RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11185
(312 letters)
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 329 bits (846), Expect = e-110
Identities = 126/210 (60%), Positives = 159/210 (75%), Gaps = 2/210 (0%)
Query: 86 VQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWG 145
V + +D YDYDL+++GGGSGGLAAAKEAA +G+KV+VLD+V P+P GT WG
Sbjct: 15 VPRGSHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWG 74
Query: 146 LGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV 205
LGGTCVNVGCIPKKLMHQAALLG+A++D+ YGW++ ++V+H+W + EAVQNH+ S+
Sbjct: 75 LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVE--ETVKHDWDRMIEAVQNHIGSL 132
Query: 206 NWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPG 265
NW RV LR+KKV Y NA G+FI H ++AT G++K +AE LIATG RP Y IPG
Sbjct: 133 NWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG 192
Query: 266 AKEHCISSDDIFSLEKPPGKTLVVGAGYIG 295
KE+CISSDD+FSL PGKTLVVGA Y+
Sbjct: 193 DKEYCISSDDLFSLPYCPGKTLVVGASYVA 222
Score = 90.3 bits (225), Expect = 2e-20
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 6/89 (6%)
Query: 22 GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL-- 79
LECAGFL G+G + TVM+RS+ LRGFDQ MA I E M E G+ F+ + +P+ V ++
Sbjct: 222 ALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEA 281
Query: 80 -ADGKLKVQYKNVAEVRQDNTHKYDYDLL 107
G+L+V ++ + + +Y+ +
Sbjct: 282 GTPGRLRVVAQS---TNSEEIIEGEYNTV 307
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 328 bits (842), Expect = e-109
Identities = 117/197 (59%), Positives = 145/197 (73%), Gaps = 1/197 (0%)
Query: 99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPK 158
KYDYDL+V+GGGSGGLAA KEAA +G K VLDYV P+P GTTWGLGGTCVNVGCIPK
Sbjct: 103 ESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPK 162
Query: 159 KLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKV 218
KLMHQA LL A++DA +GW + + HNW+ + E VQ+H+ S+NW +V LRD +V
Sbjct: 163 KLMHQAGLLSHALEDAEHFGWSLDR-SKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQV 221
Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFS 278
YLNA G+ I H V+ T KN + T+T I++ATG RP YP+IPGA E+ I+SDD+FS
Sbjct: 222 TYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLFS 281
Query: 279 LEKPPGKTLVVGAGYIG 295
L PGKTLV+GA Y+
Sbjct: 282 LPYFPGKTLVIGASYVA 298
Score = 82.4 bits (204), Expect = 1e-17
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 22 GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVT---- 77
LECAGFL LG + TVM+RS+ LRGFDQQMA+ + + M GV F C+P +
Sbjct: 298 ALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKV 357
Query: 78 ----KLADGKLKVQYKN 90
G L V+
Sbjct: 358 VDTENNKPGLLLVKGHY 374
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 323 bits (831), Expect = e-108
Identities = 124/196 (63%), Positives = 149/196 (76%), Gaps = 3/196 (1%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
+ +DLLV+GGGSGGLA AKEAA G+KV V DYV PSP+GT WGLGGTCVNVGCIPKKL
Sbjct: 4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKL 63
Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
MHQAALLG I+DA YGWE+ + VQHNW + EAVQNHVKS+NW RV L+D+KV Y
Sbjct: 64 MHQAALLGGMIRDAHHYGWEVA--QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKY 121
Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP-DIPGAKEHCISSDDIFSL 279
N F+D+H+V K G+ L+AE+I+IATGGRP YP + GA E+ I+SDDIF L
Sbjct: 122 FNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWL 181
Query: 280 EKPPGKTLVVGAGYIG 295
++ PGKTLVVGA Y+
Sbjct: 182 KESPGKTLVVGASYVA 197
Score = 98.0 bits (245), Expect = 4e-23
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 22 GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD 81
LECAGFL G+G + TVM+RS+PLRGFDQQM+ L+ E M G FL C+P + KL
Sbjct: 197 ALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPT 256
Query: 82 GKLKVQYKNVAEVRQDNTHKYDYDLL 107
+L+V +++ A +D +
Sbjct: 257 NQLQVTWEDHAS---GKEDTGTFDTV 279
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 322 bits (827), Expect = e-108
Identities = 125/198 (63%), Positives = 159/198 (80%), Gaps = 4/198 (2%)
Query: 99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQ-GTTWGLGGTCVNVGCIP 157
YDYDL+V+GGGS GLA AKEA +G +V LD+V P+P GT WG+GGTCVNVGCIP
Sbjct: 5 QGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIP 64
Query: 158 KKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK 217
KKLMHQA+LLGEA+ +A AYGW + + ++ +W L ++VQNH+KSVNWVTRV LRDKK
Sbjct: 65 KKLMHQASLLGEAVHEAAAYGWNVDD--KIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKK 122
Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIF 277
V+Y+N LG F+D H++ A +K+GE+ T+TA+ +IA GGRP YPDIPGA E+ I+SDD+F
Sbjct: 123 VEYINGLGSFVDSHTLLAKLKSGER-TITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLF 181
Query: 278 SLEKPPGKTLVVGAGYIG 295
SL++ PGKTLVVGAGYIG
Sbjct: 182 SLDREPGKTLVVGAGYIG 199
Score = 100 bits (252), Expect = 4e-24
Identities = 49/82 (59%), Positives = 60/82 (73%), Gaps = 1/82 (1%)
Query: 22 GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD 81
GLECAGFL GLG+ TVM+RS+ LRGFDQQMA+L+ M E G+ FL K +PLSV K D
Sbjct: 199 GLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDD 258
Query: 82 GKLKVQYKNVAEVRQDNTHKYD 103
GKL V+YKNV E +++ YD
Sbjct: 259 GKLLVKYKNV-ETGEESEDVYD 279
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 310 bits (796), Expect = e-103
Identities = 75/200 (37%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 102 YDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
YDL+V+G GSGGL A AA+ H ++V V+D LGGTCVNVGC+PKKL
Sbjct: 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKL 61
Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK-VD 219
M A + I+++ +GWE+ +SV+ NW L A V +N M D + +
Sbjct: 62 MVTGANYMDTIRESAGFGWELDR-ESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT 120
Query: 220 YLNALGKFIDQHSVE----ATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
+ G D H+V A + +TL E IL+ATG P + I G + CI+S++
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGD-DLCITSNE 179
Query: 276 IFSLEKPPGKTLVVGAGYIG 295
F L++ P + L VG GYI
Sbjct: 180 AFYLDEAPKRALCVGGGYIS 199
Score = 86.8 bits (216), Expect = 3e-19
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 22 GLECAGFLNGL---GFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVT 77
+E AG N G + R + LRGFD ++ K + E++ G++ P VT
Sbjct: 199 SIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVT 258
Query: 78 KLADGKLKVQYKN 90
K ADG V +++
Sbjct: 259 KNADGTRHVVFES 271
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 308 bits (792), Expect = e-103
Identities = 78/200 (39%), Positives = 109/200 (54%), Gaps = 8/200 (4%)
Query: 102 YDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
+DL+V+G GSGGL A AA +G++V V+D LGGTCVNVGC+PKKL
Sbjct: 6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKL 65
Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK-VD 219
M A + ++++ +GWE SV+ NW L A V +N M D + +D
Sbjct: 66 MVTGAQYMDHLRESAGFGWEFD-GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD 124
Query: 220 YLNALGKFIDQHSVE----ATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
+ G ++ V A K+ K+ L A++IL+ATG P P IPG EHCISS++
Sbjct: 125 FFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGI-EHCISSNE 183
Query: 276 IFSLEKPPGKTLVVGAGYIG 295
F L +PP + L VG G+I
Sbjct: 184 AFYLPEPPRRVLTVGGGFIS 203
Score = 86.9 bits (216), Expect = 3e-19
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 22 GLECAGFLNGL---GFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVT 77
+E AG N G T+ R ++ LRGFD+ + + + +++ G+ + P V+
Sbjct: 203 SVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVS 262
Query: 78 KLADGKLKVQYKN 90
DG V +++
Sbjct: 263 LNTDGSKHVTFES 275
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 305 bits (784), Expect = e-101
Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 12/200 (6%)
Query: 99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPK 158
T+ YD LV+GGGSGG+A+A+ AA++G K ++++ LGGTCVNVGC+PK
Sbjct: 7 TNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVE---------AKALGGTCVNVGCVPK 57
Query: 159 KLMHQAALLGEAIKDAVAYGWEIP---NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRD 215
K+M A+ L + A YG + + + NW ++ +V +N + + L
Sbjct: 58 KVMWYASDLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEK 117
Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDD 275
+KVD + +F +VE ++ + +A +IL+ATGG+ +P+ E SD
Sbjct: 118 EKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGTDSDG 177
Query: 276 IFSLEKPPGKTLVVGAGYIG 295
F LE+ P K +VVGAGYIG
Sbjct: 178 FFRLEEQPKKVVVVGAGYIG 197
Score = 87.6 bits (218), Expect = 2e-19
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 22 GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
G+E AG +GLG ++IR LR FD+ + I + + G++ + V K
Sbjct: 197 GIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNV 256
Query: 81 D-GKLKVQYKN 90
+ KLK+ +
Sbjct: 257 ETDKLKIHMND 267
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 297 bits (764), Expect = 6e-99
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
+DYDL V+GGGSGG+ + + AAA G+KV + + + GGTCV GC+PKKL
Sbjct: 4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAE---------EFRYGGTCVIRGCVPKKLY 54
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
A+ E +DA +GW + + +WA L A + + + + R L + + L
Sbjct: 55 VYASQFAEHFEDAAGFGWTVGESR---FDWAKLVAAKEQEIARLEGLYRKGLANAGAEIL 111
Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK 281
+ + ++V+ KT+TAE I+IA GG P+ D E CI+S++ F L
Sbjct: 112 DTRAELAGPNTVKLL---ASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPA 168
Query: 282 PPGKTLVVGAGYIG 295
P L+ G GYI
Sbjct: 169 LPESILIAGGGYIA 182
Score = 90.2 bits (225), Expect = 2e-20
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 22 GLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
+E A +GLG T++ R L FDQ M + + M E G+ L + + SV+ A
Sbjct: 182 AVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADA 241
Query: 81 DGKLKVQYKNVAEVRQD 97
DG+ E+ D
Sbjct: 242 DGRRVATTMKHGEIVAD 258
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 297 bits (762), Expect = 1e-98
Identities = 71/194 (36%), Positives = 115/194 (59%), Gaps = 18/194 (9%)
Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
+DL+ +GGGSGGLA A++AAA G++V +++ + LGGTCVNVGC+PKK+M
Sbjct: 3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIE---------SKALGGTCVNVGCVPKKVM 53
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
A+ L EA++DA +G + +W L ++ ++N + + +
Sbjct: 54 WYASHLAEAVRDAPGFGVQASGGT---LDWPRLVAGRDRYIGAINSFWDGYVERLGITRV 110
Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEK 281
+ +F+D H++E + L+A++I+IATGGRP P +PGA E I+SD F+L++
Sbjct: 111 DGHARFVDAHTIEVE-----GQRLSADHIVIATGGRPIVPRLPGA-ELGITSDGFFALQQ 164
Query: 282 PPGKTLVVGAGYIG 295
P + ++GAGYIG
Sbjct: 165 QPKRVAIIGAGYIG 178
Score = 88.3 bits (220), Expect = 7e-20
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 22 GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
G+E AG L G TV+ L FD ++ + E M G+ + ++ + A
Sbjct: 178 GIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDA 237
Query: 81 DGKLKVQYKN 90
G V
Sbjct: 238 QGTTLVAQDG 247
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 293 bits (753), Expect = 5e-97
Identities = 64/200 (32%), Positives = 108/200 (54%), Gaps = 17/200 (8%)
Query: 97 DNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI 156
+ +D+DL V+G GSGG+ AA+ A A G++V + + + +GGTCV GC+
Sbjct: 20 GSMGSFDFDLFVIGSGSGGVRAARLAGALGKRVAIAE---------EYRIGGTCVIRGCV 70
Query: 157 PKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK 216
PKKL A+ + ++ +GW+ + NW L A + + + R L++
Sbjct: 71 PKKLYFYASQYAQEFSKSIGFGWKYADPI---FNWEKLVAAKNKEISRLEGLYREGLQNS 127
Query: 217 KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY-PDIPGAKEHCISSDD 275
V + F+D+H++E ++ + ++AE ILIATG + I G+ + C++S++
Sbjct: 128 NVHIYESRAVFVDEHTLELSVT---GERISAEKILIATGAKIVSNSAIKGS-DLCLTSNE 183
Query: 276 IFSLEKPPGKTLVVGAGYIG 295
IF LEK P ++VG GYIG
Sbjct: 184 IFDLEKLPKSIVIVGGGYIG 203
Score = 85.3 bits (212), Expect = 1e-18
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 22 GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
G+E A +GLG T++ R + LR FD + +L+ + M G+ +++ V
Sbjct: 203 GVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQS-T 261
Query: 81 DGKLKVQYKN 90
+ V N
Sbjct: 262 ENCYNVVLTN 271
Score = 28.6 bits (65), Expect = 3.1
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 212 MLRDKKVDYLNALG-KFIDQHSVEATMKNGEKKTLTAEN--------ILIATGGRPN 259
LR D + A G I + +V + N +++ATG PN
Sbjct: 233 DLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPN 289
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 291 bits (748), Expect = 3e-96
Identities = 74/197 (37%), Positives = 103/197 (52%), Gaps = 19/197 (9%)
Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
YD LV+GGGSGGLA+A+ AA G + V++ LGGTCVNVGC+PKK+M
Sbjct: 19 ASYDYLVIGGGSGGLASARRAAELGARAAVVES---------HKLGGTCVNVGCVPKKVM 69
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
A+ E + D YG+ K NW ++E +V +N + + L ++ +
Sbjct: 70 WNTAVHSEFMHDHADYGFPSCEGK---FNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEII 126
Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYP---DIPGAKEHCISSDDIFS 278
F + K TA +ILIATGG P+ P IPGA I+SD F
Sbjct: 127 RGHAAFTSDPKPTIEVSG---KKYTAPHILIATGGMPSTPHESQIPGA-SLGITSDGFFQ 182
Query: 279 LEKPPGKTLVVGAGYIG 295
LE+ PG++++VGAGYI
Sbjct: 183 LEELPGRSVIVGAGYIA 199
Score = 92.2 bits (230), Expect = 4e-21
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 22 GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
+E AG L+ LG ++MIR LR FD ++ EE+ GV L V K
Sbjct: 199 AVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTL 258
Query: 81 DGKLKVQYKNVAEVRQDNTHKYDYDLL 107
G V T D D L
Sbjct: 259 SGLEVSMVTAVPGRLPVMTMIPDVDCL 285
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 279 bits (717), Expect = 6e-92
Identities = 76/195 (38%), Positives = 110/195 (56%), Gaps = 19/195 (9%)
Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLM 161
YD + +GGGSGG+A+ AA +G+K +++ LGGTCVNVGC+PKK+M
Sbjct: 3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEA---------KELGGTCVNVGCVPKKVM 53
Query: 162 HQAALLGEAIKD-AVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
AA + EAI YG++ K NW L + ++ ++ +L VD
Sbjct: 54 WHAAQIREAIHMYGPDYGFDTTINK---FNWETLIASRTAYIDRIHTSYENVLGKNNVDV 110
Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLE 280
+ +F+D ++E +T+TA++ILIATGGRP++PDIPG E+ I SD F+L
Sbjct: 111 IKGFARFVDAKTLEVN-----GETITADHILIATGGRPSHPDIPGV-EYGIDSDGFFALP 164
Query: 281 KPPGKTLVVGAGYIG 295
P + VVGAGYIG
Sbjct: 165 ALPERVAVVGAGYIG 179
Score = 91.4 bits (228), Expect = 7e-21
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 22 GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
G+E G +NGLG + PL FD +++ + E M G +P +V K
Sbjct: 179 GVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNT 238
Query: 81 DGKLKVQYKN 90
DG L ++ ++
Sbjct: 239 DGSLTLELED 248
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 255 bits (654), Expect = 6e-82
Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 24/202 (11%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMH 162
YDL+V+GGGSGG+AAA+ AA H KV +++ LGGTCVNVGC+PKK+M
Sbjct: 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVE---------KSRLGGTCVNVGCVPKKIMF 52
Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
AA + + ++++ YG++ N L E +++ +N + R L KVD
Sbjct: 53 NAASVHDILENSRHYGFDT----KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYE 108
Query: 223 ALGKFIDQHSVE---------ATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISS 273
F+ ++ + ++ L NILIA G +P +P + G E+ ISS
Sbjct: 109 GTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGI-ENTISS 167
Query: 274 DDIFSLEKPPGKTLVVGAGYIG 295
D+ F++++ K +VG+GYI
Sbjct: 168 DEFFNIKESK-KIGIVGSGYIA 188
Score = 79.6 bits (197), Expect = 8e-17
Identities = 12/70 (17%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 22 GLECAGFLNGLGFNATVMIR-SVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
+E + LG ++ + R + LR FD+ + ++ +M + ++ + + + K++
Sbjct: 188 AVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVS 247
Query: 81 DGKLKVQYKN 90
D L + +
Sbjct: 248 DKNLSIHLSD 257
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 159 bits (406), Expect = 9e-46
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 17/200 (8%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIP-KKLM 161
+ V+G G +AAA +A G +V +++ +GT +GGTCVNVGC+P K ++
Sbjct: 4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIE------RGT---IGGTCVNVGCVPSKIMI 54
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSV--NWVTRVMLRDKKVD 219
A + + G + + L Q V + ++ + +
Sbjct: 55 RAAHIAHLRRESPFDGGIAATVPTI---DRSKLLAQQQARVDELRHAKYEGILGGNPAIT 111
Query: 220 YLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE-HCISSDDIFS 278
++ +F D S+ + G ++ + + L+ATG P P IPG KE +S + +
Sbjct: 112 VVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALA 171
Query: 279 LEKPPGKTLVVGAGYIGKLE 298
+ P + V+G+ + LE
Sbjct: 172 SDTIPERLAVIGSSVVA-LE 190
Score = 28.6 bits (65), Expect = 2.5
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 226 KFIDQHSVEATMKNGEKKTLTAEN-------ILIATGGRPN 259
