gd~~~~~~~~~~~ 159 (312)
...++ .+....+++|.||++.|..+-...... .+.+. ..+.++. .++|+.|+|||+||+.... .
T Consensus 532 ~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~-----~ 606 (944)
T PRK12779 532 PDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG-----S 606 (944)
T ss_pred ccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh-----H
Confidence 00010 111246899999999996443221111 11122 2355554 5789999999999965432 3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11185 160 LMHQAALLGEAIKDAV 175 (312)
Q Consensus 160 ~~~~a~~~~~~~~~~~ 175 (312)
....|..+++..+.+.
T Consensus 607 ~vv~Ai~eGr~AA~~I 622 (944)
T PRK12779 607 TAIRAAGDGQAAAKEI 622 (944)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666666655544
No 153
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.65 E-value=2.8e-07 Score=91.91 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=90.2
Q ss_pred hhhhhhhHhhhccC--CeEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEE---Eee-c
Q psy11185 20 DSGLECAGFLNGLG--FNATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQ---YKN-V 91 (312)
Q Consensus 20 ~ig~E~A~~l~~~g--~~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~---~~~-~ 91 (312)
++|+|+|..+.+++ .+|||++| + +.++..++++.+.+ ++||++++++.+.++.. ++.+.+. +.. .
T Consensus 678 nVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~Al-----eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d 750 (1019)
T PRK09853 678 NTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEAL-----EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPD 750 (1019)
T ss_pred hHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHH-----HcCCEEEeCCceEEEEc--CCcEEEEEEEeeccc
Confidence 47999999998884 48999998 4 67777766653332 46999999999998863 2322221 110 0
Q ss_pred cccc-----cCCCccccccEEEEecCcc-hHHHHHHH-HHCC-CcEEEEeccCCCCCCcccccCCcccccccchhhHHHH
Q psy11185 92 AEVR-----QDNTHKYDYDLLVLGGGSG-GLAAAKEA-AAHG-RKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163 (312)
Q Consensus 92 ~~~~-----~~~~~~~~~d~vivg~G~~-gl~~a~~~-~~~~-~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~ 163 (312)
..++ ......+++|.||++.|.. ........ ...+ ...+.++..++|+.|+||++||+.... .....
T Consensus 751 ~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp-----~tvv~ 825 (1019)
T PRK09853 751 ESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP-----STIVA 825 (1019)
T ss_pred CCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCc-----hHHHH
Confidence 0000 0112568999999999963 22222111 1111 123556878899999999999965332 24456
Q ss_pred HHHHHHHHHHHH
Q psy11185 164 AALLGEAIKDAV 175 (312)
Q Consensus 164 a~~~~~~~~~~~ 175 (312)
+..+++.+..+.
T Consensus 826 Ai~qGr~AA~nI 837 (1019)
T PRK09853 826 AIADARRAADAI 837 (1019)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 154
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.59 E-value=6.3e-07 Score=90.94 Aligned_cols=145 Identities=14% Similarity=0.178 Sum_probs=88.6
Q ss_pred hhhhhhhHhhhccCCe-EEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEee-----
Q psy11185 20 DSGLECAGFLNGLGFN-ATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKN----- 90 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~-vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~----- 90 (312)
++|+|+|..+.++|.+ |++++| + ..++....+ .+.++++||++++++.+.++..+.++.+ .+.+..
T Consensus 581 ~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~ 655 (1006)
T PRK12775 581 NTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGE 655 (1006)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecc
Confidence 5799999999999985 888987 3 344544333 3456788999999999999875444533 333321
Q ss_pred -ccccc-----cCCCccccccEEEEecCcchHH-HHHHH--HHCCC-cEEEEec-----cCCCCCCcccccCCccccccc
Q psy11185 91 -VAEVR-----QDNTHKYDYDLLVLGGGSGGLA-AAKEA--AAHGR-KVIVLDY-----VIPSPQGTTWGLGGTCVNVGC 155 (312)
Q Consensus 91 -~~~~~-----~~~~~~~~~d~vivg~G~~gl~-~a~~~--~~~~~-~~~~ve~-----~~~~~~~~v~a~Gd~~~~~~~ 155 (312)
...++ .+...++++|.||++.|...-. +.... ...+. ..+.++. .++|+.|+|||+||++...
T Consensus 656 ~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~-- 733 (1006)
T PRK12775 656 PDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG-- 733 (1006)
T ss_pred cCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc--
Confidence 00010 1111358999999999964322 11110 11222 2355664 6789999999999966432
Q ss_pred chhhHHHHHHHHHHHHHHH
Q psy11185 156 IPKKLMHQAALLGEAIKDA 174 (312)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~~ 174 (312)
.....+..+++....+
T Consensus 734 ---~~vv~Ai~~Gr~AA~~ 749 (1006)
T PRK12775 734 ---ATVILAMGAGRRAARS 749 (1006)
T ss_pred ---cHHHHHHHHHHHHHHH
Confidence 2334455555544443
No 155
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.59 E-value=2.7e-07 Score=86.62 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=85.8
Q ss_pred hhhhhhhHhhhccCC-eEEEEEccCCCccchH-------HHH-HHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEe
Q psy11185 20 DSGLECAGFLNGLGF-NATVMIRSVPLRGFDQ-------QMA-KLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYK 89 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~-~vtl~~~~~~l~~~~~-------~~~-~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~ 89 (312)
++|+|+|..+.++|. +||++++.. ++..+. .+. ....+.+++.||++++++.++++... ++.+ .|.+.
T Consensus 291 ~~g~e~A~~~~~~ga~~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~ 368 (471)
T PRK12810 291 DTGMDCVGTAIRQGAKSVTQRDIMP-MPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGE-NGKVTGVKVV 368 (471)
T ss_pred HHHHHHHHHHHHcCCCeEEEccccC-CCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEcc-CCEEEEEEEE
Confidence 479999998888886 799776532 222221 000 11345677889999999999999742 3433 33332
Q ss_pred -----ecc-ccccCCCccccccEEEEecCcch--HHHHHHH-HHCCC-cEEEEe-ccCCCCCCcccccCCcccccccchh
Q psy11185 90 -----NVA-EVRQDNTHKYDYDLLVLGGGSGG--LAAAKEA-AAHGR-KVIVLD-YVIPSPQGTTWGLGGTCVNVGCIPK 158 (312)
Q Consensus 90 -----~~~-~~~~~~~~~~~~d~vivg~G~~g--l~~a~~~-~~~~~-~~~~ve-~~~~~~~~~v~a~Gd~~~~~~~~~~ 158 (312)
+++ ....+...++++|.||++.|... ..+...+ ...+. ..++++ ..++|+.|+||++||+....
T Consensus 369 ~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~----- 443 (471)
T PRK12810 369 RTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQ----- 443 (471)
T ss_pred EEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCc-----
Confidence 110 00011124689999999999432 1122111 22222 345666 67889999999999965422
Q ss_pred hHHHHHHHHHHHHHH
Q psy11185 159 KLMHQAALLGEAIKD 173 (312)
Q Consensus 159 ~~~~~a~~~~~~~~~ 173 (312)
.....+..+++....
T Consensus 444 ~~~~~Av~~G~~AA~ 458 (471)
T PRK12810 444 SLVVWAIAEGRQAAR 458 (471)
T ss_pred hhHHHHHHHHHHHHH
Confidence 233445555555444
No 156
>PRK13984 putative oxidoreductase; Provisional
Probab=98.57 E-value=8.3e-07 Score=86.00 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=78.2
Q ss_pred hhhhhhhHhhhccCC------eEEEEEc--c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEe
Q psy11185 20 DSGLECAGFLNGLGF------NATVMIR--S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYK 89 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~------~vtl~~~--~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~ 89 (312)
++|+|+|..|+++|. +|+++.. . ..++....++ .+ +.++||++++++.+.++... ++.+ .+.+.
T Consensus 428 ~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~----~~-~~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~ 501 (604)
T PRK13984 428 NVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEI----EE-GLEEGVVIYPGWGPMEVVIE-NDKVKGVKFK 501 (604)
T ss_pred hHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHH----HH-HHHcCCEEEeCCCCEEEEcc-CCEEEEEEEE
Confidence 589999999999864 7888753 2 3445444432 22 34679999999999888643 3322 33332
Q ss_pred ec-----cccc------cCCCccccccEEEEecCcch-HHHHH-HH---HHCCCcEEEEeccCCCCCCcccccCCccc
Q psy11185 90 NV-----AEVR------QDNTHKYDYDLLVLGGGSGG-LAAAK-EA---AAHGRKVIVLDYVIPSPQGTTWGLGGTCV 151 (312)
Q Consensus 90 ~~-----~~~~------~~~~~~~~~d~vivg~G~~g-l~~a~-~~---~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~ 151 (312)
.. ..++ +.....+++|.||++.|... ..... .+ .......+++|..++|+.++|||+||++.
T Consensus 502 ~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~ 579 (604)
T PRK13984 502 KCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVH 579 (604)
T ss_pred EEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCC
Confidence 10 0010 11124689999999999643 22111 11 11122347788889999999999999654
No 157
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.57 E-value=6.3e-07 Score=87.19 Aligned_cols=144 Identities=17% Similarity=0.198 Sum_probs=88.2
Q ss_pred hhhhhhhHhhhccCC-eEEEEEc-cC-CCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEE---eecc
Q psy11185 20 DSGLECAGFLNGLGF-NATVMIR-SV-PLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQY---KNVA 92 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~-~vtl~~~-~~-~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~---~~~~ 92 (312)
++|+|+|..+.++|. +||+++| ++ .++..+.++. .++++||++++++.++++..++++.+ .+.+ ..++
T Consensus 461 ~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~-----~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~ 535 (639)
T PRK12809 461 DTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV-----NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGE 535 (639)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH-----HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecC
Confidence 578999999889995 8999998 43 3666655532 35678999999999999975544533 2322 1110
Q ss_pred ---ccc------cCCCccccccEEEEecCcchH--HHHH-HHHHCCC-cEEEEec----cCCCCCCcccccCCccccccc
Q psy11185 93 ---EVR------QDNTHKYDYDLLVLGGGSGGL--AAAK-EAAAHGR-KVIVLDY----VIPSPQGTTWGLGGTCVNVGC 155 (312)
Q Consensus 93 ---~~~------~~~~~~~~~d~vivg~G~~gl--~~a~-~~~~~~~-~~~~ve~----~~~~~~~~v~a~Gd~~~~~~~ 155 (312)
.++ ++....+++|.||++.|...- .... ...+.+. ..+.++. .++|+.++||++||+....
T Consensus 536 ~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~-- 613 (639)
T PRK12809 536 PGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGA-- 613 (639)
T ss_pred cCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCc--
Confidence 111 112246899999999995331 1111 1112222 2344543 3689999999999965432
Q ss_pred chhhHHHHHHHHHHHHHH
Q psy11185 156 IPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 156 ~~~~~~~~a~~~~~~~~~ 173 (312)
.....+..+++....
T Consensus 614 ---~~vv~Ai~~Gr~AA~ 628 (639)
T PRK12809 614 ---DLVVTAMAAGRQAAR 628 (639)
T ss_pred ---hHHHHHHHHHHHHHH
Confidence 233455555555444
No 158
>PLN02463 lycopene beta cyclase
Probab=98.56 E-value=5e-07 Score=83.81 Aligned_cols=140 Identities=20% Similarity=0.155 Sum_probs=76.4
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcC-Cc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYG-WE 180 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 180 (312)
..+|++|||+|++|+++|..+.+.|.++.++|+......|+.|.... ...... .. ...+.. . +. ..
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~---------~~l~~l-gl-~~~l~~-~-w~~~~ 93 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWV---------DEFEAL-GL-LDCLDT-T-WPGAV 93 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHH---------HHHHHC-Cc-HHHHHh-h-CCCcE
Confidence 45899999999999999999999999999999865433343332110 000000 00 000000 0 00 00
Q ss_pred --cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEccCC
Q psy11185 181 --IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVEATMKNGEKKTLTAENILIATGG 256 (312)
Q Consensus 181 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlAtG~ 256 (312)
+........+. .+.......+...+...+...++++....+..++ ...+.+++.+| .++.||.||+|+|.
T Consensus 94 v~~~~~~~~~~~~----~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG--~~i~A~lVI~AdG~ 167 (447)
T PLN02463 94 VYIDDGKKKDLDR----PYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDG--VKIQASLVLDATGF 167 (447)
T ss_pred EEEeCCCCccccC----cceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECcCC
Confidence 00000000000 0111122334444445566678888765544333 34567788888 68999999999997
Q ss_pred CCCC
Q psy11185 257 RPNY 260 (312)
Q Consensus 257 ~p~~ 260 (312)
.+..
T Consensus 168 ~s~l 171 (447)
T PLN02463 168 SRCL 171 (447)
T ss_pred CcCc
Confidence 6653
No 159
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.55 E-value=1.8e-07 Score=85.92 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=66.6
Q ss_pred hhhhhhh-Hhhh----ccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe-ecc
Q psy11185 20 DSGLECA-GFLN----GLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK-NVA 92 (312)
Q Consensus 20 ~ig~E~A-~~l~----~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~-~~~ 92 (312)
.||+|++ .+++ ++|++|+++++ ++.++++ ++.+.+.+.|++.|+++++++++.+++..+ +.+..... ++.
T Consensus 225 vIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~g~ 301 (422)
T PRK05329 225 VLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRNHG 301 (422)
T ss_pred eecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeCCc
Confidence 4999999 8886 57999999998 6888875 688899999999999999999999988643 32333222 221
Q ss_pred ccccCCCccccccEEEEecCc
Q psy11185 93 EVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 93 ~~~~~~~~~~~~d~vivg~G~ 113 (312)
. ..+++|.+|+++|+
T Consensus 302 ~------~~i~AD~VVLAtGr 316 (422)
T PRK05329 302 D------IPLRARHFVLATGS 316 (422)
T ss_pred e------EEEECCEEEEeCCC
Confidence 1 45789999999995
No 160
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.54 E-value=1.3e-06 Score=83.99 Aligned_cols=145 Identities=18% Similarity=0.250 Sum_probs=89.2
Q ss_pred hhhhhhhHhhhccC-CeEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEE---eec--
Q psy11185 20 DSGLECAGFLNGLG-FNATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQY---KNV-- 91 (312)
Q Consensus 20 ~ig~E~A~~l~~~g-~~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~---~~~-- 91 (312)
+.|+|+|..+.++| .+|+|++| + ..++..+.++ +...++||++++++.+.+++...++.+.+.+ ..+
T Consensus 277 ~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~ 351 (564)
T PRK12771 277 NTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEI-----EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMEL 351 (564)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHH-----HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEeccc
Confidence 57889999999998 78999998 4 3456555443 3345679999999999999764444332222 110
Q ss_pred -cccc----cCCCccccccEEEEecCcchH-HHHHH--HHHCCCcEEEEec-cCCCCCCcccccCCcccccccchhhHHH
Q psy11185 92 -AEVR----QDNTHKYDYDLLVLGGGSGGL-AAAKE--AAAHGRKVIVLDY-VIPSPQGTTWGLGGTCVNVGCIPKKLMH 162 (312)
Q Consensus 92 -~~~~----~~~~~~~~~d~vivg~G~~gl-~~a~~--~~~~~~~~~~ve~-~~~~~~~~v~a~Gd~~~~~~~~~~~~~~ 162 (312)
..++ .....++++|.||++.|...- ..... ........+.+|. .++|+.++||++||+.... ....
T Consensus 352 ~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~-----~~v~ 426 (564)
T PRK12771 352 DEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP-----RTVT 426 (564)
T ss_pred CCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCc-----hHHH
Confidence 0011 112247899999999996432 11111 1111223456665 6789999999999965422 3444
Q ss_pred HHHHHHHHHHHH
Q psy11185 163 QAALLGEAIKDA 174 (312)
Q Consensus 163 ~a~~~~~~~~~~ 174 (312)
.+..+++....+
T Consensus 427 ~Av~~G~~aA~~ 438 (564)
T PRK12771 427 TAIGHGKKAARN 438 (564)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 161
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.53 E-value=1e-06 Score=88.25 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=88.3
Q ss_pred hhhhhhhHhhhcc-CC-eEEEEEc-c-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEE---Eee-c
Q psy11185 20 DSGLECAGFLNGL-GF-NATVMIR-S-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQ---YKN-V 91 (312)
Q Consensus 20 ~ig~E~A~~l~~~-g~-~vtl~~~-~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~---~~~-~ 91 (312)
++|||+|..+.++ |. +|||++| + +.++..+.++.+. .++||++++++.+.+++ ++.+.+. +.. +
T Consensus 676 nvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~a-----leeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d 747 (1012)
T TIGR03315 676 NTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEA-----LEDGVDFKELLSPESFE---DGTLTCEVMKLGEPD 747 (1012)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHH-----HHcCCEEEeCCceEEEE---CCeEEEEEEEeeccc
Confidence 5899999999887 75 8999998 4 5677766654332 24799999998888886 2223221 110 0
Q ss_pred cccc-----cCCCccccccEEEEecCcch-HHHHHHH-HHCCC-cEEEEecc-CCCCCCcccccCCcccccccchhhHHH
Q psy11185 92 AEVR-----QDNTHKYDYDLLVLGGGSGG-LAAAKEA-AAHGR-KVIVLDYV-IPSPQGTTWGLGGTCVNVGCIPKKLMH 162 (312)
Q Consensus 92 ~~~~-----~~~~~~~~~d~vivg~G~~g-l~~a~~~-~~~~~-~~~~ve~~-~~~~~~~v~a~Gd~~~~~~~~~~~~~~ 162 (312)
..++ .+....+++|.||++.|... ..+...+ ...+. ..+.+|.. .+|+.++||++||++... ....
T Consensus 748 ~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP-----~tVv 822 (1012)
T TIGR03315 748 ASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP-----ATIV 822 (1012)
T ss_pred CCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc-----cHHH
Confidence 0000 01113689999999999632 2222211 11122 23556654 789999999999965432 2445
Q ss_pred HHHHHHHHHHHHH
Q psy11185 163 QAALLGEAIKDAV 175 (312)
Q Consensus 163 ~a~~~~~~~~~~~ 175 (312)
.+..+++....+.
T Consensus 823 ~AIaqGr~AA~nI 835 (1012)
T TIGR03315 823 EAIADGRKAANAI 835 (1012)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666654
No 162
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=1.7e-06 Score=83.33 Aligned_cols=51 Identities=31% Similarity=0.455 Sum_probs=40.9
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCC---CcEEEEeccCCCCCCcccccCCcc
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHG---RKVIVLDYVIPSPQGTTWGLGGTC 150 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~---~~~~~ve~~~~~~~~~v~a~Gd~~ 150 (312)
+++++|+||||+|.+|+.+|..+.+.+ .+++++++.........++.|+.+
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~ 55 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTA 55 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccc
Confidence 467899999999999999999998887 689999987655444556666544
No 163
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.51 E-value=2.2e-06 Score=82.52 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=83.8
Q ss_pred cccccEEEEecCcchHHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCcccccc-------------------cchhh
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGTCVNVG-------------------CIPKK 159 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~~~~~~-------------------~~~~~ 159 (312)
++++|+||||+|.+|+.+|..+.+.+ .+|+++++.........++.|+.+...+ +.+..
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 56889999999999999999998764 5899999876555555556555432211 11111
Q ss_pred HHHHHHHHHHHHHHHHHcCCccCCcccccc-----CHHHHHHHHHH---HHHHhhHHHHHHHhc-CCceEEece-eEE--
Q psy11185 160 LMHQAALLGEAIKDAVAYGWEIPNVKSVQH-----NWANLREAVQN---HVKSVNWVTRVMLRD-KKVDYLNAL-GKF-- 227 (312)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~-~gV~~~~~~-~~~-- 227 (312)
...........+.+...+|..+.......+ ......+.... .-..+...+...+.. .+|+++..+ ...
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 222233334444445556766532111111 00000000000 001122222333333 478876554 222
Q ss_pred eeCCeEE----EEecCCCeEEEEcCeEEEccCCCCC
Q psy11185 228 IDQHSVE----ATMKNGEKKTLTAENILIATGGRPN 259 (312)
Q Consensus 228 ~~~~~~~----v~~~~G~~~~i~ad~vVlAtG~~p~ 259 (312)
.+...+. +...+|+...+.|+.||+|||+...
T Consensus 162 ~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 162 VDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred EeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 2233332 3345776678999999999996553
No 164
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=3.1e-06 Score=81.22 Aligned_cols=51 Identities=39% Similarity=0.635 Sum_probs=40.4
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcc
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTC 150 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~ 150 (312)
..+++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+.+
T Consensus 2 ~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~ 52 (566)
T PRK06452 2 EKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIA 52 (566)
T ss_pred CcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchh
Confidence 346899999999999999999999989999999987654444455555443
No 165
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.47 E-value=4.8e-06 Score=80.72 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=86.4
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc---------------------cchhh
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG---------------------CIPKK 159 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~---------------------~~~~~ 159 (312)
..++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+.+...+ +.+..
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l 127 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 127 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 457899999999999999999999899999999876554444556555432211 11111
Q ss_pred HHHHHHHHHHHHHHHHHcCCccCCccccccCHHHHH-------------HHHHH---HHHHhhHHHHHHHhcCCceEEec
Q psy11185 160 LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLR-------------EAVQN---HVKSVNWVTRVMLRDKKVDYLNA 223 (312)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~gV~~~~~ 223 (312)
...........+.+...+|.+|.......+....+. +.... .-..+...+...+.+.+|+++..
T Consensus 128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 207 (635)
T PLN00128 128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVE 207 (635)
T ss_pred HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 222233344444455556766542111101000000 00000 00112223444455678988765
Q ss_pred e-eEE-e-e-CCeE---EE-EecCCCeEEEEcCeEEEccCCCC
Q psy11185 224 L-GKF-I-D-QHSV---EA-TMKNGEKKTLTAENILIATGGRP 258 (312)
Q Consensus 224 ~-~~~-~-~-~~~~---~v-~~~~G~~~~i~ad~vVlAtG~~p 258 (312)
+ ... + + ...+ .+ ...+|+...+.|+.||+|||+..
T Consensus 208 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 208 YFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred eEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 4 222 2 2 2222 22 22467677899999999999654
No 166
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.46 E-value=1.4e-06 Score=83.63 Aligned_cols=151 Identities=22% Similarity=0.266 Sum_probs=84.7
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
..+++|||+||+|+.+|..+.+.|.+++++|+... .|+... ++. +
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~--------~GG~l~-------------------------~gi--p 181 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK--------LGGMMR-------------------------YGI--P 181 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC--------CCCeee-------------------------ecC--C
Confidence 45799999999999999999999999999987542 232110 110 0
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC-CCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p-~~p 261 (312)
.++.+.+..... ...+...|+++..+.....+ +.. .. ....+|.||+|||+.+ ..+
T Consensus 182 ---~~~~~~~~~~~~------------l~~~~~~Gv~~~~~~~~~~~---~~~--~~---~~~~~D~Vi~AtG~~~~~~~ 238 (564)
T PRK12771 182 ---AYRLPREVLDAE------------IQRILDLGVEVRLGVRVGED---ITL--EQ---LEGEFDAVFVAIGAQLGKRL 238 (564)
T ss_pred ---CccCCHHHHHHH------------HHHHHHCCCEEEeCCEECCc---CCH--HH---HHhhCCEEEEeeCCCCCCcC
Confidence 011111111110 12344567776544321001 000 00 1124899999999764 445
Q ss_pred CCCCCCcce-eccccc------cCCCCCCCeEEEEcCchhhHHHHHHhh-cCceeeee
Q psy11185 262 DIPGAKEHC-ISSDDI------FSLEKPPGKTLVVGAGYIGKLETWDSN-SGCGNVTI 311 (312)
Q Consensus 262 ~~~g~~~~~-~~~~~~------~~~~~~~~~v~VvG~G~sa~~~a~~l~-~~~~~V~~ 311 (312)
.+++..... ...-++ ......+++|+|||+|.+|++.+..+. .+++.|++
T Consensus 239 ~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~i 296 (564)
T PRK12771 239 PIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTI 296 (564)
T ss_pred CCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEE
Confidence 677754321 111111 112345778999999999998777544 44456654
No 167
>KOG0399|consensus
Probab=98.46 E-value=7.4e-07 Score=87.35 Aligned_cols=149 Identities=23% Similarity=0.383 Sum_probs=92.4
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
-..+.|||.||+||++|.+|.+.|..+++.|...+ +|+.. .+|. |
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr--------~ggll-------------------------~ygi--p 1829 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR--------VGGLL-------------------------MYGI--P 1829 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC--------cCcee-------------------------eecC--C
Confidence 46799999999999999999999999999887543 34311 1221 1
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~p 261 (312)
. .+.|--.+.+.+ ..+...||+++..+... +. +.. |+ -.-..|+||+|+|+ .|+-+
T Consensus 1830 n---mkldk~vv~rrv------------~ll~~egi~f~tn~eig--k~---vs~-d~--l~~~~daiv~a~gst~prdl 1886 (2142)
T KOG0399|consen 1830 N---MKLDKFVVQRRV------------DLLEQEGIRFVTNTEIG--KH---VSL-DE--LKKENDAIVLATGSTTPRDL 1886 (2142)
T ss_pred c---cchhHHHHHHHH------------HHHHhhCceEEeecccc--cc---ccH-HH--HhhccCeEEEEeCCCCCcCC
Confidence 1 122211111111 23456799998765321 11 211 22 23457999999996 58888
Q ss_pred CCCCCCcceec-------c--c-------cccCCCCCCCeEEEEcCchhhHHHHHH-hhcCceee
Q psy11185 262 DIPGAKEHCIS-------S--D-------DIFSLEKPPGKTLVVGAGYIGKLETWD-SNSGCGNV 309 (312)
Q Consensus 262 ~~~g~~~~~~~-------~--~-------~~~~~~~~~~~v~VvG~G~sa~~~a~~-l~~~~~~V 309 (312)
++||-+....| . . +.......+|+|+|||||.+|-++.-. .+.++++|
T Consensus 1887 pv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv 1951 (2142)
T KOG0399|consen 1887 PVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSV 1951 (2142)
T ss_pred CCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhcccee
Confidence 99988653211 1 1 111223467789999999999865544 66777665
No 168
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.44 E-value=3.1e-06 Score=67.26 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=74.6
Q ss_pred EEEecCcchHHHHHHHHHC-----CCcEEEEeccCCCCCCcccccC-CcccccccchhhHHHHHHHH-HHHHHHHHHcCC
Q psy11185 107 LVLGGGSGGLAAAKEAAAH-----GRKVIVLDYVIPSPQGTTWGLG-GTCVNVGCIPKKLMHQAALL-GEAIKDAVAYGW 179 (312)
Q Consensus 107 vivg~G~~gl~~a~~~~~~-----~~~~~~ve~~~~~~~~~v~a~G-d~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~ 179 (312)
+|||+|++|+.++..|.+. ..++.++|+.. .....+|..- +.+...+.....+....... ..........+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~-~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP-FGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC-ccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 5999999999999999876 23689999843 3445566554 22211111111111111111 111111111110
Q ss_pred --ccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCce--EEeceeEEee--CCeEEEEecCCCeEEEEcCeEEEc
Q psy11185 180 --EIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVD--YLNALGKFID--QHSVEATMKNGEKKTLTAENILIA 253 (312)
Q Consensus 180 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~~~~~~~~--~~~~~v~~~~G~~~~i~ad~vVlA 253 (312)
........++.+..+-.|+....+.+. ..+ ..+++ .+...+..+. ...+.+.+.+| ..+.+|.||+|
T Consensus 80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~----~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~~d~VvLa 152 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALFGEYLRDRFDRLL----ARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADG--QSIRADAVVLA 152 (156)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHH----Hhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCC--CEEEeCEEEEC
Confidence 000111344555666666655544332 223 34544 4555544433 44577888888 78899999999
Q ss_pred cCC
Q psy11185 254 TGG 256 (312)
Q Consensus 254 tG~ 256 (312)
||.
T Consensus 153 ~Gh 155 (156)
T PF13454_consen 153 TGH 155 (156)
T ss_pred CCC
Confidence 996
No 169
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.43 E-value=6.1e-06 Score=79.90 Aligned_cols=158 Identities=18% Similarity=0.234 Sum_probs=87.8
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc----c-----------------chhh
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG----C-----------------IPKK 159 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~----~-----------------~~~~ 159 (312)
..++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+.....+ . .+..
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 457899999999999999999999899999999876555455566565432211 0 1111
Q ss_pred HHHHHHHHHHHHHHHHHcCCccCCccccccC---HHHH----------HHHHH---HHHHHhhHHHHHHHhcCCceEEec
Q psy11185 160 LMHQAALLGEAIKDAVAYGWEIPNVKSVQHN---WANL----------REAVQ---NHVKSVNWVTRVMLRDKKVDYLNA 223 (312)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~---~~~~~~~~~~~~~~~~~gV~~~~~ 223 (312)
...........+.+...+|..+.......+. +... .+... ..-..+...+...+.+.+|+++..
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 186 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEec
Confidence 1222333444444555566655321111000 0000 00000 001122333445566678998776
Q ss_pred e-eEE-e--eCCeEE-E---EecCCCeEEEEcCeEEEccCCCC
Q psy11185 224 L-GKF-I--DQHSVE-A---TMKNGEKKTLTAENILIATGGRP 258 (312)
Q Consensus 224 ~-~~~-~--~~~~~~-v---~~~~G~~~~i~ad~vVlAtG~~p 258 (312)
+ ... + +..++. + ...+|+...+.|+.||+|||+..
T Consensus 187 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 187 YFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred eEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 5 222 2 222222 2 33577677899999999999654
No 170
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.43 E-value=3.6e-06 Score=81.97 Aligned_cols=49 Identities=35% Similarity=0.416 Sum_probs=38.4
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG 148 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd 148 (312)
.++++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GG 50 (657)
T PRK08626 2 KIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGG 50 (657)
T ss_pred CceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhh
Confidence 4678999999999999999999999999999999865543333344333
No 171
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.40 E-value=7.2e-06 Score=78.80 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=83.3
Q ss_pred ccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCccccccc-------------------chhhH
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGC-------------------IPKKL 160 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~-------------------~~~~~ 160 (312)
+++|+||||+|.+|+.+|..+.+. +.+++++++.........++.|+.+...+. .+...
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 578999999999999999998875 468999998766555555666665432211 11111
Q ss_pred HHHHHHHHHHHHHHHHcCCccCCcccccc-----CHHHHHHHHHH---HHHHhhHHHHHHHhc-CCceEEece-eEE--e
Q psy11185 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQH-----NWANLREAVQN---HVKSVNWVTRVMLRD-KKVDYLNAL-GKF--I 228 (312)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~-~gV~~~~~~-~~~--~ 228 (312)
..........+.+...+|..+.......+ ......+.... .-..+...+...+.. .+|+++..+ ... .
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 161 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLV 161 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEe
Confidence 22223333444444556655532111111 00000000000 001122223333333 478876554 221 2
Q ss_pred eCCeEE----EEecCCCeEEEEcCeEEEccCCCCC
Q psy11185 229 DQHSVE----ATMKNGEKKTLTAENILIATGGRPN 259 (312)
Q Consensus 229 ~~~~~~----v~~~~G~~~~i~ad~vVlAtG~~p~ 259 (312)
+...+. +...+|+...+.|+.||+|||+...
T Consensus 162 ~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 162 DDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 233332 2345776678999999999996543
No 172
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=6.2e-06 Score=79.47 Aligned_cols=49 Identities=33% Similarity=0.606 Sum_probs=37.8
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcc
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTC 150 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~ 150 (312)
..++|+||||+|.+|+.+|..+.+. .+|+++++.........++.|+.+
T Consensus 3 ~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~ 51 (583)
T PRK08205 3 QHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMC 51 (583)
T ss_pred ceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchh
Confidence 3578999999999999999998875 789999987654444445555543
No 173
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=8e-06 Score=78.89 Aligned_cols=50 Identities=32% Similarity=0.486 Sum_probs=39.5
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT 149 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~ 149 (312)
...++|+||||+|.+|+.+|..+.+.+.+++++++.........++.|+.
T Consensus 9 ~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi 58 (598)
T PRK09078 9 IDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGI 58 (598)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCc
Confidence 34679999999999999999999998889999998754444445555553
No 174
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.39 E-value=6.6e-06 Score=79.81 Aligned_cols=50 Identities=34% Similarity=0.499 Sum_probs=39.7
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT 149 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~ 149 (312)
+++++|+||||+|.+|+.+|..+.+.|.+|+++++........+++.|+.
T Consensus 5 ~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi 54 (626)
T PRK07803 5 ERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGC 54 (626)
T ss_pred cceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccc
Confidence 45679999999999999999999999999999998754433345555543
No 175
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=8.1e-06 Score=78.66 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=85.9
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc---------------------cchhhH
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG---------------------CIPKKL 160 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~---------------------~~~~~~ 160 (312)
.++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+.+...+ +.+...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 47899999999999999999999899999999876554444555554322211 111112
Q ss_pred HHHHHHHHHHHHHHHHcCCccCCccccccC---HHH---------HHHHHHH---HHHHhhHHHHHHHhcCCceEEece-
Q psy11185 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHN---WAN---------LREAVQN---HVKSVNWVTRVMLRDKKVDYLNAL- 224 (312)
Q Consensus 161 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~---~~~~~~~~~~~~~~~~gV~~~~~~- 224 (312)
..........+.+...+|.+|.......+. +.. .++..+. .-..+...+...+...+|+++..+
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~ 165 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY 165 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcE
Confidence 222334444455555667666331110000 000 0000000 011222234444556788887665
Q ss_pred eEE-e-e-CCeE-EE---EecCCCeEEEEcCeEEEccCCCC
Q psy11185 225 GKF-I-D-QHSV-EA---TMKNGEKKTLTAENILIATGGRP 258 (312)
Q Consensus 225 ~~~-~-~-~~~~-~v---~~~~G~~~~i~ad~vVlAtG~~p 258 (312)
... + + ..++ -+ ...+|+...+.|+.||+|||+..
T Consensus 166 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 166 ALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred EEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 222 2 2 2222 22 23567667899999999999654
No 176
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.37 E-value=1.6e-06 Score=79.45 Aligned_cols=32 Identities=41% Similarity=0.706 Sum_probs=30.4
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
+|++|||+||+|+.+|..+.+.|.+++++|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999986
No 177
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.35 E-value=1.2e-05 Score=77.58 Aligned_cols=51 Identities=29% Similarity=0.512 Sum_probs=41.1
Q ss_pred CccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185 99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT 149 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~ 149 (312)
++++++|+||||+|.+|+.+|..+.+.|.+|+++++.........++.|+.
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi 58 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGI 58 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCc
Confidence 356789999999999999999999998889999998765544555565553
No 178
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.34 E-value=1.8e-06 Score=79.32 Aligned_cols=92 Identities=24% Similarity=0.333 Sum_probs=64.5
Q ss_pred cCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCcc-eecc---ccccC---CCCCCCeE
Q psy11185 215 DKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH-CISS---DDIFS---LEKPPGKT 286 (312)
Q Consensus 215 ~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~-~~~~---~~~~~---~~~~~~~v 286 (312)
..++++...+ +..++...-.+.+.+| .+.+|++|+|||++|..++ +.... .++. .+... .....+++
T Consensus 65 ~~~i~~~~~~~v~~id~~~~~v~~~~g---~~~yd~LvlatGa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 139 (415)
T COG0446 65 ATGIDVRTGTEVTSIDPENKVVLLDDG---EIEYDYLVLATGARPRPPP--ISDWEGVVTLRLREDAEALKGGAEPPKDV 139 (415)
T ss_pred hhCCEEeeCCEEEEecCCCCEEEECCC---cccccEEEEcCCCcccCCC--ccccCceEEECCHHHHHHHHHHHhccCeE
Confidence 4567775544 6666766667777777 8899999999999999876 22111 1111 11111 11225789
Q ss_pred EEEcCchhhHHHHHHhhcCceeeee
Q psy11185 287 LVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 287 ~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+|+|+|..|+++|..+...+.+|++
T Consensus 140 ~vvG~G~~gle~A~~~~~~G~~v~l 164 (415)
T COG0446 140 VVVGAGPIGLEAAEAAAKRGKKVTL 164 (415)
T ss_pred EEECCcHHHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999888876
No 179
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.34 E-value=5.1e-06 Score=78.27 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=81.9
Q ss_pred hhhhhhhHhhhccC-CeEEEEEc-cCCCccch---------H--HHHHHHHHHHhccceEE-EeeceeeEEEEcCCCee-
Q psy11185 20 DSGLECAGFLNGLG-FNATVMIR-SVPLRGFD---------Q--QMAKLICEEMAEGGVHF-LHKCLPLSVTKLADGKL- 84 (312)
Q Consensus 20 ~ig~E~A~~l~~~g-~~vtl~~~-~~~l~~~~---------~--~~~~~~~~~l~~~gi~~-~~~~~v~~~~~~~~~~~- 84 (312)
++|+|+|..+.++| .+||++++ ++.+.... . ++.....+..+..||++ ++++.+.++..+.++.+
T Consensus 293 ~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~ 372 (485)
T TIGR01317 293 DTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVT 372 (485)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEE
Confidence 57999987777766 58999997 44432211 0 11122233333456654 46788888865433333
Q ss_pred EEEE-----eeccccc------cCCCccccccEEEEecCcc--hHHHHHHH-HHCCC-c-EEEEeccCCCCCCcccccCC
Q psy11185 85 KVQY-----KNVAEVR------QDNTHKYDYDLLVLGGGSG--GLAAAKEA-AAHGR-K-VIVLDYVIPSPQGTTWGLGG 148 (312)
Q Consensus 85 ~v~~-----~~~~~~~------~~~~~~~~~d~vivg~G~~--gl~~a~~~-~~~~~-~-~~~ve~~~~~~~~~v~a~Gd 148 (312)
.+.+ ..++.++ ++...++++|.||++.|.. ...+...+ .+.+. . +.+.+..++|+.++||++||
T Consensus 373 ~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD 452 (485)
T TIGR01317 373 ALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGD 452 (485)
T ss_pred EEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeec
Confidence 3332 1111111 1112468999999999953 22222211 22122 2 33556778999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHH
Q psy11185 149 TCVNVGCIPKKLMHQAALLGEAIKDA 174 (312)
Q Consensus 149 ~~~~~~~~~~~~~~~a~~~~~~~~~~ 174 (312)
++... .....+..+++....+
T Consensus 453 ~~~g~-----~~~~~Av~~G~~AA~~ 473 (485)
T TIGR01317 453 CRRGQ-----SLIVWAINEGRKAAAA 473 (485)
T ss_pred cCCCc-----HHHHHHHHHHHHHHHH
Confidence 65332 2334455555554443
No 180
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.34 E-value=1.5e-06 Score=79.12 Aligned_cols=146 Identities=19% Similarity=0.187 Sum_probs=77.5
Q ss_pred cEEEEecCcchHHHHHHH--HHCCCcEEEEeccCCCCCC--cccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185 105 DLLVLGGGSGGLAAAKEA--AAHGRKVIVLDYVIPSPQG--TTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE 180 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~--~~~~~~~~~ve~~~~~~~~--~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (312)
|+||||+|++|+.+|..+ ...+.+++++|+......+ ..|...+.. ...........+... ...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~---------~~~~~~~v~~~w~~~---~v~ 68 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKD---------LGPLDSLVSHRWSGW---RVY 68 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccccc---------ccchHHHHheecCce---EEE
Confidence 899999999999999999 6778889999986654222 233332210 000001111111100 000
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeC--CeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQ--HSVEATMKNGEKKTLTAENILIATGGRP 258 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~--~~~~v~~~~G~~~~i~ad~vVlAtG~~p 258 (312)
.+.......+ ..|.......|...+...+...++.++...+..++. ..+.+++.+| .++.|+.||.|+|..+
T Consensus 69 ~~~~~~~~~~----~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g--~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 69 FPDGSRILID----YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADG--RTIRARVVVDARGPSS 142 (374)
T ss_pred eCCCceEEcc----cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCC--CEEEeeEEEECCCccc
Confidence 1110000011 111111123344444455555667777766555543 3456788888 6999999999999655
Q ss_pred CCCCCCCCCc
Q psy11185 259 NYPDIPGAKE 268 (312)
Q Consensus 259 ~~p~~~g~~~ 268 (312)
....-.+.+.
T Consensus 143 ~~~~~~~~Q~ 152 (374)
T PF05834_consen 143 PKARPLGLQH 152 (374)
T ss_pred ccccccccce
Confidence 4333334443
No 181
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.34 E-value=6e-06 Score=78.24 Aligned_cols=38 Identities=32% Similarity=0.599 Sum_probs=34.1
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS 138 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~ 138 (312)
..++|+||||+|.+|+.+|..+.+.|.+++++|+....
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~ 96 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA 96 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 45899999999999999999999999999999987653
No 182
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.8e-06 Score=73.84 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=84.7
Q ss_pred hhhhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
-++|+|+|--|+.+-.+|||+|-...|+. |+-+ ++.|.. .+|++.+|..-+++..+++....+.+.+-.++..
T Consensus 363 GNSGvEAAIDLAGiv~hVtllEF~~eLkA-D~VL----q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~- 436 (520)
T COG3634 363 GNSGVEAAIDLAGIVEHVTLLEFAPELKA-DAVL----QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEE- 436 (520)
T ss_pred CcchHHHHHhHHhhhheeeeeecchhhhh-HHHH----HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCce-
Confidence 46899999999999999999998555564 4444 334433 5899999999999886555433566665443322
Q ss_pred CCccccccEEEEecCc----chHHHHHHHHHCCCc-EEEEeccCCCCCCcccccCCcc
Q psy11185 98 NTHKYDYDLLVLGGGS----GGLAAAKEAAAHGRK-VIVLDYVIPSPQGTTWGLGGTC 150 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~----~gl~~a~~~~~~~~~-~~~ve~~~~~~~~~v~a~Gd~~ 150 (312)
..++-+-|+|-.|. ..|.-+ .+...+ -|++|+...|+.|++||+|||.
T Consensus 437 --~~l~LeGvFVqIGL~PNT~WLkg~---vel~~rGEIivD~~g~TsvpGvFAAGD~T 489 (520)
T COG3634 437 --HHLELEGVFVQIGLLPNTEWLKGA---VELNRRGEIIVDARGETNVPGVFAAGDCT 489 (520)
T ss_pred --eEEEeeeeEEEEecccChhHhhch---hhcCcCccEEEecCCCcCCCceeecCccc
Confidence 34566778888884 233323 333333 3888999999999999999953
No 183
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.33 E-value=1.5e-06 Score=79.78 Aligned_cols=148 Identities=18% Similarity=0.224 Sum_probs=76.8
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPN 183 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 183 (312)
.|++|||+||+|+.+|..+.+.|.+++++|+..... ..+|+.... ........... +......+..+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~----~~cg~~i~~------~~l~~~g~~~~-~~~~~i~~~~~~~ 69 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA----KPCGGAIPL------CMVDEFALPRD-IIDRRVTKMKMIS 69 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC----CCccccccH------hhHhhccCchh-HHHhhhceeEEec
Confidence 489999999999999999999999999999864321 224543211 11100000000 1111000100000
Q ss_pred ccccccCHHH---HHHHH-HHHHHHhhHHHHHHHhcCCceEEeceeEEee-----CC--eEEEEecC-----CCeEEEEc
Q psy11185 184 VKSVQHNWAN---LREAV-QNHVKSVNWVTRVMLRDKKVDYLNALGKFID-----QH--SVEATMKN-----GEKKTLTA 247 (312)
Q Consensus 184 ~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~-----~~--~~~v~~~~-----G~~~~i~a 247 (312)
+....+++.. ...++ ......|...+...+...|+++..++..... .. .+++...+ |+..++.|
T Consensus 70 p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a 149 (398)
T TIGR02028 70 PSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV 149 (398)
T ss_pred CCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEe
Confidence 0001111110 00111 1123455555666777889999877644321 12 23333332 44468999
Q ss_pred CeEEEccCCCCCCCC
Q psy11185 248 ENILIATGGRPNYPD 262 (312)
Q Consensus 248 d~vVlAtG~~p~~p~ 262 (312)
+.||.|+|..+.+..
T Consensus 150 ~~VIgADG~~S~v~~ 164 (398)
T TIGR02028 150 DAVIGADGANSRVAK 164 (398)
T ss_pred CEEEECCCcchHHHH
Confidence 999999997666543
No 184
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=8.3e-06 Score=78.49 Aligned_cols=48 Identities=27% Similarity=0.374 Sum_probs=37.2
Q ss_pred ccccEEEEecCcchHHHHHHHHHCC--CcEEEEeccCCCCCCcccccCCc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVIPSPQGTTWGLGGT 149 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~~~~~~~v~a~Gd~ 149 (312)
+++|+||||+|.+|+.+|..+.+.+ .+|+++++.........++.|+.
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi 51 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGI 51 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccch
Confidence 4689999999999999999998764 68999998765444455555553
No 185
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.32 E-value=4e-06 Score=78.09 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=33.4
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
....+|++|||+||+|+.+|..+.+.|.+++++|+..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 4457899999999999999999999999999999864
No 186
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.32 E-value=1.2e-05 Score=76.80 Aligned_cols=49 Identities=35% Similarity=0.583 Sum_probs=38.7
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG 148 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd 148 (312)
...++|+||||+|.+|+.+|..+.+.+.+++++++.........++.|+
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Gg 61 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGG 61 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccc
Confidence 3568999999999999999999999899999999876543334444443
No 187
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.32 E-value=1e-05 Score=77.45 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=32.8
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
+++++|+||||+|.+|+.+|..+ +.+.+|+++|+...
T Consensus 4 ~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 4 EIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred ceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 46789999999999999999999 88889999998653
No 188
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.31 E-value=1e-05 Score=69.63 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=32.8
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..++|++|||+||+|+.+|..+.+.+.+++++|+..
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 457899999999999999999999999999999765
No 189
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.31 E-value=1.3e-05 Score=75.70 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=80.9
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc-------------------cchhhHHHH
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG-------------------CIPKKLMHQ 163 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~-------------------~~~~~~~~~ 163 (312)
++|+||||+|.+|+.+|..+.+.+. ++++++.........|+.|+.....+ +.+......
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 5799999999999999999998886 99999875544444555554322111 111111122
Q ss_pred HHHHHHHHHHHHHcCCccCCccccccC-----HHHHHHHHH---HHHHHhhHHHHHHHhc-CCceEEece-eEEe--eCC
Q psy11185 164 AALLGEAIKDAVAYGWEIPNVKSVQHN-----WANLREAVQ---NHVKSVNWVTRVMLRD-KKVDYLNAL-GKFI--DQH 231 (312)
Q Consensus 164 a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~-~gV~~~~~~-~~~~--~~~ 231 (312)
.......+.....+|..+.......+. ....++.+. .....+...+...+.. .+|+++..+ .... +..
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g 160 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG 160 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence 223333444444566554321110000 000000000 0011222334445555 689987665 3322 223
Q ss_pred eEE-EEec-CCCeEEEEcCeEEEccCCCCC
Q psy11185 232 SVE-ATMK-NGEKKTLTAENILIATGGRPN 259 (312)
Q Consensus 232 ~~~-v~~~-~G~~~~i~ad~vVlAtG~~p~ 259 (312)
.+. +... .++...+.++.||+|||+...
T Consensus 161 ~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 161 RVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred EEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 322 3222 243467899999999997654
No 190
>KOG1346|consensus
Probab=98.31 E-value=8.9e-07 Score=78.50 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=67.0
Q ss_pred hcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCc--------ceeccccccCCCC---
Q psy11185 214 RDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE--------HCISSDDIFSLEK--- 281 (312)
Q Consensus 214 ~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~--------~~~~~~~~~~~~~--- 281 (312)
.+-||-+.++. +..++...-.+.++|| .+|.||+++||||..|+..++..... +.+...++..+..
T Consensus 268 ~nGGvAvl~G~kvvkid~~d~~V~LnDG--~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~a 345 (659)
T KOG1346|consen 268 VNGGVAVLRGRKVVKIDEEDKKVILNDG--TTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLA 345 (659)
T ss_pred ccCceEEEeccceEEeecccCeEEecCC--cEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhh
Confidence 45678888876 5556655666788999 89999999999999999866543321 2345566655532
Q ss_pred CCCeEEEEcCchhhHHHHHHhhcCc
Q psy11185 282 PPGKTLVVGAGYIGKLETWDSNSGC 306 (312)
Q Consensus 282 ~~~~v~VvG~G~sa~~~a~~l~~~~ 306 (312)
-.++|.|||+|+.|.|.++.|...+
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~ 370 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKY 370 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhh
Confidence 3467999999999999888877653
No 191
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.30 E-value=1.4e-06 Score=80.00 Aligned_cols=41 Identities=29% Similarity=0.511 Sum_probs=35.9
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGT 142 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~ 142 (312)
.++|++|||+||+|+.+|..+.+.|.+++++|+......+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~ 42 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKP 42 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCc
Confidence 36899999999999999999999999999999977655544
No 192
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.30 E-value=4.5e-06 Score=76.42 Aligned_cols=134 Identities=22% Similarity=0.263 Sum_probs=72.2
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCC----c
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGW----E 180 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~ 180 (312)
|++|||+|++|+.+|..+.+.+.+++++|+......+..|...+ ....... . .... ... +.. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~---------~~~~~~~-~-~~~~-~~~-~~~~~~~~ 67 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWD---------DDLSDLG-L-ADCV-EHV-WPDVYEYR 67 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccH---------hhhhhhc-h-hhHH-hhc-CCCceEEe
Confidence 79999999999999999998899999999865432222221111 0000000 0 0000 000 100 0
Q ss_pred cCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee---CCeEEEEecCCCeEEEEcCeEEEccCCC
Q psy11185 181 IPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID---QHSVEATMKNGEKKTLTAENILIATGGR 257 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~---~~~~~v~~~~G~~~~i~ad~vVlAtG~~ 257 (312)
.+. .....++ .+.......+...+...+...++++..+.+.... ...+.+++.+| .++.|+.||+|+|..
T Consensus 68 ~~~-~~~~~~~----~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 68 FPK-QPRKLGT----AYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGG--QRIQARLVIDARGFG 140 (388)
T ss_pred cCC-cchhcCC----ceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCC--CEEEeCEEEECCCCc
Confidence 000 0000000 0000112334444445566668888766544433 34566777777 689999999999976
Q ss_pred C
Q psy11185 258 P 258 (312)
Q Consensus 258 p 258 (312)
+
T Consensus 141 s 141 (388)
T TIGR01790 141 P 141 (388)
T ss_pred h
Confidence 6
No 193
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.29 E-value=2.4e-05 Score=76.10 Aligned_cols=37 Identities=32% Similarity=0.478 Sum_probs=32.8
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
++.++|+||||+|.+|+.+|..+.+.|.+|+++++..
T Consensus 32 ~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 32 NKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4468999999999999999999999899999998744
No 194
>PLN02815 L-aspartate oxidase
Probab=98.28 E-value=1.3e-05 Score=77.11 Aligned_cols=48 Identities=33% Similarity=0.525 Sum_probs=38.6
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG 148 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd 148 (312)
.+.++|+||||+|.+|+.+|..+.+.+ +++++++.........|+.|+
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Gg 73 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGG 73 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcc
Confidence 567899999999999999999998888 899999876544444555554
No 195
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.26 E-value=1.5e-05 Score=74.83 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=77.4
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccc-------------------cchhhHHHHH
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG-------------------CIPKKLMHQA 164 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~-------------------~~~~~~~~~a 164 (312)
.|+||||+|.+|+.+|..+.+.+.+++++++... .....++.|+.+.... +.+.......
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~-~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK-KSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC-CCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4899999999999999999999999999998642 2223344443221100 0111111112
Q ss_pred HHHHHHHHHHHHcCCccCCccccccCHHHHHHHH---HHHHHHhhHHHHHHHhcCCceEEeceeEEe--eCCeE-EEEec
Q psy11185 165 ALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAV---QNHVKSVNWVTRVMLRDKKVDYLNALGKFI--DQHSV-EATMK 238 (312)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~--~~~~~-~v~~~ 238 (312)
......+.....+|..+.... ......+++.. ......+...+...+.+.+++++....... +...+ .+..
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~--~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~- 157 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNE--LEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL- 157 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCC--CcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-
Confidence 222233333344555443210 00000011000 000112333344556677888876553332 22233 2333
Q ss_pred CCCeEEEEcCeEEEccCCCCCC
Q psy11185 239 NGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 239 ~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
+| ..+.++.||+|||+++..
T Consensus 158 ~g--~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 158 DG--ELLKFDATVIATGGFSGL 177 (466)
T ss_pred CC--EEEEeCeEEECCCcCcCC
Confidence 45 478999999999976544
No 196
>PRK08275 putative oxidoreductase; Provisional
Probab=98.26 E-value=1.6e-05 Score=76.17 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=32.4
Q ss_pred ccccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIP 137 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~ 137 (312)
..+++|+||||+|.+|+.+|..+.+. +.+++++|+...
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 6 QEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred eeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 34679999999999999999999876 568999998764
No 197
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.22 E-value=2.5e-05 Score=75.18 Aligned_cols=44 Identities=39% Similarity=0.571 Sum_probs=35.0
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG 148 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd 148 (312)
|+||||+|.+|+.+|..+.+.|.+|+++|+.........++.|+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg 44 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGG 44 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccC
Confidence 79999999999999999999999999999865433333444444
No 198
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.21 E-value=3.9e-06 Score=73.49 Aligned_cols=34 Identities=35% Similarity=0.583 Sum_probs=31.1
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
+|++|||+|++|+.+|..+.+.+.+++++|+...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 5999999999999999999999999999998653
No 199
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.20 E-value=1.6e-06 Score=80.41 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=32.7
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS 138 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~ 138 (312)
.+|++|||+||+|+.+|..+.+.|.+++++|+....
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 589999999999999999999999999999986543
No 200
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.20 E-value=2.8e-05 Score=75.21 Aligned_cols=38 Identities=34% Similarity=0.497 Sum_probs=33.2
Q ss_pred ccccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIP 137 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~ 137 (312)
.++++|+||||+|.+|+.+|..+.+. |.+++++|+...
T Consensus 8 ~~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 8 VEVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred ceeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 34678999999999999999999887 889999998654
No 201
>PRK10015 oxidoreductase; Provisional
Probab=98.20 E-value=2.6e-06 Score=79.05 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=33.2
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS 138 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~ 138 (312)
.++|+||||+||+|+++|..+.+.|.+++++|+....