+ ++ + LT + +L+ATG PN
Sbjct: 232 EVLEHTQASQVAHMDGEFVLTTTHGELRADKLLVATGRTPN 272
Score = 27.9 bits (63), Expect = 4.7
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 22 GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLAD 81
LE A LG TV+ R+ D + + + G+ L V D
Sbjct: 188 ALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAH-MD 246
Query: 82 GKLKVQYKN 90
G+ + +
Sbjct: 247 GEFVLTTTH 255
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 155 bits (393), Expect = 2e-43
Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 22/203 (10%)
Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWG-LGGTCVNVGCIPKKL 160
+YD + +GGG+ G + A G + +++D W LGG+C + C+P L
Sbjct: 42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVD---------RWPFLGGSCPHNACVPHHL 92
Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDK--KV 218
A + W P++ + + + + + +++
Sbjct: 93 FSDCAAELMLARTFSGQYW-FPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLE 151
Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI--SSDDI 276
LN K ID H+VE K A+N+++A G P D+PG + + +
Sbjct: 152 YILNCPAKVIDNHTVE-----AAGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLV 206
Query: 277 FSLEKPPGKTLVV-GAGYIGKLE 298
L+ PG T+VV G +E
Sbjct: 207 EELDYEPGSTVVVVGGSKTA-VE 228
Score = 43.1 bits (102), Expect = 8e-05
Identities = 13/89 (14%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 22 GLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
+E F N G +++R+ D + + + M E G+ + + + A
Sbjct: 226 AVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDA 285
Query: 81 DGKLKVQYKNVAEVRQDNTHKYDYD-LLV 108
+G+++ V + + + + D + +
Sbjct: 286 NGRVQA----VVAMTPNGEMRIETDFVFL 310
Score = 29.2 bits (66), Expect = 2.2
Identities = 2/22 (9%), Positives = 8/22 (36%)
Query: 238 KNGEKKTLTAENILIATGGRPN 259
+ + + + + G +P
Sbjct: 296 TPNGEMRIETDFVFLGLGEQPR 317
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 143 bits (362), Expect = 3e-39
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 19/200 (9%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
+ D+ ++G G+ G+ A + A H KV++++ G G TC VGC+P KL
Sbjct: 6 VINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIE------GGA---YGTTCARVGCMPSKL 56
Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHV-KSVNWVTRVMLRDKKVD 219
+ AA +G ++ + N + + +Q + V +V + + D
Sbjct: 57 LIAAADASYHASQTDLFGIQVDRISV---NGKAVMKRIQTERDRFVGFVVESVESFDEQD 113
Query: 220 YLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNY-PDIPGAKEHCISSDDIFS 278
+ KF+D+H+++ + + A+ I+IATG RPNY + A +++D++F
Sbjct: 114 KIRGFAKFLDEHTLQV----DDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNLFE 169
Query: 279 LEKPPGKTLVVGAGYIGKLE 298
L P V G G IG LE
Sbjct: 170 LNDLPKSVAVFGPGVIG-LE 188
Score = 32.9 bits (76), Expect = 0.12
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 229 DQHSVEATMKNGEKKTLTAENILIATGGRPN 259
D V K+G+K T + + +L ATG + N
Sbjct: 245 DAVEVIYFDKSGQKTTESFQYVLAATGRKAN 275
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 142 bits (361), Expect = 4e-39
Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 10/199 (5%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGGTCVNVGCIPKK-L 160
+D++V+G G GG AA ++A G K +++ Y + LGGTC+NVGCIP K L
Sbjct: 3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA---LGGTCLNVGCIPSKAL 59
Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
+ + EA + +G V + + V+++ +++ V
Sbjct: 60 LDSSYKFHEAHESFKLHGISTGEVAI---DVPTMIARKDQIVRNLTGGVASLIKANGVTL 116
Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIFSL 279
GK + VE T +G + L EN+++A+G +P P P ++ + S
Sbjct: 117 FEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDF 176
Query: 280 EKPPGKTLVVGAGYIGKLE 298
+ PGK V+GAG IG LE
Sbjct: 177 QNVPGKLGVIGAGVIG-LE 194
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 135 bits (343), Expect = 1e-36
Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 13/197 (6%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LMH 162
YD++V+GGG GG A+ +AA G K ++ +G LGGTC+NVGCIP K L+H
Sbjct: 3 YDVVVIGGGPGGYVASIKAAQLGMKTACVE-----KRGA---LGGTCLNVGCIPSKALLH 54
Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
L +A + YG + + V + A +++ + VK + + + KV Y
Sbjct: 55 ATHLYHDAHANFARYG--LMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYK 112
Query: 223 ALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIFSLEK 281
G F HS+ +G+++ L + +IATG P P +P ++ +SS +L +
Sbjct: 113 GEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPR 172
Query: 282 PPGKTLVVGAGYIGKLE 298
P +V+G G IG LE
Sbjct: 173 VPKTMVVIGGGVIG-LE 188
Score = 32.1 bits (74), Expect = 0.22
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 232 SVEATMKNGEKKTLTAENILIATGGRPN 259
S+E KNG+++T+T E +L++ G RP
Sbjct: 250 SLEVEGKNGKRETVTCEALLVSVGRRPF 277
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 134 bits (340), Expect = 3e-36
Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 14/198 (7%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
+ D++++GGG GG AA +AA G K ++ +G LGGTC+NVGCIP K L+
Sbjct: 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIE-----KRGA---LGGTCLNVGCIPSKALL 57
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
H + + EA +G ++ NV+ + A + V ++ + + KV Y+
Sbjct: 58 HSSHMYHEAKHSFANHGVKVSNVEI---DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYV 114
Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIFSLE 280
GKF+ + GE + ++I+IATG + P + ++ +SS +L
Sbjct: 115 KGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALS 174
Query: 281 KPPGKTLVVGAGYIGKLE 298
+ P K +V+GAGYIG LE
Sbjct: 175 EIPKKLVVIGAGYIG-LE 191
Score = 29.8 bits (68), Expect = 1.3
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 238 KNGEKKTLTAENILIATGGRPN 259
GE+ + A+ +L++ G P
Sbjct: 259 AGGEQTIIEADVVLVSAGRTPF 280
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 133 bits (338), Expect = 8e-36
Identities = 71/203 (34%), Positives = 98/203 (48%), Gaps = 22/203 (10%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWG-LGGTCVNVGCIPKK-L 160
YDL+V+G G GG A +AA G KV V++ GGTC+NVGCIP K L
Sbjct: 25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVE---------KRSTYGGTCLNVGCIPSKAL 75
Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
+H + + +A A G E+ N K N + VKS + + K+D
Sbjct: 76 LHASEMFHQAQHGLEALGVEVANPK---LNLQKMMAHKDATVKSNVDGVSFLFKKNKIDG 132
Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK-----EHCISSDD 275
GK + Q V T + GE++ L A+N++IATG IPG + + +SS
Sbjct: 133 FQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIPGVEVAFDEKTIVSSTG 190
Query: 276 IFSLEKPPGKTLVVGAGYIGKLE 298
+LEK P +VVG G IG LE
Sbjct: 191 ALALEKVPASMIVVGGGVIG-LE 212
Score = 29.4 bits (67), Expect = 1.7
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 238 KNGEKKTLTAENILIATGGRPN 259
K GE TL AE +LIATG +P+
Sbjct: 280 KGGEATTLDAEVVLIATGRKPS 301
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 132 bits (335), Expect = 1e-35
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 28/201 (13%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
YD++VLG G GG AA AA G +++ GG C+NVGCIP K L+
Sbjct: 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVE------PKY---WGGVCLNVGCIPSKALL 53
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANL----REAVQNHVKSVNWVTRVMLRDK- 216
A L+ KDA A+G V ++ R+ + V V+ L K
Sbjct: 54 RNAELVHIFTKDAKAFGISG----EVTFDYGIAYDRSRKVAEGRVAGVH-----FLMKKN 104
Query: 217 KVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK--EHCISSD 274
K+ ++ G F D +++ + +G +++T +N +IATG +PG + ++ +
Sbjct: 105 KITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTR--LVPGTSLSANVVTYE 162
Query: 275 DIFSLEKPPGKTLVVGAGYIG 295
+ + P ++ GAG IG
Sbjct: 163 EQILSRELPKSIIIAGAGAIG 183
Score = 29.4 bits (67), Expect = 1.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 232 SVEATM-KNGEKKTLTAENILIATGGRPN 259
V T+ K+G + L AE +L A G PN
Sbjct: 244 QVTVTVTKDGVAQELKAEKVLQAIGFAPN 272
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 132 bits (335), Expect = 2e-35
Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 17/201 (8%)
Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWG-LGGTCVNVGCIPKK- 159
D D+ V+G G GG AA +AA G K + ++ LGGTC+NVGCIP K
Sbjct: 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE---------KNETLGGTCLNVGCIPSKA 55
Query: 160 LMHQAALLGEA-IKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKV 218
L++ + A D + G E+ V+ N + E VK++ + + KV
Sbjct: 56 LLNNSHYYHMAHGTDFASRGIEMSEVRL---NLDKMMEQKSTAVKALTGGIAHLFKQNKV 112
Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIF 277
++N GK ++ V AT +G + + +NILIATG +P I ++ +SS
Sbjct: 113 VHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGAL 172
Query: 278 SLEKPPGKTLVVGAGYIGKLE 298
SL+K P K +V+GAG IG +E
Sbjct: 173 SLKKVPEKMVVIGAGVIG-VE 192
Score = 28.6 bits (65), Expect = 2.7
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 238 KNGEKKTLTAENILIATGGRPN 259
G+ + +T + +L+ G RP
Sbjct: 262 SGGKAEVITCDVLLVCIGRRPF 283
Score = 27.9 bits (63), Expect = 5.6
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 47 GFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYD- 105
G D +++K + + G F TK +DGK+ V + + D
Sbjct: 217 GIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASG---GKAEVITCDV 273
Query: 106 LLV 108
LLV
Sbjct: 274 LLV 276
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 129 bits (328), Expect = 1e-34
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 20/199 (10%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
+ + LV+G G GG AA AA G+KV +++ +G LGG C+NVGCIP K L+
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVE------KGN---LGGVCLNVGCIPSKALI 53
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
+ +A K + G + NV ++A ++E + VK + +L+ KV+ +
Sbjct: 54 SASHRYEQA-KHSEEMGIKAENVTI---DFAKVQEWKASVVKKLTGGVEGLLKGNKVEIV 109
Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK--EHCISSDDIFSL 279
F+D ++V + +T T +N +IATG RP ++P K + S +L
Sbjct: 110 KGEAYFVDANTVRVVNGDS-AQTYTFKNAIIATGSRPI--ELPNFKFSNRILDSTGALNL 166
Query: 280 EKPPGKTLVVGAGYIGKLE 298
+ P +V+G GYIG +E
Sbjct: 167 GEVPKSLVVIGGGYIG-IE 184
Score = 28.2 bits (64), Expect = 3.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 238 KNGEKKTLTAENILIATGGRPN 259
NGE KT+ A+ +L+ G RPN
Sbjct: 250 ANGETKTIDADYVLVTVGRRPN 271
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 129 bits (327), Expect = 2e-34
Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 19/204 (9%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
+D++++GGG G AA +AA G ++ +G LGGTC+NVGCIP K L+
Sbjct: 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVE-----KRGK---LGGTCLNVGCIPSKALL 56
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
+ + L + +A G ++ ++ N AN ++A + VK + ++ + KV Y
Sbjct: 57 NNSHLFHQMHTEAQKRGIDVN--GDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYY 114
Query: 222 NALGKFIDQHSVEATMKNG------EKKTLTAENILIATGGRP-NYPDIPGAKEHCISSD 274
G F D+ + T +G E L +NI++ATG +P I +E +SS
Sbjct: 115 KGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSST 174
Query: 275 DIFSLEKPPGKTLVVGAGYIGKLE 298
SL++ P + ++G G IG LE
Sbjct: 175 GALSLKEIPKRLTIIGGGIIG-LE 197
Score = 29.0 bits (66), Expect = 2.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 238 KNGEKKTLTAENILIATGGRPN 259
K +++ L AE +L+A G RP
Sbjct: 267 KTNKQENLEAEVLLVAVGRRPY 288
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 128 bits (323), Expect = 1e-33
Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 22/203 (10%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
+++LGGG G AA AA + + + G+GG V C+P K
Sbjct: 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD------GIGGAAVLDDCVPSKTFIA 56
Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANL----REAVQNHVKSVNWVTRVMLRDKKVD 219
+ L ++ A G+ I + + + + + + L V
Sbjct: 57 STGLRTELRRAPHLGFHI-DFDDAKISLPQIHARVKTLAAAQSADITA----QLLSMGVQ 111
Query: 220 YLNALGKFID------QHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCIS 272
+ G+ ID +H ++AT +G A+ +L+ATG P P E ++
Sbjct: 112 VIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDGERILT 171
Query: 273 SDDIFSLEKPPGKTLVVGAGYIG 295
++ L+ P +VVG+G G
Sbjct: 172 WRQLYDLDALPDHLIVVGSGVTG 194
Score = 29.1 bits (66), Expect = 2.0
Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 22 GLECAGFLNGLGFNATV---MIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTK 78
G E LG TV +P D A ++ E AE GV SVT+
Sbjct: 194 GAEFVDAYTELGVPVTVVASQDHVLP--YEDADAALVLEESFAERGVRLFKNARAASVTR 251
Query: 79 LADGKLKVQYKNVAEVRQD 97
G + V + V
Sbjct: 252 TGAG-VLVTMTDGRTVEGS 269
Score = 28.7 bits (65), Expect = 3.1
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 232 SVEATMKNGEKKTLTAENILIATGGRPN 259
V TM +G +T+ + L+ G PN
Sbjct: 255 GVLVTMTDG--RTVEGSHALMTIGSVPN 280
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 126 bits (318), Expect = 3e-33
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 29/204 (14%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
YD++V+G G G A A V++ D P+G LGG C+ GC+P K +
Sbjct: 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMAD-----PKGE---LGGNCLYSGCVPSKTVR 55
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVT---RVMLRDKKV 218
+ + + +++ +++ + R M + + +
Sbjct: 56 EVIQTA-WRLTNIANVKIPL--------DFSTVQDRKDYVQELR--FKQHKRNMSQYETL 104
Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDI-- 276
+ K D V G++ ++IA+G +PG E+C++SDDI
Sbjct: 105 TFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGV-EYCLTSDDIFG 163
Query: 277 --FSLEKPPGKTLVVGAGYIGKLE 298
S K P +++GAGYIG LE
Sbjct: 164 YKTSFRKLPQDMVIIGAGYIG-LE 186
Score = 32.1 bits (74), Expect = 0.24
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 229 DQHSVEATMKNGEKKTLTAENILIATGGRPN 259
D++ V + K+G KK++ ++++A G RP
Sbjct: 243 DEYEVIYSTKDGSKKSIFTNSVVLAAGRRPV 273
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 124 bits (315), Expect = 1e-32
Identities = 71/209 (33%), Positives = 102/209 (48%), Gaps = 28/209 (13%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
+YD++VLGGG GG +AA AA G KV +++ T LGG C+NVGCIP K L+
Sbjct: 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVE-----RYKT---LGGVCLNVGCIPSKALL 57
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
H AA++ E + A G + P + + LR V + M + +KVD +
Sbjct: 58 HNAAVIDEV-RHLAANGIKYPEPEL---DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVI 113
Query: 222 NALGKFIDQHSVE----------ATMKNGEKKTLTAENILIATGGRPNYPDIPGAK--EH 269
G+F+D H +E GEKK + +N +IA G R +P
Sbjct: 114 QGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT--KLPFIPEDPR 171
Query: 270 CISSDDIFSLEKPPGKTLVVGAGYIGKLE 298
I S +L++ PGK L++G G IG LE
Sbjct: 172 IIDSSGALALKEVPGKLLIIGGGIIG-LE 199
Score = 31.3 bits (72), Expect = 0.35
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 232 SVEATMKNGEKKTLTAENILIATGGRPN 259
V N K+ + +L+A G PN
Sbjct: 260 YVTFEGANAPKEPQRYDAVLVAAGRAPN 287
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 123 bits (310), Expect = 4e-32
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 21/199 (10%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
LL++GGG GG AA A G ++++ LGGTC+N+GCIP K L+
Sbjct: 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE---------GQALGGTCLNIGCIPSKALI 55
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
H A +A + I +V S + + V + +L+ V +
Sbjct: 56 HVAEQFHQASRFTEPSPLGI-SVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVV 114
Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK--EHCISSDDIFSL 279
+ K +D VE + + + E++L+ATG ++P ISS + +
Sbjct: 115 HGWAKVLDGKQVEV-----DGQRIQCEHLLLATGSSSV--ELPMLPLGGPVISSTEALAP 167
Query: 280 EKPPGKTLVVGAGYIGKLE 298
+ P +VVG GYIG LE
Sbjct: 168 KALPQHLVVVGGGYIG-LE 185
Score = 27.9 bits (63), Expect = 4.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 238 KNGEKKTLTAENILIATGGRPN 259
G + L A+ +L+A G RP
Sbjct: 248 GKGGQLRLEADRVLVAVGRRPR 269
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 122 bits (309), Expect = 6e-32
Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 19/197 (9%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LMH 162
YDLLV+G G GG AA AA G KV V++ + LGGTC+ VGCIP K L+
Sbjct: 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVE-----KEKA---LGGTCLRVGCIPSKALLE 53
Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
+ EA K G ++ V+ + L V++ + + +
Sbjct: 54 TTERIYEAKKG--LLGAKVKGVEL---DLPALMAHKDKVVQANTQGVEFLFKKNGIARHQ 108
Query: 223 ALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRP-NYPDIPGAKEHCISSDDIFSLEK 281
+F+ + V + L A ILIATG P P E ++S + S +
Sbjct: 109 GTARFLSERKVLVE---ETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPE 165
Query: 282 PPGKTLVVGAGYIGKLE 298
P + +VVG G IG LE
Sbjct: 166 VPKRLIVVGGGVIG-LE 181
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 118 bits (297), Expect = 3e-30
Identities = 58/200 (29%), Positives = 89/200 (44%), Gaps = 26/200 (13%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-LM 161
YDL+V+G G GG AA AA G KV+ ++ G +GG C+NVGCIP K L+
Sbjct: 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVE------AGE---VGGVCLNVGCIPTKALL 56
Query: 162 HQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL 221
H A L K A +G + + + L VK + +L+ V+ L