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 4689999999999999999999999999999986543
No 202
>PLN02697 lycopene epsilon cyclase
Probab=98.19 E-value=1.1e-05 Score=76.24 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=71.5
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEI 181 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 181 (312)
..+|++|||+||+|+++|..+.+.|.+++++|+..+.. +-|.+.... +. .. .........+..... .+
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~--~n~GvW~~~-----l~-~l-gl~~~i~~~w~~~~v---~~ 174 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT--NNYGVWEDE-----FK-DL-GLEDCIEHVWRDTIV---YL 174 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC--CccccchhH-----HH-hc-CcHHHHHhhcCCcEE---Ee
Confidence 45899999999999999999999999999998743221 112111100 00 00 000000001100000 00
Q ss_pred CCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEee--CCeEE-EEecCCCeEEEEcCeEEEccCCCC
Q psy11185 182 PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFID--QHSVE-ATMKNGEKKTLTAENILIATGGRP 258 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~--~~~~~-v~~~~G~~~~i~ad~vVlAtG~~p 258 (312)
+.......+ ..|.......+...+...+...|+++....+..+. ...+. +.+.+| .++.|+.||+|+|..+
T Consensus 175 ~~~~~~~~~----~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG--~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 175 DDDKPIMIG----RAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDG--RVIPCRLATVASGAAS 248 (529)
T ss_pred cCCceeecc----CcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCC--cEEECCEEEECCCcCh
Confidence 100000000 00111122344444555566678888666554443 23333 345666 6899999999999765
No 203
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.19 E-value=1.1e-05 Score=74.69 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=28.5
Q ss_pred cccEEEEecCcchHHHHHHHH-HCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAA-AHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~-~~~~~~~~ve~~~ 136 (312)
...++|||+||+|+.+|..+. ..+..+.++|+..
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 457999999999999998764 5678899999865
No 204
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.19 E-value=1.6e-05 Score=74.69 Aligned_cols=35 Identities=37% Similarity=0.541 Sum_probs=32.2
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.++|+||||+|.+|+.+|..+.+.|.+++++|+..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 36899999999999999999999999999999865
No 205
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.19 E-value=2.3e-05 Score=67.27 Aligned_cols=37 Identities=35% Similarity=0.530 Sum_probs=33.5
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
..++|++|||+|++|+.+|..+.+.+.+++++|+...
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4578999999999999999999999999999998754
No 206
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.18 E-value=4.8e-05 Score=73.38 Aligned_cols=47 Identities=30% Similarity=0.420 Sum_probs=37.6
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT 149 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~ 149 (312)
.+|+||||+|.+|+.+|..+.+.|.+++++++.........++.|+.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi 49 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGI 49 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCe
Confidence 45999999999999999999999999999998765444445555543
No 207
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.18 E-value=2.1e-05 Score=74.84 Aligned_cols=33 Identities=42% Similarity=0.699 Sum_probs=30.9
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
++|+||||+|++|+.+|..+.+.|.++.+++..
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 689999999999999999999999999999875
No 208
>KOG2755|consensus
Probab=98.18 E-value=3.8e-05 Score=64.38 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=52.0
Q ss_pred CeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCCCccee---ccccccCCC---CCCCeEEEEcCchhhHHHHHHhhc
Q psy11185 231 HSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI---SSDDIFSLE---KPPGKTLVVGAGYIGKLETWDSNS 304 (312)
Q Consensus 231 ~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~~~~~~---~~~~~~~~~---~~~~~v~VvG~G~sa~~~a~~l~~ 304 (312)
..-.+++.+| .++.|++|++|||++|.. ..+|....+. +++....++ ...|.|+|+|.|-+|+|.++++..
T Consensus 79 ~ehci~t~~g--~~~ky~kKOG~tg~kPkl-q~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~ 155 (334)
T KOG2755|consen 79 SEHCIHTQNG--EKLKYFKLCLCTGYKPKL-QVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKI 155 (334)
T ss_pred ccceEEecCC--ceeeEEEEEEecCCCcce-eecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhc
Confidence 3456788899 789999999999999986 3454433332 333333222 356789999999999999988765
Q ss_pred C
Q psy11185 305 G 305 (312)
Q Consensus 305 ~ 305 (312)
.
T Consensus 156 ~ 156 (334)
T KOG2755|consen 156 L 156 (334)
T ss_pred c
Confidence 4
No 209
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.18 E-value=2.5e-05 Score=72.56 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=36.9
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTC 150 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~ 150 (312)
.++|+||||+|.+|+.+|..+. .+.+++++|+.........++.|+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~ 50 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGIS 50 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhhe
Confidence 4689999999999999998874 68899999987654444455555443
No 210
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.17 E-value=4e-05 Score=72.68 Aligned_cols=46 Identities=24% Similarity=0.412 Sum_probs=36.3
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT 149 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~ 149 (312)
++|+||||+|.+|+.+|..+.+ +.+|+++++.........|+.|..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi 48 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGI 48 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccc
Confidence 6899999999999999998865 789999998765444445566543
No 211
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.16 E-value=1.7e-05 Score=73.87 Aligned_cols=34 Identities=35% Similarity=0.543 Sum_probs=30.9
Q ss_pred cEEEEecCcchHHHHHHHHHCC-CcEEEEeccCCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIPS 138 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~~~ 138 (312)
|+||||+|.+|+.+|..+.+.| .+++++|+....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 7999999999999999999999 899999986543
No 212
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.16 E-value=1.7e-05 Score=73.41 Aligned_cols=33 Identities=48% Similarity=0.695 Sum_probs=29.2
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
|+||||+|.+|+.+|..+.+.|.+|+++|+...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 899999999999999999999999999998765
No 213
>PRK06834 hypothetical protein; Provisional
Probab=98.15 E-value=2.8e-05 Score=73.30 Aligned_cols=146 Identities=17% Similarity=0.186 Sum_probs=75.3
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCC--CcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQ--GTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWE 180 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~--~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (312)
++|++|||+||+|+.+|..|.+.|.+++++|+...... +...++. +...... .....+......+..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~---------~~s~~~L--~~lGl~~~l~~~~~~ 71 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLH---------ARTLEVL--DQRGIADRFLAQGQV 71 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeEC---------HHHHHHH--HHcCcHHHHHhcCCc
Confidence 47999999999999999999999999999997653211 1111110 0000000 000000000000000
Q ss_pred cC--CccccccCHHHHHH---HHH-HHHHHhhHHHHHHHhcCCceEEece-eEEe--eCCeEEEEecCCCeEEEEcCeEE
Q psy11185 181 IP--NVKSVQHNWANLRE---AVQ-NHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQHSVEATMKNGEKKTLTAENIL 251 (312)
Q Consensus 181 ~~--~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~~~~~v~~~~G~~~~i~ad~vV 251 (312)
.. ......+++..+.. +.. .....+...+...++..++++..++ ...+ +...+.++..+| .++.+|+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g--~~i~a~~vV 149 (488)
T PRK06834 72 AQVTGFAATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDG--RTLRAQYLV 149 (488)
T ss_pred cccceeeeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCC--CEEEeCEEE
Confidence 00 00000111111000 000 0012344445566667788887665 3222 345677777777 589999999
Q ss_pred EccCCCCCCC
Q psy11185 252 IATGGRPNYP 261 (312)
Q Consensus 252 lAtG~~p~~p 261 (312)
.|+|..+.+.
T Consensus 150 gADG~~S~vR 159 (488)
T PRK06834 150 GCDGGRSLVR 159 (488)
T ss_pred EecCCCCCcH
Confidence 9999877663
No 214
>PRK06847 hypothetical protein; Provisional
Probab=98.14 E-value=1.6e-05 Score=72.36 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=30.8
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..|++|||+|++|+.+|..|.+.|.+++++|...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3589999999999999999999999999999754
No 215
>KOG1800|consensus
Probab=98.13 E-value=2.1e-05 Score=69.32 Aligned_cols=143 Identities=18% Similarity=0.294 Sum_probs=83.2
Q ss_pred cEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIP 182 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 182 (312)
.+.|||+||+|+.+|..+++. +..+.++|+.... ++ ...||
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP--------FG-------------------------LvRyG---- 64 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP--------FG-------------------------LVRYG---- 64 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc--------cc-------------------------eeeec----
Confidence 789999999999999998874 3467788874421 00 00122
Q ss_pred CccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCC-CCCCC
Q psy11185 183 NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGG-RPNYP 261 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~-~p~~p 261 (312)
..+|.+++...+.+.... +++....+.-.-.. ...+.+.. -+-.||+||||.|+ .++.+
T Consensus 65 ----VAPDHpEvKnvintFt~~--------aE~~rfsf~gNv~v---G~dvsl~e-----L~~~ydavvLaYGa~~dR~L 124 (468)
T KOG1800|consen 65 ----VAPDHPEVKNVINTFTKT--------AEHERFSFFGNVKV---GRDVSLKE-----LTDNYDAVVLAYGADGDRRL 124 (468)
T ss_pred ----cCCCCcchhhHHHHHHHH--------hhccceEEEeccee---cccccHHH-----HhhcccEEEEEecCCCCccc
Confidence 334556666555444322 23333333322110 01122211 23359999999996 57789
Q ss_pred CCCCCCcce-eccccc------------cCCCCCCCeEEEEcCchhhHHHHHHhhc
Q psy11185 262 DIPGAKEHC-ISSDDI------------FSLEKPPGKTLVVGAGYIGKLETWDSNS 304 (312)
Q Consensus 262 ~~~g~~~~~-~~~~~~------------~~~~~~~~~v~VvG~G~sa~~~a~~l~~ 304 (312)
++||.+..+ +..+.+ ..+.....+|+|||.|+.|+++|.-|..
T Consensus 125 ~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 125 DIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred CCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhC
Confidence 999997431 111111 1223335679999999999987776543
No 216
>PRK11445 putative oxidoreductase; Provisional
Probab=98.12 E-value=3.5e-05 Score=69.62 Aligned_cols=33 Identities=36% Similarity=0.499 Sum_probs=29.8
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
+|++|||+||+|+.+|..+.+. .+++++|+...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 6999999999999999999888 89999997653
No 217
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.11 E-value=7.3e-05 Score=71.42 Aligned_cols=48 Identities=35% Similarity=0.515 Sum_probs=37.5
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCc
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT 149 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~ 149 (312)
.+++|+||||+|.+|+.+|..+.+. .+|+++++.........|+.|..
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi 53 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGI 53 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCe
Confidence 5678999999999999999998875 78999998765444445565543
No 218
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.09 E-value=5.3e-05 Score=78.52 Aligned_cols=38 Identities=37% Similarity=0.515 Sum_probs=34.7
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
++.++|+||||+|.+|+.+|..+.+.|.+++++|+...
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK 443 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 57789999999999999999999999999999998654
No 219
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.09 E-value=6.6e-05 Score=69.05 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=28.8
Q ss_pred EEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS 138 (312)
Q Consensus 107 vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~ 138 (312)
+|||+|++|+.+|..+.+.+.+++++|+....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence 68999999999999999999999999987653
No 220
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.07 E-value=0.0004 Score=64.97 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhccceE--EEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 50 QQMAKLICEEMAEGGVH--FLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~--~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
.++.+|+++..++.|++ ++++++|++++... +...|...++... ..+..+|.||+++|.
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~-~~w~V~~~~~~~~----~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD-GKWRVQSKNSGGF----SKDEIFDAVVVCNGH 171 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC-CeEEEEEEcCCCc----eEEEEcCEEEEeccC
Confidence 57888999988888888 88999999998643 3345555432110 023467888888883
No 221
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.07 E-value=5.9e-05 Score=71.62 Aligned_cols=49 Identities=31% Similarity=0.451 Sum_probs=36.7
Q ss_pred CccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC-CCCCcccccCCc
Q psy11185 99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP-SPQGTTWGLGGT 149 (312)
Q Consensus 99 ~~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~-~~~~~v~a~Gd~ 149 (312)
+.++++|+||||+|.+|+.+|..+. +.+++++++... ......|+.|..
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi 54 (513)
T PRK07512 5 LRILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGI 54 (513)
T ss_pred ccCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhcc
Confidence 3578899999999999999998876 458999998764 232345555543
No 222
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.07 E-value=0.00012 Score=74.21 Aligned_cols=38 Identities=42% Similarity=0.676 Sum_probs=33.8
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
..+++|+||||+|.+|+.+|..+.+.|.+++++++...
T Consensus 10 ~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 10 LRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 45689999999999999999999988999999998654
No 223
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.06 E-value=4.5e-05 Score=68.84 Aligned_cols=129 Identities=23% Similarity=0.409 Sum_probs=67.6
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchh-------hHHHHHHHHHH-H--HHHH
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPK-------KLMHQAALLGE-A--IKDA 174 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~-------~~~~~a~~~~~-~--~~~~ 174 (312)
|++|||+|.+|+++|..+++.|.++.++..... .+...+|.|. .+.......+. . +.+.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d-----------~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~ 69 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTD-----------TIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADE 69 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GG-----------GTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccc-----------ccccccchhhhccccccchhHHHhhhhhHHHHHHhH
Confidence 799999999999999999999999988732211 1111111111 11111111111 1 1111
Q ss_pred HHcCCcc------CCccc--cccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEe--eC-CeEEEEecCCCeE
Q psy11185 175 VAYGWEI------PNVKS--VQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFI--DQ-HSVEATMKNGEKK 243 (312)
Q Consensus 175 ~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~--~~-~~~~v~~~~G~~~ 243 (312)
....+.. +.... ...|...+..++.... ....+++++++.+..+ +. ....|.+.+| .
T Consensus 70 ~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l----------~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--~ 137 (392)
T PF01134_consen 70 TGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKL----------ESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--E 137 (392)
T ss_dssp HEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHH----------HTSTTEEEEES-EEEEEECTTEEEEEEETTS--E
T ss_pred hhhhhhcccccCCCCccchHhhccHHHHHHHHHHHH----------hcCCCeEEEEcccceEEecCCeEEEEEeCCC--C
Confidence 1110010 00011 2456666666653332 2346899988776544 23 3455788888 7
Q ss_pred EEEcCeEEEccCC
Q psy11185 244 TLTAENILIATGG 256 (312)
Q Consensus 244 ~i~ad~vVlAtG~ 256 (312)
.+.+|.||+|||.
T Consensus 138 ~~~a~~vVlaTGt 150 (392)
T PF01134_consen 138 EIEADAVVLATGT 150 (392)
T ss_dssp EEEECEEEE-TTT
T ss_pred EEecCEEEEeccc
Confidence 9999999999997
No 224
>PRK07190 hypothetical protein; Provisional
Probab=98.04 E-value=2.8e-05 Score=73.29 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=32.2
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
..+|++|||+||+|+.+|..+.+.|.+++++|+...
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 457999999999999999999999999999998653
No 225
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.03 E-value=0.00023 Score=63.92 Aligned_cols=32 Identities=34% Similarity=0.560 Sum_probs=30.3
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
|++|||+|..|+.+|..|.+.|.+|+++|+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 79999999999999999999999999999873
No 226
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.03 E-value=2.5e-05 Score=71.46 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.1
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
.+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 57999999999999999999999999999998654
No 227
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.02 E-value=5.2e-05 Score=69.26 Aligned_cols=150 Identities=21% Similarity=0.243 Sum_probs=84.8
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccc-------------------hhhHHHHHH
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI-------------------PKKLMHQAA 165 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~-------------------~~~~~~~a~ 165 (312)
|++|||+|.+||.+|..+.+. .+++++.+.........||.|+..+..+.. .........
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999888765 789999887766667789999876554322 122222223
Q ss_pred HHHHHHHHHHHcCCccCCcccc--ccCHHHHHHHH-------HHHHHHhhHHHHHHH-hcCCceEEece-eE--EeeCC-
Q psy11185 166 LLGEAIKDAVAYGWEIPNVKSV--QHNWANLREAV-------QNHVKSVNWVTRVML-RDKKVDYLNAL-GK--FIDQH- 231 (312)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~gV~~~~~~-~~--~~~~~- 231 (312)
.....+.+...+|..|...... ....+.-.+.. .+-...+. .+...+ +..+|+++++. .. ..+..
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~-~L~~~v~~~p~I~v~e~~~a~~li~~~~~ 166 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMT-ALLKKVRNRPNITVLEGAEALDLIIEDGI 166 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHH-HHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence 3444455556677666442221 11111100000 00001111 122333 34789998885 22 12222
Q ss_pred eE---EEEecCCCeEEEEcCeEEEccCC
Q psy11185 232 SV---EATMKNGEKKTLTAENILIATGG 256 (312)
Q Consensus 232 ~~---~v~~~~G~~~~i~ad~vVlAtG~ 256 (312)
.+ .+...+++...+.++.||+|||+
T Consensus 167 ~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 167 GVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred eEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 22 22223234678999999999995
No 228
>PRK07121 hypothetical protein; Validated
Probab=98.02 E-value=9.7e-05 Score=69.91 Aligned_cols=37 Identities=41% Similarity=0.548 Sum_probs=33.5
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
..++|+||||+|.+|+.+|..+.+.|.+|+++|+...
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3579999999999999999999999999999998654
No 229
>KOG0399|consensus
Probab=98.02 E-value=1.1e-05 Score=79.53 Aligned_cols=125 Identities=24% Similarity=0.292 Sum_probs=78.8
Q ss_pred hhhhhhhHhhhccCCeEEEEEcc-CC---C----cc--chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRS-VP---L----RG--FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK 89 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~-~~---l----~~--~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~ 89 (312)
..|+.+|..|.+.|+.||++||+ ++ | |. .|+-+.++-...|.++||+|.+|+.+-+-.. +
T Consensus 1795 paglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs---------~- 1864 (2142)
T KOG0399|consen 1795 PAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVS---------L- 1864 (2142)
T ss_pred chhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccccc---------H-
Confidence 46899999999999999999994 54 2 22 5888999999999999999999987654211 1
Q ss_pred eccccccCCCccccccEEEEecCc-------------chHHHHHHHHHCCCcEEEEec----cCCCCCCcccccCCcccc
Q psy11185 90 NVAEVRQDNTHKYDYDLLVLGGGS-------------GGLAAAKEAAAHGRKVIVLDY----VIPSPQGTTWGLGGTCVN 152 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~d~vivg~G~-------------~gl~~a~~~~~~~~~~~~ve~----~~~~~~~~v~a~Gd~~~~ 152 (312)
++ ...+.|.||++.|. .|...|..+...+.+-+.... ........+..+|+--+.
T Consensus 1865 d~--------l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg 1936 (2142)
T KOG0399|consen 1865 DE--------LKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTG 1936 (2142)
T ss_pred HH--------HhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCcc
Confidence 00 12245666666662 577777766554332211111 112233455555554556
Q ss_pred cccchhhHHH
Q psy11185 153 VGCIPKKLMH 162 (312)
Q Consensus 153 ~~~~~~~~~~ 162 (312)
..|+.+...|
T Consensus 1937 ~dcigtsvrh 1946 (2142)
T KOG0399|consen 1937 TDCIGTSVRH 1946 (2142)
T ss_pred ccccccchhh
Confidence 6665554444
No 230
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.01 E-value=5.1e-05 Score=72.57 Aligned_cols=48 Identities=27% Similarity=0.438 Sum_probs=37.1
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG 148 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd 148 (312)
.+.++|+||||+|.+|+.+|..+. .+.+|+++++.........++.|.
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Gg 53 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGG 53 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhccc
Confidence 356899999999999999998885 478999999876544444455554
No 231
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.00 E-value=1.7e-05 Score=64.85 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=32.8
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..+.|++|+|+||+||.+|..+.+.+.++.++|+..
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l 63 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL 63 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence 347899999999999999999999999999999754
No 232
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.00 E-value=0.00015 Score=70.20 Aligned_cols=43 Identities=33% Similarity=0.461 Sum_probs=34.1
Q ss_pred EEEEecCcchHHHHHHHHHCCCcEEEEeccC-CCCCCcccccCC
Q psy11185 106 LLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI-PSPQGTTWGLGG 148 (312)
Q Consensus 106 ~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~-~~~~~~v~a~Gd 148 (312)
+||||+|.+|+.+|..+.+.|.+|+++++.. ......+++.|+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Gg 44 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGG 44 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhh
Confidence 5899999999999999999899999999876 322344566554
No 233
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.99 E-value=4.2e-05 Score=70.16 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=32.6
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
...+|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 346899999999999999999999999999999864
No 234
>PRK06184 hypothetical protein; Provisional
Probab=97.99 E-value=4.2e-05 Score=72.55 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=32.0
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
++|++|||+||+|+.+|..|.+.|.+++++|+...
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 47999999999999999999999999999998653
No 235
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.98 E-value=0.00014 Score=69.38 Aligned_cols=32 Identities=41% Similarity=0.698 Sum_probs=29.5
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
+|++|||+|++|+.+|..+.+.+.++.+++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 59999999999999999999999999988865
No 236
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.98 E-value=4.1e-05 Score=70.09 Aligned_cols=37 Identities=41% Similarity=0.539 Sum_probs=32.8
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
...+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 3467999999999999999999999999999998654
No 237
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.96 E-value=0.00047 Score=63.33 Aligned_cols=34 Identities=32% Similarity=0.622 Sum_probs=30.8
Q ss_pred cccEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~ 136 (312)
.+|++|||+|..|+++|..|.+. +.+++++|+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 37999999999999999999988 88999999864
No 238
>PRK08244 hypothetical protein; Provisional
Probab=97.94 E-value=5.7e-05 Score=71.51 Aligned_cols=35 Identities=34% Similarity=0.623 Sum_probs=32.0
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
++|++|||+||+|+.+|..|.+.|.+++++|+...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47999999999999999999999999999998653
No 239
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.93 E-value=6.3e-05 Score=69.49 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=34.1
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
....+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 45578999999999999999999999999999998654
No 240
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.92 E-value=0.0002 Score=68.63 Aligned_cols=36 Identities=36% Similarity=0.486 Sum_probs=32.1
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
..++|+||||+| +|+.+|..+.+.|.+++++|+...
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~ 49 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSY 49 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 458999999999 899999999999999999998643
No 241
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.91 E-value=1.4e-05 Score=71.80 Aligned_cols=36 Identities=33% Similarity=0.558 Sum_probs=30.6
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS 138 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~ 138 (312)
++|++|||+|++|+.+|..|.+.|.+++++|+....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 479999999999999999999999999999986543
No 242
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.88 E-value=9.8e-05 Score=70.67 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=32.7
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
...+|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 446899999999999999999999999999999865
No 243
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.88 E-value=0.00022 Score=72.97 Aligned_cols=115 Identities=15% Similarity=0.042 Sum_probs=74.9
Q ss_pred hhhhhhhHhhhccCC-eEEEEEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccC
Q psy11185 20 DSGLECAGFLNGLGF-NATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQD 97 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~-~vtl~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~ 97 (312)
++|+|+|..|++.|. .|+|+++. .+. ..+.+.|++.||++++++.+.++..++ ....|.+.....
T Consensus 327 ~~g~e~A~~L~~~G~~vV~vv~~~~~~~--------~~l~~~L~~~GV~i~~~~~v~~i~g~~-~v~~V~l~~~~g---- 393 (985)
T TIGR01372 327 DSAYRAAADLLAAGIAVVAIIDARADVS--------PEARAEARELGIEVLTGHVVAATEGGK-RVSGVAVARNGG---- 393 (985)
T ss_pred HHHHHHHHHHHHcCCceEEEEccCcchh--------HHHHHHHHHcCCEEEcCCeEEEEecCC-cEEEEEEEecCC----
Confidence 589999999999995 68899874 332 234567888999999999999987432 212455542100
Q ss_pred CCccccccEEEEecCcch-HHHHHHHHHCCCcEEEEec----cCCCCCCcccccCCcc
Q psy11185 98 NTHKYDYDLLVLGGGSGG-LAAAKEAAAHGRKVIVLDY----VIPSPQGTTWGLGGTC 150 (312)
Q Consensus 98 ~~~~~~~d~vivg~G~~g-l~~a~~~~~~~~~~~~ve~----~~~~~~~~v~a~Gd~~ 150 (312)
....+++|.|+++.|... ..++..+ +.++...+. ...|+.+++|++||++
T Consensus 394 ~~~~i~~D~V~va~G~~Pnt~L~~~l---g~~~~~~~~~~~~~~~t~v~gVyaaGD~~ 448 (985)
T TIGR01372 394 AGQRLEADALAVSGGWTPVVHLFSQR---GGKLAWDAAIAAFLPGDAVQGCILAGAAN 448 (985)
T ss_pred ceEEEECCEEEEcCCcCchhHHHHhc---CCCeeeccccCceecCCCCCCeEEeeccC
Confidence 115689999999999633 3333222 222221111 1247789999999954
No 244
>PRK06126 hypothetical protein; Provisional
Probab=97.88 E-value=0.00014 Score=69.73 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=33.6
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
...++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4567899999999999999999999999999999764
No 245
>PRK09126 hypothetical protein; Provisional
Probab=97.88 E-value=0.0002 Score=65.70 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=32.1
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
++|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 57999999999999999999999999999998653
No 246
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.87 E-value=2.5e-05 Score=72.52 Aligned_cols=141 Identities=26% Similarity=0.264 Sum_probs=31.9
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccccccchhhHHHHHHHHHHHHHHHHHcCCccCCc
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNV 184 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 184 (312)
|+||||+|++|+.+|..+++.|.+++++|+... .++....|..+...+..... .................+.. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~--lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~-~-- 74 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGF--LGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGY-P-- 74 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSS--STGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCcc--CCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccc-c--
Confidence 799999999999999999999999999997543 22222222211111111000 01111111111111110000 0
Q ss_pred cccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEece-eEEe--eC---CeEEEEecCCCeEEEEcCeEEEccC
Q psy11185 185 KSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL-GKFI--DQ---HSVEATMKNGEKKTLTAENILIATG 255 (312)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~-~~~~--~~---~~~~v~~~~G~~~~i~ad~vVlAtG 255 (312)
.. +...........+..+...+...+.+.|++++..+ .... +. ..+.+.+.+| ..++.|+.+|.|||
T Consensus 75 --~~-~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 75 --QE-DRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDATG 147 (428)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred --cc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 00 00000000122233444555566677888886655 2221 22 2244444445 68999999999999
No 247
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.87 E-value=0.00014 Score=66.76 Aligned_cols=35 Identities=37% Similarity=0.462 Sum_probs=31.9
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
-++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 46899999999999999999999999999999754
No 248
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.87 E-value=0.00052 Score=65.46 Aligned_cols=52 Identities=38% Similarity=0.537 Sum_probs=43.8
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCccc
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCV 151 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~ 151 (312)
...++|+||||+|.+|+.+|..+.+.+.+++++++........+.+.|+...
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a 54 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINA 54 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccc
Confidence 4568999999999999999999999999999999988776666666666543
No 249
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.82 E-value=7.7e-05 Score=67.87 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=32.1
Q ss_pred cEEEEecCcchHHHHHHHHHC--CCcEEEEeccCCCCCCccc
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTW 144 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~~~~~~~v~ 144 (312)
|++|||+|++|+++|..+.+. +.+++++|+.........|
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw 42 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTW 42 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccc
Confidence 799999999999999999876 8899999986543333444
No 250
>PLN02661 Putative thiazole synthesis
Probab=97.81 E-value=0.00033 Score=62.46 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=31.8
Q ss_pred ccccccEEEEecCcchHHHHHHHHHC-CCcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~ 136 (312)
...++|++|||+|++|+.+|..+.+. +.+++++|+..
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 45678999999999999999999865 77899999754
No 251
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.81 E-value=0.00045 Score=66.32 Aligned_cols=35 Identities=43% Similarity=0.667 Sum_probs=32.6
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.++|+||||+|.+|+.+|..+.+.+.+++++|+..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57899999999999999999999999999999866
No 252
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.80 E-value=0.00041 Score=67.06 Aligned_cols=42 Identities=38% Similarity=0.624 Sum_probs=32.6
Q ss_pred cEEEEecCcchHHHHHHHH----HCCCcEEEEeccCCCCCCcccccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAA----AHGRKVIVLDYVIPSPQGTTWGLG 147 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~----~~~~~~~~ve~~~~~~~~~v~a~G 147 (312)
|+||||+|.+|+.+|..+. +.|.+|+++++....... .++.|
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~-s~A~G 46 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSG-AVAQG 46 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCC-ccccc
Confidence 7999999999999999887 567799999986543322 24555
No 253
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.79 E-value=0.00037 Score=67.24 Aligned_cols=38 Identities=37% Similarity=0.569 Sum_probs=33.8
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS 138 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~ 138 (312)
..++|+||||+|.+|+.+|..+.+.+.+++++|+....
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 35789999999999999999999999999999986543
No 254
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.78 E-value=0.00015 Score=66.07 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=30.7
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 789999999999999999999999999998764
No 255
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.78 E-value=0.00013 Score=67.16 Aligned_cols=34 Identities=35% Similarity=0.407 Sum_probs=31.1
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.+|++|||+|++|+++|..|.+.|.+++++|+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 4799999999999999999999999999999764
No 256
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.77 E-value=0.00014 Score=66.61 Aligned_cols=34 Identities=41% Similarity=0.556 Sum_probs=31.1
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.+|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3799999999999999999999999999999754
No 257
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.77 E-value=2.9e-05 Score=71.40 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=29.7
Q ss_pred ccEEEEecCcchHHHHHHHHHCC--CcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~ 136 (312)
+|++|||+|++|+.+|..|.+.| .+++++|+..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 69999999999999999999875 7899999865
No 258
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.74 E-value=0.0019 Score=58.56 Aligned_cols=33 Identities=42% Similarity=0.613 Sum_probs=30.5
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
+|++|||+|..|+++|..|.+.+.+++++|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999864
No 259
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.74 E-value=0.00073 Score=63.44 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=52.1
Q ss_pred cceEEEeeceeeEEEEc--CCCee-EEEEeecc------ccc-----cCCCccccccEEEEecCcchHHHHHH-------
Q psy11185 63 GGVHFLHKCLPLSVTKL--ADGKL-KVQYKNVA------EVR-----QDNTHKYDYDLLVLGGGSGGLAAAKE------- 121 (312)
Q Consensus 63 ~gi~~~~~~~v~~~~~~--~~~~~-~v~~~~~~------~~~-----~~~~~~~~~d~vivg~G~~gl~~a~~------- 121 (312)
++|.|++...+.++... +++.+ .+.+.... .++ .+...++++|.||++.|..+..+...
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~g 367 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRG 367 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcC
Confidence 58999999999999742 22333 34443110 011 11224689999999999753111110
Q ss_pred HHHCCCcEEEEeccCCCCCCcccccCCcccc
Q psy11185 122 AAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN 152 (312)
Q Consensus 122 ~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~ 152 (312)
........+.++...+|+.|++|++||+...
T Consensus 368 v~~n~~G~V~~d~~~~T~ipGvyAaGDi~~G 398 (491)
T PLN02852 368 VVPNVHGRVLSSASGADTEPGLYVVGWLKRG 398 (491)
T ss_pred eeECCCceEEeCCCCccCCCCEEEeeeEecC
Confidence 1111112244555567999999999997654
No 260
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.74 E-value=0.0002 Score=59.01 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=77.6
Q ss_pred hhhhhhhHhhhccCCeEEEEEccCCC----cc-----------chHHHH--H--HHHHHHhccceEEEeeceeeEEEEcC
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRSVPL----RG-----------FDQQMA--K--LICEEMAEGGVHFLHKCLPLSVTKLA 80 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~~~l----~~-----------~~~~~~--~--~~~~~l~~~gi~~~~~~~v~~~~~~~ 80 (312)
..|+.+|..|++.+.+|+|+++.... .. ...... + .+.+++...++++++++++.++....
T Consensus 9 ~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~ 88 (201)
T PF07992_consen 9 PAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAKVVSIDPES 88 (201)
T ss_dssp HHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHTEEEEEEST
T ss_pred HHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccccccccccc
Confidence 46899999999999999999873211 00 011111 1 44455677899999999999987643
Q ss_pred CCe----eEEEE-eeccccccCCCccccccEEEEecCc-------chH---------HHHHHHH----------------
Q psy11185 81 DGK----LKVQY-KNVAEVRQDNTHKYDYDLLVLGGGS-------GGL---------AAAKEAA---------------- 123 (312)
Q Consensus 81 ~~~----~~v~~-~~~~~~~~~~~~~~~~d~vivg~G~-------~gl---------~~a~~~~---------------- 123 (312)
... ..+.. ..++ ..++.+|.+|++.|. .|. ..+..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~------~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~~ 162 (201)
T PF07992_consen 89 KRVVCPAVTIQVVETGD------GREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGTEF 162 (201)
T ss_dssp TEEEETCEEEEEEETTT------EEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEESTTT
T ss_pred cccccCcccceeeccCC------ceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccccc
Confidence 310 11211 1111 157889999999993 221 1111111
Q ss_pred -------HCCC-cEEEEeccCCCCCCcccccCCcccc
Q psy11185 124 -------AHGR-KVIVLDYVIPSPQGTTWGLGGTCVN 152 (312)
Q Consensus 124 -------~~~~-~~~~ve~~~~~~~~~v~a~Gd~~~~ 152 (312)
+.+. ..+.+++.++++.++||++||++..
T Consensus 163 l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 163 LAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGI 199 (201)
T ss_dssp STHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEE
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 1111 2367788889999999999997643
No 261
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.72 E-value=0.001 Score=64.28 Aligned_cols=38 Identities=39% Similarity=0.587 Sum_probs=34.2
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
.+.++|+||||+|.+|+++|..+.+.+.+++++|+...
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~ 43 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV 43 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 45689999999999999999999999999999998654
No 262
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.71 E-value=0.00028 Score=64.76 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=32.0
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
.+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 46999999999999999999999999999998654
No 263
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.71 E-value=0.0003 Score=64.52 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=32.0
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
.+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 46999999999999999999999999999998654
No 264
>PRK08013 oxidoreductase; Provisional
Probab=97.71 E-value=0.00019 Score=66.10 Aligned_cols=35 Identities=37% Similarity=0.594 Sum_probs=31.9
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
++|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 47999999999999999999999999999998654
No 265
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.70 E-value=0.0014 Score=61.52 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=32.5
Q ss_pred ccccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~ 136 (312)
...++|++|||+|..|+++|..|.+. +.+|+++|...
T Consensus 21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 35678999999999999999999987 77999999754
No 266
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.67 E-value=0.00036 Score=57.42 Aligned_cols=36 Identities=36% Similarity=0.582 Sum_probs=30.2
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..++|++|+|+||+|+.+|..|.+.+.++.++|+..
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~ 50 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKL 50 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSS
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCC
Confidence 457999999999999999999999999999999864
No 267
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.67 E-value=5.3e-05 Score=69.41 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=31.1
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
..|++|+|+|++|+.+|..|.+.|.++.++|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 469999999999999999999999999999986
No 268
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.67 E-value=0.0013 Score=62.58 Aligned_cols=35 Identities=37% Similarity=0.522 Sum_probs=31.8
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
.++|+||||+| +|+++|..+.+.|.+|+++|+...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 47899999999 999999999999999999997654
No 269
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.67 E-value=0.00018 Score=65.69 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=30.4
Q ss_pred cEEEEecCcchHHHHHHHHHCC-CcEEEEeccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVIP 137 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~~ 137 (312)
|++|||+|++|+.+|..|.+.| .+++++|+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 7899999999999999999999 99999998653
No 270
>PRK12839 hypothetical protein; Provisional
Probab=97.66 E-value=0.0011 Score=63.90 Aligned_cols=38 Identities=42% Similarity=0.656 Sum_probs=33.7
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
.+.++|++|||+|.+|+.+|..+.+.+.+++++|+...
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~ 42 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST 42 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 45689999999999999999999999999999998643
No 271
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.66 E-value=0.00018 Score=67.10 Aligned_cols=32 Identities=41% Similarity=0.704 Sum_probs=29.3
Q ss_pred ccEEEEecCcchHHHHHHHHH----CCCcEEEEecc
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAA----HGRKVIVLDYV 135 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~----~~~~~~~ve~~ 135 (312)
+|++|||+|++|+.+|..|.+ .|.+++++|+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 699999999999999999987 68899999984
No 272
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.65 E-value=0.00055 Score=62.82 Aligned_cols=35 Identities=43% Similarity=0.587 Sum_probs=31.8
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
+.|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 56999999999999999999999999999998653
No 273
>PRK07588 hypothetical protein; Provisional
Probab=97.63 E-value=0.00026 Score=64.88 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=30.3
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 789999999999999999999999999998643
No 274
>PLN02985 squalene monooxygenase
Probab=97.61 E-value=0.00013 Score=69.28 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=33.1
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
....+|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3457899999999999999999999999999999754
No 275
>PRK06753 hypothetical protein; Provisional
Probab=97.61 E-value=0.00033 Score=63.78 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=30.4
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
+++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 789999999999999999999999999998653
No 276
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.61 E-value=0.0003 Score=64.19 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=30.0
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
+|++|||+|++|+.+|..|.+.|.+++++|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 58999999999999999999999999999975
No 277
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.58 E-value=0.0012 Score=63.33 Aligned_cols=38 Identities=32% Similarity=0.545 Sum_probs=33.7
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
.+.++|+||||+|.+|+.+|..+.+.|.+++++|+...
T Consensus 4 ~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~ 41 (557)
T PRK07843 4 TVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH 41 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 34579999999999999999999999999999998653
No 278
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.58 E-value=0.0047 Score=56.27 Aligned_cols=33 Identities=36% Similarity=0.597 Sum_probs=30.5
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
+|++|||+|..|+++|..|.+.+.+|+++|+..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~ 33 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD 33 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 589999999999999999999999999999854
No 279
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.57 E-value=0.00015 Score=67.02 Aligned_cols=33 Identities=42% Similarity=0.765 Sum_probs=28.2
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
.+|++|||+|.+|+++|....+.|.+..++..+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 489999999999999999999999887665543
No 280
>PRK07045 putative monooxygenase; Reviewed
Probab=97.54 E-value=0.00024 Score=65.05 Aligned_cols=37 Identities=30% Similarity=0.427 Sum_probs=33.1
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS 138 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~ 138 (312)
..+|++|||+|++|+.+|..|.+.|.+++++|+....
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4679999999999999999999999999999986643
No 281
>PRK06185 hypothetical protein; Provisional
Probab=97.53 E-value=0.00017 Score=66.46 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=33.1
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
...++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3457899999999999999999999999999999764
No 282
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.53 E-value=0.0027 Score=61.34 Aligned_cols=36 Identities=47% Similarity=0.665 Sum_probs=32.8
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..++|+||||+|.+|+.+|..+.+.+.+++++|+..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~ 45 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDP 45 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 458899999999999999999999999999999864
No 283
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.52 E-value=0.00044 Score=63.41 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=30.4
Q ss_pred cccEEEEecCcchHHHHHHHHHC---CCcEEEEecc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAH---GRKVIVLDYV 135 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~---~~~~~~ve~~ 135 (312)
.+|++|||+|++|+.+|..|.+. |.+++++|+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 57999999999999999999887 9999999984
No 284
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.52 E-value=0.0062 Score=56.20 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=30.7
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
+|++|||+|..|+++|..|.+.|.+++++|+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999865
No 285
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.52 E-value=0.00063 Score=65.32 Aligned_cols=37 Identities=32% Similarity=0.381 Sum_probs=33.4
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
...+|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4678999999999999999999999999999998653
No 286
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.50 E-value=0.0055 Score=58.90 Aligned_cols=35 Identities=34% Similarity=0.600 Sum_probs=32.0
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.++|+||||+|.+|+.+|..+.+.+.+++++|+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~ 39 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQD 39 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 47899999999999999999999999999999754
No 287
>KOG2820|consensus
Probab=97.50 E-value=0.0038 Score=54.60 Aligned_cols=35 Identities=31% Similarity=0.530 Sum_probs=31.3
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
...|++|||+|.-|+++|..|.+++.+++++|...
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~ 40 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP 40 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence 35699999999999999999999999999999654
No 288
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.49 E-value=0.00051 Score=63.34 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=30.8
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
.+|++|||+|++|+.+|..|.+.|.+++++|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 579999999999999999999999999999975
No 289
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.48 E-value=0.0036 Score=56.97 Aligned_cols=34 Identities=41% Similarity=0.552 Sum_probs=31.5
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.+|++|||+|..|+++|..|.+.+.+++++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 5799999999999999999999999999999764
No 290
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.47 E-value=0.0054 Score=58.43 Aligned_cols=114 Identities=24% Similarity=0.223 Sum_probs=70.9
Q ss_pred hhhhhhhHhhhccCCeEEEEEcc-CCC-------------------------------ccc-----------hHHHHHHH
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRS-VPL-------------------------------RGF-----------DQQMAKLI 56 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l-------------------------------~~~-----------~~~~~~~~ 56 (312)
..|+-+|..|.+.|.+++++|++ .+- +.| ..++.+|+
T Consensus 11 ~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~~~~~v~~Yl 90 (531)
T PF00743_consen 11 PSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFPSHSEVLEYL 90 (531)
T ss_dssp HHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSEBHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCCCHHHHHHHH
Confidence 36888889999999999999984 442 001 27888898
Q ss_pred HHHHhccce--EEEeeceeeEEEEcCC----CeeEEEE----------------eeccc--cccCC----C---------
Q psy11185 57 CEEMAEGGV--HFLHKCLPLSVTKLAD----GKLKVQY----------------KNVAE--VRQDN----T--------- 99 (312)
Q Consensus 57 ~~~l~~~gi--~~~~~~~v~~~~~~~~----~~~~v~~----------------~~~~~--~~~~~----~--------- 99 (312)
+...+.-++ .+++|++|.+++..++ +.-.|+. .+|-- +.-|. .
T Consensus 91 ~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~ 170 (531)
T PF00743_consen 91 ESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPGLEKFKGEII 170 (531)
T ss_dssp HHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CTGGGHCSEEE
T ss_pred HHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEE
Confidence 887776555 5778999999886443 2223322 22210 00010 0
Q ss_pred --------c-cccccEEEEecCcchHHHHHHHHHCCCcEEEEe
Q psy11185 100 --------H-KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133 (312)
Q Consensus 100 --------~-~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve 133 (312)
+ -....++|||+|.+|..+|..+.....++.+.-
T Consensus 171 HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~ 213 (531)
T PF00743_consen 171 HSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLST 213 (531)
T ss_dssp EGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEEC
T ss_pred ccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEE
Confidence 1 112458888888888888888876665655543
No 291
>PTZ00367 squalene epoxidase; Provisional
Probab=97.46 E-value=0.00015 Score=69.39 Aligned_cols=36 Identities=39% Similarity=0.780 Sum_probs=32.5
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..++|++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 347899999999999999999999999999999754
No 292
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.45 E-value=0.0065 Score=59.75 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=31.2
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
++|++|||+|.+|+++|..|.+.|.+|+++|+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3699999999999999999999999999999763
No 293
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.40 E-value=0.0087 Score=56.93 Aligned_cols=35 Identities=40% Similarity=0.634 Sum_probs=32.0
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..+|+||||+|..|+++|..+...|.+++++|+..
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35899999999999999999999999999999853
No 294
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.38 E-value=0.0075 Score=55.03 Aligned_cols=36 Identities=36% Similarity=0.501 Sum_probs=32.7
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
..+|++|||+|..|+++|..|.+.|.+++++|....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 367999999999999999999999999999997664
No 295
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.37 E-value=0.0055 Score=59.20 Aligned_cols=36 Identities=33% Similarity=0.602 Sum_probs=32.1
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..++|+||||+|.+|+.+|..+.+.+.+++++|+..
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~ 49 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTE 49 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 347899999999999999999999999999999754
No 296
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.37 E-value=0.0013 Score=61.53 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=36.0
Q ss_pred HhhHHHHHHHhcCCceEEeceeEEee---CC-eEEEEecCCCeEEEEcCeEEEccCCCCCC
Q psy11185 204 SVNWVTRVMLRDKKVDYLNALGKFID---QH-SVEATMKNGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 204 ~~~~~~~~~~~~~gV~~~~~~~~~~~---~~-~~~v~~~~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
.|...+...+.+.||+++.+++..+. .. ...+++.+| .++.+|.+|.|||....+
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g--~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDG--RTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTS--EEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCC--CEEEEeEEEECCCccchh
Confidence 34444566677889999988754332 22 346788888 789999999999965544
No 297
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.35 E-value=0.0012 Score=58.99 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecC
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G 112 (312)
..+.+.+.+.+++.||++++++++.+++.++ ....+...++ +++.+|.+|++.|
T Consensus 111 ~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-~~f~l~t~~g--------~~i~~d~lilAtG 164 (408)
T COG2081 111 SPIVDALLKELEALGVTIRTRSRVSSVEKDD-SGFRLDTSSG--------ETVKCDSLILATG 164 (408)
T ss_pred HHHHHHHHHHHHHcCcEEEecceEEeEEecC-ceEEEEcCCC--------CEEEccEEEEecC
Confidence 6788999999999999999999999998754 3356666655 4789999999999
No 298
>PRK07236 hypothetical protein; Provisional
Probab=97.33 E-value=0.0018 Score=59.26 Aligned_cols=34 Identities=32% Similarity=0.339 Sum_probs=31.3
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..+++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999764
No 299
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.30 E-value=0.0065 Score=57.37 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=31.5
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCC--CcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~ 136 (312)
....+|+||||+|..|+++|..|.+.+ .+++++|+..
T Consensus 42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 445799999999999999999998853 4799999863
No 300
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.29 E-value=0.0089 Score=55.21 Aligned_cols=32 Identities=34% Similarity=0.433 Sum_probs=29.7
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
|++|||+|..|+++|..+.+.+.+|+++|+..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 78999999999999999999999999999864
No 301
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.24 E-value=0.0029 Score=61.72 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=31.3
Q ss_pred ccccEEEEecCcchHHHHHHHHHC-CCcEEEEeccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVI 136 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~ 136 (312)
.++|++|||+||+|+.+|..|.+. |.++.++|+..
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 368999999999999999999994 99999999754
No 302
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.23 E-value=0.0026 Score=59.26 Aligned_cols=30 Identities=43% Similarity=0.638 Sum_probs=27.2
Q ss_pred EEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 108 VLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 108 ivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
|||+|.+|+.+|..+.+.|.+|+++|+...
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 689999999999999999999999998653
No 303
>PRK05868 hypothetical protein; Validated
Probab=97.20 E-value=0.0021 Score=58.61 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=30.3
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
|++|+|+|++|+.+|..|.+.|.+++++|+...
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 799999999999999999999999999998643
No 304
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.20 E-value=0.015 Score=55.33 Aligned_cols=36 Identities=39% Similarity=0.617 Sum_probs=32.5
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..++|++|||+|..|..+|..+...|.+++++|+..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 345899999999999999999999999999999763
No 305
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.19 E-value=0.0016 Score=59.93 Aligned_cols=56 Identities=27% Similarity=0.368 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecC
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G 112 (312)
..++.+.+.+.+++.||+++++++|.+++..+++...|.+.+. ..+.+|.||++.|
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~--------~~~~a~~vILAtG 163 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG--------GEYEADAVILATG 163 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT--------EEEEESEEEE---
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc--------ccccCCEEEEecC
Confidence 4778889999999999999999999999876555456666332 5789999999988
No 306
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.16 E-value=0.02 Score=52.60 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=40.3
Q ss_pred hhhhhhhhHhhhccCCeEEEEEccCCCccchHHH--------------HHHHHHHHhccceEEEeeceeeEEEE
Q psy11185 19 VDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQM--------------AKLICEEMAEGGVHFLHKCLPLSVTK 78 (312)
Q Consensus 19 ~~ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~--------------~~~~~~~l~~~gi~~~~~~~v~~~~~ 78 (312)
-..|+++|..|+++|.+|+|+|+..-+.+.-.++ .-...+.-...+|++++.++|+++..
T Consensus 133 GvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ev~G 206 (622)
T COG1148 133 GVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEEVSG 206 (622)
T ss_pred cHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeeeecc
Confidence 3579999999999999999999843232211111 11112233346899999999998764
No 307
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.16 E-value=0.038 Score=53.12 Aligned_cols=36 Identities=25% Similarity=0.549 Sum_probs=32.5
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
...+|++|||+|..|+++|..|.+.|.+++++|+..
T Consensus 4 ~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 4 SQETDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 346899999999999999999999999999999753
No 308
>KOG2311|consensus
Probab=97.16 E-value=0.0025 Score=58.17 Aligned_cols=139 Identities=19% Similarity=0.277 Sum_probs=71.9
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCC-----CCCcccccCCc--cc---ccccchhhHHHHHHHHHHHH
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPS-----PQGTTWGLGGT--CV---NVGCIPKKLMHQAALLGEAI 171 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~-----~~~~v~a~Gd~--~~---~~~~~~~~~~~~a~~~~~~~ 171 (312)
-.+|+||||+|.+|..+|....+.|.+.+.+..+..+ .+|.+=.+|-. +. ..+......-..+..+.+.+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L 106 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL 106 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence 3689999999999999999999999887666544321 22221111100 00 00011112223334444444
Q ss_pred HHHHHcCCccCCccccccCHHHHHHHHHHHHHHhhHHHHHHHhcCCceEEeceeEEe---eC---C--eEEEEecCCCeE
Q psy11185 172 KDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGKFI---DQ---H--SVEATMKNGEKK 243 (312)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~~~~~~~---~~---~--~~~v~~~~G~~~ 243 (312)
........+.+ ...+|...+...++...... .+.++..+.+... ++ . ...|.+.+| .
T Consensus 107 Nrs~GPAVwg~---RAQiDR~lYkk~MQkei~st----------~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dg--t 171 (679)
T KOG2311|consen 107 NRSKGPAVWGL---RAQIDRKLYKKNMQKEISST----------PNLEIREGAVADLIVEDPDDGHCVVSGVVLVDG--T 171 (679)
T ss_pred hccCCCcccCh---HHhhhHHHHHHHHHHHhccC----------CcchhhhhhhhheeeccCCCCceEEEEEEEecC--c
Confidence 44332222212 23456666666655443221 1233332221110 11 1 233567888 8
Q ss_pred EEEcCeEEEccC
Q psy11185 244 TLTAENILIATG 255 (312)
Q Consensus 244 ~i~ad~vVlAtG 255 (312)
.+.|+.||+.||
T Consensus 172 ~v~a~~VilTTG 183 (679)
T KOG2311|consen 172 VVYAESVILTTG 183 (679)
T ss_pred EeccceEEEeec
Confidence 899999999999
No 309
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.06 E-value=0.0063 Score=56.02 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=30.2
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
-+++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 378999999999999999999999999999764
No 310
>PRK06996 hypothetical protein; Provisional
Probab=97.01 E-value=0.0022 Score=59.04 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=31.3
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCC----CcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHG----RKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~----~~~~~ve~~~ 136 (312)
....+|++|||+||+|+.+|..|.+.+ .+++++|...
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 445789999999999999999998876 3699999754
No 311
>KOG1346|consensus
Probab=97.01 E-value=0.0014 Score=58.83 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=77.7
Q ss_pred hhhhhhHh----hhccCCeEEE-EEcc-CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeecccc
Q psy11185 21 SGLECAGF----LNGLGFNATV-MIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEV 94 (312)
Q Consensus 21 ig~E~A~~----l~~~g~~vtl-~~~~-~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~ 94 (312)
+|-|+|-. ....|.+|+= |+.. ..-+-+...++++-.+.+++.||.++.|..|+++..... .+.+.+.+|
T Consensus 358 lgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~-nl~lkL~dG--- 433 (659)
T KOG1346|consen 358 LGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK-NLVLKLSDG--- 433 (659)
T ss_pred hhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc-ceEEEecCC---
Confidence 45555544 4446888874 4432 222224456778888999999999999999999876433 367888887
Q ss_pred ccCCCccccccEEEEecCc-chHHHHH--HH-HHCCCcEEEEeccCCCCCCcccccCCcc
Q psy11185 95 RQDNTHKYDYDLLVLGGGS-GGLAAAK--EA-AAHGRKVIVLDYVIPSPQGTTWGLGGTC 150 (312)
Q Consensus 95 ~~~~~~~~~~d~vivg~G~-~gl~~a~--~~-~~~~~~~~~ve~~~~~~~~~v~a~Gd~~ 150 (312)
.++..|+||++.|- ....++. .| .+.......++..++ -..++|++||..
T Consensus 434 -----~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~-ar~NvwvAGdaa 487 (659)
T KOG1346|consen 434 -----SELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELK-ARENVWVAGDAA 487 (659)
T ss_pred -----CeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheee-cccceeeecchh
Confidence 67899999999994 2222221 11 122333455565443 356899999964
No 312
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=96.97 E-value=0.032 Score=51.38 Aligned_cols=36 Identities=42% Similarity=0.591 Sum_probs=31.0
Q ss_pred cccccEEEEecCcchHHHHHHHHHC-CC-cEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAH-GR-KVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~-~~-~~~~ve~~~ 136 (312)
...+|++|||+|..|+++|..|.+. +. +++++|+..
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 3468999999999999999999985 74 899999754
No 313
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.92 E-value=0.053 Score=49.92 Aligned_cols=34 Identities=35% Similarity=0.507 Sum_probs=30.9
Q ss_pred cccEEEEecCcchHHHHHHHHHCC--CcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~ 136 (312)
.+|++|||+|..|++++..|.+.+ .++.++|+..
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~ 38 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED 38 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 579999999999999999999888 7899999764
No 314
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.90 E-value=0.0011 Score=46.08 Aligned_cols=27 Identities=26% Similarity=0.355 Sum_probs=25.1
Q ss_pred eEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 285 KTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 285 ~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|++|||||++|+|.|..+...+.+|||
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtl 27 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTL 27 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEE
Confidence 689999999999999999999889886
No 315
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.90 E-value=0.0047 Score=57.11 Aligned_cols=32 Identities=25% Similarity=0.475 Sum_probs=28.5
Q ss_pred cEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI 136 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~ 136 (312)
+++|||+|++|+++|..|.+.+. +++++|+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 58999999999999999998874 899999854
No 316
>KOG2404|consensus
Probab=96.89 E-value=0.0082 Score=52.28 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=31.1
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQ 140 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~ 140 (312)
.+||||+|.+|++++..+...+..++++|+.....-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG 46 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG 46 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCC
Confidence 789999999999999999998888999998665433
No 317
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.88 E-value=0.0045 Score=51.00 Aligned_cols=85 Identities=22% Similarity=0.252 Sum_probs=60.5
Q ss_pred hhhhhhhHhhhccCCe-EEEEEcc-CCC--------------cc-----------------------------chHHHHH
Q psy11185 20 DSGLECAGFLNGLGFN-ATVMIRS-VPL--------------RG-----------------------------FDQQMAK 54 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~-vtl~~~~-~~l--------------~~-----------------------------~~~~~~~ 54 (312)
..|+-+|..|.+.|.+ ++|+|+. .+. +. .-+++.+
T Consensus 7 ~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 86 (203)
T PF13738_consen 7 PAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPSGEEVLD 86 (203)
T ss_dssp HHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEBHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCCHHHHHH
Confidence 4789999999999999 9999984 542 00 0156678
Q ss_pred HHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 55 LICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 55 ~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
|+++..++.+++++++++|++++.++++ ..|.+.++ .++.+|.||++.|.
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~--------~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDG--------RTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS---------EEEEEEEEE---S
T ss_pred HHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEec--------ceeeeeeEEEeeec
Confidence 8888888899999999999999987655 56777654 46789999999995
No 318
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.84 E-value=0.024 Score=51.46 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=36.7
Q ss_pred HhhHHHHHHHhcCCceEEece-eEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185 204 SVNWVTRVMLRDKKVDYLNAL-GKFIDQHSVEATMKNGEKKTLTAENILIATGGRP 258 (312)
Q Consensus 204 ~~~~~~~~~~~~~gV~~~~~~-~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p 258 (312)
.....+...+++.||++...+ +..++...+.+.+.++ ...+.||+||+|||+.+
T Consensus 87 sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~-~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 87 PLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDG-QSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCC-ceEEecCEEEEcCCCcc
Confidence 333445667888999997665 5455444566665433 14699999999999754
No 319
>KOG1298|consensus
Probab=96.77 E-value=0.0032 Score=56.01 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=33.2
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.+..+|++|||+|.+|.++|..|.+.|.++.++|+..