Sbjct: 57 HAAETLHHL-KVAEGFGLKA----KPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELL 111
Query: 222 NALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAK--EHCISSDDIFSL 279
+ + VE + A+++++ATG P ++ G E S +
Sbjct: 112 RGFARLVGPKEVEVG-----GERYGAKSLILATGSEPL--ELKGFPFGEDVWDSTRALKV 164
Query: 280 EKP-PGKTLVVGAGYIGKLE 298
E+ P + LV+G G +G LE
Sbjct: 165 EEGLPKRLLVIGGGAVG-LE 183
Score = 28.6 bits (65), Expect = 3.0
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 238 KNGEKKTLTAENILIATGGRPN 259
+ GE + + + +L+A G +P
Sbjct: 251 EGGEGEEVVVDKVLVAVGRKPR 272
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 52.7 bits (127), Expect = 5e-08
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGG 148
YDL+++G GS G AA A G V++ D ++ P G+ G
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTR 48
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 51.6 bits (124), Expect = 2e-07
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 250 ILIATGGRPNYPDIPGA-KEHCISSDDIFSLEKPPGKT-LVVGAGYIG 295
++A+G P P I G +S D+ + P G ++G G IG
Sbjct: 459 TILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIG 506
Score = 38.1 bits (89), Expect = 0.003
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 23/154 (14%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL 166
++G G G A + G + WG+ + G + + M
Sbjct: 498 AIIGCGGIGFDTAMYLSQPGESTSQ----NIAGFCNEWGIDSSLQQAGGLSPQGMQIPRS 553
Query: 167 LGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYL-NALG 225
+ + +Q + + + K+ W+ R L + V +
Sbjct: 554 PRQ--------------IVMLQRKASKPGQGLG---KTTGWIHRTTLLSRGVKMIPGVSY 596
Query: 226 KFIDQHSVEATMKNGEKKTLTAENILIATGGRPN 259
+ ID + NGE + L +N++I G PN
Sbjct: 597 QKIDDDGLHVV-INGETQVLAVDNVVICAGQEPN 629
Score = 33.8 bits (78), Expect = 0.076
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 17/71 (23%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK------- 159
V+G G GLA A AAA G +V + D + +GG IP K
Sbjct: 377 AVVGAGPAGLAFAINAAARGHQVTLFD---AHSE-----IGGQFNIAKQIPGKEEFYETL 428
Query: 160 --LMHQAALLG 168
+ G
Sbjct: 429 RYYRRMIEVTG 439
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 50.9 bits (122), Expect = 2e-07
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGG 148
YD++V+GGG GLA A + A G +V+VL+ + + G T G
Sbjct: 5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAER 50
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 50.5 bits (120), Expect = 3e-07
Identities = 38/222 (17%), Positives = 68/222 (30%), Gaps = 49/222 (22%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQ-GTTWGLGGTCVNVGCIPKKLMH 162
+DL+ +G G +A A + L+ + Q W L+
Sbjct: 31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH-----------GNTLVS 79
Query: 163 QAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
Q+ L +KD V+ + N S +++ N V +N T R + DYL
Sbjct: 80 QSELQISFLKDLVS----LRNPTS-PYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLR 134
Query: 223 ALGKFIDQH--------SVE--------------ATMKNGEKKTLTAENILIATGGRPNY 260
+ + +E + +GE+ T ++++ GG P
Sbjct: 135 WVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRI 194
Query: 261 PDIPGA---KEHCISS-------DDIFSLEKPPGKTLVVGAG 292
P + A P K ++G G
Sbjct: 195 PQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGG 236
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 49.1 bits (118), Expect = 1e-06
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 21/85 (24%)
Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
H+VE ++ GE++TL + +++A G + N P + G + + +
Sbjct: 95 AAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEG-----MDLAGVTPVTNLDEAEF 149
Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
K ++VG G+IG LE
Sbjct: 150 VQHAISAGEVSKAVIVGGGFIG-LE 173
Score = 29.8 bits (68), Expect = 1.1
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 22 GLECA-GFLNGLGFNATVMIRS--VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTK 78
GLE A + G + TV+ + + + +++++ ++ + V V +
Sbjct: 171 GLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVH---TGEKVVR 227
Query: 79 LADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
L KV + D DL++L G
Sbjct: 228 LEGENGKV------ARVITDKRTLDADLVILAAG 255
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 48.7 bits (117), Expect = 1e-06
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 21/85 (24%)
Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
V + +G + + + +L++ G P P IPG + + SL
Sbjct: 87 AAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPG-----VDNPLTHSLRNIPDMDR 141
Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
VVG G+IG LE
Sbjct: 142 ILQTIQMNNVEHATVVGGGFIG-LE 165
Score = 34.1 bits (79), Expect = 0.053
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 22 GLECAGFLNGLGFNATVMIRSV-PLRGFDQQMAKLICEEMAEGGVHFL----------HK 70
GLE L+ LG T++ + + D++MA + + + GV
Sbjct: 163 GLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQV 222
Query: 71 CLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
++ + K + N + DLL++ G
Sbjct: 223 QTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIG 264
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 48.6 bits (117), Expect = 1e-06
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 19/83 (22%)
Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
+ +++ + E+KT + +++ TG +P P IPG I S ++
Sbjct: 87 ETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPG-----IDSSRVYLCKNYNDAKK 141
Query: 280 ----EKPPGKTLVVGAGYIGKLE 298
++G+GYIG E
Sbjct: 142 LFEEAPKAKTITIIGSGYIG-AE 163
Score = 32.9 bits (76), Expect = 0.12
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 22 GLECAGFLNGLGFNATV--MIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL 79
G E A + +N + V + FD++ ++ ++ GV+ + L V
Sbjct: 161 GAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLV---LGSKVAAF 217
Query: 80 ADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
+ ++ + + + D+ +L G
Sbjct: 218 EEVDDEI------ITKTLDGKEIKSDIAILCIG 244
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 48.1 bits (115), Expect = 1e-06
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 98 NTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD-YVIPSPQGTTWGLGG 148
+TH +D++V+G GS G+AA + A G K +++D + P G+ G
Sbjct: 1 STH---FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTR 49
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 48.2 bits (116), Expect = 2e-06
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 21/85 (24%)
Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
+H V + +GE++ + ++I+ G P DIPG D+I+ +
Sbjct: 85 KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPG-----KDLDNIYLMRGRQWAIK 139
Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
+ +V+G+GYIG +E
Sbjct: 140 LKQKTVDPEVNNVVVIGSGYIG-IE 163
Score = 32.1 bits (74), Expect = 0.22
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 22 GLECAGFLNGLGFNATV--MIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL 79
G+E A G TV ++ D++ ++ EEM + +V +
Sbjct: 161 GIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIA---TGETVERY 217
Query: 80 -ADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
DG+ V +V D YD DL+V+ G
Sbjct: 218 EGDGR-------VQKVVTDKN-AYDADLVVVAVG 243
Score = 27.8 bits (63), Expect = 5.6
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 213 LRDKKVD-YLN-ALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN 259
+ + + ++ V+ + + A+ +++A G RPN
Sbjct: 201 MEANNITIATGETVERYEGDGRVQKVVTDK--NAYDADLVVVAVGVRPN 247
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 47.9 bits (115), Expect = 2e-06
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 21/85 (24%)
Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
++ V A K + + + +LIATG RP P+ G + L
Sbjct: 122 EKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEG-----RDLQGVHLLKTIPDAER 176
Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
++G G IG LE
Sbjct: 177 ILKTLETNKVEDVTIIGGGAIG-LE 200
Score = 33.3 bits (77), Expect = 0.11
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 22 GLECAGFLNGLGFNATVMIRSV-PLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
GLE A LG ++ R+ +D MA+ I +E + + L +V
Sbjct: 198 GLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEIL---TNENVKAFK 254
Query: 81 DGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
+ V V D Y DL+++ G
Sbjct: 255 GN------ERVEAVETDKG-TYKADLVLVSVG 279
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 48.1 bits (115), Expect = 2e-06
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
Y+ D++V G G G+AA+ EAA G V+VL+
Sbjct: 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLE 71
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 48.0 bits (115), Expect = 2e-06
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
++ ++ + E + ++++ G +P P IPG +E + +F+L
Sbjct: 122 EEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEE----AKALFTLRNVPDTDR 177
Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
EK P V+G G+IG +E
Sbjct: 178 IKAYIDEKKPRHATVIGGGFIG-VE 201
Score = 33.3 bits (77), Expect = 0.098
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 22 GLECAGFLNGLGFNATVMIRSV-PLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
G+E L G T++ + + D +MA + E M V + V L
Sbjct: 199 GVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELV---FEDGVDALE 255
Query: 81 DGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
+ V ++ + D+L+L G
Sbjct: 256 EN------GAVVRLKSGSV--IQTDMLILAIG 279
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 47.9 bits (115), Expect = 2e-06
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 21/85 (24%)
Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
+D V +NG +K+ + ++ A G P P I G ++ +F+
Sbjct: 85 VDTGYVRVR-ENGGEKSYEWDYLVFANGASPQVPAIEG-----VNLKGVFTADLPPDALA 138
Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
+ +++G GYIG +E
Sbjct: 139 IREYMEKYKVENVVIIGGGYIG-IE 162
Score = 27.5 bits (62), Expect = 5.7
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 22 GLECAGFLNGLGFNATVMIRS--VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL 79
G+E A G N T+++R V R FD+++ ++ E++ + V+ L K+
Sbjct: 160 GIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKL-KKHVNLR---LQEITMKI 215
Query: 80 ADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
+ V +V D +Y +L++L G
Sbjct: 216 EGE------ERVEKVVTDAG-EYKAELVILATG 241
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 47.7 bits (114), Expect = 3e-06
Identities = 33/201 (16%), Positives = 54/201 (26%), Gaps = 70/201 (34%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL 166
LV+G G GL AA+ G V++ + LGG +P
Sbjct: 395 LVVGAGPSGLEAARALGVRGYDVVLAE---AGRD-----LGGRVTQESALPGL------- 439
Query: 167 LGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGK 226
W + + V+ V+
Sbjct: 440 ----------------------SAWGRV----------KEYREAVLAELPNVEIY--RES 465
Query: 227 FIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD--------IPGA-KEHCISSDDIF 277
+ + E+++ ATG +P A + DD+F
Sbjct: 466 PMTGDDIVE---------FGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLF 516
Query: 278 SLEKPPGKTLVV---GAGYIG 295
+ P GK +VV Y+G
Sbjct: 517 AGRLPDGKKVVVYDDDHYYLG 537
Score = 27.3 bits (61), Expect = 8.3
Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 212 MLRDKKVDYL-NALGKFIDQHSVE-ATMKNGEKKTLTAENILIATGGRPN 259
L + V + + + V ++ L + +++ T P
Sbjct: 576 RLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR 625
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 47.3 bits (112), Expect = 4e-06
Identities = 17/35 (48%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 100 HKYDY-DLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
H + + D+LV+G G GLAAA+EA+ G +V++LD
Sbjct: 124 HVHVHTDVLVVGAGPAGLAAAREASRSGARVMLLD 158
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 46.4 bits (111), Expect = 6e-06
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 22/90 (24%)
Query: 229 DQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPG------AKEHCISSDDIFSL--- 279
D +V A + +G+ T + ++ ATG +P P I G + E + +++ +
Sbjct: 121 DAKTVTA-LVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLY 179
Query: 280 -----------EKPPGKTLVVGAGYIGKLE 298
K + VVGAGYIG +E
Sbjct: 180 QNSADVIAKLENKDIKRVAVVGAGYIG-VE 208
Score = 31.8 bits (73), Expect = 0.27
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 22 GLECAGFLNGLGFNATV--MIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL 79
G+E A G + ++ + +D+ + L+ + M E G+ +V ++
Sbjct: 206 GVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLA---FGETVKEV 262
Query: 80 ADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
A V ++ D +YD D+++L G
Sbjct: 263 AGN------GKVEKIITDKN-EYDVDMVILAVG 288
Score = 27.5 bits (62), Expect = 6.3
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 213 LRDKKVD-YLN-ALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPN 259
+ + + + + VE + + + +++A G RPN
Sbjct: 246 MEEHGIQLAFGETVKEVAGNGKVEKIITDK--NEYDVDMVILAVGFRPN 292
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 46.6 bits (111), Expect = 6e-06
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 57 CEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHK-------YDYDLLVL 109
C + E + ++C + + K + QD K +LV+
Sbjct: 68 CHKGHEEPKFYCNECHSFDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVV 127
Query: 110 GGGSGGLAAAKEAAAHGRKVIVLD 133
G GS G A+ A G VI++D
Sbjct: 128 GAGSAGFNASLAAKKAGANVILVD 151
Score = 27.3 bits (61), Expect = 6.7
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 233 VEATMKNGEKKTLTAENILIATGG 256
K+ + A+++++ATGG
Sbjct: 287 AVVHGKHTGYYMIGAKSVVLATGG 310
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 45.6 bits (109), Expect = 9e-06
Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 62/180 (34%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTW-----GLGGTCVNVGCIP 157
+D++++GG GL+AA + + ++++D + + G G P
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGK------AP 55
Query: 158 KKLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKK 217
++ EA + Y ++ VT
Sbjct: 56 ------GEIIAEARRQIERYP-------TIHWVEG--------------RVTDAKGSF-- 86
Query: 218 VDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE-------HC 270
G+F + G TA +++A G P+I G +E HC
Sbjct: 87 -------GEF------IVEIDGGR--RETAGRLILAMGVTDELPEIAGLRERWGSAVFHC 131
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 45.6 bits (108), Expect = 1e-05
Identities = 28/204 (13%), Positives = 58/204 (28%), Gaps = 48/204 (23%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
+ + ++G G+ G+ A G +++ +
Sbjct: 5 HKVAIIGAGAAGIGMAITLKDFGITDVIIL-----------------------------E 35
Query: 164 AALLGEAIKDAVAYGWEI-PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
+G + K I P+ S ++ + + + + + +YL
Sbjct: 36 KGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQ 95
Query: 223 ALGKFID-----QHSVEATMKNGE-------KKTLTAENILIATG--GRPNYPDIPGAKE 268
+ + V + +T A+ I +ATG P P G
Sbjct: 96 VVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHY 155
Query: 269 HCISSDDIFSLEKPPGKTLVVGAG 292
I D F G+ +V+G
Sbjct: 156 SEIEDFDNF----NKGQYVVIGGN 175
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 45.6 bits (109), Expect = 1e-05
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 213 LRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI- 271
+D+ ++ ++ ID+ + + +G + ++++ATG R D+P A +
Sbjct: 67 FQDQAIELISDRMVSIDREGRKLLLASGT--AIEYGHLVLATGARNRMLDVPNASLPDVL 124
Query: 272 ---SSDDIFSLE---KPPGKTLVVGAGYIGKLET 299
+ D+ L +V+GAG+IG LE
Sbjct: 125 YLRTLDESEVLRQRMPDKKHVVVIGAGFIG-LEF 157
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 45.3 bits (108), Expect = 1e-05
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI----SSDDIFSLE--- 280
+D + ++ +G TL+A+ I+IATG R +PG++ + + D+ L
Sbjct: 83 LDVQTRTISLDDGT--TLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSW 140
Query: 281 KPPGKTLVVGAGYIGKLET 299
+ L+VG G IG E
Sbjct: 141 TSATRLLIVGGGLIG-CEV 158
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 45.2 bits (108), Expect = 2e-05
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 29/88 (32%)
Query: 234 EATMKNGEKKTLTAEN-----------ILIATGGRPNYPDIPGAKEHCISSDDIFSLE-- 280
E + E + + +++ATG I G ++ + +
Sbjct: 80 EVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRG-----SQTEKLLKYKFL 134
Query: 281 ----------KPPGKTLVVGAGYIGKLE 298
+ V+GAG IG +E
Sbjct: 135 SGALAAVPLLENSQTVAVIGAGPIG-ME 161
Score = 32.1 bits (74), Expect = 0.22
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 22 GLECAGFLNGLGFNATV--MIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKL 79
G+E FL + V + ++ + FD++M + + + + V F +V +
Sbjct: 159 GMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFH---FEETVLGI 215
Query: 80 ADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
+ N + + D +
Sbjct: 216 EET------ANGIVLETSEQ-EISCDSGIFALN 241
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 45.0 bits (107), Expect = 2e-05
Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 71/221 (32%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL 166
L++G G G AA+ G V + D + + +GG V +P
Sbjct: 393 LIVGAGPSGSEAARVLMESGYTVHLTD---TAEK-----IGGHLNQVAALPGL------- 437
Query: 167 LGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGK 226
Y + + K+ + + D + G