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 3457899999999999999999999999999999765
No 320
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.76 E-value=0.072 Score=50.34 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=29.6
Q ss_pred ccccEEEEecCcchHHHHHHHHHC--CCcEEEEec
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDY 134 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~ 134 (312)
..+|+||||+|.+|.++|..|.+. +.+++++|+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 357999999999999999999887 678999998
No 321
>KOG3851|consensus
Probab=96.74 E-value=0.0016 Score=56.53 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=32.5
Q ss_pred eEEeceeEEeeCCeEEEEecCCCeEEEEcCeEEEccCCCCCCCCCCCC
Q psy11185 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGA 266 (312)
Q Consensus 219 ~~~~~~~~~~~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~p~~~g~ 266 (312)
+++...+...+++.-++.+.+| ++|.||++|||+|.+-+.-.++|+
T Consensus 108 ~wi~ekv~~f~P~~N~v~t~gg--~eIsYdylviA~Giql~y~~IkGl 153 (446)
T KOG3851|consen 108 TWIKEKVKEFNPDKNTVVTRGG--EEISYDYLVIAMGIQLDYGKIKGL 153 (446)
T ss_pred HHHHHHHHhcCCCcCeEEccCC--cEEeeeeEeeeeeceeccchhcCh
Confidence 3333333445667778888899 899999999999976655555555
No 322
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.68 E-value=0.0057 Score=59.49 Aligned_cols=35 Identities=37% Similarity=0.531 Sum_probs=31.9
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
-..+++|||+|++|+.+|..|.+.|.+++++|+..
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 35799999999999999999999999999999754
No 323
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.61 E-value=0.016 Score=50.60 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=64.0
Q ss_pred hhhhhhhHhhhccCCeEEEEEccCCCc---------------------------------------------------cc
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRSVPLR---------------------------------------------------GF 48 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~---------------------------------------------------~~ 48 (312)
..|+-+|..|++.|.+|+|+|+....+ -.
T Consensus 10 ~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 89 (295)
T TIGR02032 10 PAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIETELAYVID 89 (295)
T ss_pred HHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccCCCcEEEEE
Confidence 468899999999999999999842110 01
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
-..+.+.+.+.+.+.|++++.+++++++..+++ .+.+.+.++. ..+++|.||.+.|...
T Consensus 90 r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-~~~~~~~~~~-------~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 90 RDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-RVVVIVRGGE-------GTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-EEEEEEcCcc-------EEEEeCEEEECCCcch
Confidence 235667777888889999999999999876443 3445444321 4688999999999754
No 324
>PRK06847 hypothetical protein; Provisional
Probab=96.59 E-value=0.015 Score=52.87 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG 114 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~ 114 (312)
+++.+.+.+.+++.|+++++++++++++..++ .+.+.+.++ .++.+|.||.+.|..
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~~~v~~~~g--------~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDD-GVTVTFSDG--------TTGRYDLVVGADGLY 162 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-EEEEEEcCC--------CEEEcCEEEECcCCC
Confidence 35566777777778999999999999876443 356666554 467899999999963
No 325
>KOG2853|consensus
Probab=96.35 E-value=0.068 Score=47.11 Aligned_cols=53 Identities=26% Similarity=0.494 Sum_probs=39.6
Q ss_pred ccccccEEEEecCcchHHHHHHHHHC----CCcEEEEeccC-CCCCCcccccCCcccc
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAH----GRKVIVLDYVI-PSPQGTTWGLGGTCVN 152 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~----~~~~~~ve~~~-~~~~~~v~a~Gd~~~~ 152 (312)
....+|++|||+|-+|.+.|..|.++ +.+++++|... -+...-....|+.|..
T Consensus 83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQ 140 (509)
T KOG2853|consen 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQ 140 (509)
T ss_pred cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeee
Confidence 34579999999999999999988643 56789999653 3444555677887754
No 326
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.34 E-value=0.045 Score=50.01 Aligned_cols=91 Identities=13% Similarity=0.025 Sum_probs=67.4
Q ss_pred HhhhccCCeEEEEEc--cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccc
Q psy11185 27 GFLNGLGFNATVMIR--SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDY 104 (312)
Q Consensus 27 ~~l~~~g~~vtl~~~--~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 104 (312)
..+...|+..-++.- +++-...-+.+.+-+.+.|++.|++++++++|..++...+....+.+.++ .++++
T Consensus 148 ~e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g--------~~i~~ 219 (486)
T COG2509 148 IEFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKG--------EEIEA 219 (486)
T ss_pred HHHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCC--------cEEec
Confidence 344445555555553 45556667888888899999999999999999998865444345666665 68999
Q ss_pred cEEEEecCcchHHHHHHHHHC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAH 125 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~ 125 (312)
|.||++-|++|-..-..+.++
T Consensus 220 ~~vvlA~Grsg~dw~~~l~~K 240 (486)
T COG2509 220 DYVVLAPGRSGRDWFEMLHKK 240 (486)
T ss_pred CEEEEccCcchHHHHHHHHHh
Confidence 999999999987766666544
No 327
>KOG2614|consensus
Probab=96.33 E-value=0.045 Score=49.40 Aligned_cols=32 Identities=34% Similarity=0.525 Sum_probs=29.8
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
+++|+|+|.+|+..|..+.+.|.++++.|...
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 78999999999999999999999999999843
No 328
>PRK07236 hypothetical protein; Provisional
Probab=96.14 E-value=0.017 Score=52.85 Aligned_cols=87 Identities=20% Similarity=0.296 Sum_probs=58.1
Q ss_pred hhhhhhhHhhhccCCeEEEEEcc-CCCcc------chHHHHHHHHH----------------------------------
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRS-VPLRG------FDQQMAKLICE---------------------------------- 58 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~~------~~~~~~~~~~~---------------------------------- 58 (312)
..|+.+|..|++.|.+|+|+|+. ..++. +.+...+.+.+
T Consensus 16 ~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 95 (386)
T PRK07236 16 LGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGRVVQRRPMPQT 95 (386)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCCEeeccCCCcc
Confidence 46899999999999999999984 33321 23332222221
Q ss_pred ---------HHhc--cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 59 ---------EMAE--GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 59 ---------~l~~--~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
.|.+ .++++++++++++++...+ .+.+.+.++ .++.+|+||.+-|...
T Consensus 96 ~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v~v~~~~g--------~~~~ad~vIgADG~~S 154 (386)
T PRK07236 96 QTSWNVLYRALRAAFPAERYHLGETLVGFEQDGD-RVTARFADG--------RRETADLLVGADGGRS 154 (386)
T ss_pred ccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC-eEEEEECCC--------CEEEeCEEEECCCCCc
Confidence 1111 1356888999999986543 366777665 4678999999989633
No 329
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.13 E-value=0.0074 Score=56.19 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=57.0
Q ss_pred hhhhhhHhhhccCCeEEEEEcc-CC---C----cc--chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEee
Q psy11185 21 SGLECAGFLNGLGFNATVMIRS-VP---L----RG--FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKN 90 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~~-~~---l----~~--~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~ 90 (312)
-|+.+|..|++.|+.||++++. .. | |. +++++.+...+.|+++||+|++|+++-.- ++++.
T Consensus 134 AGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~---------it~~~ 204 (457)
T COG0493 134 AGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD---------ITLEE 204 (457)
T ss_pred hHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCc---------CCHHH
Confidence 6899999999999999999983 32 1 22 57899999999999999999999877531 22211
Q ss_pred ccccccCCCccccccEEEEecCc
Q psy11185 91 VAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 91 ~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
..-++|.|++++|.
T Consensus 205 ---------L~~e~Dav~l~~G~ 218 (457)
T COG0493 205 ---------LLKEYDAVFLATGA 218 (457)
T ss_pred ---------HHHhhCEEEEeccc
Confidence 12356999999883
No 330
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=96.08 E-value=0.12 Score=44.52 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=64.5
Q ss_pred hhhhhhHhhhccCCeEEEEEcc-CCCcc--------------------------------------chHHHHHHHHHHHh
Q psy11185 21 SGLECAGFLNGLGFNATVMIRS-VPLRG--------------------------------------FDQQMAKLICEEMA 61 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~~-~~l~~--------------------------------------~~~~~~~~~~~~l~ 61 (312)
.|+-+|..|++.|.+|+|+|+. .+-.+ ...++...+.+...
T Consensus 36 AGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~~l~~~L~~~A~ 115 (257)
T PRK04176 36 SGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSVEAAAKLAAAAI 115 (257)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHHHHHHHHHHHHH
Confidence 5788899999999999999983 32100 12355566777777
Q ss_pred ccceEEEeeceeeEEEEcCCCee-EEEEeecc---ccccCCCccccccEEEEecCcchHHHH
Q psy11185 62 EGGVHFLHKCLPLSVTKLADGKL-KVQYKNVA---EVRQDNTHKYDYDLLVLGGGSGGLAAA 119 (312)
Q Consensus 62 ~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~---~~~~~~~~~~~~d~vivg~G~~gl~~a 119 (312)
+.|++++.++.+..+...+++.+ .+.+.... .+.......+.++.||.++|..+....
T Consensus 116 ~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~ 177 (257)
T PRK04176 116 DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVS 177 (257)
T ss_pred HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHH
Confidence 88999999999998875444222 33332110 000001146889999999997665443
No 331
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.00 E-value=0.01 Score=39.79 Aligned_cols=30 Identities=37% Similarity=0.452 Sum_probs=26.5
Q ss_pred EEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 108 VLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 108 ivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
|||+|++|+.+|..+.+.+.+++++|+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998653
No 332
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.99 E-value=0.31 Score=46.09 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=32.8
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..++|++|||+|..|+.+|..++..|.+++++|+.-
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D 45 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGD 45 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCc
Confidence 368999999999999999999999999999999753
No 333
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.99 E-value=0.045 Score=50.43 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=60.8
Q ss_pred hhhHhhhccCCeEEEEEccCCCcc--chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCcc
Q psy11185 24 ECAGFLNGLGFNATVMIRSVPLRG--FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHK 101 (312)
Q Consensus 24 E~A~~l~~~g~~vtl~~~~~~l~~--~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 101 (312)
++..++.++|.++++.+..++++. ...++.+.+.+.+++.|+++++++.+.+++... +.+.+.. ++ ..
T Consensus 77 d~~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~~v~~-~~--------~~ 146 (400)
T TIGR00275 77 DLIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-NGFGVET-SG--------GE 146 (400)
T ss_pred HHHHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-CeEEEEE-CC--------cE
Confidence 455778889999888765565543 468889999999999999999999999987643 3234443 22 35
Q ss_pred ccccEEEEecCc
Q psy11185 102 YDYDLLVLGGGS 113 (312)
Q Consensus 102 ~~~d~vivg~G~ 113 (312)
+.+|.||++.|.
T Consensus 147 i~ad~VIlAtG~ 158 (400)
T TIGR00275 147 YEADKVILATGG 158 (400)
T ss_pred EEcCEEEECCCC
Confidence 789999999995
No 334
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.90 E-value=0.01 Score=56.14 Aligned_cols=35 Identities=46% Similarity=0.545 Sum_probs=32.0
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
.+|+||||+|..||.+|..|++.|.+|.++|++..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~ 37 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR 37 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCC
Confidence 47999999999999999999999999999997653
No 335
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.83 E-value=0.072 Score=47.59 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
..+.+.+.+.+++.|+++++++++..++.+.++ +.+.+.+...+.. .++++|+||-+-|...
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~~~~~~~~~g~~---~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDG-VTVVVRDGEDGEE---ETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EEEEEEETCTCEE---EEEEESEEEE-SGTT-
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccccc-cccccccccCCce---eEEEEeeeecccCccc
Confidence 567788888888899999999999998876554 4555544422211 4689999999999644
No 336
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.78 E-value=0.044 Score=51.76 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=36.0
Q ss_pred hhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEeecee
Q psy11185 21 SGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLP 73 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v 73 (312)
+|+++|..|.++|++|++++++. .+....+.+.|++.||+++++..+
T Consensus 27 ~G~~~A~~L~~~G~~V~~~d~~~------~~~~~~~~~~l~~~gv~~~~~~~~ 73 (480)
T PRK01438 27 SGFAAADALLELGARVTVVDDGD------DERHRALAAILEALGATVRLGPGP 73 (480)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc------hhhhHHHHHHHHHcCCEEEECCCc
Confidence 89999999999999999999742 122234566688889999877543
No 337
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=95.77 E-value=0.2 Score=43.03 Aligned_cols=100 Identities=17% Similarity=0.106 Sum_probs=66.0
Q ss_pred hhhhhhHhhhccCCeEEEEEcc-CCC----------------------------c----------cchHHHHHHHHHHHh
Q psy11185 21 SGLECAGFLNGLGFNATVMIRS-VPL----------------------------R----------GFDQQMAKLICEEMA 61 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~~-~~l----------------------------~----------~~~~~~~~~~~~~l~ 61 (312)
.|+-+|..|++.|.+|+|+||. .+- + ....++...+.+...
T Consensus 32 AGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~el~~~L~~~a~ 111 (254)
T TIGR00292 32 SGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSAEFISTLASKAL 111 (254)
T ss_pred HHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHHHHHHHHHHHHH
Confidence 6788999999999999999984 321 0 012456667777778
Q ss_pred ccceEEEeeceeeEEEEcCCC--eeEEEEeeccccc---cCCCccccccEEEEecCcchHHHHH
Q psy11185 62 EGGVHFLHKCLPLSVTKLADG--KLKVQYKNVAEVR---QDNTHKYDYDLLVLGGGSGGLAAAK 120 (312)
Q Consensus 62 ~~gi~~~~~~~v~~~~~~~~~--~~~v~~~~~~~~~---~~~~~~~~~d~vivg~G~~gl~~a~ 120 (312)
+.|++++.++.+..+...++. ...+.+....... ......+.++.||.++|..+.....
T Consensus 112 e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~ 175 (254)
T TIGR00292 112 QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAV 175 (254)
T ss_pred HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHH
Confidence 889999999999998764442 2244442211000 0011468899999999976644443
No 338
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=95.77 E-value=0.14 Score=46.64 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=63.6
Q ss_pred hhhhhhHhhhccCCeEEEEE-c-cCCC---------------------------------------------------c-
Q psy11185 21 SGLECAGFLNGLGFNATVMI-R-SVPL---------------------------------------------------R- 46 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~-~-~~~l---------------------------------------------------~- 46 (312)
.|+|+|..++++|.+|.|+. . +.+. .
T Consensus 10 AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~skGpav~a~r 89 (392)
T PF01134_consen 10 AGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRSKGPAVHALR 89 (392)
T ss_dssp HHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTTS-GGCTEEE
T ss_pred HHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcccccCCCCccchH
Confidence 58999999999999999994 3 2332 0
Q ss_pred -cch-HHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc----------
Q psy11185 47 -GFD-QQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS---------- 113 (312)
Q Consensus 47 -~~~-~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~---------- 113 (312)
..| ..+.+++.+.+++ .+|+++ ..+|+.+....+....|.+.++ ..+.+|.||+++|+
T Consensus 90 ~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g--------~~~~a~~vVlaTGtfl~G~~~iG~ 160 (392)
T PF01134_consen 90 AQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDG--------EEIEADAVVLATGTFLNGCIHIGE 160 (392)
T ss_dssp EEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTS--------EEEEECEEEE-TTTGBTSEEEETT
T ss_pred hhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCC--------CEEecCEEEEecccccCceeeeee
Confidence 012 3444555566666 689996 6788888764443346666655 57899999999998
Q ss_pred -----------chHHHHHHHHHCCCc
Q psy11185 114 -----------GGLAAAKEAAAHGRK 128 (312)
Q Consensus 114 -----------~gl~~a~~~~~~~~~ 128 (312)
+...++..+.+.+..
T Consensus 161 ~~~~~Gr~ge~~s~~l~~~L~~~g~~ 186 (392)
T PF01134_consen 161 RCPPGGRRGELTSDGLSESLRKLGFE 186 (392)
T ss_dssp EEEECSCTTCC-BCHHHHHHHHTTGG
T ss_pred cccccCCCccccchHHHHHHHhhCCc
Confidence 344566667666654
No 339
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.76 E-value=0.0083 Score=59.94 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=28.6
Q ss_pred cEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI 136 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~ 136 (312)
+++|||+|++|+.+|..+.+. +.+++++|+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 589999999999999999887 77999999765
No 340
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=95.75 E-value=0.012 Score=56.81 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=63.8
Q ss_pred hhhhhhHhhhccCCeEEEEEc-cCCCccch--------------HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-
Q psy11185 21 SGLECAGFLNGLGFNATVMIR-SVPLRGFD--------------QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL- 84 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~-~~~l~~~~--------------~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~- 84 (312)
++.|++.+++.++.+++++.+ ..+++.++ .++.+.+.+.+++.||++++++.++++..+ ++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~ 248 (574)
T PRK12842 170 SNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGTPARELLTE-GGRVV 248 (574)
T ss_pred chHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEE
Confidence 688999999999999999887 46666544 457777888888999999999999998864 3433
Q ss_pred EEEEeeccccccCCCcccccc-EEEEecCc
Q psy11185 85 KVQYKNVAEVRQDNTHKYDYD-LLVLGGGS 113 (312)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~d-~vivg~G~ 113 (312)
.+.+.+... ...+.++ .||+++|.
T Consensus 249 GV~~~~~~~-----~~~i~a~k~VVlAtGg 273 (574)
T PRK12842 249 GARVIDAGG-----ERRITARRGVVLACGG 273 (574)
T ss_pred EEEEEcCCc-----eEEEEeCCEEEEcCCC
Confidence 455543211 0245675 78888885
No 341
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.37 E-value=0.31 Score=47.12 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=31.9
Q ss_pred HHHHHhcCCceEEece-eE-Ee-e-CCeE-EE---EecCCCeEEEEcCeEEEccCCCC
Q psy11185 209 TRVMLRDKKVDYLNAL-GK-FI-D-QHSV-EA---TMKNGEKKTLTAENILIATGGRP 258 (312)
Q Consensus 209 ~~~~~~~~gV~~~~~~-~~-~~-~-~~~~-~v---~~~~G~~~~i~ad~vVlAtG~~p 258 (312)
+...+.+.+|+++..+ .. .+ + ..++ -+ ...+|+...+.|+.||||||+..
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 4445566789987775 22 22 2 2222 22 33577777899999999999654
No 342
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.35 E-value=0.02 Score=54.27 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=31.1
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
.|+||||+|.+||.+|..|.+.|.+++++|++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4899999999999999999999999999998743
No 343
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.29 E-value=0.021 Score=54.09 Aligned_cols=34 Identities=44% Similarity=0.773 Sum_probs=31.3
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
+|+||||+|.+|+.+|..|.+.|.+++++|++..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 34 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLI 34 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 5899999999999999999999999999998653
No 344
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.21 E-value=0.14 Score=46.92 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=36.3
Q ss_pred HHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 54 KLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 54 ~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
+.+.+.+.+. +|++++++++++++.+++ .+.+.+.++ ..+.+|.||.+.|...
T Consensus 113 ~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~v~~~~g--------~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 113 LSLLEAVLDHPLVEFRTSTHVVGIEQDGD-GVTVFDQQG--------NRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHhcCCcEEEeCCEEEEEecCCC-ceEEEEcCC--------CEEecCEEEECCCcCh
Confidence 3344444444 499999999999875433 355555544 4678999999999644
No 345
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.18 E-value=0.085 Score=47.94 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=58.1
Q ss_pred hhhHhhhccCCeEEEEEc-cCCCc--cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCc
Q psy11185 24 ECAGFLNGLGFNATVMIR-SVPLR--GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTH 100 (312)
Q Consensus 24 E~A~~l~~~g~~vtl~~~-~~~l~--~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~ 100 (312)
++-.+|.++|.... .|+ .+++| .-..++.+.+.+.+++.||++++++.|+.++ .++ ..+.+..+. .
T Consensus 58 d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~-~~v~~~~~~-------~ 126 (376)
T TIGR03862 58 ALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT-LRFETPDGQ-------S 126 (376)
T ss_pred HHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc-EEEEECCCc-------e
Confidence 34577888888743 555 47775 3578999999999999999999999999983 222 445543221 3
Q ss_pred cccccEEEEecCc
Q psy11185 101 KYDYDLLVLGGGS 113 (312)
Q Consensus 101 ~~~~d~vivg~G~ 113 (312)
.+.+|.||+++|-
T Consensus 127 ~~~a~~vIlAtGG 139 (376)
T TIGR03862 127 TIEADAVVLALGG 139 (376)
T ss_pred EEecCEEEEcCCC
Confidence 5789999999993
No 346
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.12 E-value=0.024 Score=54.55 Aligned_cols=87 Identities=15% Similarity=0.035 Sum_probs=60.0
Q ss_pred hhhhhhHh-------hhccCCeEEEEEc-cCCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeecc
Q psy11185 21 SGLECAGF-------LNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVA 92 (312)
Q Consensus 21 ig~E~A~~-------l~~~g~~vtl~~~-~~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~ 92 (312)
+++|++.. +.++|.+|++++. ...+..+...+...+.+.+++.||++++++.++++..+++....+.....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g 250 (557)
T PRK07843 171 VWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESG 250 (557)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCC
Confidence 46677665 7778888888776 355566777788888899999999999999999998643322334443221
Q ss_pred ccccCCCcccccc-EEEEecC
Q psy11185 93 EVRQDNTHKYDYD-LLVLGGG 112 (312)
Q Consensus 93 ~~~~~~~~~~~~d-~vivg~G 112 (312)
. ...+.++ .||+++|
T Consensus 251 ~-----~~~i~A~~~VIlAtG 266 (557)
T PRK07843 251 E-----PQLIRARRGVILASG 266 (557)
T ss_pred c-----EEEEEeceeEEEccC
Confidence 1 1346674 5777665
No 347
>KOG0029|consensus
Probab=95.04 E-value=0.027 Score=53.14 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=32.4
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
...+|||||+|.+|+++|.+|.+.|.+|+++|...+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR 49 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR 49 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence 467999999999999999999999999999997544
No 348
>PRK06834 hypothetical protein; Provisional
Probab=95.04 E-value=0.16 Score=48.03 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=38.3
Q ss_pred HHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 53 AKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 53 ~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
.+.+.+.+++.||+++.+++++.++.++++ +.+.+.++ .++.+|.||.+.|.
T Consensus 103 e~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v~v~~~~g--------~~i~a~~vVgADG~ 154 (488)
T PRK06834 103 ERILAEWVGELGVPIYRGREVTGFAQDDTG-VDVELSDG--------RTLRAQYLVGCDGG 154 (488)
T ss_pred HHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-EEEEECCC--------CEEEeCEEEEecCC
Confidence 344556667779999999999999875443 55555443 46789999999996
No 349
>PLN02463 lycopene beta cyclase
Probab=94.94 E-value=0.17 Score=47.31 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=59.4
Q ss_pred hhhhhhHhhhccCCeEEEEEcc-CCC-cc--------------------------------------------chHHHHH
Q psy11185 21 SGLECAGFLNGLGFNATVMIRS-VPL-RG--------------------------------------------FDQQMAK 54 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~~-~~l-~~--------------------------------------------~~~~~~~ 54 (312)
.|+.+|..|++.|.+|.|+|++ ... +. ....+.+
T Consensus 39 AGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y~~V~R~~L~~ 118 (447)
T PLN02463 39 AGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPYGRVNRKKLKS 118 (447)
T ss_pred HHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcceeEEHHHHHH
Confidence 6778889999999999999983 211 10 0123345
Q ss_pred HHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 55 LICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 55 ~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
.+.+++.+.||+++ .++|++++..+ +...|.+.++ .++.+|.||.+.|...
T Consensus 119 ~Ll~~~~~~GV~~~-~~~V~~I~~~~-~~~~V~~~dG--------~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 119 KMLERCIANGVQFH-QAKVKKVVHEE-SKSLVVCDDG--------VKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHhhcCCEEE-eeEEEEEEEcC-CeEEEEECCC--------CEEEcCEEEECcCCCc
Confidence 56666677899996 57888887643 3356666554 4789999999999754
No 350
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=94.94 E-value=0.032 Score=50.76 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=29.4
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
+|++|||+|++|+.+|..+.+.|.+++++|+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~ 33 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKR 33 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 58999999999999999999888899999974
No 351
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.90 E-value=0.1 Score=48.10 Aligned_cols=68 Identities=15% Similarity=0.321 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHH
Q psy11185 50 QQMAKLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAK 120 (312)
Q Consensus 50 ~~~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~ 120 (312)
-.+.+.+.+.+.+. |++++++++|+.++...++.-.|...+..++.. ..+.++.|+||+|-..|.++.
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~---~~v~a~FVfvGAGG~aL~LLq 249 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEK---REVRAKFVFVGAGGGALPLLQ 249 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCe---EEEECCEEEECCchHhHHHHH
Confidence 45556666667666 999999999999999877755666655332222 578999999999976665543
No 352
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=94.83 E-value=0.11 Score=48.00 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHHHH
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEA 122 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~~ 122 (312)
.++...+.+.+.++|+++++|++|..+++..++...+...+++ ++++++.||.++|.....++...
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~-------~~~~ak~Vin~AGl~Ad~la~~~ 218 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGE-------ETLEAKFVINAAGLYADPLAQMA 218 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCc-------EEEEeeEEEECCchhHHHHHHHh
Confidence 4456677777778899999999999999877653344555542 12899999999998777766544
No 353
>PRK07588 hypothetical protein; Provisional
Probab=94.82 E-value=0.22 Score=45.65 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=32.7
Q ss_pred cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 63 GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 63 ~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
.++++++++++++++...+ .+.+.+.++ +.+++|+||.+-|.
T Consensus 115 ~~v~i~~~~~v~~i~~~~~-~v~v~~~~g--------~~~~~d~vIgADG~ 156 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRD-GVRVTFERG--------TPRDFDLVIGADGL 156 (391)
T ss_pred cCeEEEeCCEEeEEEECCC-eEEEEECCC--------CEEEeCEEEECCCC
Confidence 4799999999999986543 366777665 45689999999996
No 354
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.82 E-value=0.14 Score=46.00 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=32.2
Q ss_pred cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 63 GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 63 ~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
..++++.++.|++++..+++.+.+.+.+..++.. ..+++|.||.++|.
T Consensus 292 ~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~---~~~~~D~VilATGy 339 (341)
T PF13434_consen 292 GRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEE---ETLEVDAVILATGY 339 (341)
T ss_dssp --SEEETTEEEEEEEEES-SSEEEEEEETTT--E---EEEEESEEEE---E
T ss_pred CCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCe---EEEecCEEEEcCCc
Confidence 3468999999999998775568888877443322 57899999999994
No 355
>KOG2415|consensus
Probab=94.80 E-value=0.033 Score=50.28 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=30.4
Q ss_pred ccccccEEEEecCcchHHHHHHHHHC------CCcEEEEeccCC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAH------GRKVIVLDYVIP 137 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~------~~~~~~ve~~~~ 137 (312)
+..++|++|||+||+|+++|..+.+. +.++.++|+..+
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~ 116 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE 116 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc
Confidence 45689999999999999999988543 346889997544
No 356
>PLN02576 protoporphyrinogen oxidase
Probab=94.74 E-value=0.044 Score=51.95 Aligned_cols=37 Identities=35% Similarity=0.414 Sum_probs=32.4
Q ss_pred cccccEEEEecCcchHHHHHHHHHC-CCcEEEEeccCC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVIP 137 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~-~~~~~~ve~~~~ 137 (312)
...+|++|||+|.+||++|..|.+. |.+++++|....
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r 47 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR 47 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 4467999999999999999999988 889999998643
No 357
>KOG2852|consensus
Probab=94.72 E-value=0.67 Score=40.16 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=27.3
Q ss_pred ccEEEEecCcchHHHHHHHHHCC------CcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHG------RKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~------~~~~~ve~~~ 136 (312)
..++|+|+|..|.+.|..|.+.. ..+.++|...
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 57899999999999999998765 4578888654
No 358
>PRK08244 hypothetical protein; Provisional
Probab=94.69 E-value=0.24 Score=46.93 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=39.7
Q ss_pred HHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 52 MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 52 ~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
+.+.+.+.+++.|+++++++++++++.+++ .+.+.+.+.++ ..++.+|.||.+.|.
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~v~~~~~~g-----~~~i~a~~vVgADG~ 157 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGD-GVEVVVRGPDG-----LRTLTSSYVVGADGA 157 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCC-eEEEEEEeCCc-----cEEEEeCEEEECCCC
Confidence 445555666778999999999999876544 35566653211 136789999999996
No 359
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=94.56 E-value=0.036 Score=52.67 Aligned_cols=32 Identities=41% Similarity=0.478 Sum_probs=29.4
Q ss_pred EEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 106 LLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 106 ~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
+||||+|.+||.+|..|.+.|.+|+++|++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~ 32 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDK 32 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 58999999999999999999999999998654
No 360
>PRK02106 choline dehydrogenase; Validated
Probab=94.55 E-value=0.038 Score=53.28 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=32.1
Q ss_pred cccccEEEEecCcchHHHHHHHHH-CCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~-~~~~~~~ve~~~ 136 (312)
+.++|+||||+|.+|+.+|..|.+ .+.+|+++|...
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 456899999999999999999999 788999999763
No 361
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=94.49 E-value=0.062 Score=47.26 Aligned_cols=48 Identities=38% Similarity=0.666 Sum_probs=39.6
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCC--cccccCCc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQG--TTWGLGGT 149 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~--~v~a~Gd~ 149 (312)
.++|++|||+|.+|+-+|..+++.+.+++++|...+.+.. ..|..|+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGL 53 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGL 53 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecccE
Confidence 5789999999999999999999999999999976655543 35666664
No 362
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.48 E-value=0.21 Score=45.59 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=37.0
Q ss_pred HHHHHHHHHhccc-eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 52 MAKLICEEMAEGG-VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 52 ~~~~~~~~l~~~g-i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
+.+.+.+.+++.| ++++ ++.+++++..++ .+.+.+.++ .++.+|.+|.+.|...
T Consensus 113 l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~~~v~~~~g--------~~~~a~~vI~adG~~S 167 (388)
T PRK07608 113 IERALWAALRFQPNLTWF-PARAQGLEVDPD-AATLTLADG--------QVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHhCCCcEEE-cceeEEEEecCC-eEEEEECCC--------CEEEeeEEEEeCCCCc
Confidence 3444556666676 8888 888888875433 355555544 4678999999999743
No 363
>PRK07233 hypothetical protein; Provisional
Probab=94.47 E-value=0.048 Score=50.50 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=30.0
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
+++|||+|.+||.+|..|.+.|.+++++|+...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~ 33 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQ 33 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence 479999999999999999999999999998653
No 364
>PRK07538 hypothetical protein; Provisional
Probab=94.40 E-value=0.043 Score=50.73 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=30.3
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
|++|||+|++|+.+|..|.+.|.+++++|+...
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 799999999999999999999999999998653
No 365
>PRK06184 hypothetical protein; Provisional
Probab=94.39 E-value=0.26 Score=46.82 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=38.9
Q ss_pred HHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185 54 KLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG 114 (312)
Q Consensus 54 ~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~ 114 (312)
+.+.+.+.+.|+++++++++++++.++++ +.+.+.+.+. ..++.+|.||.+.|..
T Consensus 113 ~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~-----~~~i~a~~vVgADG~~ 167 (502)
T PRK06184 113 RILRERLAELGHRVEFGCELVGFEQDADG-VTARVAGPAG-----EETVRARYLVGADGGR 167 (502)
T ss_pred HHHHHHHHHCCCEEEeCcEEEEEEEcCCc-EEEEEEeCCC-----eEEEEeCEEEECCCCc
Confidence 34556677789999999999999875444 5555532211 1468899999999963
No 366
>PRK07208 hypothetical protein; Provisional
Probab=94.31 E-value=0.059 Score=50.82 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=30.7
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..|++|||+|.+||.+|..|.+.|.+++++|+..
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4589999999999999999999999999999754
No 367
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=94.27 E-value=0.048 Score=47.82 Aligned_cols=33 Identities=36% Similarity=0.696 Sum_probs=27.4
Q ss_pred ccEEEEecCcchHHHHHHHHHCC-CcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~ 136 (312)
||+||||+|++|..+|..|.+.+ .+|+++|...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccc
Confidence 69999999999999999999876 4899999654
No 368
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=94.10 E-value=0.079 Score=46.33 Aligned_cols=33 Identities=30% Similarity=0.593 Sum_probs=29.8
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
+|.+|||+|.+|..+|..+.+.|.+|+++|+..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~ 34 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRN 34 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccc
Confidence 699999999999999998888999999999743
No 369
>PLN02268 probable polyamine oxidase
Probab=94.07 E-value=0.063 Score=49.95 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=29.7
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
+++|||+|.+||.+|..|.+.|.+++++|...+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r 34 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDR 34 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 689999999999999999998999999997543
No 370
>KOG2844|consensus
Probab=94.06 E-value=1.6 Score=42.18 Aligned_cols=46 Identities=30% Similarity=0.350 Sum_probs=33.5
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcE-EEEeccCCCCCCcccccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKV-IVLDYVIPSPQGTTWGLG 147 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~-~~ve~~~~~~~~~v~a~G 147 (312)
..+|+||||+|-.|..++..+++.+.+. .+.+....++...-..+|
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtag 84 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAG 84 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeecccccccccc
Confidence 3589999999999999999999998875 444544444444333344
No 371
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.04 E-value=0.45 Score=43.86 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=36.0
Q ss_pred HHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 55 LICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 55 ~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
.+.+.+.+ .+|++++++++++++.++++ +.+.+.+++. ..++++|+||.+-|...
T Consensus 126 ~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~-----~~~i~adlvIgADG~~S 181 (415)
T PRK07364 126 ALQEFLQSCPNITWLCPAEVVSVEYQQDA-ATVTLEIEGK-----QQTLQSKLVVAADGARS 181 (415)
T ss_pred HHHHHHhcCCCcEEEcCCeeEEEEecCCe-eEEEEccCCc-----ceEEeeeEEEEeCCCCc
Confidence 33444444 37999999999998764433 5566653211 13589999999999633
No 372
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.01 E-value=3.4 Score=38.41 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=27.6
Q ss_pred cccEEEEecCcchHHHHHHHHHCC--CcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~ 136 (312)
++|+|+||+|.++..++..|.+.. .++.++|+..
T Consensus 3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~ 38 (488)
T PF06039_consen 3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLD 38 (488)
T ss_pred ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 689999999998888888887654 4689999754
No 373
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=93.91 E-value=0.065 Score=49.96 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=28.9
Q ss_pred cEEEEecCcchHHHHHHHHHCC--CcEEEEeccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVIP 137 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~~ 137 (312)
+++|||+|.+||.+|..|.+.| .+++++|...+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~ 36 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDR 36 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC
Confidence 5899999999999999999876 78999997543
No 374
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=93.89 E-value=0.067 Score=50.16 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.8
Q ss_pred ccEEEEecCcchHHHHHHHHHC----CCcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAH----GRKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~----~~~~~~ve~~~ 136 (312)
.|++|||+|.+||.+|..|.+. +.+++++|...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~ 39 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD 39 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence 4899999999999999999988 88999999754
No 375
>PRK05868 hypothetical protein; Validated
Probab=93.88 E-value=0.39 Score=43.72 Aligned_cols=43 Identities=14% Similarity=0.293 Sum_probs=32.9
Q ss_pred ccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 62 EGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 62 ~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
..|++++++++++.++.+ ++.+.+.+.++ .++++|+||-+-|.
T Consensus 116 ~~~v~i~~~~~v~~i~~~-~~~v~v~~~dg--------~~~~adlvIgADG~ 158 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDD-GDSVRVTFERA--------AAREFDLVIGADGL 158 (372)
T ss_pred cCCcEEEeCCEEEEEEec-CCeEEEEECCC--------CeEEeCEEEECCCC
Confidence 358899999999988754 34467777766 46789999999995
No 376
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=93.81 E-value=0.067 Score=49.84 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=31.6
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
++|+||+|+|.+++.+|..|.+.|.+|+++|++.
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~ 37 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNP 37 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEEecCCC
Confidence 5899999999999999999999999999999764
No 377
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=93.70 E-value=0.5 Score=43.30 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhccc-eEEEeeceeeEEEEcCCCeeEEEEe-eccccccCCCccccccEEEEecCc
Q psy11185 50 QQMAKLICEEMAEGG-VHFLHKCLPLSVTKLADGKLKVQYK-NVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 50 ~~~~~~~~~~l~~~g-i~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
.++.+.+.+.+.+.+ |+++.++.++.++.+++. +.+++. +| +++++|++|-+=|.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~v~l~~dG--------~~~~a~llVgADG~ 160 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VTVTLSFDG--------ETLDADLLVGADGA 160 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eEEEEcCCC--------cEEecCEEEECCCC
Confidence 677788888887765 999999999999876544 567777 55 57899999999884
No 378
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=93.66 E-value=0.081 Score=46.44 Aligned_cols=35 Identities=20% Similarity=0.535 Sum_probs=31.1
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
++|++|||+|.+|+.++..+.+.|.++.+++..+.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 68999999999999999999999999888876543
No 379
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.51 E-value=0.087 Score=38.45 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=24.3
Q ss_pred CCCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 280 EKPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 280 ~~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+..+++|+|||||..|..-+..|...+.+|+|
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~v 35 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTV 35 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 34677899999999999777777776678876
No 380
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=93.47 E-value=0.099 Score=48.15 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=30.1
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.|++|||+|++|+.+|..+.+.|.++.++|...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 489999999999999999999999999999644
No 381
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.45 E-value=0.077 Score=35.49 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEcCchhhHHHHHHhhcCceeeee
Q psy11185 288 VVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 288 VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
|||+|.+|+-+|..|...+.+|+|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v 24 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTV 24 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEE
Confidence 899999999999999988888876
No 382
>PLN02697 lycopene epsilon cyclase
Probab=93.40 E-value=0.61 Score=44.56 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=57.1
Q ss_pred hhhhhhHhhhccCCeEEEEEcc-CCCcc------------------------------------------c-hHHHHHHH
Q psy11185 21 SGLECAGFLNGLGFNATVMIRS-VPLRG------------------------------------------F-DQQMAKLI 56 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~~-~~l~~------------------------------------------~-~~~~~~~~ 56 (312)
.|+.+|..|++.|.+|.|+|+. ..... . ...+.+.+
T Consensus 119 AGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~V~R~~L~~~L 198 (529)
T PLN02697 119 AGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGRVSRTLLHEEL 198 (529)
T ss_pred HHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccEEcHHHHHHHH
Confidence 6788889999999999999963 22100 0 12233555
Q ss_pred HHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 57 CEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 57 ~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
.+.+.+.|+++ ++++++.++..+++...+...++ .++.+++||.+.|...
T Consensus 199 l~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG--------~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 199 LRRCVESGVSY-LSSKVDRITEASDGLRLVACEDG--------RVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCC--------cEEECCEEEECCCcCh
Confidence 56666779998 67888888764444222333333 4689999999999744
No 383
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=93.38 E-value=0.096 Score=44.78 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=29.8
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
+++|||+|.+|+.+|..|...|..++++|+..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 58999999999999999999999999999854
No 384
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.37 E-value=0.26 Score=44.00 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeE-EEEeeccccccCCCccccccEEEEecCcchHH
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLK-VQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLA 117 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~ 117 (312)
...+.+.+.+.+++.|++++.+++|+++..+++. +. |.+.++ . +.+|.||+++|+....
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~gv~~~~g--------~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGR-VTGVRTSDG--------E-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTE-EEEEEETTE--------E-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccc-ccccccccc--------c-cccceeEeccccccee
Confidence 5778888888899999999999999999875444 43 666554 3 8999999999974433
No 385
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=93.32 E-value=0.4 Score=46.36 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=20.3
Q ss_pred hhhhhhHhhhccCCeEEEEEcc
Q psy11185 21 SGLECAGFLNGLGFNATVMIRS 42 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~~ 42 (312)
.|+|+|..++++|.+|.|+++.
T Consensus 15 AG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 15 AGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred HHHHHHHHHHHcCCcEEEEecc
Confidence 5899999999999999999984
No 386
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=93.14 E-value=1.1 Score=41.61 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=35.7
Q ss_pred HHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 55 LICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 55 ~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
.+.+..++.|++++.++++++++..+ +.+.....++ .++.+|+||.+.|...
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~~~g--------~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 113 WLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVEADG--------DVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEEcCC--------cEEECCEEEEEeCCCH
Confidence 34555666899999999999987543 3232222222 4679999999999754
No 387
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=93.10 E-value=4.8 Score=37.25 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=33.8
Q ss_pred HHHHHhcCCceEEece-eEEee---CCeEEEEecCCCeEEEEcCeEEEccCC
Q psy11185 209 TRVMLRDKKVDYLNAL-GKFID---QHSVEATMKNGEKKTLTAENILIATGG 256 (312)
Q Consensus 209 ~~~~~~~~gV~~~~~~-~~~~~---~~~~~v~~~~G~~~~i~ad~vVlAtG~ 256 (312)
+.+.+...|+++...+ +..+. .+...+.+.+| .++.+|.||+|.|.
T Consensus 179 i~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g--~~i~~~~vvlA~Gr 228 (486)
T COG2509 179 IREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKG--EEIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCC--cEEecCEEEEccCc
Confidence 5567788899986554 44433 23466777888 89999999999993
No 388
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=92.98 E-value=1.4 Score=42.55 Aligned_cols=139 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHCCCcEEEEeccCCCCCCcccccCCcccccc---------------------cchhhHHHHHHHHHHHHHHHHHcCCc
Q psy11185 122 AAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG---------------------CIPKKLMHQAALLGEAIKDAVAYGWE 180 (312)
Q Consensus 122 ~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~~~---------------------~~~~~~~~~a~~~~~~~~~~~~~~~~ 180 (312)
|.+.|.+|+++++.........++.|+...... +.+.............+.+...+|..
T Consensus 1 ~a~~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~ 80 (565)
T TIGR01816 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQAPEAVLELEHMGMP 80 (565)
T ss_pred CCCCCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Q ss_pred cCCccccccCHHHHHHHHHH----------------HHHHhhHHHHHHHhcCCceEEece---eEEeeCCeEE----EEe
Q psy11185 181 IPNVKSVQHNWANLREAVQN----------------HVKSVNWVTRVMLRDKKVDYLNAL---GKFIDQHSVE----ATM 237 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~gV~~~~~~---~~~~~~~~~~----v~~ 237 (312)
+.......+....+...... .-..+...+...+.+.+|+++..+ ....+..++. +..
T Consensus 81 f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~ 160 (565)
T TIGR01816 81 FSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCL 160 (565)
T ss_pred cccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEc
Q ss_pred cCCCeEEEEcCeEEEccCCCCCC
Q psy11185 238 KNGEKKTLTAENILIATGGRPNY 260 (312)
Q Consensus 238 ~~G~~~~i~ad~vVlAtG~~p~~ 260 (312)
.+|+...+.|+.||||||+....
T Consensus 161 ~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 161 ETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred CCCcEEEEEeCeEEECCCCcccc
No 389
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=92.90 E-value=0.85 Score=41.62 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=56.7
Q ss_pred hhhhhhhHhhhccCCeEEEEEcc-CCCc-------------------------c-------------------c-hHHHH
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRS-VPLR-------------------------G-------------------F-DQQMA 53 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l~-------------------------~-------------------~-~~~~~ 53 (312)
..|+-+|..|++.|.+|+|+|+. .+-. . . .+.+.
T Consensus 9 ~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 88 (388)
T TIGR01790 9 PAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYGSVDSTRLH 88 (388)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCceeEEcHHHHH
Confidence 35788888888889999999963 2110 0 0 13344
Q ss_pred HHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 54 KLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 54 ~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
+.+.+.+.+.|++++ ..++..++..+++...+.+.++ ..+.++.||.+.|...
T Consensus 89 ~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g--------~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 89 EELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGG--------QRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCC--------CEEEeCEEEECCCCch
Confidence 555566667788885 5567777654333344555443 4688999999999754
No 390
>PRK06753 hypothetical protein; Provisional
Probab=92.85 E-value=0.7 Score=41.90 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=30.7
Q ss_pred ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185 64 GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG 114 (312)
Q Consensus 64 gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~ 114 (312)
..++++++++++++.+ ++.+.+.+.++ ..+.+|+||-+-|..
T Consensus 110 ~~~i~~~~~v~~i~~~-~~~v~v~~~~g--------~~~~~~~vigadG~~ 151 (373)
T PRK06753 110 EDAIFTGKEVTKIENE-TDKVTIHFADG--------ESEAFDLCIGADGIH 151 (373)
T ss_pred CceEEECCEEEEEEec-CCcEEEEECCC--------CEEecCEEEECCCcc
Confidence 3568889999998764 34366666555 467899999999953
No 391
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=92.77 E-value=0.15 Score=49.35 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=58.3
Q ss_pred hhhhhHhhhccCCeEEEEEc-cCCCccch--------------HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEE
Q psy11185 22 GLECAGFLNGLGFNATVMIR-SVPLRGFD--------------QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKV 86 (312)
Q Consensus 22 g~E~A~~l~~~g~~vtl~~~-~~~l~~~~--------------~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v 86 (312)
+.+++.++...+.++.+..+ +++|+.++ ..+.+.+.+.+++.|+++++++.++++..+++....|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV 253 (581)
T PRK06134 174 GADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGA 253 (581)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEE
Confidence 36788888888877776665 34444433 3456777888888999999999999987643222234
Q ss_pred EEeeccccccCCCccccc-cEEEEecCc
Q psy11185 87 QYKNVAEVRQDNTHKYDY-DLLVLGGGS 113 (312)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-d~vivg~G~ 113 (312)
....... ...+.+ +.||+++|.
T Consensus 254 ~~~~~~~-----~~~i~a~k~VVlAtGg 276 (581)
T PRK06134 254 VVETPGG-----LQEIRARKGVVLAAGG 276 (581)
T ss_pred EEEECCc-----EEEEEeCCEEEEcCCC
Confidence 4443211 024677 889999985
No 392
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=92.74 E-value=0.15 Score=48.64 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=32.4
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSP 139 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~ 139 (312)
+|++|||+|++|+.+|..+.+.+.+++++|......
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 599999999999999999999999999999876544
No 393
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=92.71 E-value=0.14 Score=47.47 Aligned_cols=33 Identities=42% Similarity=0.716 Sum_probs=30.4
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
++|++|||+|.+|+.+|..+.+.+.+++++++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 589999999999999999999999999999865
No 394
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=92.69 E-value=0.69 Score=42.87 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=21.1
Q ss_pred hhhhhhhHhhhccCCeEEEEEcc
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRS 42 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~ 42 (312)
-.|+|+|..|++.|.+|+|+|++
T Consensus 10 lAGleaA~~LAr~G~~V~LiE~r 32 (433)
T TIGR00137 10 LAGSEAAWQLAQAGVPVILYEMR 32 (433)
T ss_pred HHHHHHHHHHHhCCCcEEEEecc
Confidence 47999999999999999999973
No 395
>PTZ00188 adrenodoxin reductase; Provisional
Probab=92.68 E-value=0.17 Score=47.55 Aligned_cols=31 Identities=23% Similarity=0.102 Sum_probs=24.3
Q ss_pred CCCCeEEEEcCchhhHHHHHHh-hcCceeeee
Q psy11185 281 KPPGKTLVVGAGYIGKLETWDS-NSGCGNVTI 311 (312)
Q Consensus 281 ~~~~~v~VvG~G~sa~~~a~~l-~~~~~~V~~ 311 (312)
..+++|+|||+|++|+.+|..| ...+.+|+|
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~Vtl 68 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDI 68 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEE
Confidence 3577899999999999888864 455667775
No 396
>PLN02568 polyamine oxidase
Probab=92.64 E-value=0.16 Score=48.58 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=30.1
Q ss_pred cccEEEEecCcchHHHHHHHHHCC-----CcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHG-----RKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~-----~~~~~ve~~~~ 137 (312)
..|++|||+|.+|+.+|..|.+.+ .+++++|....
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~ 44 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR 44 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence 468999999999999999999776 67999997543
No 397
>PRK07045 putative monooxygenase; Reviewed
Probab=92.58 E-value=1.2 Score=40.75 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=38.6
Q ss_pred HHHHHHHHHhc-cceEEEeeceeeEEEEcCCCe-eEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 52 MAKLICEEMAE-GGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 52 ~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
+.+.+.+.+.+ .|++++++++++.++...++. +.+.+.++ +++.+|+||.+-|...
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--------~~~~~~~vIgADG~~S 165 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDG--------ERVAPTVLVGADGARS 165 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCC--------CEEECCEEEECCCCCh
Confidence 44444555543 579999999999998765552 34666544 4678999999999643
No 398
>PRK06475 salicylate hydroxylase; Provisional
Probab=92.54 E-value=1.1 Score=41.11 Aligned_cols=54 Identities=7% Similarity=0.063 Sum_probs=35.6
Q ss_pred HHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 54 KLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 54 ~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
+.+.+.+.+ .+|++++++++++++... +.+.+++.++.. .+.+++|+||-+-|.
T Consensus 111 ~~L~~~~~~~~~i~v~~~~~v~~~~~~~-~~v~v~~~~~~~-----~~~~~adlvIgADG~ 165 (400)
T PRK06475 111 SALLDACRNNPGIEIKLGAEMTSQRQTG-NSITATIIRTNS-----VETVSAAYLIACDGV 165 (400)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEecCC-CceEEEEEeCCC-----CcEEecCEEEECCCc
Confidence 334444444 479999999999987643 335666643321 145789999998885
No 399
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=92.36 E-value=0.15 Score=51.65 Aligned_cols=31 Identities=26% Similarity=0.132 Sum_probs=27.9
Q ss_pred CCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 281 KPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 281 ~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
..+++|+|||+|+.|+.+|..|...+.+|++
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv 411 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTA 411 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence 3577899999999999999999988888886
No 400
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=92.35 E-value=2.7 Score=39.34 Aligned_cols=114 Identities=18% Similarity=0.129 Sum_probs=70.5
Q ss_pred hhhhhhHhhhccCCe-EEEEEcc-CCC----------------------cc--c--------hHHHHHHHHHHHhccceE
Q psy11185 21 SGLECAGFLNGLGFN-ATVMIRS-VPL----------------------RG--F--------DQQMAKLICEEMAEGGVH 66 (312)
Q Consensus 21 ig~E~A~~l~~~g~~-vtl~~~~-~~l----------------------~~--~--------~~~~~~~~~~~l~~~gi~ 66 (312)
.||-+|..|.+.|.. +.|+|+. ++- +. + -.++.+++...+++.++.
T Consensus 19 sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~ 98 (443)
T COG2072 19 SGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLR 98 (443)
T ss_pred HHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHHHHHHHHcCce
Confidence 688999999999999 9999984 332 10 1 022677777777765543
Q ss_pred --EEeeceeeEEEEcCCC-eeEEEEeeccccc-----------------cCC--------------------CccccccE
Q psy11185 67 --FLHKCLPLSVTKLADG-KLKVQYKNVAEVR-----------------QDN--------------------THKYDYDL 106 (312)
Q Consensus 67 --~~~~~~v~~~~~~~~~-~~~v~~~~~~~~~-----------------~~~--------------------~~~~~~d~ 106 (312)
+..++.+..+.-+.++ .-.|+..++...+ .|. ......++
T Consensus 99 ~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV 178 (443)
T COG2072 99 FQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRV 178 (443)
T ss_pred eEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeE
Confidence 3334555554433332 2345554443221 000 01112468
Q ss_pred EEEecCcchHHHHHHHHHCCCcEEEEec
Q psy11185 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDY 134 (312)
Q Consensus 107 vivg~G~~gl~~a~~~~~~~~~~~~ve~ 134 (312)
+|||+|.++..++..+.+.+.++.+.-.
T Consensus 179 ~VIG~GaSA~di~~~l~~~ga~vt~~qR 206 (443)
T COG2072 179 LVIGAGASAVDIAPELAEVGASVTLSQR 206 (443)
T ss_pred EEECCCccHHHHHHHHHhcCCeeEEEec
Confidence 9999999999999999988877766654
No 401
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=92.31 E-value=0.64 Score=44.00 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHHH
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKE 121 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~ 121 (312)
..+...+.+.+++.|++++++++|++++...++.+.+.+.+...+. ...+.+|.||+++|.....++..
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~---~~~i~A~~VV~AAG~~s~~La~~ 246 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGG---KRTLNTRFVFVGAGGGALPLLQK 246 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCc---eEEEECCEEEECCCcchHHHHHH
Confidence 6677777788888999999999999998654443445443211110 02578999999999755555443
No 402
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.20 E-value=0.53 Score=44.46 Aligned_cols=30 Identities=37% Similarity=0.493 Sum_probs=27.0
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEec
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDY 134 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~ 134 (312)
.++|+|+|.+|+++|..+.+.|..+.++|.
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~ 47 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDD 47 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 689999999999999999999988888774
No 403
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=92.20 E-value=0.17 Score=46.83 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=29.8
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.+++|||+|.+|+.+|..+.+.|.++.++|...
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 378999999999999999999999999999644
No 404
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=92.18 E-value=0.19 Score=46.08 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=32.3
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccCC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~ 137 (312)
..+|+||+|+|.+||.+|..+.+.|.+++++|...+
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r 41 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDR 41 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCC
Confidence 468999999999999999999999999999997554
No 405
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=92.13 E-value=0.16 Score=49.69 Aligned_cols=33 Identities=36% Similarity=0.590 Sum_probs=31.2
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
++|+||||+|..|.++|..+...|.+++++|+.
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 589999999999999999999999999999975
No 406
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.10 E-value=0.91 Score=41.22 Aligned_cols=109 Identities=15% Similarity=0.105 Sum_probs=63.9
Q ss_pred ccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc--c---hH-HHHHHHHHCCCcEEEEecc
Q psy11185 62 EGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS--G---GL-AAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 62 ~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~--~---gl-~~a~~~~~~~~~~~~ve~~ 135 (312)
+..|.++.++.+++++..+++.+.+.+....+++. +++++|+||.++|. . -+ .++..+.-.+..-..|+..
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~---~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~d 366 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGEL---ETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRD 366 (436)
T ss_pred CCCeeeccccceeeeecCCCceEEEEEeeccCCCc---eEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCc
Confidence 35789999999999998877767777765433322 67899999999994 1 11 1122232223333555543
Q ss_pred CC-----CCCCcccccCCcccccccchhhHHHHHHHHHHHHHH
Q psy11185 136 IP-----SPQGTTWGLGGTCVNVGCIPKKLMHQAALLGEAIKD 173 (312)
Q Consensus 136 ~~-----~~~~~v~a~Gd~~~~~~~~~~~~~~~a~~~~~~~~~ 173 (312)
.. .....||+.|......|...+.+...+.+.+..+..