Sbjct: 438 --GEWSYHRDY---------------RETQITKLLKKNKESQLALGQKPMTADDVLQYG- 479
Query: 227 FIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPD--------IPG---AKEHCISSDD 275
A+ ++IATG R N IPG + ++ +
Sbjct: 480 --------------------ADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQ 519
Query: 276 IFSLEKPPGKTLVV---GAGYIGKLET--WDSNSGCGNVTI 311
+ +K GK +V+ ++ + +G VTI
Sbjct: 520 VMDGKKKIGKRVVILNADTYFMA-PSLAEKLATAGH-EVTI 558
Score = 28.5 bits (64), Expect = 3.4
Identities = 8/86 (9%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 178 GWEIPNVKSVQHNWANLREAVQNHVKSV--NWVTRVMLRDKKVD--YLNALGKFIDQHSV 233
+ +R + HV+ + ++ +R+ ++ + + + V
Sbjct: 562 VHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGV 621
Query: 234 EATMKNGEKKTLTAENILIATGGRPN 259
N + + +++++ TG
Sbjct: 622 SPRDANTSHRWIEFDSLVLVTGRHSE 647
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 45.1 bits (107), Expect = 2e-05
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
K D++++G G GLAAA A G KVI+L+
Sbjct: 124 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLE 156
Score = 28.2 bits (63), Expect = 4.1
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 233 VEATMKNGEKKTLTAENILIATGG 256
V + + A+ ++IA GG
Sbjct: 292 VLVKGEYTGYYVIKADAVVIAAGG 315
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 44.8 bits (106), Expect = 2e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ D+LV+G G G AA G KV +++
Sbjct: 3 REKVDVLVIGAGPAGTVAASLVNKSGFKVKIVE 35
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 44.1 bits (105), Expect = 3e-05
Identities = 28/175 (16%), Positives = 45/175 (25%), Gaps = 53/175 (30%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
D V+G G GL A+ +++ + D + T
Sbjct: 7 IDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQ-------------------- 46
Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQH-NWANLREAVQNHVKSVNWVTRVMLRDKKVDYLN 222
+ +E N V V + +
Sbjct: 47 ----------------NSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMITKQS 90
Query: 223 ALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE-------HC 270
G F E K+ AE +L+ATG + +P IP +E C
Sbjct: 91 T-GLF------EIVTKDHT--KYLAERVLLATGMQEEFPSIPNVREYYGKSLFSC 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 3e-05
Identities = 52/316 (16%), Positives = 96/316 (30%), Gaps = 101/316 (31%)
Query: 9 HAPKGNLKDKVDSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFL 68
+ D + A L+ L + +G + + + + +L
Sbjct: 178 QTYHVLVGDLIKF---SAETLSELIRTTLDAEKVFT-QGLN--ILEWLENPSNTPDKDYL 231
Query: 69 HKC---LPLS-VTKLADGKLKVQYKNVAEVRQDNTHKYDYDLL--VLGGGSGGLAAAKEA 122
PL V +LA Y A++ T L G G + A A
Sbjct: 232 LSIPISCPLIGVIQLA------HYVVTAKL-LGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 123 AA--------HGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQA----ALLGEA 170
RK I + + + +G C ++A +L
Sbjct: 285 ETDSWESFFVSVRKAITVLF---------F-IGVRC-----------YEAYPNTSLPPSI 323
Query: 171 IKDAVAYGWEIP----NVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNALGK 226
++D++ +P ++ ++ +E VQ++V N +L A
Sbjct: 324 LEDSLENNEGVPSPMLSISNLT------QEQVQDYVNKTN------------SHLPA--- 362
Query: 227 FIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPG-----AKEHCISSDDI----F 277
+ VE ++ NG A+N++++ G P + G K S D F
Sbjct: 363 --GKQ-VEISLVNG------AKNLVVS--GPPQ--SLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 278 SLEKPPGKT--LVVGA 291
S K L V +
Sbjct: 410 SERKLKFSNRFLPVAS 425
Score = 40.0 bits (93), Expect = 0.001
Identities = 38/237 (16%), Positives = 66/237 (27%), Gaps = 89/237 (37%)
Query: 20 DSGLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLP---LSV 76
S + L +G + P + + E EG +P LS+
Sbjct: 294 VSVRKAITVLFFIGVRCY---EAYPNTSLPPSILE-DSLENNEG--------VPSPMLSI 341
Query: 77 TKLADGKLKVQYKNVAEVRQDNTHKYD-----------YDLLVLGGGSGGLAA-----AK 120
+ L +++ V + N+H LV+ G L K
Sbjct: 342 SNLTQEQVQ------DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 121 EAAAHG----------RKVIV----LDYVIP--SPQGTTWGLGGTCVNVGCIPKKLMHQA 164
A G RK+ L P S L+ A
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH--------------------LLVPA 435
Query: 165 A--LLGEAIKDAVAYG---WEIPNVKSVQHNWANLREA----VQNHV-----KSVNW 207
+ + + +K+ V++ +IP V + ++LR + V V W
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIP-VYDT-FDGSDLRVLSGSISERIVDCIIRLPVKW 490
Score = 37.0 bits (85), Expect = 0.009
Identities = 43/266 (16%), Positives = 90/266 (33%), Gaps = 71/266 (26%)
Query: 17 DKVDSGLECAGFLNGLGFNATVMIRSVPL-----------RGFDQQMAKLICEEMAEGGV 65
++ D F + GF+ ++ + P+ + + + +I E + +G +
Sbjct: 1647 NRAD-----NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 66 HF--LHKCLPLSVTKLA----DGKLK-----------VQYKNVAEVRQDNTHKYDYDLLV 108
+ K + T G L ++ +++ D
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA---T 1758
Query: 109 LGGGSGG----LAA-AK----EAAAH-----GRKVIVLDYVIPSPQGTTWGLGGTCVNVG 154
G S G LA+ A E+ G + +P + G +N G
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGM---TMQVAVPRDELGRSNYGMIAINPG 1815
Query: 155 CIPKKLMHQAALLGEAIKDAVAY--GW--EIPNVKSVQHNWANLREAVQNHVKSVNWVTR 210
+ Q AL + + + V GW EI N +N N + +++++ VT
Sbjct: 1816 RVAASF-SQEAL--QYVVERVGKRTGWLVEIVN-----YNVENQQYVAAGDLRALDTVTN 1867
Query: 211 VM--LRDKKVDYLNALGKFIDQHSVE 234
V+ ++ +K+D + + S+E
Sbjct: 1868 VLNFIKLQKID----IIELQKSLSLE 1889
Score = 28.9 bits (64), Expect = 2.5
Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 34/103 (33%)
Query: 45 LRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDY 104
LR +++ I + + V + TH
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKW-ETTTQFKA----------------------TH---- 500
Query: 105 DLLVLG-GGSGGLAA--AKEAAAHGRKVIV---LDYVIPSPQG 141
+L G GG+ GL + G +VIV LD G
Sbjct: 501 -ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 44.1 bits (105), Expect = 3e-05
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI----SSDDIFSLE--- 280
D + + +G TL +++ATG P + + +D ++
Sbjct: 85 FDPQAHTVALSDGR--TLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGL 142
Query: 281 KPPGKTLVVGAGYIGKLET 299
+P + L+VG G IG LE
Sbjct: 143 RPQSRLLIVGGGVIG-LEL 160
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 44.1 bits (104), Expect = 3e-05
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLD-YVIPSPQGTTWGLGG 148
LL++G G+ G + A A G V VLD Y +PS +
Sbjct: 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGNDVNK 53
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 44.2 bits (104), Expect = 4e-05
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 100 HKYDY-DLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ D+ ++GGG G+ AA E + V +++
Sbjct: 104 IERVVVDVAIIGGGPAGIGAALELQQYLT-VALIE 137
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 43.7 bits (104), Expect = 5e-05
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISS-------DDIFSLE 280
I++ + + +G L + +++ATGGRP + ++ +D +
Sbjct: 86 INRDRQQVILSDGR--ALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIR 143
Query: 281 ---KPPGKTLVVGAGYIGKLET 299
+ +V+G GYIG LE
Sbjct: 144 RQLIADNRLVVIGGGYIG-LEV 164
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 43.2 bits (102), Expect = 6e-05
Identities = 35/219 (15%), Positives = 58/219 (26%), Gaps = 66/219 (30%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRK---VIVLD-----YVIPSPQGTTWGLGGTCVNVGCIPK 158
LVLGG G L AA V V++ Y P
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRP---ALPH-------------- 47
Query: 159 KLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKV 218
VA G + V +L EA+ K + + V
Sbjct: 48 ----------------VAIGV-----RDVDELKVDLSEALPE--KGIQFQE------GTV 78
Query: 219 DYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFS 278
+ ++A V T +G + +++ G + G ++ S +
Sbjct: 79 EKIDA-----KSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEF 133
Query: 279 -------LEKPPGKTLVVGAGYIGKLETWDSNSGCGNVT 310
LE G + +G+G + V
Sbjct: 134 ATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVP 172
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 43.3 bits (102), Expect = 7e-05
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ YD+L++GGG G +AA + + G K++++D
Sbjct: 4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVD 36
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 42.9 bits (102), Expect = 7e-05
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 241 EKKTLTAEN-------ILIATGGRPNYPDIPGAKEHCIS------SDDIFSLEKPPGKTL 287
+K + E +++ATG R P I G KE+ ++ +D I + G+ +
Sbjct: 89 GRKVVITEKGEVPYDTLVLATGARAREPQIKG-KEYLLTLRTIFDADRIKESIENSGEAI 147
Query: 288 VVGAGYIGKLE 298
++G G+IG LE
Sbjct: 148 IIGGGFIG-LE 157
Score = 34.1 bits (79), Expect = 0.056
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 22 GLECAGFLNGLGFNATVMIRSVPLRGFDQQMAKLICEEMAEGGVHFL 68
GLE AG L G++ ++ R G D++++ +I + + E GV F
Sbjct: 155 GLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFF 201
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 42.9 bits (102), Expect = 9e-05
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
YD++V+GGG GL AA AA G V++LD
Sbjct: 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLD 56
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 42.3 bits (100), Expect = 1e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
YD+LV+GGG GG AA+ AA +G K ++++
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIE 34
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 42.2 bits (100), Expect = 1e-04
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCI----SSDDIFSLE--- 280
+D + + +G + ++ ATGG P GA + + +D L
Sbjct: 91 LDPAAHTVKLGDGS--AIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAEL 148
Query: 281 KPPGKTLVV-GAGYIGKLET 299
K VV G GYIG LE
Sbjct: 149 DAGAKNAVVIGGGYIG-LEA 167
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 42.1 bits (100), Expect = 1e-04
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
D++++G G+ G+ A EA GR+V+V+D
Sbjct: 28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVID 57
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 41.8 bits (99), Expect = 2e-04
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 88 YKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSP--QGTTWG 145
+ + + + K Y+ +V+GGG G A A A + + + TT
Sbjct: 2 HHHHHHMARIRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFE---SGTMGGRTTSA 58
Query: 146 LGG 148
G
Sbjct: 59 AAG 61
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 42.0 bits (99), Expect = 2e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
D++V+G G G +AA A G KVI+++
Sbjct: 124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIE 156
Score = 27.7 bits (62), Expect = 5.1
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 233 VEATMKNGEKKTLTAENILIATGG 256
+ + A+ +++ATGG
Sbjct: 292 ILVKGMYKGYYWVKADAVILATGG 315
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 41.7 bits (99), Expect = 2e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ +++G G+ GL A + A G+ V V D
Sbjct: 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFD 34
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 42.1 bits (100), Expect = 2e-04
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 24/85 (28%)
Query: 229 DQHSVEAT-MKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSL-------- 279
++ +V K E+ + + ++++ G N G SD F+L
Sbjct: 87 ERQTVSVLNRKTNEQFEESYDKLILSPGASAN---SLG-----FESDITFTLRNLEDTDA 138
Query: 280 ------EKPPGKTLVVGAGYIGKLE 298
K LVVGAGY+ LE
Sbjct: 139 IDQFIKANQVDKVLVVGAGYVS-LE 162
Score = 33.6 bits (78), Expect = 0.079
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 22 GLECAGFLNGLGFNATVMIRS-VPLRGFDQQMAKLICEEMAEGGVHFLHKCLPLSVTKLA 80
LE L G + T++ RS + D M + I +E+ + + + L + +
Sbjct: 160 SLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR---LNEEINAI- 215
Query: 81 DGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
+G E+ + YD+++ G G
Sbjct: 216 NGN---------EITFKSGKVEHYDMIIEGVG 238
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 41.7 bits (97), Expect = 2e-04
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 96 QDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
Q + +DY L++G G G A+ A+ G++V+++D
Sbjct: 24 QQESKGFDY--LIVGAGFAGSVLAERLASSGQRVLIVD 59
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 41.9 bits (98), Expect = 2e-04
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 99 THKYDYDLLVLGGGSGGLAAAKEAAAHGR------KVIVLDYVIPSPQG-TTWGLGGTCV 151
++ DLL++GGG G AA EA K++++D G GL
Sbjct: 18 IVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSAINT 77
Query: 152 NVG 154
+G
Sbjct: 78 YLG 80
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 41.3 bits (97), Expect = 3e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
YD +V+GGG GL AA++ G+KV++L
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLL 30
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 40.7 bits (96), Expect = 4e-04
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 16/73 (21%)
Query: 241 EKKTLTAEN--------ILIATGGRPNYPDIPGAKEHCIS------SDDIFSLEKPPGKT 286
K +T ++ ++IA+G N +P A + S + I K GK
Sbjct: 91 NNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHA-DEIFSLYSYDDALKIKDECKNKGKA 149
Query: 287 LVVGAGYIGKLET 299
++G G +G +E
Sbjct: 150 FIIGGGILG-IEL 161
Score = 29.9 bits (68), Expect = 1.1
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 22 GLECAGFLNGLGFNATVMIRSVPL--RGFDQQMAKLICEEMAEGGVHFL 68
G+E A + G A++ I R D+ + +++ G+
Sbjct: 158 GIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIY 206
Score = 27.2 bits (61), Expect = 8.9
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVL 132
++GGG G+ A+ G +
Sbjct: 150 FIIGGGILGIELAQAIIDSGTPASIG 175
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 40.9 bits (96), Expect = 4e-04
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 84 LKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAA----AHGRKVIVLDYVIP 137
+ + + + T + D+L++GGG G AA EAA G KV +++
Sbjct: 3 YYPKKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 40.6 bits (95), Expect = 4e-04
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVL---DYV------IPSPQGTTWGLGGTCVN 152
D++V+GGG G+AAAK G V+VL D V + + + LGG+ V
Sbjct: 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVG 62
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 40.7 bits (95), Expect = 5e-04
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 98 NTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+T +DL+V+GGG GG A A G +V++L+
Sbjct: 2 STRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLE 37
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 40.6 bits (94), Expect = 5e-04
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 95 RQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
++ YD++++G G G A+E G KV + D
Sbjct: 38 KKVPGMDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 40.1 bits (94), Expect = 6e-04
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 228 IDQHSVEATMKNGEKKTLTAENILIATGGRP---NYPDIPGAKEHCI-----SSDDIFSL 279
+D + +G +T E LIATGG P + D GA+ D SL
Sbjct: 116 LDVRDNMVKLNDGS--QITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSL 173
Query: 280 E---KPPGKTLVVGAGYIGKLET 299
E + ++G G++G E
Sbjct: 174 EKISREVKSITIIGGGFLG-SEL 195
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 40.4 bits (95), Expect = 6e-04
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 95 RQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG 154
Q +++D +V+G G GL AA + G + + P+ T GG +G
Sbjct: 10 TQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALG 69
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 40.1 bits (93), Expect = 7e-04
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
YD +++G G G A E +KV+V++
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIE 31
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 40.3 bits (95), Expect = 7e-04
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVG 154
++D +V+G G G+ AA + + G+ +L V P+ T GG V +G
Sbjct: 5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALG 58
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 40.0 bits (93), Expect = 7e-04
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+L++G G G ++ A G +V ++D
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIID 33
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 40.0 bits (93), Expect = 7e-04
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ ++GGG G A G V + +
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYE 53
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 39.7 bits (93), Expect = 9e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
D+ ++G G GLAAA G V V+
Sbjct: 6 RDVAIVGAGPSGLAAATALRKAGLSVAVI 34
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 39.2 bits (92), Expect = 0.001
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 96 QDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ H+ D ++V+G G GL A E G V+VL+
Sbjct: 5 HHHHHRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLE 42
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 39.3 bits (91), Expect = 0.001
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+V+G G G +A G + ++L+
Sbjct: 5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLE 35
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 39.2 bits (92), Expect = 0.001