T Consensus 367 Y~v~~~~~~~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~~~ 409 (436)
T COG3486 367 YRVLWDGPGKGRIFVQNAELHTHGIGAPDLSLGAWRAAVILNS 409 (436)
T ss_pred eeeecCCCCcceEEEecccccccccCCccchHHHHHHHHHHHH
Confidence 22 222467887765444443333444455555555544
No 407
>PLN02676 polyamine oxidase
Probab=92.05 E-value=0.21 Score=47.32 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=31.2
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~ 136 (312)
...+|++|||+|.+|+.+|..+.+.+. +++++|...
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~ 60 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATD 60 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 346799999999999999999999887 599999754
No 408
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=92.01 E-value=0.16 Score=48.08 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=29.6
Q ss_pred ccEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~ 136 (312)
+|++|||+|..|+++|..|.+. +.+++++|+..
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 5999999999999999999886 78899999853
No 409
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=92.00 E-value=0.17 Score=48.02 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=30.4
Q ss_pred ccccEEEEecCcchHHHHHHHHHC--CCcEEEEeccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVI 136 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~--~~~~~~ve~~~ 136 (312)
..+|++|||+|..|+++|..|.+. +.+++++|+..
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 468999999999999999999874 66899999754
No 410
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=91.83 E-value=0.9 Score=41.65 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=36.4
Q ss_pred HHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe-eccccccCCCccccccEEEEecCcc
Q psy11185 54 KLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK-NVAEVRQDNTHKYDYDLLVLGGGSG 114 (312)
Q Consensus 54 ~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~d~vivg~G~~ 114 (312)
+.+.+...+.|+++++++++++++...++...|.+. +++. .++.+|+||-+-|..
T Consensus 107 ~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~------~~i~ad~vVgADG~~ 162 (392)
T PRK08243 107 RDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEE------HRLDCDFIAGCDGFH 162 (392)
T ss_pred HHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeE------EEEEeCEEEECCCCC
Confidence 344444566799999999999887522333556663 3321 367899998888863
No 411
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=91.82 E-value=1.1 Score=42.92 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=36.8
Q ss_pred HHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 55 LICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 55 ~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
.+.+.+.+ .|+++++++++++++.++++ +.+.+.+.++ + ..++.+|.||-+-|.
T Consensus 118 ~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v~v~~~~~~G-~---~~~i~ad~vVgADG~ 172 (538)
T PRK06183 118 VLRAGLARFPHVRVRFGHEVTALTQDDDG-VTVTLTDADG-Q---RETVRARYVVGCDGA 172 (538)
T ss_pred HHHHHHHhCCCcEEEcCCEEEEEEEcCCe-EEEEEEcCCC-C---EEEEEEEEEEecCCC
Confidence 34444444 48999999999999876544 6666653211 0 146789999999995
No 412
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=91.81 E-value=2.2 Score=41.32 Aligned_cols=85 Identities=12% Similarity=0.149 Sum_probs=53.7
Q ss_pred hhhhhhhHhhhccCCeEEEEEcc-CCC------------------ccc--------------------------------
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRS-VPL------------------RGF-------------------------------- 48 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l------------------~~~-------------------------------- 48 (312)
..|+++|..+++.|.+|.|+++. ..+ +.+
T Consensus 10 ~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~skgpAV~~~ 89 (617)
T TIGR00136 10 HAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSSKGPAVRAT 89 (617)
T ss_pred HHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccCCCCccccc
Confidence 36899999999999999999973 211 011
Q ss_pred ----hH-HHHHHHHHHHhcc-ceEEEeeceeeEEEEc-CCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 49 ----DQ-QMAKLICEEMAEG-GVHFLHKCLPLSVTKL-ADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 49 ----~~-~~~~~~~~~l~~~-gi~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
|+ .+...+.+.+++. ++.++.+ .+..+... ++....|.+.++ ..+.++.||+++|.
T Consensus 90 RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G--------~~I~Ad~VILATGt 152 (617)
T TIGR00136 90 RAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDG--------LKFRAKAVIITTGT 152 (617)
T ss_pred HHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCC--------CEEECCEEEEccCc
Confidence 10 1123444556665 7888755 45555433 233345665554 46889999999995
No 413
>KOG0685|consensus
Probab=91.79 E-value=0.23 Score=45.74 Aligned_cols=34 Identities=29% Similarity=0.524 Sum_probs=28.6
Q ss_pred cccEEEEecCcchHHHHHHHHHCCC-cEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGR-KVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~-~~~~ve~~~ 136 (312)
.+.+||||+|.+|+++|..|.+.+. ++.++|...
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d 55 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASD 55 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEecc
Confidence 4579999999999999999997666 578888654
No 414
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=91.65 E-value=0.13 Score=47.83 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=19.8
Q ss_pred hhhhhhhHhhhccCCeEEEEEccCCCcc--------------------------------------------------ch
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRSVPLRG--------------------------------------------------FD 49 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~~~l~~--------------------------------------------------~~ 49 (312)
..|+-+|..+++.|.+|.|+|+...|.+ ++
T Consensus 9 ~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (428)
T PF12831_consen 9 PAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGWVSNVPFD 88 (428)
T ss_dssp HHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST---------------------
T ss_pred HHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccccccccccc
Confidence 4688999999999999999998533300 11
Q ss_pred HHHH-HHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchH
Q psy11185 50 QQMA-KLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGL 116 (312)
Q Consensus 50 ~~~~-~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl 116 (312)
++.. ..+.+.+++.||++++++.+..+..+++....|.+.+... ..++.++++|=++|-+-+
T Consensus 89 ~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-----~~~i~A~~~IDaTG~g~l 151 (428)
T PF12831_consen 89 PEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-----RKEIRAKVFIDATGDGDL 151 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccc
Confidence 1211 2244556678999999999999887543333555544221 167899999999996433
No 415
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=91.65 E-value=0.69 Score=44.30 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=60.0
Q ss_pred hhhhhhhhhHhhhccCCeEEEEEc-cCCC---ccchHHHHHHHHHHHhccceEEEeeceeeEEEEc-CC--Cee-EEEEe
Q psy11185 18 KVDSGLECAGFLNGLGFNATVMIR-SVPL---RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL-AD--GKL-KVQYK 89 (312)
Q Consensus 18 ~~~ig~E~A~~l~~~g~~vtl~~~-~~~l---~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~-~~--~~~-~v~~~ 89 (312)
..-+++|+..+|.++=+++.=+.. +.+. ...-..+..-+.+.|+++||+|+++++|+.+..+ .+ +.+ .+.+.
T Consensus 190 ~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~ 269 (576)
T PRK13977 190 KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLT 269 (576)
T ss_pred hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEE
Confidence 456899999999887554332322 1111 1123677788889999999999999999998864 22 222 44444
Q ss_pred e-ccccccCCCccccccEEEEecCc
Q psy11185 90 N-VAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 90 ~-~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
. +... .....+.|.||++.|-
T Consensus 270 ~~~~~~---~I~l~~~DlVivTnGs 291 (576)
T PRK13977 270 RNGKEE---TIDLTEDDLVFVTNGS 291 (576)
T ss_pred eCCcee---EEEecCCCEEEEeCCc
Confidence 2 2211 1134578999999994
No 416
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=91.59 E-value=0.66 Score=46.44 Aligned_cols=35 Identities=34% Similarity=0.488 Sum_probs=31.6
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
...+++|||+|++|+.+|..|.+.|.+++++|...
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 45789999999999999999999999999999754
No 417
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=91.48 E-value=0.55 Score=44.56 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
...+.+.+.+.+++.|++|++++.|+++...++....|.+.++ +++++|.||+++|+
T Consensus 228 ~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g--------~~~~ad~vV~a~~~ 284 (493)
T TIGR02730 228 VGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADG--------EKIYAKRIVSNATR 284 (493)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCC--------CEEEcCEEEECCCh
Confidence 3677888889999999999999999998765443345666554 46789999999996
No 418
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=91.26 E-value=0.26 Score=46.17 Aligned_cols=32 Identities=34% Similarity=0.429 Sum_probs=29.0
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
+++|||+|++|+.+|..|.+.|.+++++|...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~ 32 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARD 32 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 47999999999999999999999999999754
No 419
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=91.22 E-value=0.54 Score=41.82 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
...+...+.+.+.+.|++++.++.|+.++..++....|...+ ..+.+|.||+++|+..
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~---------g~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPS---------GDVQADQVVLAAGAWA 193 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCC---------CEEECCEEEEcCChhh
Confidence 467778888888999999999999999986433212233222 3678999999999643
No 420
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=90.93 E-value=0.68 Score=42.37 Aligned_cols=57 Identities=11% Similarity=0.256 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
..+.+.+.+.+++.|++++.++++++++.++++ +.+.+.++ .++.+|.||.+.|...
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~g--------~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR-VRLRLDDG--------RRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-EEEEECCC--------CEEEeCEEEEecCCCc
Confidence 345566677788889999999999999865443 55665544 4678999999999754
No 421
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=90.88 E-value=1.1 Score=42.58 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhc----cc--eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHH
Q psy11185 50 QQMAKLICEEMAE----GG--VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAK 120 (312)
Q Consensus 50 ~~~~~~~~~~l~~----~g--i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~ 120 (312)
..+.+.+.+.+++ .| ++++++++|+.++..+++...|...+ .++.+|.||+++|.-...++.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~---------G~i~A~~VVvaAG~~S~~La~ 278 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNR---------GEIRARFVVVSACGYSLLFAQ 278 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECC---------CEEEeCEEEECcChhHHHHHH
Confidence 3566777778887 77 89999999999987544434454432 358999999999975555443
No 422
>PLN02529 lysine-specific histone demethylase 1
Probab=90.68 E-value=0.32 Score=48.23 Aligned_cols=35 Identities=34% Similarity=0.516 Sum_probs=31.6
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
...+++|||+|++|+.+|..+.+.|.+++++|...
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~ 193 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN 193 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence 45689999999999999999999999999999754
No 423
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=90.63 E-value=0.28 Score=46.05 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=27.8
Q ss_pred cEEEEecCcchHHHHHHHHHC------CCcEEEEeccCC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAH------GRKVIVLDYVIP 137 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~------~~~~~~ve~~~~ 137 (312)
+++|||+|.+||.+|..|.+. +.+++++|...+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r 41 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY 41 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence 589999999999999999875 357999997643
No 424
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=90.62 E-value=2 Score=41.31 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=35.9
Q ss_pred HHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185 55 LICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG 114 (312)
Q Consensus 55 ~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~ 114 (312)
.+.+.+.+. ++++++++++++++.+.++ +.+.+.+.+. ..++.+|.||.+-|..
T Consensus 130 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-v~v~~~~~~g-----~~~i~ad~vVgADG~~ 184 (547)
T PRK08132 130 YLVERAQALPNIDLRWKNKVTGLEQHDDG-VTLTVETPDG-----PYTLEADWVIACDGAR 184 (547)
T ss_pred HHHHHHHhCCCcEEEeCCEEEEEEEcCCE-EEEEEECCCC-----cEEEEeCEEEECCCCC
Confidence 344445543 7999999999999865443 4555543211 1357899999999953
No 425
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=90.58 E-value=2.4 Score=38.98 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=61.1
Q ss_pred hhhhhhhHhhhccCCeEEEEEc-cCCC------------------ccc--------------------------------
Q psy11185 20 DSGLECAGFLNGLGFNATVMIR-SVPL------------------RGF-------------------------------- 48 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~-~~~l------------------~~~-------------------------------- 48 (312)
+.|.-+|..|++.|.+|.|+|+ +..- +.+
T Consensus 13 PAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~y~v 92 (396)
T COG0644 13 PAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEVPVGEGYIV 92 (396)
T ss_pred hHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEecCCCceEEE
Confidence 3678888999999999999997 3221 000
Q ss_pred -hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHH
Q psy11185 49 -DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAA 118 (312)
Q Consensus 49 -~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~ 118 (312)
-..+-+++.++-.+.|.+++.++.+..+..+.++. .+....++ .++.+++||.+.|+.+.-.
T Consensus 93 ~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~-~~~~~~~~-------~e~~a~~vI~AdG~~s~l~ 155 (396)
T COG0644 93 DRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGV-VVGVRAGD-------DEVRAKVVIDADGVNSALA 155 (396)
T ss_pred EhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcE-EEEEEcCC-------EEEEcCEEEECCCcchHHH
Confidence 02233445666677899999999999988765552 33332221 4788999999999766443
No 426
>KOG1399|consensus
Probab=90.46 E-value=1.6 Score=40.82 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=63.4
Q ss_pred hhhhhhhHhhhccCCeEEEEEcc-CCC-----c--------c-----------------------------ch-HHHHHH
Q psy11185 20 DSGLECAGFLNGLGFNATVMIRS-VPL-----R--------G-----------------------------FD-QQMAKL 55 (312)
Q Consensus 20 ~ig~E~A~~l~~~g~~vtl~~~~-~~l-----~--------~-----------------------------~~-~~~~~~ 55 (312)
.+|+-+|..|.+.|++|+++||+ ++- + . .+ .++.+|
T Consensus 16 ~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e~~~Y 95 (448)
T KOG1399|consen 16 PAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEY 95 (448)
T ss_pred hHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcccCCCHHHHHHH
Confidence 47889999999999999999994 432 1 0 11 378888
Q ss_pred HHHHHhccce--EEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 56 ICEEMAEGGV--HFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 56 ~~~~l~~~gi--~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
++...+.-++ .+.+++.+..++...++.-+|...+..+. ....-+|.|+|+.|-
T Consensus 96 L~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~----~~~~ifd~VvVctGh 151 (448)
T KOG1399|consen 96 LRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ----IEEEIFDAVVVCTGH 151 (448)
T ss_pred HHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc----eeEEEeeEEEEcccC
Confidence 8887777665 56777877877765434456777655321 135578999999994
No 427
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=90.19 E-value=0.34 Score=44.84 Aligned_cols=36 Identities=36% Similarity=0.512 Sum_probs=31.9
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.+.-+++|||+|.+|+.+|..|.+.|.+++++|++.
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKep 157 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEP 157 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 345679999999999999999999999999999764
No 428
>PLN02661 Putative thiazole synthesis
Probab=90.18 E-value=2.9 Score=37.67 Aligned_cols=96 Identities=18% Similarity=0.178 Sum_probs=56.3
Q ss_pred hhhhhhHhhhcc-CCeEEEEEccCCCcc---------------------------------------chHHHHHHHHH-H
Q psy11185 21 SGLECAGFLNGL-GFNATVMIRSVPLRG---------------------------------------FDQQMAKLICE-E 59 (312)
Q Consensus 21 ig~E~A~~l~~~-g~~vtl~~~~~~l~~---------------------------------------~~~~~~~~~~~-~ 59 (312)
.|+-+|..|++. |.+|+|+|+.....+ +..++...+.+ .
T Consensus 103 AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha~e~~stLi~ka 182 (357)
T PLN02661 103 AGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHAALFTSTIMSKL 182 (357)
T ss_pred HHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecchHHHHHHHHHHH
Confidence 578888889875 899999998421100 01122223443 4
Q ss_pred HhccceEEEeeceeeEEEEcCCCeeEEEE------eeccccccCCCccccccEEEEecCcchH
Q psy11185 60 MAEGGVHFLHKCLPLSVTKLADGKLKVQY------KNVAEVRQDNTHKYDYDLLVLGGGSGGL 116 (312)
Q Consensus 60 l~~~gi~~~~~~~v~~~~~~~~~~~~v~~------~~~~~~~~~~~~~~~~d~vivg~G~~gl 116 (312)
+++.||+++.++.+..+..+++....+.+ .++....-.....+.++.||+++|..|.
T Consensus 183 ~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 183 LARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred HhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCc
Confidence 44578999999999888764332223332 1211100000135789999999996553
No 429
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=90.14 E-value=0.34 Score=46.51 Aligned_cols=37 Identities=32% Similarity=0.499 Sum_probs=32.8
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
...++|+||||+|.+|..+|..|.+.+.+|+++|...
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 3457999999999999999999998888999999763
No 430
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=90.00 E-value=0.4 Score=45.24 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=29.1
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
+++|||+|.+|+.+|..|.+.|.+++++|+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~ 32 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRS 32 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 47999999999999999999999999999764
No 431
>PLN02785 Protein HOTHEAD
Probab=89.98 E-value=0.33 Score=47.01 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=30.7
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
...+|+||||+|.+|+.+|..|.+ +.+|+++|...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 446999999999999999999998 57899999764
No 432
>PRK07538 hypothetical protein; Provisional
Probab=89.78 E-value=2.9 Score=38.62 Aligned_cols=57 Identities=18% Similarity=0.025 Sum_probs=35.2
Q ss_pred HHHHHHHhc-cc-eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185 54 KLICEEMAE-GG-VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG 114 (312)
Q Consensus 54 ~~~~~~l~~-~g-i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~ 114 (312)
+.+.+.+.+ .| +.+++++++++++...++ +.+.+.++..+. ..++.+|+||-+-|..
T Consensus 106 ~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~~~~~~~~~g~---~~~~~adlvIgADG~~ 164 (413)
T PRK07538 106 MLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TVVFLGDRAGGD---LVSVRGDVLIGADGIH 164 (413)
T ss_pred HHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEeccCCCc---cceEEeeEEEECCCCC
Confidence 334444433 35 569999999998865554 444554432111 1468899999999963
No 433
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=89.76 E-value=0.92 Score=41.58 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
..+.+.+.+.+.+.|++++.++++++++.+++ .+.+.+.++ ..+.+|+||.+.|...
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v~v~~~~g--------~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDE-GVTVTLSDG--------SVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-EEEEEECCC--------CEEEeCEEEEcCCCCh
Confidence 45566777777888999999999999876443 355666554 4678999999999643
No 434
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=89.59 E-value=0.33 Score=46.51 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=28.9
Q ss_pred cEEEEecCcchHHHHHHHHHCC-CcEEEEeccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVI 136 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~ 136 (312)
|+||||+|.+|+.+|..|.+.+ .+|+++|...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999887 4899999764
No 435
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=89.42 E-value=1.8 Score=41.13 Aligned_cols=67 Identities=13% Similarity=0.259 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhccc-eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHH
Q psy11185 51 QMAKLICEEMAEGG-VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAK 120 (312)
Q Consensus 51 ~~~~~~~~~l~~~g-i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~ 120 (312)
.+.+.+.+.+++.| ++++++++|++++...++.+.+.+.+..++. ...+.++.||+++|.....++.
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~---~~~i~A~~VVvaAGg~s~~L~~ 251 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGE---KRTVRAKFVFIGAGGGALPLLQ 251 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCc---eEEEEcCEEEECCCcchHHHHH
Confidence 56677777788876 9999999999998755543445543311110 0257899999999975555443
No 436
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=89.25 E-value=1 Score=42.77 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
..+.+.+.+.+++.|++|++++.|.++...++....|.+.++ ..+.+|.||+++++
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g--------~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADG--------ERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCC--------CEEECCEEEECCcH
Confidence 567788888889999999999999999865433345666554 46789999998885
No 437
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=89.22 E-value=0.51 Score=44.05 Aligned_cols=32 Identities=34% Similarity=0.400 Sum_probs=29.4
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.++|+|+|.+||++|..|.+.|.++++.|...
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence 47999999999999999999999999999754
No 438
>KOG0042|consensus
Probab=89.16 E-value=0.78 Score=43.16 Aligned_cols=35 Identities=31% Similarity=0.648 Sum_probs=29.1
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCCCcEEEEec
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDY 134 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~ 134 (312)
.+.++|++|||+|..|...|.-..-+|.++..+|.
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~ 98 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEA 98 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhcccceeEEEec
Confidence 35579999999999887777777778999988885
No 439
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=88.85 E-value=3.7 Score=37.56 Aligned_cols=60 Identities=13% Similarity=0.277 Sum_probs=35.4
Q ss_pred HHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 54 KLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 54 ~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
+++.+...+.|++++.. .++++.... +.+.+.+.++.........++.+|+||.+.|...
T Consensus 96 ~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 96 SYLRERAQKAGAELIHG-LFLKLERDR-DGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred HHHHHHHHhCCCEEEee-EEEEEEEcC-CeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 34555556679999755 577776543 3355666542100000014688999999999633
No 440
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=88.78 E-value=0.5 Score=43.54 Aligned_cols=33 Identities=30% Similarity=0.624 Sum_probs=29.6
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
+|++|||+|.+|+.+|..+.+.+.++.+++...
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999998888998988754
No 441
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=88.54 E-value=1.9 Score=39.77 Aligned_cols=58 Identities=17% Similarity=0.012 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHH
Q psy11185 51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLA 117 (312)
Q Consensus 51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~ 117 (312)
.+...+.+.+++.|+++++++.|++++..++....+... + .++.+|.||+++|.....
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~--------~~~~a~~VV~a~G~~~~~ 259 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-G--------GVITADAYVVALGSYSTA 259 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-C--------cEEeCCEEEECCCcchHH
Confidence 556667777888999999999999987644331223322 2 357899999999975433
No 442
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=88.45 E-value=8.2 Score=34.36 Aligned_cols=31 Identities=32% Similarity=0.436 Sum_probs=28.2
Q ss_pred cEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
.+-|||+|.+|..+|+++.+.|..|+..|..
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMR 35 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMR 35 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEcc
Confidence 5789999999999999999999999998854
No 443
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=88.33 E-value=1.9 Score=39.48 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHH
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAA 119 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a 119 (312)
...+.+.+.+.+++.|+++++++.+.+++..+++ +.+...+ ..+.+|.||+++|.....++
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~~~---------g~i~ad~vV~A~G~~s~~l~ 208 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRTTQ---------GEYEARTLINCAGLMSDRLA 208 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEECC---------CEEEeCEEEECCCcchHHHH
Confidence 4677788888889999999999999998764332 3444332 35789999999997443333
No 444
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=88.19 E-value=1.5 Score=40.27 Aligned_cols=54 Identities=11% Similarity=0.192 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
.+.+.+.+.+++.|++++.++++.+++.++++ +.+.+.++ .++.+|.||.+.|.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~g--------~~~~a~~vVgAdG~ 166 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD-WLLTLADG--------RQLRAPLVVAADGA 166 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EEEEECCC--------CEEEeCEEEEecCC
Confidence 34455666777789999999999999875544 55666554 46899999999996
No 445
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=88.06 E-value=0.62 Score=43.32 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=28.1
Q ss_pred cEEEEecCcchHHHHHHHHHCC--CcEEEEeccC
Q psy11185 105 DLLVLGGGSGGLAAAKEAAAHG--RKVIVLDYVI 136 (312)
Q Consensus 105 d~vivg~G~~gl~~a~~~~~~~--~~~~~ve~~~ 136 (312)
.++|||+|.+||++|..|.+.+ .++.++|+..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~ 35 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 4799999999999999999888 6789999753
No 446
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=88.04 E-value=2.5 Score=40.08 Aligned_cols=69 Identities=13% Similarity=0.271 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHh-ccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHHHH
Q psy11185 50 QQMAKLICEEMA-EGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKE 121 (312)
Q Consensus 50 ~~~~~~~~~~l~-~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a~~ 121 (312)
..+.+.+.+.+. ..|+++++++.|+.++..+++...+.+.+...+. ..++.+|.||+++|.....++..
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~---~~~i~Ad~VV~AAGawS~~La~~ 253 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGE---KREQVADYVFIGAGGGAIPLLQK 253 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCc---eEEEEcCEEEECCCcchHHHHHH
Confidence 455666666665 4599999999999987653443444432211100 02578999999999766555543
No 447
>KOG3851|consensus
Probab=87.88 E-value=1.2 Score=39.29 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=67.0
Q ss_pred HhhhccCC--eEEEEEc-c--CCCccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCcc
Q psy11185 27 GFLNGLGF--NATVMIR-S--VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHK 101 (312)
Q Consensus 27 ~~l~~~g~--~vtl~~~-~--~~l~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 101 (312)
.+++++|. ++.++.. + .++. -+..++.+++..++++|++.....+.++..+. . ..++++-+. ++..++
T Consensus 210 ~y~Rk~gvRd~a~iiy~Tsl~~iFg--Vk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~-~--~AvFe~L~k--PG~t~e 282 (446)
T KOG3851|consen 210 SYFRKRGVRDNANIIYNTSLPTIFG--VKHYADALEKVIQERNITVNYKRNLIEVRTND-R--KAVFENLDK--PGVTEE 282 (446)
T ss_pred HHHHHhCccccccEEEecCccceec--HHHHHHHHHHHHHhcceEeeeccceEEEeccc-h--hhHHHhcCC--CCceeE
Confidence 56777775 5666665 3 3322 34566788888889999998888888776432 1 233333221 122367
Q ss_pred ccccEEEEecCcchHHH-HHH-HHHCCCcEEEEec--cCCCCCCcccccCCcc
Q psy11185 102 YDYDLLVLGGGSGGLAA-AKE-AAAHGRKVIVLDY--VIPSPQGTTWGLGGTC 150 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~-a~~-~~~~~~~~~~ve~--~~~~~~~~v~a~Gd~~ 150 (312)
++++++=++--.+.... +.. +++.. ..+-+|. .+....|+||++|||.
T Consensus 283 i~yslLHv~Ppms~pe~l~~s~~adkt-GfvdVD~~TlQs~kypNVFgiGDc~ 334 (446)
T KOG3851|consen 283 IEYSLLHVTPPMSTPEVLANSDLADKT-GFVDVDQSTLQSKKYPNVFGIGDCM 334 (446)
T ss_pred EeeeeeeccCCCCChhhhhcCcccCcc-cceecChhhhccccCCCceeecccc
Confidence 88888777544332221 111 22211 2344443 2456789999999954
No 448
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=87.50 E-value=1.4 Score=40.27 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG 114 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~ 114 (312)
...+...+.+.+++ |++++.++.|.+++..+ +.+.+...++ ..+.+|.||+++|..
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~~~v~t~~g--------~~~~a~~vV~a~G~~ 189 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDG-EGWQLLDANG--------EVIAASVVVLANGAQ 189 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-CeEEEEeCCC--------CEEEcCEEEEcCCcc
Confidence 35666777788888 99999999999997643 3344544433 347899999999964
No 449
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=87.34 E-value=2.1 Score=38.85 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHH
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAA 118 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~ 118 (312)
..+.+.+.+.+++.|++++.+++|++++.++ +.+.+...+ .++.+|.||+++|.....+
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~~v~~~~---------~~i~a~~vV~aaG~~~~~l 203 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTE-LLVTVKTTK---------GSYQANKLVVTAGAWTSKL 203 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeEEEEeCC---------CEEEeCEEEEecCcchHHH
Confidence 3556677777888999999999999998643 334444322 3578999999999643333
No 450
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=87.10 E-value=2.1 Score=39.55 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
-+.+.+.+.+.+++.||+|++++.++++..+++....+.+.+...++. ..+.++.||+++|-
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~---~~i~A~aVIlAtGG 201 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEF---VRIKAKAVILATGG 201 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEE---EEEEESEEEE----
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeE---EEEeeeEEEeccCc
Confidence 467888889999999999999999999987544334566653221111 46778899998884
No 451
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=87.10 E-value=1.8 Score=39.31 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 50 QQMAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 50 ~~~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
.++.+.+.+.+.+ .|+++++++++++++.++++ +.+.+.++ .++.+|.||.+.|...