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIP 137
D LV+GGG GL AA G IVL +
Sbjct: 3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV 39
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 38.4 bits (90), Expect = 0.002
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 96 QDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ H+ D ++V+G G G+ A E G +V+VL+
Sbjct: 4 HHHHHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLE 41
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 38.0 bits (89), Expect = 0.003
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
D+L+ G G GG A G +V+V++
Sbjct: 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVE 36
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 38.2 bits (88), Expect = 0.003
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
LV+G G GG AA G ++
Sbjct: 7 ADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIV 40
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 37.6 bits (88), Expect = 0.003
Identities = 30/196 (15%), Positives = 67/196 (34%), Gaps = 54/196 (27%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
YD+ ++GGG GL A V +++ + PQ LGG + P+K
Sbjct: 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESL---PQ-----LGGQLSAL--YPEKY--- 54
Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA 223
I D + + L ++ + + + L ++ V+ +
Sbjct: 55 -------IYD-------VAGFPKI--RAQELINNLKEQMAKFD--QTICL-EQAVESVEK 95
Query: 224 LGKFIDQHSVEATMKNGEKKTLTAENILIATGG---RPNYPDIPGAKE-------HCISS 273
D T ++T ++ ++I G +P ++ A++ + +
Sbjct: 96 QA---DGVFKLVT----NEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDD 148
Query: 274 DDIFSLEKPPGKTLVV 289
F+ G+ + +
Sbjct: 149 LQKFA-----GRRVAI 159
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 37.9 bits (89), Expect = 0.003
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 28/116 (24%)
Query: 210 RVML-------RDKKVDYLNALGKFIDQHSVE------ATMKNGEKKTLTAEN------- 249
+ ML +D + G +Q + T + + +
Sbjct: 45 KPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEVRYRD 104
Query: 250 ILIATGGRPNYPDIPGA-KEHCIS------SDDIFSLEKPPGKTLVVGAGYIGKLE 298
+++A G P + G ++ + L++GAG IG E
Sbjct: 105 LVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIG-CE 159
Score = 29.1 bits (66), Expect = 1.7
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
L+LG G G A + ++ G ++ V+
Sbjct: 149 LLLGAGLIGCEFANDLSSGGYQLDVVA 175
Score = 27.5 bits (62), Expect = 6.9
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 21/98 (21%)
Query: 22 GLECAGFLNGLGFNATV-------MIRSVPLRGFDQQMAKLICEEMAEGGVHFLHKCLPL 74
G E A L+ G+ V M + AK + + GV F L
Sbjct: 157 GCEFANDLSSGGYQLDVVAPCEQVMPGLL-----HPAAAKAVQAGLEGLGVRFH---LGP 208
Query: 75 SVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGG 112
+ L E + DL+V G
Sbjct: 209 VLASLKKA------GEGLEAHLSDGEVIPCDLVVSAVG 240
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 37.8 bits (88), Expect = 0.003
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 104 YDLLVLGGGSGGLAAAKE-AAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCI 156
+D +V+G G GLAAA G V+V+D G G G + ++
Sbjct: 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVD------AGHAPGSGDSGRSMAAF 71
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 37.5 bits (88), Expect = 0.003
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
D D +V+G G GLA A+ AA G +V+V +
Sbjct: 2 STDIDCIVIGAGVVGLAIARALAAGGHEVLVAE 34
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 37.4 bits (86), Expect = 0.004
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 96 QDNTHKYDYDLLVLGGGSGGLAAAKEAAAH-GRKVIVLDYVIPSPQGTTWGLG 147
D + D++V+G GS GL+AA E + + +V +++ SP G W G
Sbjct: 32 TDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS-VSPGGGAWLGG 83
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 37.7 bits (88), Expect = 0.004
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+V+G G GGL A A +G ++IVL+
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGHEIIVLE 30
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 37.6 bits (88), Expect = 0.004
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 97 DNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
+ ++ D+L++G G+ GL+ A A + VIVL
Sbjct: 2 NTLPEHSCDVLIIGSGAAGLSLALRLADQHQ-VIVL 36
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 37.2 bits (86), Expect = 0.005
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
+ ++VLGGG GL +A E G KV VL
Sbjct: 12 HSVVVLGGGPAGLCSAFELQKAGYKVTVL 40
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 37.0 bits (86), Expect = 0.005
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 22/79 (27%)
Query: 236 TMKNGEKKTLTAENILIATG--GRPNYPDIPGAKE------HCISSDDIFSLEKPPGKTL 287
++G A ++ ATG G P+ G + H S+ +
Sbjct: 112 VARDGR--QWLARAVISATGTWGEAYTPEYQGLESFAGIQLH--SAHYSTPAPFAGMRVA 167
Query: 288 VVGAGYIGKLETWDSNSGC 306
++G G NSG
Sbjct: 168 IIGGG----------NSGA 176
Score = 34.7 bits (80), Expect = 0.035
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
D++V+GGG GL+A G ++LD
Sbjct: 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILD 33
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 36.8 bits (84), Expect = 0.007
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+YD++VLG G + + +G+KV+ +D
Sbjct: 6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMD 36
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 36.8 bits (86), Expect = 0.008
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
DL+V+GGG G A +AA G V++L+
Sbjct: 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLE 33
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 36.5 bits (85), Expect = 0.011
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGR--KVIVLDYVIPSPQGTTWGLGGTCVNVG 154
+ DL ++G G GL AA AA K+ ++ V P T GG+
Sbjct: 3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQ 58
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 36.5 bits (83), Expect = 0.011
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYV-IPSPQGTTWGLGGTCVNVGC 155
++++G G GLAAA++ + G V +L+ + T+ G ++G
Sbjct: 279 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGA 331
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 36.3 bits (83), Expect = 0.012
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 96 QDNTHKYDYDLLVLGGGSGGLAAAKEAAA-HGRKVIVLD 133
Q T ++D V+G G GL A+ A ++V+VL+
Sbjct: 2 QPMTARFDL--FVVGSGFFGLTIAERVATQLDKRVLVLE 38
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 36.0 bits (84), Expect = 0.012
Identities = 35/196 (17%), Positives = 60/196 (30%), Gaps = 54/196 (27%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
D+L++G G GL A G +D + P+ GG + P+K
Sbjct: 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPL---PE-----PGGQLTAL--YPEK---- 51
Query: 164 AALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDYLNA 223
I D + V +L + + V N L ++
Sbjct: 52 ------YIYD-------VAGFPKVYA--KDLVKGLVEQVAPFN--PVYSLGERAETLERE 94
Query: 224 LGKFIDQHSVEATMKNGEKKTLTAENILIATGG---RPNYPDIPGAKE-------HCISS 273
F + + TA+ ++IA G P PG +E + + S
Sbjct: 95 GDLFK--------VTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKS 146
Query: 274 DDIFSLEKPPGKTLVV 289
F GK +++
Sbjct: 147 KAEFQ-----GKRVLI 157
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 35.9 bits (82), Expect = 0.015
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ LV+G G GL AA E A G +V++++
Sbjct: 92 NTKCLVVGAGPCGLRAAVELALLGARVVLVE 122
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 35.9 bits (82), Expect = 0.016
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 97 DNTHKYDYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLD---------YVIPSPQGTTWGL 146
+ ++++G G GL AA +G + +VL+ + QG + +
Sbjct: 2 NTVSPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDI 61
Query: 147 GGTCVN 152
G + +
Sbjct: 62 GASWHH 67
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 35.8 bits (83), Expect = 0.017
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 102 YDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
++ D+LV+G G GGL+ A A G +V+V++
Sbjct: 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVE 35
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 35.7 bits (83), Expect = 0.018
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
DLLV+GGG G A +A G + +++
Sbjct: 18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVE 48
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 35.7 bits (81), Expect = 0.018
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
YD+++LG G + + +G+K++VLD
Sbjct: 20 HYDVIILGTGLKECILSGLLSHYGKKILVLD 50
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 35.6 bits (82), Expect = 0.019
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
++++G G GL+AA A G +V VL
Sbjct: 33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVL 62
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 34.8 bits (81), Expect = 0.021
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV G G G AA A +G VI+L
Sbjct: 16 LVTGASDGIGREAAMTYARYGATVILLG 43
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 35.4 bits (80), Expect = 0.022
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAA--AHGRKVIVLD-YVIPSPQGTTWGLGGT 149
+ +D++V+G G G A A A GR +++++ +P+ +G T G
Sbjct: 34 EEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGV 85
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 35.1 bits (80), Expect = 0.025
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 91 VAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+A ++ H + V+G G GLAAA + HG V V +
Sbjct: 1 MAPSAGEDKHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFE 43
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 35.2 bits (80), Expect = 0.025
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
++++G G GLAAA++ + G V +L+
Sbjct: 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 137
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 35.0 bits (80), Expect = 0.026
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 95 RQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
++ V+GGG GLA A + G ++L+
Sbjct: 8 HHHMPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLE 46
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 35.0 bits (81), Expect = 0.026
Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 43/185 (23%)
Query: 85 KVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTW 144
KV + + YD+L++G G G AAA +A G + ++
Sbjct: 194 KVDTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF-------- 245
Query: 145 GLGGTCVNVGCIPKKLMHQAALLGEAIKDAVAYGWEIPNVKSVQH-NWANLREAVQNHVK 203
GG V +I N SV L A++ HV
Sbjct: 246 --GG-------------------------QVLDTVDIENYISVPKTEGQKLAGALKAHVS 278
Query: 204 SVNWVTRVMLRDKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDI 263
+ K+ G + +G L A +I+IATG + ++
Sbjct: 279 DYDVDVIDSQSASKLVPAATEGGLH-----QIETASGA--VLKARSIIIATGAKWRNMNV 331
Query: 264 PGAKE 268
PG +
Sbjct: 332 PGEDQ 336
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 34.9 bits (80), Expect = 0.027
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
+D++V+GGG GL A ++ G K ++L
Sbjct: 40 WDVIVIGGGYCGLTATRDLTVAGFKTLLL 68
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 35.0 bits (81), Expect = 0.027
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ DLL++GGG G A +AAA G K +++
Sbjct: 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIE 62
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 35.1 bits (81), Expect = 0.029
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
D++V+GGG GL A E A G +VL+
Sbjct: 49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLE 79
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 34.7 bits (80), Expect = 0.033
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 96 QDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ D+L+LGGG G+A A + A +V++
Sbjct: 19 SHMNAPIETDVLILGGGPVGMALALDLAHRQVGHLVVE 56
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 34.2 bits (79), Expect = 0.038
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ G +G G A K A G +++ +D
Sbjct: 5 VISGCATGIGAATRKVLEAAGHQIVGID 32
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 34.1 bits (79), Expect = 0.038
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
+V G SG G A + A G V+ LD P+ + LG
Sbjct: 11 IVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNA 60
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 34.1 bits (79), Expect = 0.039
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV GG SG G AAA A G +V+VLD
Sbjct: 6 LVTGGASGLGRAAALALKARGYRVVVLD 33
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 34.5 bits (80), Expect = 0.042
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 106 LLVLGGGSGGLAAAKEAAAHGRKVIVL 132
+ ++G G GL+A G+KV ++
Sbjct: 2 IYIIGSGIAGLSAGVALRRAGKKVTLI 28
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 34.1 bits (79), Expect = 0.042
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V GG SG GLA K G +V+VLD
Sbjct: 13 VVTGGASGLGLATTKRLLDAGAQVVVLD 40
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 34.2 bits (79), Expect = 0.042
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
++ GG SG GLA A+ G ++LD + LG CV
Sbjct: 16 VITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPA 65
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 34.0 bits (77), Expect = 0.044
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 96 QDNTHKYDYDLLVLGGGSGGLAAAKEAA--AHGRKVIVLDYVIPSPQGTTWGLGGTCVNV 153
+D D++++G GS GL+AA A KV +++ G GG+ +
Sbjct: 58 KDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIE------SSVAPG-GGSWLGG 110
Query: 154 GCIPKKLMHQAAL 166
+M + A
Sbjct: 111 QLFSAMVMRKPAH 123
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 34.5 bits (78), Expect = 0.048
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 104 YDLLVLGGGSGGLAAAKEAA-AHGRKVIVLD 133
D+LV+G G GL AAK G +++D
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVD 41
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 33.6 bits (78), Expect = 0.048
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV G G G AAA+ AAHG V++L
Sbjct: 18 LVTGAARGIGAAAARAYAAHGASVVLLG 45
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 34.3 bits (79), Expect = 0.050
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+V+G G GGL +A + G +V V +
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFE 30
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 33.7 bits (78), Expect = 0.052
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
++ G G GL ++ A G +V++ D G +G V+
Sbjct: 15 IITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVV 64
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 34.0 bits (79), Expect = 0.052
Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 47/169 (27%)
Query: 101 KYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKL 160
+ D+D++++G G+ G +AA AA G V +LD + GG
Sbjct: 14 ERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVA---------GG------------ 52
Query: 161 MHQAALLGEAIKDAVAYGWEIPNVKSVQH-NWANLREAVQNHVKSVNWVTRVMLRDKKVD 219
A + N + + L + +H + + +V
Sbjct: 53 -------------LTAEAPLVENYLGFKSIVGSELAKLFADHAANYA----KIREGVEVR 95
Query: 220 YLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE 268
+ +E T A+ ++I TG + + G E
Sbjct: 96 SIKKTQ---GGFDIET-----NDDTYHAKYVIITTGTTHKHLGVKGESE 136
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 33.8 bits (78), Expect = 0.057
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V GG G G A + A G V++ D
Sbjct: 34 IVSGGAGGLGEATVRRLHADGLGVVIAD 61
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, ,
structural genomics, protein structure initiative; 2.60A
{Helicobacter pylori}
Length = 475
Score = 34.0 bits (79), Expect = 0.058
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 95 RQDNTHKYDY-DLLVLGGGSGG---LAAAKEAAAH 125
+ N HK DY VL G G L+A +A
Sbjct: 227 DKKNAHKGDYGHAHVLLGKHSGAGLLSA--LSALS 259
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 33.5 bits (76), Expect = 0.070
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 108 VLGGGSGGLAAAKEAAAHGRKVIVLD 133
VLG G+GG A A A G+ V+ D
Sbjct: 9 VLGLGNGGHAFAAYLALKGQSVLAWD 34
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 33.3 bits (77), Expect = 0.074
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
L+ G GSG G AK A G KV+++D + +G + V
Sbjct: 13 LITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAA 62
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 33.4 bits (77), Expect = 0.074
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+ G SG G A + A G VI +D
Sbjct: 5 AITGSASGIGAALKELLARAGHTVIGID 32
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 33.3 bits (77), Expect = 0.078
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
+V GGGSG G A A+ A +G V+V D + +G V
Sbjct: 31 IVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRV 80
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 33.6 bits (77), Expect = 0.080
Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 83/210 (39%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRK---VIVLD-----YVIPSPQGTTWGLGGTCVNVGCIPK 158
++LG G+GG+ AA E V ++ +P W
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVP---SNPW-------------- 50
Query: 159 KLMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW----VTRVMLR 214
V GW K +R V+ K +++ ++
Sbjct: 51 ----------------VGVGW-----KERDDIAFPIRHYVER--KGIHFIAQSAEQIDAE 87
Query: 215 DKKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSD 274
+ + T+ +G T+ + ++IATG + + ++PG+ H
Sbjct: 88 AQNI-----------------TLADGN--TVHYDYLMIATGPKLAFENVPGSDPHEGPVQ 128
Query: 275 DIFSLEKPP------------GKTLVVGAG 292
I +++ +V+GA
Sbjct: 129 SICTVDHAERAFAEYQALLREPGPIVIGAM 158
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 33.6 bits (78), Expect = 0.080
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+V+G G+ G AA+ A G V VLD
Sbjct: 172 VVIGAGTAGYNAARIANGMGATVTVLD 198
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 33.3 bits (77), Expect = 0.082
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDY 134
L+ GGGSG G A A AA G K+ ++D
Sbjct: 17 LITGGGSGLGRATAVRLAAEGAKLSLVDV 45
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 33.4 bits (76), Expect = 0.083
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 10/74 (13%)
Query: 232 SVEATMKNGEKKTLTAENILIATG--GRPNYPDIPGAKE-------HCISSDDIFSLEKP 282
+ + T + + I G P P+I G E + S E
Sbjct: 151 TYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELF 210
Query: 283 PGKT-LVVGAGYIG 295
G++ LVVG
Sbjct: 211 VGESVLVVGGASSA 224
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 33.3 bits (77), Expect = 0.084
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ GG G G AK +G KV++ D
Sbjct: 20 IITGGAGGIGETTAKLFVRYGAKVVIAD 47
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 33.3 bits (77), Expect = 0.094
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+++G G GL+ A G V+D
Sbjct: 9 VIIGLGLTGLSCVDFFLARGVTPRVMD 35
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 32.9 bits (76), Expect = 0.11
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
LVLG G AAA+ A G V V D
Sbjct: 13 LVLGLARSGEAAARLLAKLGAIVTVND 39
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 33.0 bits (76), Expect = 0.11
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
L+ GG SG G A A G +V VLD
Sbjct: 9 LITGGASGLGRALVDRFVAEGARVAVLD 36
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 32.9 bits (76), Expect = 0.11
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVL--DYVIPSPQGTTW 144
+++V+GGG G+ A E A G +V V+ ++ G+T+
Sbjct: 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIG---SGSTF 45
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 32.9 bits (74), Expect = 0.12
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
++++G G GL AA G K L
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHL 38
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 32.7 bits (75), Expect = 0.13
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDY 134
LVLGG G K + I +D+
Sbjct: 26 LVLGGSGALGAEVVKFFKSKSWNTISIDF 54
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 32.8 bits (74), Expect = 0.13
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 93 EVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLG 147
D + D++++G GS GL+AA + ++ +++ +P G W G
Sbjct: 69 RYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG-VAPGGGAWLGG 124
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 32.5 bits (75), Expect = 0.15
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV GG G G + + A G KV+ D
Sbjct: 11 LVSGGARGMGASHVRAMVAEGAKVVFGD 38
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 32.5 bits (74), Expect = 0.15
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
VLG G G+ A+ AA G V V
Sbjct: 161 AVLGLGRTGMTIARTFAALGANVKVGA 187
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 32.7 bits (75), Expect = 0.16
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNV 153
DL ++GGG G+ AA + + +++ + PQ LGG +
Sbjct: 15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIESM---PQ-----LGGQLAAL 56
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 32.3 bits (73), Expect = 0.16
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGG 148
++VLG G GL++A A G V +L +P ++
Sbjct: 8 RVVVLGSGVIGLSSALILARKGYSVHILARDLP-EDVSSQTFAS 50
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 32.1 bits (74), Expect = 0.16
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V G SG G AAA A G KV+V
Sbjct: 12 IVTGASSGIGRAAALLFAREGAKVVVTA 39
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 32.2 bits (74), Expect = 0.16
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
L+ G GSG G A A AA G V L
Sbjct: 32 LITGAGSGIGRATALALAADGVTVGALG 59
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 31.7 bits (73), Expect = 0.16
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 240 GEKKTLTAENILIATGGRPNYPDIPGAKEH---CISSDDIFSLEKPPGKTLVVGAGYIGK 296
E+ AE +L+ T P P + G + + + + GK
Sbjct: 92 TEEGVEKAERLLLCTHKDPTLPSLLGLTRRGAYIDTDEGGRT----SYPRVYAAGVARGK 147
Query: 297 LE 298
+
Sbjct: 148 VP 149
Score = 31.4 bits (72), Expect = 0.20
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+D++V+GGG GL+AA A G KV+VLD
Sbjct: 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLD 31
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 32.1 bits (74), Expect = 0.16
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ G SG GLAAAK A G +V +
Sbjct: 33 VITGATSGIGLAAAKRFVAEGARVFITG 60
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 32.1 bits (74), Expect = 0.17
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V G G G A A+ G KVI L
Sbjct: 12 IVTGASMGIGRAIAERFVDEGSKVIDLS 39
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 32.1 bits (74), Expect = 0.18
Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 47/168 (27%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
YD+L++G G G AAA +A G + ++ GG
Sbjct: 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE----------RFGG--------------- 36
Query: 164 AALLGEAIKDAVAYGWEI---PNVKSVQHNWANLREAVQNHVKSVNWVTRVMLRDKKVDY 220
+ +I +V + L A++ HV + K+
Sbjct: 37 ----------QILDTVDIENYISVPKTEGQK--LAGALKVHVDEYDVDVIDSQSASKLIP 84
Query: 221 LNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKE 268
G + +G L A +I++ATG + ++PG +
Sbjct: 85 AAVEGGLH-----QIETASGA--VLKARSIIVATGAKWRNMNVPGEDQ 125
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 32.1 bits (74), Expect = 0.18
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V GG SG GLA +G KV+ +
Sbjct: 18 IVTGGSSGIGLAVVDALVRYGAKVVSVS 45
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 32.1 bits (74), Expect = 0.18
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V G SG GLA A A G +V LD
Sbjct: 6 IVTGASSGNGLAIATRFLARGDRVAALD 33
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 32.1 bits (74), Expect = 0.19
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
+V G G+G GLA A+ A G V+ D + +G
Sbjct: 33 IVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRV 82
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 32.0 bits (74), Expect = 0.20
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
++LGGG G AAK A G +V + D
Sbjct: 171 VILGGGVVGTEAAKMAVGLGAQVQIFD 197
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 32.0 bits (74), Expect = 0.21
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
++LGGG+ G AAK A G +V +LD
Sbjct: 170 VILGGGTVGTNAAKIALGMGAQVTILD 196
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 32.2 bits (72), Expect = 0.21
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 2/131 (1%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQAAL 166
++G G+ GL H V V P L N + +++
Sbjct: 26 GIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNE 85
Query: 167 LGEAIKDAVAYGWEIPNVKSVQHN--WANLREAVQNHVKSVNWVTRVMLRDKKVDYLNAL 224
+ + + + ++ AV + + + R K Y
Sbjct: 86 WPSEEFGYFGHYYYVGGPQPMRFYGDLKAPSRAVDYRLYQPMLMRALEARGGKFCYDAVS 145
Query: 225 GKFIDQHSVEA 235
+ ++ S +
Sbjct: 146 AEDLEGLSEQY 156
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 31.9 bits (73), Expect = 0.21
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V GG SG GLA A E A G ++++ D
Sbjct: 35 VVTGGASGIGLATATEFARRGARLVLSD 62
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 31.7 bits (73), Expect = 0.21
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV GG SG GL K G KV D
Sbjct: 10 LVTGGASGVGLEVVKLLLGEGAKVAFSD 37
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 31.9 bits (71), Expect = 0.21
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 105 DLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ ++G G GL+AA+ A G +V + D
Sbjct: 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFD 32
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.50A {Thermotoga maritima}
SCOP: c.129.1.1
Length = 195
Score = 31.5 bits (72), Expect = 0.24
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 105 DLLVLGGGSGGL--AAAKEAAAHGRKVIVLDYVIPSPQG 141
LV GG G+ ++ G V+ ++P +
Sbjct: 58 GYLVFNGGRDGVMELVSQGVREAGGTVVG---ILPDEEA 93
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 31.8 bits (73), Expect = 0.24
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV G G GLA A A G + +LD
Sbjct: 11 LVTGAGGNIGLATALRLAEEGTAIALLD 38
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 32.1 bits (72), Expect = 0.24
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
DYD++VLG G + + G+KV+ +D
Sbjct: 11 DYDVIVLGTGITECILSGLLSVDGKKVLHID 41
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 31.8 bits (73), Expect = 0.25
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDY 134
LV G G G A A+ G KV ++D+
Sbjct: 11 LVTGAAQGIGRAFAEALLLKGAKVALVDW 39
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 32.1 bits (72), Expect = 0.25
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 7/80 (8%)
Query: 107 LVLGGGSGGLAAAKEAAAH--GRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQA 164
LV+G G GL A + + +++ + + G G +
Sbjct: 4 LVIGAGPAGLVFASQLKQARPLWAIDIVEK---NDEQEVLGWGVVLPGRPGQH--PANPL 58
Query: 165 ALLGEAIKDAVAYGWEIPNV 184
+ L + + + V
Sbjct: 59 SYLDAPERLNPQFLEDFKLV 78
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 31.8 bits (73), Expect = 0.25
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV GGGSG G A A G V+++
Sbjct: 15 LVTGGGSGIGKGVAAGLVAAGASVMIVG 42
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 31.4 bits (72), Expect = 0.27
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V GGG G G + G +V++ D
Sbjct: 13 VVTGGGRGIGAGIVRAFVNSGARVVICD 40
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 32.0 bits (73), Expect = 0.27
Identities = 22/174 (12%), Positives = 47/174 (27%), Gaps = 71/174 (40%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRK--VIVLD-----YVIPSPQGTTWGLGGTCVNVGCIPKK 159
+V+GGG GG+A A + ++ P
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTP---AFPH--------------- 47
Query: 160 LMHQAALLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVKSVNW----VTRVMLRD 215
+A GW + + L + ++ + +
Sbjct: 48 ---------------LAMGW-----RKFEDISVPLAPLLPKF--NIEFINEKAESIDPDA 85
Query: 216 KKVDYLNALGKFIDQHSVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEH 269
V T ++G+ + + ++IATG + + G +E+
Sbjct: 86 NTV-----------------TTQSGK--KIEYDYLVIATGPKLVF-GAEGQEEN 119
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 31.9 bits (72), Expect = 0.28
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 85 KVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
++YK VA+ ++ T +V+G G GL A A G I+++
Sbjct: 93 DMEYKFVAKAPENLT----ERPIVIGFGPCGLFAGLVLAQMGFNPIIVE 137
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 31.4 bits (72), Expect = 0.30
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV G G G A A G +V V D
Sbjct: 32 LVTGAAGGIGGAVVTALRAAGARVAVAD 59
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 31.3 bits (72), Expect = 0.30
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ GG G G AA++A A G +V++ D
Sbjct: 9 IITGGARGLGAEAARQAVAAGARVVLAD 36
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 31.4 bits (72), Expect = 0.31
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
+V G GSG G A A A G V + + + Q T +G + V
Sbjct: 32 IVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPT 81
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 31.5 bits (72), Expect = 0.31
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
L+ G G G G A E A K+++ D
Sbjct: 35 LITGAGHGIGRLTAYEFAKLKSKLVLWD 62
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 31.3 bits (72), Expect = 0.32
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V G GSG G A AK+ A + V+ ++
Sbjct: 11 IVTGAGSGIGRAIAKKFALNDSIVVAVE 38
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 31.4 bits (72), Expect = 0.33
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTW 144
D LV+G G G + +AHGR V++ P +T
Sbjct: 10 ADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPG-YHSTG 49
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 31.3 bits (72), Expect = 0.35
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ GG G GLA A + G KV++
Sbjct: 10 IITGGTLGIGLAIATKFVEEGAKVMITG 37
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 31.6 bits (71), Expect = 0.35
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVI-----PSPQGTTWGLGG 148
+V+G G GL+ A V+ + +P TT G
Sbjct: 4 VVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAG 50
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 31.0 bits (71), Expect = 0.36
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V GG SG GLA + G V
Sbjct: 12 VVTGGSSGIGLATVELLLEAGAAVAFCA 39
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 31.4 bits (71), Expect = 0.36
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHG-RKVIVL 132
++V+G G G++AAK + G +++L
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLIL 34
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 31.3 bits (72), Expect = 0.36
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 LLVLGGGSG-GLAAAKEAAAHGRKVIV 131
+LV G AA + A A G +V+
Sbjct: 129 VLVQAAAGALGTAAVQVARAMGLRVLA 155
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 31.4 bits (72), Expect = 0.37
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 LLVLGGGSG-GLAAAKEAAAHGRKVIV 131
+LVLG G G AA + A G KVI
Sbjct: 163 VLVLGAAGGIGTAAIQIAKGMGAKVIA 189
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 30.9 bits (71), Expect = 0.38
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ G G AAA A G KVI D
Sbjct: 10 ILTAAAQGIGQAAALAFAREGAKVIATD 37
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 31.4 bits (71), Expect = 0.40
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 103 DYDLLVLGGGSGGLAAAKE-AAAHGRKVIVLD 133
D+L++G G GL A + AA + +++
Sbjct: 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVE 63
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 30.9 bits (71), Expect = 0.46
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV GG G G A A+ A G V + D
Sbjct: 10 LVTGGARGIGRAIAQAFAREGALVALCD 37
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 31.0 bits (70), Expect = 0.46
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRK-VIVL---DYV 135
+ D + ++G G GLAA G +L D+V
Sbjct: 2 SISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 30.6 bits (70), Expect = 0.50
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIV 131
+V+GG G GLA + G +V++
Sbjct: 12 IVIGGTHGMGLATVRRLVEGGAEVLL 37
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 30.6 bits (70), Expect = 0.52
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V G G G G A A+ A G V+V D
Sbjct: 13 IVTGSGGGIGQAYAEALAREGAAVVVAD 40
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 30.4 bits (69), Expect = 0.53
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV GG G + A V +D
Sbjct: 11 LVYGGRGALGSRCVQAFRARNWWVASID 38
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 30.7 bits (70), Expect = 0.55
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV GGG+G G A+ +A G V++
Sbjct: 37 LVTGGGTGVGRGIAQALSAEGYSVVITG 64
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 30.6 bits (70), Expect = 0.56
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
LV G SG G AA A G ++ +D L + V
Sbjct: 10 LVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVA 59
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 29.9 bits (68), Expect = 0.57
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
T Y+ +V+G + G+ +E A G+KV+ +D
Sbjct: 2 TENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVD 36
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 31.0 bits (70), Expect = 0.58
Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 19/114 (16%)
Query: 169 EAIKDAVAYGWEIPNVKSVQHNWANLREAVQ--NHV----KSVNWVTRVMLRDKKVDYLN 222
E I+D G+E +VKS AN+RE +Q N V T L + L+
Sbjct: 39 ELIQDLRNQGYEFISVKSQSAMLANVREQLQNLNGVVFNDSEWRRFTEQYLDNPSDGILD 98
Query: 223 ALGKFIDQHSVEATMKNGEKKTLT-------AENILIAT------GGRPNYPDI 263
K + + + + + N + G N D+
Sbjct: 99 KTRKIHIDYICDFIFDDERLENIYLIDKKNLMRNKVQIIQQFEQAGSHANRYDV 152
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 30.7 bits (70), Expect = 0.58
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 101 KYDYDLLVLGGGSGGLAAAKE-AAAHG-RKVIVL--DYVIPSPQGTTW 144
K YD +++GGG GLA A A HG V VL ++ G