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~v~~~~g--------~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VRVTLDNG--------QQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EEEEECCC--------CEEEeeEEEEecCCCh
Confidence 3455666666666 49999999999999765443 55666544 4678999999999643
No 452
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.03 E-value=2.6 Score=39.36 Aligned_cols=44 Identities=32% Similarity=0.423 Sum_probs=30.4
Q ss_pred hhhhhhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccceEEEee
Q psy11185 21 SGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHK 70 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi~~~~~ 70 (312)
+|+++|..|++.|++|+++++.. ...+ +...+.|.+.|++++.+
T Consensus 16 ~G~~~A~~l~~~G~~V~~~d~~~-----~~~~-~~~~~~l~~~~~~~~~~ 59 (450)
T PRK14106 16 SGLALAKFLKKLGAKVILTDEKE-----EDQL-KEALEELGELGIELVLG 59 (450)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc-----hHHH-HHHHHHHHhcCCEEEeC
Confidence 89999999999999999999832 1112 22234466667776544
No 453
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=86.67 E-value=5.8 Score=37.73 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=18.4
Q ss_pred hhhhhhHhhhccCCeEEEEEc
Q psy11185 21 SGLECAGFLNGLGFNATVMIR 41 (312)
Q Consensus 21 ig~E~A~~l~~~g~~vtl~~~ 41 (312)
-|+|+|.+.+++|+++.|+.-
T Consensus 15 AG~EAA~AaARmG~ktlLlT~ 35 (621)
T COG0445 15 AGVEAALAAARMGAKTLLLTL 35 (621)
T ss_pred cchHHHHhhhccCCeEEEEEc
Confidence 489999999999999887764
No 454
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=86.62 E-value=1.9 Score=39.33 Aligned_cols=23 Identities=22% Similarity=0.033 Sum_probs=19.7
Q ss_pred hhhhhhhHhhhcc--CCeEEEEEcc
Q psy11185 20 DSGLECAGFLNGL--GFNATVMIRS 42 (312)
Q Consensus 20 ~ig~E~A~~l~~~--g~~vtl~~~~ 42 (312)
..|+.+|..|++. |.+|.|+|+.
T Consensus 9 ~AGl~lA~~L~~~~~g~~V~lle~~ 33 (370)
T TIGR01789 9 LAGGLIALRLQRARPDFRIRVIEAG 33 (370)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 3588999999887 9999999984
No 455
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=86.49 E-value=0.9 Score=43.57 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=29.9
Q ss_pred cccEEEEecCcchHHHHHHHHHC----CCcEEEEeccCC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAH----GRKVIVLDYVIP 137 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~----~~~~~~ve~~~~ 137 (312)
..+++|||+|.+||++|..|.+. |.++.++|+...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~ 60 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV 60 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence 35889999999999999999885 568999998653
No 456
>PLN02612 phytoene desaturase
Probab=86.47 E-value=0.84 Score=44.15 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=30.8
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
...+++|||+|.+|+.+|..+.+.+.+++++|..
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~ 125 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEAR 125 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 3568999999999999999999999999999974
No 457
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=5.5 Score=32.96 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=54.4
Q ss_pred chhhhhhh---hhHhhhccCCeEEEEEccCCCccchHHHHHHHHHHHhccce-EEEeeceeeEEEEcCCCeeEEEEeecc
Q psy11185 17 DKVDSGLE---CAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGV-HFLHKCLPLSVTKLADGKLKVQYKNVA 92 (312)
Q Consensus 17 ~~~~ig~E---~A~~l~~~g~~vtl~~~~~~l~~~~~~~~~~~~~~l~~~gi-~~~~~~~v~~~~~~~~~~~~v~~~~~~ 92 (312)
++-+||.- .|..|+++..+|+-+|| ++++.+.+.+.|+..|+ ++ . +...||.
T Consensus 75 ~VLEIGtGsGY~aAvla~l~~~V~siEr-------~~~L~~~A~~~L~~lg~~nV------~-----------v~~gDG~ 130 (209)
T COG2518 75 RVLEIGTGSGYQAAVLARLVGRVVSIER-------IEELAEQARRNLETLGYENV------T-----------VRHGDGS 130 (209)
T ss_pred eEEEECCCchHHHHHHHHHhCeEEEEEE-------cHHHHHHHHHHHHHcCCCce------E-----------EEECCcc
Confidence 34455553 56788899889999997 56667777888888775 22 1 1222222
Q ss_pred ccccCCCccccccEEEEecCcc--hHHHHHHHHHCCCcEEEE
Q psy11185 93 EVRQDNTHKYDYDLLVLGGGSG--GLAAAKEAAAHGRKVIVL 132 (312)
Q Consensus 93 ~~~~~~~~~~~~d~vivg~G~~--gl~~a~~~~~~~~~~~~v 132 (312)
.+ ....-+||.|+|.++.. .-.+..+|..-|.-++.+
T Consensus 131 ~G---~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 131 KG---WPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred cC---CCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEE
Confidence 21 11345899999999953 345555565433323433
No 458
>PLN03000 amine oxidase
Probab=85.95 E-value=1 Score=45.36 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=30.7
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
..+++|||+|++|+.+|..+.+.+.+++++|...
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 217 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK 217 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 4789999999999999999999999999999754
No 459
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=85.09 E-value=2.8 Score=38.15 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=31.3
Q ss_pred HHHhcCCceEEece-eEEe--eCCeEEEEecCCCeEEEEcCeEEEccCCCC
Q psy11185 211 VMLRDKKVDYLNAL-GKFI--DQHSVEATMKNGEKKTLTAENILIATGGRP 258 (312)
Q Consensus 211 ~~~~~~gV~~~~~~-~~~~--~~~~~~v~~~~G~~~~i~ad~vVlAtG~~p 258 (312)
..+.. |+++...+ +..+ +...+.+++.+| ..+.+|.||+|+|.+.
T Consensus 143 ~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g--~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 143 AHAGI-RLTLHFNTEITSLERDGEGWQLLDANG--EVIAASVVVLANGAQA 190 (381)
T ss_pred hccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCC--CEEEcCEEEEcCCccc
Confidence 44556 88876654 3333 345677888888 4689999999999653
No 460
>PLN02612 phytoene desaturase
Probab=85.04 E-value=2.5 Score=40.86 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe-eEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
..+.+.+.+.|++.|.+|++++.|++|+.++++. ..+.+.+| +.+++|.||++..+
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G--------~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNG--------SVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCC--------cEEECCEEEECCCH
Confidence 4466777788888999999999999998755553 23555554 46789999998764
No 461
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=85.00 E-value=4.2 Score=37.61 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG 114 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~ 114 (312)
-..+.+.+.+.+++.|++++.+++|.++...++....+...++. ...+.+|.+|+++|.-
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~------~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHR------DIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCc------cceEECCEEEEccCCC
Confidence 45677778889999999999999999987544332223333321 0468899999999964
No 462
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=84.95 E-value=3.4 Score=39.47 Aligned_cols=67 Identities=6% Similarity=0.016 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHH
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAA 118 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~ 118 (312)
+..+...+.+...+.|++++.+++|++++..++....+.+.+..++. ...+.++.||.++|+-.-.+
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~---~~~i~a~~VVnAaG~wa~~l 193 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGE---EERIEAQVVINAAGIWAGRI 193 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCc---EEEEEcCEEEECCCcchHHH
Confidence 34555666677888999999999999998654432345554321110 13688999999999744333
No 463
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=84.68 E-value=4 Score=37.53 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHHH
Q psy11185 51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAA 119 (312)
Q Consensus 51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~a 119 (312)
.+...+.+.+++.|++++.+++|++++..+ +.+.+.+.++... ....+.+|.||+++|+....++
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~v~~~~~~~~---~~~~i~a~~vV~a~G~~s~~l~ 262 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGVVLTVQPSAEH---PSRTLEFDGVVVCAGVGSRALA 262 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEcCCCC---ccceEecCEEEECCCcChHHHH
Confidence 445666778888999999999999997643 3244443332100 0135789999999997544443
No 464
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=84.39 E-value=3 Score=37.84 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhccc-eEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcc
Q psy11185 51 QMAKLICEEMAEGG-VHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSG 114 (312)
Q Consensus 51 ~~~~~~~~~l~~~g-i~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~ 114 (312)
.+.+.+.+.+.+.| ++++.++++++++... +.+.+.+.++ ..+.+|+||.+.|..
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~~v~~~~g--------~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS-DHVELTLDDG--------QQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC-CeeEEEECCC--------CEEEeeEEEEeCCCC
Confidence 34555666677777 9999999999997644 3355666554 457899999999963
No 465
>KOG1238|consensus
Probab=84.37 E-value=1 Score=43.20 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=31.0
Q ss_pred ccccccEEEEecCcchHHHHHHHHHCC-CcEEEEeccC
Q psy11185 100 HKYDYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLDYVI 136 (312)
Q Consensus 100 ~~~~~d~vivg~G~~gl~~a~~~~~~~-~~~~~ve~~~ 136 (312)
...++|.||||+|.+|..+|..|.+.. .+|+++|...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg 91 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG 91 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCC
Confidence 345799999999999999999998764 4789999654
No 466
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=84.19 E-value=4.3 Score=39.12 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHH
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAA 118 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~ 118 (312)
..+...+.....+.|++++.+++|+.+...++....+.+.+..++. ...+.+|.||.++|+-.-.+
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~---~~~i~A~~VVnAaG~wa~~l 214 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGE---TQEIHAPVVVNAAGIWGQHI 214 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCc---EEEEECCEEEECCChhHHHH
Confidence 4455555666778899999999999997654332345554321110 13678999999999744333
No 467
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=83.69 E-value=3.6 Score=37.56 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 52 MAKLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 52 ~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
+.+.+.+.+.+. ||+++.++++++++..+++ +.+.+.++ ..+.+|+||.+.|...
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g--------~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDG-WELTLADG--------EEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-EEEEECCC--------CEEEeCEEEEeCCCCc
Confidence 344555556665 9999999999998764433 45655544 4678999999999643
No 468
>KOG4254|consensus
Probab=83.60 E-value=1.4 Score=40.67 Aligned_cols=34 Identities=44% Similarity=0.660 Sum_probs=31.5
Q ss_pred ccccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 102 ~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
-++|+|+||+|..||.++..+.+.+.++++.|..
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerr 46 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERR 46 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEe
Confidence 4799999999999999999999999999999875
No 469
>PLN02487 zeta-carotene desaturase
Probab=83.60 E-value=1.3 Score=42.81 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=30.1
Q ss_pred ccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 104 ~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
.+++|||+|++|+.+|..+.+.|.+++++|...
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~ 108 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP 108 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence 489999999999999999999999999999754
No 470
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=83.48 E-value=3.3 Score=39.21 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 46 RGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 46 ~~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
++=...+.+.+.+.+++.|.+|++++.|++|...++....+.+.++..+. ...+.+|.||.++.+
T Consensus 228 ~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~---~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 228 HGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQE---DLNVKADDVVANLPP 292 (492)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCc---eEEEECCEEEECCCH
Confidence 33456788889999999999999999999998654322244444431110 035789999988886
No 471
>PRK11445 putative oxidoreductase; Provisional
Probab=83.41 E-value=9.4 Score=34.36 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=33.1
Q ss_pred ccceEEEeeceeeEEEEcCCCeeEEEEe-eccccccCCCccccccEEEEecCcch
Q psy11185 62 EGGVHFLHKCLPLSVTKLADGKLKVQYK-NVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 62 ~~gi~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
+.||++++++.+.+++..+++ +.+.+. ++.. .++.+|.||.+.|...
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~-~~v~~~~~g~~------~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDG-YHVIFRADGWE------QHITARYLVGADGANS 157 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCE-EEEEEecCCcE------EEEEeCEEEECCCCCc
Confidence 468999999999998765443 455543 3310 2578999999999744
No 472
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=83.09 E-value=4.8 Score=31.61 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=29.7
Q ss_pred cceEEE-eeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 63 GGVHFL-HKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 63 ~gi~~~-~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
.+|++. ...+|+.+...+++ ..+.+.++ ..+.+|.||++.|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~-~~v~~~~g--------~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDG-YRVVTADG--------QSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCc-EEEEECCC--------CEEEeCEEEECCCC
Confidence 466554 34678888876555 46666665 56799999999984
No 473
>KOG2403|consensus
Probab=83.06 E-value=21 Score=34.10 Aligned_cols=50 Identities=34% Similarity=0.538 Sum_probs=43.5
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccc
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN 152 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~ 152 (312)
.+|.+++|+|-+|+..+..+.+.+..+.++.+..++....+++.|+..+.
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~ 104 (642)
T KOG2403|consen 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAA 104 (642)
T ss_pred eceeEEEeccchhhhhhhhhhhcCceEEEEeccccccccchhhhhhhhhh
Confidence 48999999999999999999999988888888888888889998886433
No 474
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=83.01 E-value=9.4 Score=34.78 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=59.6
Q ss_pred hhhhhhhHhh--hccCCeEEEEEc-cCCC-c----------------------------------------c----chHH
Q psy11185 20 DSGLECAGFL--NGLGFNATVMIR-SVPL-R----------------------------------------G----FDQQ 51 (312)
Q Consensus 20 ~ig~E~A~~l--~~~g~~vtl~~~-~~~l-~----------------------------------------~----~~~~ 51 (312)
..|+-+|..| ++.|.+|.|+|+ .... + . ....
T Consensus 9 pAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y~~i~~~~ 88 (374)
T PF05834_consen 9 PAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPYCMIDRAD 88 (374)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccceEEEEHHH
Confidence 3577778888 778888888887 3331 0 0 1256
Q ss_pred HHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchH
Q psy11185 52 MAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGL 116 (312)
Q Consensus 52 ~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl 116 (312)
+.+++.+.+.+.+ .+.++++|.+++..++ ...+.+.+| ..+.+++||-+-|+...
T Consensus 89 f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~-~~~v~~~~g--------~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 89 FYEFLLERAAAGG-VIRLNARVTSIEETGD-GVLVVLADG--------RTIRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHHHHhhhCC-eEEEccEEEEEEecCc-eEEEEECCC--------CEEEeeEEEECCCcccc
Confidence 6677777777445 4667899999887544 245666665 57899999999996544
No 475
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=82.97 E-value=3.4 Score=37.39 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchH
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGL 116 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl 116 (312)
..+...+.+.+.+.|+++++++++++++...+ .+.+...+ ..+.+|.||+++|....
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~---------g~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGD-GVTVTTAD---------GTYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC-eEEEEeCC---------CEEEeeEEEEecCcchh
Confidence 44555566677788999999999999986433 24444332 25789999999997433
No 476
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=82.93 E-value=4 Score=38.18 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCe-eEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGK-LKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
..+.+.+.+.+++.|.+|++++.|++|+..+++. ..+.+.+++..+ ..++.+|.||++..+
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~---~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQR---RFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCc---eeEEECCEEEEcCCH
Confidence 4566777888888899999999999997544442 345565442100 015789999999875
No 477
>PRK07233 hypothetical protein; Provisional
Probab=81.82 E-value=4.4 Score=37.40 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
...+.+.+.+.+++.|+++++++.|++++..++. +.+...++ ..+++|.||++..+
T Consensus 197 ~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~-~~~~~~~~--------~~~~ad~vI~a~p~ 252 (434)
T PRK07233 197 FATLIDALAEAIEARGGEIRLGTPVTSVVIDGGG-VTGVEVDG--------EEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCc-eEEEEeCC--------ceEECCEEEECCCH
Confidence 3567778888888889999999999999865443 33333333 46789999999885
No 478
>PRK09126 hypothetical protein; Provisional
Probab=81.72 E-value=3.8 Score=37.39 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=37.7
Q ss_pred HHHHHHH-hccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 54 KLICEEM-AEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 54 ~~~~~~l-~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
+.+.+.+ ++.|++++.++++++++...+ .+.+.+.++ .++.+|+||.+.|...
T Consensus 114 ~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~~~v~~~~g--------~~~~a~~vI~AdG~~S 167 (392)
T PRK09126 114 RAAYEAVSQQDGIELLTGTRVTAVRTDDD-GAQVTLANG--------RRLTARLLVAADSRFS 167 (392)
T ss_pred HHHHHHHhhCCCcEEEcCCeEEEEEEcCC-eEEEEEcCC--------CEEEeCEEEEeCCCCc
Confidence 3344444 346999999999999876433 356666554 4689999999999633
No 479
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=81.37 E-value=4.7 Score=37.49 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcC-CCee-EEEEeeccccccCCCccccccEEEEecCc
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA-DGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~-~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
...+.+.+.+.+++.|+++++++.++++..+. ++.+ .+...++. ..+.++.||+++|-
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~-------~~i~ak~VIlAtGG 181 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT-------HRITTQALVLAAGG 181 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc-------EEEEcCEEEEcCCC
Confidence 35677788888899999999999999987643 3433 23332211 35778999999994
No 480
>PRK07190 hypothetical protein; Provisional
Probab=81.34 E-value=4.4 Score=38.45 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=37.4
Q ss_pred HHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 55 LICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 55 ~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
.+.+.+++.|++++.+++++.++.++++ +.+.+.++ .++.++.||.+-|.
T Consensus 114 ~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v~v~~~~g--------~~v~a~~vVgADG~ 163 (487)
T PRK07190 114 LLDDKLKEAGAAVKRNTSVVNIELNQAG-CLTTLSNG--------ERIQSRYVIGADGS 163 (487)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCCe-eEEEECCC--------cEEEeCEEEECCCC
Confidence 4455677789999999999999875544 44555443 46789999999995
No 481
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=81.03 E-value=5.1 Score=36.71 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEe-eccccccCCCccccccEEEEecCc
Q psy11185 48 FDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYK-NVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 48 ~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
+...+.+.+.+.+++.|.+|++++.|++|+..+++ +.+.+. ++ +.+.+|.||++.-+
T Consensus 195 ~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~~~g--------~~~~~d~vi~a~p~ 252 (419)
T TIGR03467 195 LSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVLSGG--------ETLPADAVVLAVPP 252 (419)
T ss_pred HHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEecCC--------ccccCCEEEEcCCH
Confidence 33344454677787889999999999999875543 334333 33 46789999997664
No 482
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=80.97 E-value=4.4 Score=35.86 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=30.3
Q ss_pred HHHHHhcCCceEEece-eEEee--CCeE-EEEecCCCeEEEEcCeEEEccCCC
Q psy11185 209 TRVMLRDKKVDYLNAL-GKFID--QHSV-EATMKNGEKKTLTAENILIATGGR 257 (312)
Q Consensus 209 ~~~~~~~~gV~~~~~~-~~~~~--~~~~-~v~~~~G~~~~i~ad~vVlAtG~~ 257 (312)
+...+...|+++...+ +..+. ...+ .+.+++| .+.||.||+|+|.+
T Consensus 143 l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g---~~~a~~vV~a~G~~ 192 (337)
T TIGR02352 143 LEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG---DVQADQVVLAAGAW 192 (337)
T ss_pred HHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC---EEECCEEEEcCChh
Confidence 4445667788887664 33332 2333 4566666 68999999999954
No 483
>PLN02976 amine oxidase
Probab=80.77 E-value=1.8 Score=45.96 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=31.4
Q ss_pred cccccEEEEecCcchHHHHHHHHHCCCcEEEEecc
Q psy11185 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV 135 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~ 135 (312)
+...+++|||+|++|+.+|..|.+.|.+++++|..
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~ 725 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEAR 725 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeec
Confidence 45678999999999999999999999999999974
No 484
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=80.62 E-value=2.1 Score=39.85 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=24.8
Q ss_pred cccEEEEecCcchHHHHHHHHHCCCcEEEEeccC
Q psy11185 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVI 136 (312)
Q Consensus 103 ~~d~vivg~G~~gl~~a~~~~~~~~~~~~ve~~~ 136 (312)
++|+||+|+|..-.-+|..+...|.+|+.+|++.
T Consensus 4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~ 37 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRND 37 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCC
Confidence 7899999999877777778889999999999754
No 485
>PLN02529 lysine-specific histone demethylase 1
Probab=80.40 E-value=1.7 Score=43.28 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 282 PPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 282 ~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
..++|+|||+|.+|+.+|..|...+.+|+|
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v 188 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVV 188 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEE
Confidence 356799999999999999999988888876
No 486
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.24 E-value=4.2 Score=38.55 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 47 GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 47 ~~~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
+-...+.+.+.+.+++.|++|+++++|++|...++..+.+...++ ..+++|.||..+.+
T Consensus 221 GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g--------~~~~ad~vv~~~~~ 279 (487)
T COG1233 221 GGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDG--------ENIEADAVVSNADP 279 (487)
T ss_pred CCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEecccc--------ceeccceeEecCch
Confidence 345678888999999999999999999999865433233433332 36789999999887
No 487
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=80.20 E-value=1.9 Score=42.32 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=27.0
Q ss_pred CCCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 281 KPPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 281 ~~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
..+.+|+|||||..|+-+|..|...+.+|+|
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V 109 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLV 109 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 4556799999999999999999998888876
No 488
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=80.11 E-value=5.6 Score=37.00 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeeccccccCCCccccccEEEEecCc
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
...+.+.+.+.+++.||++++++.++++..+.++.+ .+.+.+... . ...+.++.||+++|.
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g-~---~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGK-G---IYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCC-e---EEEEecceEEEecCC
Confidence 356778888889999999999999999986544433 455543211 0 124678999999994
No 489
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=80.07 E-value=2.7 Score=39.43 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=24.7
Q ss_pred CCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 283 PGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 283 ~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
.-.|+|||||+.|.-+|..|+..+.+|.|
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~Vll 67 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFL 67 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 34799999999999999998888777765
No 490
>PRK06996 hypothetical protein; Provisional
Probab=80.04 E-value=4.7 Score=37.01 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 50 QQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 50 ~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
..+.+.+.+.+.+.|++++.++++++++.+.++ +.+.+.++... ..+.+|+||-+-|.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v~v~~~~~~g~-----~~i~a~lvIgADG~ 172 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-VTLALGTPQGA-----RTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-EEEEECCCCcc-----eEEeeeEEEECCCC
Confidence 567788888888899999999999998765444 56666543211 36889999988784
No 491
>PLN02487 zeta-carotene desaturase
Probab=79.34 E-value=2.1 Score=41.44 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=25.6
Q ss_pred CCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 283 PGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 283 ~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
+++|+|||+|.+|+-++..|...+.+|+|
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i 103 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDI 103 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEE
Confidence 34899999999999999999988888876
No 492
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=78.83 E-value=6.7 Score=36.06 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=38.9
Q ss_pred HHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 52 MAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 52 ~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
+.+.+.+.+.+ .+|+++.++++++++.++++ +.+.+.++ +.+.+|+||.+-|.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~~v~~~~g--------~~~~a~lvIgADG~ 166 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE-AWLTLDNG--------QALTAKLVVGADGA 166 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-EEEEECCC--------CEEEeCEEEEeCCC
Confidence 44455555555 47999999999998764443 56777655 56899999999996
No 493
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=78.76 E-value=2.1 Score=42.94 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=25.9
Q ss_pred CCCeEEEEcCchhhHHHHHHhhcCceeeee
Q psy11185 282 PPGKTLVVGAGYIGKLETWDSNSGCGNVTI 311 (312)
Q Consensus 282 ~~~~v~VvG~G~sa~~~a~~l~~~~~~V~~ 311 (312)
..++|+|||+|.+|+.+|..|...+.+|+|
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v 266 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVV 266 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence 456799999999999999999888777775
No 494
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=78.63 E-value=6.1 Score=36.03 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=34.0
Q ss_pred cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 63 GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 63 ~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
.+++++.++++++++.++++ +.+.+.++ .++.+|+||.+-|.
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~-~~v~~~~g--------~~~~~~lvIgADG~ 165 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEG-NRVTLESG--------AEIEAKWVIGADGA 165 (384)
T ss_pred CCeEEECCCceeEEEEcCCe-EEEEECCC--------CEEEeeEEEEecCC
Confidence 47999999999999875444 66777665 57899999999996
No 495
>KOG2755|consensus
Probab=78.33 E-value=0.86 Score=38.92 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=35.6
Q ss_pred cccccEEEEecCcchH---HHHHHHHHCCCcEEEEeccCCCCCCcccccCCcccc
Q psy11185 101 KYDYDLLVLGGGSGGL---AAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVN 152 (312)
Q Consensus 101 ~~~~d~vivg~G~~gl---~~a~~~~~~~~~~~~ve~~~~~~~~~v~a~Gd~~~~ 152 (312)
.+.+|.++.++|.... ..-..+.-.....+.++..++|+.|++||+||.|+.
T Consensus 268 qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 268 QLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred eeeeeEEEeccccCcCceEEecChhhhccccCeeehhhccccccceeeecceecc
Confidence 4558999999995211 111112222334688899999999999999999873
No 496
>PRK09897 hypothetical protein; Provisional
Probab=78.24 E-value=6.9 Score=37.57 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=23.8
Q ss_pred CCeEEEEecCCCeEEEEcCeEEEccCCCCCC---CCCCCC
Q psy11185 230 QHSVEATMKNGEKKTLTAENILIATGGRPNY---PDIPGA 266 (312)
Q Consensus 230 ~~~~~v~~~~G~~~~i~ad~vVlAtG~~p~~---p~~~g~ 266 (312)
...+.+...++ .+.+|.+|-|||.++.. .|||++
T Consensus 422 ~~~~~~~~~~~---~~~~~~~i~a~G~~~~~~~~~pf~~l 458 (534)
T PRK09897 422 ESRTVIKTEDN---SYSFDVFIDARGQRPLKVKDIPFPGL 458 (534)
T ss_pred CCeEEEEeCCC---ceEeCEEEECCCCCCCccccCCchHH
Confidence 44556666543 78899999999987644 456655
No 497
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.19 E-value=6.3 Score=37.53 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHhccceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcchHHH
Q psy11185 49 DQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAA 118 (312)
Q Consensus 49 ~~~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~gl~~ 118 (312)
+..+...+....++.|++++.+++|.++..++ +...+.+.++. ++ ..++.++.||.++|+..-.+
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~~~~v~~~~~~-g~---~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREG-GLWRVETRDAD-GE---TRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-CEEEEEEEeCC-CC---EEEEEecEEEECCCccHHHH
Confidence 34555556667788999999999999988653 33455555432 11 13578999999999744343
No 498
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=77.98 E-value=7.2 Score=35.54 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=38.5
Q ss_pred HHHHHHHHHhc-cceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCcch
Q psy11185 52 MAKLICEEMAE-GGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115 (312)
Q Consensus 52 ~~~~~~~~l~~-~gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~~g 115 (312)
+.+.+.+.+.+ .|++++.+++++++...+++ +.+.+.++ ..+.+|.||.+.|...
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~~v~~~~g--------~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGS-VRVTLDDG--------ETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-EEEEECCC--------CEEEeCEEEEecCCCh
Confidence 34455555555 48999999999998764433 45655544 4578999999999643
No 499
>PRK08013 oxidoreductase; Provisional
Probab=77.82 E-value=6.9 Score=35.94 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcc-ceEEEeeceeeEEEEcCCCeeEEEEeeccccccCCCccccccEEEEecCc
Q psy11185 52 MAKLICEEMAEG-GVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGS 113 (312)
Q Consensus 52 ~~~~~~~~l~~~-gi~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vivg~G~ 113 (312)
+.+.+.+.+.+. +|+++.++++++++.++++ +.+.+.++ .++.+|+||-+-|.
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~~~g--------~~i~a~lvVgADG~ 166 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENE-AFLTLKDG--------SMLTARLVVGADGA 166 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-EEEEEcCC--------CEEEeeEEEEeCCC
Confidence 344455555554 8999999999999765443 56667655 56899999999995
No 500
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=77.76 E-value=7.9 Score=36.90 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhccceEEEeeceeeEEEEcCCCee-EEEEeeccccccCCCccccccEEEEecC
Q psy11185 51 QMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKL-KVQYKNVAEVRQDNTHKYDYDLLVLGGG 112 (312)
Q Consensus 51 ~~~~~~~~~l~~~gi~~~~~~~v~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~d~vivg~G 112 (312)
.+.+.+.+.+++.||++++++.++++..+ ++.+ .+.+...+. . ...+.++.||+++|
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g-~---~~~i~a~~VVlAtG 248 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKINGK-E---TKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCC-e---EEEEecCeEEEeCC
Confidence 45667777888899999999999999754 3433 344432210 0 13578899999998
Done!