Sbjct: 19 KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLA---GGNMA 63
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 30.6 bits (70), Expect = 0.60
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 106 LLVLGGGSG-GLAAAKEAAAHGRKVIV 131
+LV+ GSG +AA + A G +VI
Sbjct: 170 VLVMAAGSGVSVAAIQIAKLFGARVIA 196
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 30.3 bits (69), Expect = 0.78
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ G SG GLA A+ A G +++
Sbjct: 29 VITGSTSGIGLAIARTLAKAGANIVLNG 56
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 29.9 bits (68), Expect = 0.79
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
V+G G G AK+ AA G V
Sbjct: 11 AVIGAGDYIGAEIAKKFAAEGFTVFAGR 38
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 30.2 bits (67), Expect = 0.85
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 108 VLGGGSGGLAAAKEAAA-HGRKVIVLD 133
V GGG+G + AA+ G +V VL
Sbjct: 7 VCGGGNGAHTLSGLAASRDGVEVRVLT 33
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 29.8 bits (68), Expect = 0.86
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ G G G A+ A G +++
Sbjct: 15 VISGVGPALGTTLARRCAEQGADLVLAA 42
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 29.5 bits (67), Expect = 0.88
Identities = 4/26 (15%), Positives = 8/26 (30%), Gaps = 1/26 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIV 131
L++G G A + +
Sbjct: 7 LLIGASGTLGSAVKERLEKKAEVITA 32
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 30.0 bits (68), Expect = 0.93
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+ ++G G GL + G ++L+
Sbjct: 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILE 32
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 29.9 bits (68), Expect = 0.95
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 85 KVQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
K+ + + ++ + +V+G G GGL+AA G V
Sbjct: 5 KIHHHHHHSSGENLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVY 52
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 29.9 bits (68), Expect = 0.97
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 106 LLVLGGGSGGLAAAKEAAAHGRKVIV 131
++V G G L + A A G +VIV
Sbjct: 193 VVVQGTGGVALFGLQIAKATGAEVIV 218
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 30.0 bits (68), Expect = 0.97
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVL 132
V GGG GL AA +G V +
Sbjct: 15 EVAGGGFAGLTAAIALKQNGWDVRLH 40
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 29.9 bits (68), Expect = 0.98
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQ 140
+ + G GL ++E K V+ + +P
Sbjct: 9 IFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT 43
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 29.9 bits (68), Expect = 1.00
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+ G G GLA A AA G V +
Sbjct: 10 FITGASRGIGLAIALRAARDGANVAIAA 37
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 29.5 bits (67), Expect = 1.0
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V G GSG G A G +V ++
Sbjct: 7 IVTGAGSGLGRALTIGLVERGHQVSMMG 34
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 29.8 bits (68), Expect = 1.1
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT 149
+ D+LV+G G GL A GR V V++ +GG
Sbjct: 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIE------TAG--DVGGV 54
Score = 28.3 bits (64), Expect = 3.8
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 236 TMKNGEKKTLTAENILIATGG--RPNYPDIPG 265
+G+ + A +++A+G P P+ PG
Sbjct: 134 DTNHGD--RIRARYLIMASGQLSVPQLPNFPG 163
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 29.8 bits (68), Expect = 1.1
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ G G+G G A A G V+V D
Sbjct: 15 IITGAGAGIGKEIAITFATAGASVVVSD 42
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 29.9 bits (66), Expect = 1.1
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVL 132
L++G G GL A G V +L
Sbjct: 48 LIVGAGIAGLVAGDLLTRAGHDVTIL 73
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 29.7 bits (67), Expect = 1.1
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRK--VIVLDYVIPSPQ-----GTTWGLGG 148
+V+GGG+GG AAK V +++ P+ + +GG
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIE---PNTDYYTCYLSNEVIGG 51
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 29.4 bits (67), Expect = 1.2
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 14/61 (22%)
Query: 116 LAAAKEAAAHGRKVIVLDYVIPSPQG-TTWGLGGTCVNVGCIPKKLMHQAALLGEAIKDA 174
LAA A G++V+++D PQG T GLG + + L GE ++
Sbjct: 27 LAAY--LARLGKRVLLVDL---DPQGNATSGLG--------VRAERGVYHLLQGEPLEGL 73
Query: 175 V 175
V
Sbjct: 74 V 74
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 29.5 bits (67), Expect = 1.2
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV G SG GL A+ A G +++
Sbjct: 8 LVTGSTSGIGLGIAQVLARAGANIVLNG 35
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 29.6 bits (67), Expect = 1.2
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDY 134
+V GG G A + +G V+ +D
Sbjct: 7 IVYGGKGALGSAILEFFKKNGYTVLNIDL 35
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 29.5 bits (67), Expect = 1.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 116 LAAAKEAAAHGRKVIVLDYVIPSPQGTTW 144
L EAA G V+V++ V T
Sbjct: 257 LRRCAEAAGSGGVVLVIEAVAGDEHAGTG 285
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 29.9 bits (68), Expect = 1.3
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT 149
YD++V+G G GL A + G V + + G+GG
Sbjct: 21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFE------AAS--GVGGV 59
Score = 28.3 bits (64), Expect = 3.8
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 236 TMKNGEKKTLTAENILIATGG--RPNYPDIPG 265
G+ ++A +++A G N P G
Sbjct: 139 RTDRGD--EVSARFLVVAAGPLSNANTPAFDG 168
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 29.5 bits (67), Expect = 1.4
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 106 LLVLGGGSG-GLAAAKEAAAHGRKVIV 131
++ G S A G + IV
Sbjct: 168 FVMTAGASQLCKLIIGLAKEEGFRPIV 194
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 29.5 bits (67), Expect = 1.4
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 106 LLVLGGGSG-GLAAAKEAAAHGRKVIV 131
+LV G G GLAA + A A+G K++
Sbjct: 174 VLVHGASGGVGLAACQIARAYGLKILG 200
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 29.0 bits (66), Expect = 1.6
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ G SG GLA A+ A G ++++
Sbjct: 11 VITGSSSGIGLAIAEGFAKEGAHIVLVA 38
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics,
protein structure initiative; 2.06A {Bacillus subtilis}
Length = 206
Score = 28.9 bits (65), Expect = 1.7
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 103 DYDLLVLGGGSGG-------LAAAKEAAAHGRKV 129
+++LLV+ GG L K A +
Sbjct: 63 NFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPI 96
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 29.0 bits (66), Expect = 1.8
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 104 YDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+D++++G G AA +A + K +V+
Sbjct: 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIG 45
Score = 27.9 bits (63), Expect = 4.0
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 236 TMKNGEKKTLTAENILIATGGRPNYPDIPGAKE 268
+K K A+++++ G + +PG +E
Sbjct: 103 VVKTKRKGEFKADSVILGIGVKRRKLGVPGEQE 135
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for
structural genomics of infectious disease chaperone;
2.30A {Bacillus anthracis}
Length = 212
Score = 28.8 bits (65), Expect = 1.8
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 8/35 (22%)
Query: 103 DYDLLVLGGGSGG--------LAAAKEAAAHGRKV 129
DLL+L GG+ L +A G V
Sbjct: 74 SKDLLILPGGTTWSEEIHQPILERIGQALKIGTIV 108
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 29.1 bits (66), Expect = 1.9
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 236 TMKNGEKKTLTAENILIATGG--RPNYPDIPG 265
T +GE A+ ++ A G N+P++PG
Sbjct: 127 TTDHGE--VYRAKYVVNAVGLLSAINFPNLPG 156
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 29.1 bits (66), Expect = 1.9
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ G +G G A A A G KV +
Sbjct: 10 IITGSSNGIGRATAVLFAREGAKVTITG 37
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 29.0 bits (66), Expect = 1.9
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
L+ G G G A A+ G V + D I + +G V
Sbjct: 12 LITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQM 61
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 29.0 bits (66), Expect = 2.0
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ GG +G G A A+ A G + + D
Sbjct: 11 VITGGANGIGRAIAERFAVEGADIAIAD 38
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 28.7 bits (65), Expect = 2.1
Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
V G G G G A A G KV D
Sbjct: 11 WVTGAGKGIGYATALAFVEAGAKVTGFD 38
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 28.8 bits (65), Expect = 2.1
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+ GGGSG G A+ HG ++
Sbjct: 31 FITGGGSGIGFRIAEIFMRHGCHTVIAS 58
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 28.8 bits (65), Expect = 2.1
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 106 LLVLGGGSGGLAAAKEAAAHGRKVIVLDY 134
LL+LG G G L K A G I
Sbjct: 10 LLILGAGRGQLGLYKAAKELGIHTIAGTM 38
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 28.6 bits (65), Expect = 2.1
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV G AA + G V+ D
Sbjct: 5 LVTHARHFAGPAAVEALTQDGYTVVCHD 32
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 28.7 bits (65), Expect = 2.1
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIV 131
LV GG G G A + + ++
Sbjct: 8 LVTGGSKGIGKAVVELLLQNKNHTVI 33
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 28.7 bits (65), Expect = 2.1
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V G SG GL A AA G +++
Sbjct: 8 VVTGSTSGIGLGIATALAAQGADIVLNG 35
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 28.6 bits (65), Expect = 2.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V G +G G A A A G V+V D
Sbjct: 16 IVTGAAAGIGRAIAGTFAKAGASVVVTD 43
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 28.6 bits (65), Expect = 2.3
Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGC 155
LV G G G A A AA G VIV D + +G +
Sbjct: 10 LVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAA 59
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 28.7 bits (65), Expect = 2.3
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
L+ G G G A+ AA G ++++
Sbjct: 24 LITGATKGIGADIARAFAAAGARLVLSG 51
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 28.7 bits (65), Expect = 2.3
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDY 134
+V GG G G +++ AA G + V D
Sbjct: 6 MVTGGAQGIGRGISEKLAADGFDIAVADL 34
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 28.8 bits (64), Expect = 2.3
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAH-----GRKVIVLD 133
D+L++G G GL AA+ + + KV ++D
Sbjct: 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIID 43
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 28.6 bits (65), Expect = 2.4
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV G G G G + A G +V+ +
Sbjct: 11 LVTGAGKGIGRGTVQALHATGARVVAVS 38
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 28.9 bits (65), Expect = 2.4
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 14/48 (29%)
Query: 111 GGSG----------GLAAAKEAAAHGRKVIVLDYVIPSPQG-TTWGLG 147
GG L ++ H +++V+D PQ +T L
Sbjct: 121 GGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDL---DPQASSTMFLD 165
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 29.0 bits (65), Expect = 2.5
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDY 134
+V G G+G G A A G KV+V D
Sbjct: 23 VVTGAGAGLGREYALLFAERGAKVVVNDL 51
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 28.7 bits (65), Expect = 2.8
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 236 TMKNGEKKTLTAENILIATGG--RPNYPDIPG 265
T+ N E +T ++ ATG PDI G
Sbjct: 127 TLDNEE--VVTCRFLISATGPLSASRMPDIKG 156
Score = 27.9 bits (63), Expect = 4.6
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGT 149
D +V+G G G+ A G KV+ ++ G +GGT
Sbjct: 9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIE------AGE--DVGGT 47
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 28.7 bits (65), Expect = 2.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
LV+G G GL + A A+G V+
Sbjct: 173 LVIGAGPIGLVSVLAAKAYGAFVVCTA 199
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 28.3 bits (64), Expect = 2.8
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
V G G G + A A G +I +D
Sbjct: 15 FVTGAARGQGRSHAVRLAQEGADIIAVD 42
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 28.2 bits (64), Expect = 2.9
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV G GLA A+ A G V+V
Sbjct: 18 LVTASTDGIGLAIARRLAQDGAHVVVSS 45
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 28.3 bits (64), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V G SG G A+A E A +G ++++
Sbjct: 11 VVTAGSSGLGFASALELARNGARLLLFS 38
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA
repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis}
PDB: 3gab_A* 3kdk_A*
Length = 197
Score = 27.9 bits (63), Expect = 3.0
Identities = 5/51 (9%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 23 LECAGFLNGLGF------NATVMIRSVP--LRGFD-QQMAKLICEEMAEGG 64
+ L +G + + ++R P + ++ + I +++ +
Sbjct: 76 EQHKQELESVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSK 126
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 28.4 bits (64), Expect = 3.0
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+ GG G GLA AK AA G V ++
Sbjct: 13 FISGGSRGIGLAIAKRVAADGANVALVA 40
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 28.3 bits (64), Expect = 3.1
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V GG GLA A G +VI+ D
Sbjct: 17 IVTGGAQNIGLACVTALAEAGARVIIAD 44
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 28.5 bits (64), Expect = 3.1
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 111 GGSGGLAAAKEAAAHGRKVIV-------LD--YVIPSPQGTTWG 145
G A EAA +G +I+ LD Y +P G +W
Sbjct: 372 TGDAEKAEVAEAARNGTGLILSPADRTYLDMKYTKDTPLGLSWA 415
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 28.3 bits (64), Expect = 3.2
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V GG G G A A+ G V + D
Sbjct: 16 IVTGGSKGIGAAIARALDKAGATVAIAD 43
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 283
Score = 28.4 bits (62), Expect = 3.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 27 GFLNGLGFNATVMIRSVPLRGFDQQMAKLI 56
GFL GF V +P G Q+ LI
Sbjct: 239 GFLFNAGFPCGVTAHRMPQGGHSQRTVYLI 268
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 28.4 bits (64), Expect = 3.2
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
V G SG GLA A+ AA G V
Sbjct: 28 FVTGVSSGIGLAVARTLAARGIAVYGCA 55
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 28.6 bits (64), Expect = 3.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 103 DYDLLVLGGGSGGLAAA 119
+ D++++G G GL+AA
Sbjct: 35 EADVVIVGAGPAGLSAA 51
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 28.4 bits (64), Expect = 3.2
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V GG +G G A KE G V++
Sbjct: 22 IVTGGATGIGKAIVKELLELGSNVVIAS 49
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis,
A/B(TIM)-barrel, site directed mutagenesis; HET: CBS;
1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3
c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Length = 858
Score = 28.5 bits (63), Expect = 3.2
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 10/42 (23%)
Query: 114 GGLAAAKEAAAHGRKVIV-------LDY---VIPSPQGTTWG 145
GG + + A G +V+V +D+ V P +G WG
Sbjct: 618 GGFDSVNDWANKGYEVVVSNPDYVYMDFPYEVNPDERGYYWG 659
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 27.9 bits (63), Expect = 3.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
L+ G G GLA A+ A G KV +
Sbjct: 11 LITGSSQGIGLATARLFARAGAKVGLHG 38
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics,
PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis}
PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A*
3rqq_A* 3rqx_A* 1kyh_A
Length = 279
Score = 28.2 bits (64), Expect = 3.5
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 94 VRQDNTHKYDY-DLLVLGGGSG--G---LAAAKEAAAHG 126
R +HK Y L+L G G LA A
Sbjct: 20 ERDAESHKGTYGTALLLAGSDDMPGAALLAG--LGAMRS 56
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 28.1 bits (63), Expect = 3.6
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 116 LAAAKEAAAHGRKVIVLDYVIPSPQGT 142
L A G +++VLD G
Sbjct: 270 LRGCVRALEPGGRLLVLDRADVEGDGA 296
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 27.9 bits (63), Expect = 3.6
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ GG SG G A A G +V++
Sbjct: 10 IITGGSSGMGKGMATRFAKEGARVVITG 37
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 28.3 bits (64), Expect = 3.6
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 LLVLGGGSG-GLAAAKEAAAHGRKVIV 131
+L+ GG SG G A + A A G +V
Sbjct: 171 VLIHGGTSGIGTTAIQLARAFGAEVYA 197
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 28.1 bits (63), Expect = 3.6
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 116 LAAAKEAAAHGRKVIVLDYVIPSPQGTT 143
L A +++V+D +I +
Sbjct: 290 LRRIATAMKPDSRLLVIDNLIDERPAAS 317
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 28.0 bits (63), Expect = 3.7
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 103 DYDLLVLGGGSGGLAAAKEAAAHGRKVIVL 132
Y +L++G G G A A G +V +L
Sbjct: 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLL 32
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 27.8 bits (63), Expect = 3.8
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV G G G G K A G KV+ +
Sbjct: 11 LVTGAGKGIGRDTVKALHASGAKVVAVT 38
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 28.2 bits (63), Expect = 4.0
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+ G G G A A +AA G +++
Sbjct: 49 FITGASRGIGKAIALKAAKDGANIVIAA 76
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D*
3clt_D* 3clr_D* 3cls_D*
Length = 320
Score = 27.9 bits (63), Expect = 4.0
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 81 DGKLK-VQYKNVAEVRQDNTHKYDYDLLVLGGGSGGLAAAKEAAAHG-RKVIVLD 133
L+ V + + + ++V GS A + +G +++V+
Sbjct: 11 RNDLRPVSLELIGAANG-LKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVVVK 64
>3rss_A Putative uncharacterized protein; unknown function,
ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET:
NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A*
3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A*
3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A*
3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Length = 502
Score = 28.3 bits (64), Expect = 4.1
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 94 VRQDNTHKYDY-DLLVLGGGSG--G---LAAAKEAA 123
R ++HK Y +L++ G G L+ +
Sbjct: 234 ERPRDSHKGTYGKVLIIAGSRLYSGAPVLSG--MGS 267
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 28.1 bits (63), Expect = 4.1
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDY 134
++ G G G G + E A G KV+V D
Sbjct: 12 IITGAGGGLGKYYSLEFAKLGAKVVVNDL 40
Score = 27.4 bits (61), Expect = 7.1
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 56 ICEEMAEGGVHFLHKCLPLSVTKLADGKLKVQYKNVAEVRQDNTHKYDYDLLVLGGGSGG 115
I + +L P + A + + + T ++++ G G
Sbjct: 274 ILDYDDSRKPEYLKNQYPFMLNDYATLTNEARKLPANDASGAPTVSLKDKVVLITGAGAG 333
Query: 116 L--AAAKEAAAHGRKVIVLDY 134
L AK A +G KV+V D+
Sbjct: 334 LGKEYAKWFAKYGAKVVVNDF 354
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 28.0 bits (63), Expect = 4.1
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 116 LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGL 146
L +EA A +V+V++ I + + + +
Sbjct: 255 LGNCREAMAGDGRVVVIERTISASEPSPMSV 285
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 28.0 bits (63), Expect = 4.2
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 116 LAAAKEAAAHGRKVIVLDYVIPSPQGTTWGL 146
L + +V+V+D V+P
Sbjct: 269 LTNCRRVMPAHGRVLVIDAVVPEGNDAHQSK 299
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 27.7 bits (62), Expect = 4.2
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 13/42 (30%)
Query: 111 GGSG------GLAAAKEAAAHGRKVIVLDYVIPSPQG--TTW 144
GGSG +A A + G + V+D PQ T W
Sbjct: 11 GGSGKTTAVINIATA--LSRSGYNIAVVDT---DPQMSLTNW 47
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 27.9 bits (63), Expect = 4.2
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLG 147
+ G G G + A AA G +I D P T+
Sbjct: 19 FITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPA 60
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 27.9 bits (63), Expect = 4.3
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLG 147
+ G G G A A AA G +I +D P +
Sbjct: 15 FITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPA 56
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 28.1 bits (63), Expect = 4.3
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 116 LAAAKEAAAHGRKVIVLDYVIPSPQG 141
A +A G ++++LD VI P+
Sbjct: 278 CKKAFDAMRSGGRLLILDMVIDDPEN 303
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 27.9 bits (63), Expect = 4.3
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 106 LLVLGGGSG-GLAAAKEAAAHGRKVIV 131
LLV GS G A+ + ++I
Sbjct: 148 LLVNACGSAIGHLFAQLSQILNFRLIA 174
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 27.9 bits (63), Expect = 4.3
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV GG G G A +E A G +V
Sbjct: 25 LVTGGSKGIGYAIVEELAGLGARVYTCS 52
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 28.0 bits (62), Expect = 4.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
VLG G G++ A++ AA G KV V
Sbjct: 159 AVLGLGRVGMSVARKFAALGAKVKVGA 185
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 27.9 bits (63), Expect = 4.3
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDY 134
LV G G G G A A G V + DY
Sbjct: 6 LVTGAGQGIGKAIALRLVKDGFAVAIADY 34
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 27.9 bits (63), Expect = 4.4
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 240 GEKKTLTAENILIATGGRPNYPDIPGAKE 268
G A+ +++ATG P IPG
Sbjct: 105 GYNGEYRAKAVILATGADPRKLGIPGEDN 133
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 27.7 bits (62), Expect = 4.6
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 105 DLLVLGGGSG--GLAAAKEAAAHGRKVI 130
D + GG+ G A++ I
Sbjct: 169 DWFIQNGGTSAVGKYASQIGKLLNFNSI 196
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 27.5 bits (62), Expect = 4.7
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
L+ G G G A A+ A G +V ++
Sbjct: 9 LITGASRGIGEATARLLHAKGYRVGLMA 36
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.80A {Thermus thermophilus} SCOP:
c.129.1.1
Length = 171
Score = 27.2 bits (61), Expect = 4.8
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 107 LVLGGGSGGL-AAAKEAAAHGRKVI 130
L GG GG+ A A+ A G V+
Sbjct: 36 LACGGYQGGMEALARGVKAKGGLVV 60
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 27.9 bits (62), Expect = 4.9
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 16/77 (20%)
Query: 108 VLGGGSGGLAAA----KEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQ 163
V G L +AA G +VI + S +G + +
Sbjct: 229 VFGSKKTELLWVSKAIVQAANDGNQVINI-----S-------VGSYIILDKNDHQTFRKD 276
Query: 164 AALLGEAIKDAVAYGWE 180
+ +A++ A+ Y +
Sbjct: 277 EKVEYDALQKAINYAKK 293
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 27.7 bits (62), Expect = 5.0
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVL 132
V+GG GL AA G V V
Sbjct: 9 AVVGGSISGLTAALMLRDAGVDVDVY 34
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 27.9 bits (62), Expect = 5.1
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 116 LAAAKEAAAHGRKVIVLDYVIPSPQGTTWG 145
L +A KV+++ ++P
Sbjct: 281 LKNCYDALPAHGKVVLVQCILPVNPEANPS 310
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 27.5 bits (62), Expect = 5.1
Identities = 4/28 (14%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ G G G + +V+
Sbjct: 32 VITGASQGIGAGLVRAYRDRNYRVVATS 59
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 26.9 bits (60), Expect = 5.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
V+G G G + KE G +V+ +D
Sbjct: 10 AVIGLGRFGGSIVKELHRMGHEVLAVD 36
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase,
glycosphingolipids, paenibacill GH20, hydrolase,
structural genomics, NPPSFA; HET: NAG; 1.60A
{Paenibacillus SP} PDB: 3gh4_A* 3gh7_A*
Length = 525
Score = 27.8 bits (62), Expect = 5.2
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 114 GGLAAAKEAAAHGRKVIV------LD--YVIPSPQGTTWG 145
+ A A G KVIV LD Y SP G W
Sbjct: 395 CSASTGTAAKAKGMKVIVSPANAYLDMKYYSDSPIGLQWR 434
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 27.7 bits (62), Expect = 5.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 105 DLLVLGGGSGGLAAAKEAAAHG-RKVIVLD 133
++++LGGG GLAA G KVI+ +
Sbjct: 216 NVVILGGGPIGLAAVAILKHAGASKVILSE 245
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase;
HET: DNA; 2.40A {Neisseria gonorrhoeae}
Length = 220
Score = 27.6 bits (62), Expect = 5.3
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 23 LECAGFLNGLGF------NATVMIRSVP--LRGFD-QQMAKLICEEMAEGG 64
+ A L G G T+ +R+ P L D +A+ + E+A+ G
Sbjct: 98 ADHAETLAGFGLELSDMGGNTLAVRAAPVMLGKSDVVSLARDVLGELAQVG 148
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 27.7 bits (62), Expect = 5.4
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDY 134
LV G G G G A A A G V+V D
Sbjct: 13 LVTGAGGGLGRAYALAFAERGALVVVNDL 41
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 27.8 bits (62), Expect = 5.6
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNV 153
LV+G G G+ +G +V + + P+ T
Sbjct: 185 LVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY 231
>1aym_2 HRV16, human rhinovirus 16 coat protein; RNA, site-directed
mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A
{Human rhinovirus SP} PDB: 1ayn_2* 1ncr_B* 1nd2_B*
1nd3_B* 1qju_2* 1qjx_2* 1qjy_2* 1c8m_2* 1d3e_2 1r1a_2*
2hwd_2* 2hwe_2* 2hwf_2* 1fpn_2* 1v9u_2* 3dpr_B* 3tn9_2
Length = 261
Score = 27.5 bits (61), Expect = 5.6
Identities = 16/73 (21%), Positives = 27/73 (36%)
Query: 232 SVEATMKNGEKKTLTAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKTLVVGA 291
SVEA + +T + I + N G H ++ D +++KP
Sbjct: 3 SVEACGYSDRIIQITRGDSTITSQDVANAVVGYGVWPHYLTPQDATAIDKPTQPDTSSNR 62
Query: 292 GYIGKLETWDSNS 304
Y + W+S S
Sbjct: 63 FYTLDSKMWNSTS 75
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 27.6 bits (62), Expect = 5.6
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ G +G G +AA A G +V +
Sbjct: 30 IITGSSNGIGRSAAVIFAKEGAQVTITG 57
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 27.5 bits (62), Expect = 5.6
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIV 131
++ G +G G + A A KV+V
Sbjct: 11 VITGSSTGLGKSMAIRFATEKAKVVV 36
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 27.6 bits (62), Expect = 5.9
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLDYVIPSP 139
+ G G G + A A G +I +D
Sbjct: 32 FITGAARGQGRSHAITLAREGADIIAIDVCKQLD 65
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 27.3 bits (61), Expect = 5.9
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+V G G G G A A AA G +V+V D
Sbjct: 31 IVTGAGGGIGRAHALAFAAEGARVVVND 58
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 27.5 bits (61), Expect = 6.3
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 116 LAAAKEAAAHGRKVIVLDYVIPSPQGTT 143
L A KVIV +Y++P +
Sbjct: 283 LKNCYAALPDHGKVIVAEYILPPSPDPS 310
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like
superfamily, structur genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus
faecalis} PDB: 2r3e_A
Length = 310
Score = 27.5 bits (62), Expect = 6.4
Identities = 7/37 (18%), Positives = 20/37 (54%), Gaps = 8/37 (21%)
Query: 95 RQDNTHKYDY-DLLVLGG-----GSGGLAAAKEAAAH 125
R +++K ++ ++++GG G+ ++ EA +
Sbjct: 35 RPSDSYKSNFGRVVLIGGNRQYGGAIIMST--EACIN 69
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 27.1 bits (61), Expect = 6.4
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIV 131
++ G G G A A G +V++
Sbjct: 11 IITGASQGIGAVIAAGLATDGYRVVL 36
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 27.5 bits (61), Expect = 6.8
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 116 LAAAKEAAAHGRKVIVLDYVIPSPQGTT 143
L+ +A + KVI++++++P T+
Sbjct: 289 LSNCHKALSPNGKVIIVEFILPEEPNTS 316
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 27.2 bits (61), Expect = 6.9
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIV 131
L+ G GL A HG +VI+
Sbjct: 31 LITGASQRVGLHCALRLLEHGHRVII 56
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 343
Score = 27.4 bits (60), Expect = 7.1
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 12/98 (12%)
Query: 117 AAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK-----------LMHQAA 165
+ A+ A A G KV L + GT G G + + H A
Sbjct: 101 SMAELAHALGLKVC-LKPTVNCRDGTWRGEIRFEKEHGPDLESWEAWFGSYSDMMAHYAH 159
Query: 166 LLGEAIKDAVAYGWEIPNVKSVQHNWANLREAVQNHVK 203
+ + G E+ + + W V+
Sbjct: 160 VAKRTGCEMFCVGCEMTTAEPHEAMWRETIARVRTEYD 197
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 27.2 bits (61), Expect = 7.1
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 106 LLVLGGGSG-GLAAAKEAAAHGRKVIV 131
+LV G G G A A+ + +
Sbjct: 146 VLVHSAGGGVGQAVAQLCSTVPNVTVF 172
>3loq_A Universal stress protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Length = 294
Score = 27.3 bits (61), Expect = 7.2
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 118 AAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKKLMHQA-ALLGEAIKDAVA 176
++ VL +VI + +T G + ++ +A +L E + A
Sbjct: 42 LGDFKKVGVEEIGVL-FVINLTKLSTVSGGID---IDHYIDEMSEKAEEVLPEVAQKIEA 97
Query: 177 YGWEIPNVKSVQH 189
G + +K
Sbjct: 98 AGIKAEVIKPFPA 110
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 27.2 bits (61), Expect = 7.4
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
++ G +G G A A G V +
Sbjct: 10 IITGSSNGIGRTTAILFAQEGANVTITG 37
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 27.3 bits (60), Expect = 7.4
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 104 YDLLVLGGGSGGLAAAKE--AAAHGRKVIVLD 133
L+++GGG GLAAA A + +L+
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLE 36
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 27.4 bits (61), Expect = 7.5
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 246 TAENILIATGGRPNYPDIPGAKEHCISSDDIFSLEKPPGKT 286
EN L+ G + +C+ F L G
Sbjct: 224 ALENTLM--NGTNTFDCSASTDPNCVGGGKKFELTFVEGTK 262
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 26.6 bits (59), Expect = 7.5
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVLD 133
+V G + + G+ V V+
Sbjct: 7 IVCGHSILAINTILQLNQRGQNVTVIS 33
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 27.1 bits (61), Expect = 7.5
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIV 131
+V G G G A A A G V++
Sbjct: 12 VVAGAGRDIGRACAIRFAQEGANVVL 37
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 27.2 bits (61), Expect = 7.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 LLVLGGGSG-GLAAAKEAAAHGRKVIV 131
+L+ G SG G AA + G +V
Sbjct: 166 VLIHAGLSGVGTAAIQLTRMAGAIPLV 192
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 27.2 bits (60), Expect = 7.6
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 104 YDLLVLGGGSGGLAAA------KEAAAHGRKVIVLD 133
++++GGG GLAAA + ++ +++
Sbjct: 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVE 41
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 27.2 bits (60), Expect = 7.7
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIV 131
+V GG G G K+ +++G V++
Sbjct: 16 VVTGGNKGIGFEICKQLSSNGIMVVL 41
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 27.2 bits (61), Expect = 7.7
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
+ G G G A A AA G +I +D
Sbjct: 17 FITGAARGQGRAHAVRLAADGADIIAVD 44
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 27.1 bits (61), Expect = 7.8
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIV 131
LV G +G G A A A G V++
Sbjct: 14 LVTGSTAGIGKAIATSLVAEGANVLI 39
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 27.2 bits (61), Expect = 7.9
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV GG G G + A + A G +I+ D
Sbjct: 14 LVTGGARGQGRSHAVKLAEEGADIILFD 41
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 27.1 bits (61), Expect = 8.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 236 TMKNGEKKTLTAENILIATGGRPNYPDIPGAKE 268
+ + KT A++++IATGG P I G E
Sbjct: 92 VILAEDGKTFEAKSVIIATGGSPKRTGIKGESE 124
>2cmg_A Spermidine synthase; transferase, putrescine
aminopropyltransferase, spermidine biosynthesis,
polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori}
PDB: 2cmh_A
Length = 262
Score = 27.0 bits (60), Expect = 8.1
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 99 THKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLD 133
T K ++L++ G A + + + +
Sbjct: 69 TKKELKEVLIVDGFDLE--LAHQLFKYDTHIDFVQ 101
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 26.8 bits (60), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIV 131
LV GG G G A + AA G +V V
Sbjct: 30 LVTGGSRGIGAAVCRLAARQGWRVGV 55
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein
structure initiative, joint center for structural G
transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Length = 298
Score = 27.0 bits (60), Expect = 8.5
Identities = 8/69 (11%), Positives = 17/69 (24%), Gaps = 19/69 (27%)
Query: 100 HKYDYDLLVLGGGSGGLAAAKEAAAHGRKVIVLDYVIPSPQGTTWGLGGTCVNVGCIPKK 159
H + + + +G H + D + GG V
Sbjct: 8 HHHHHMITFIG--------------H----VSKDVNVV-DGKREIAYGGGVVMGAITSSL 48
Query: 160 LMHQAALLG 168
L + ++
Sbjct: 49 LGVKTKVIT 57
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics,
PSI, protein structure initiative; 1.80A {Pyrococcus
furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Length = 281
Score = 26.8 bits (60), Expect = 8.6
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 107 LVLGGGSGGLAAAKEAAAHGRKVIVL 132
LV+GGG GG +E H +++
Sbjct: 80 LVIGGGDGG--TVREVLQHDVDEVIM 103
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 27.2 bits (61), Expect = 8.7
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 105 DLLVLGGGSGGLAAAKEAAAHG-RKVIVLD 133
+L+ G G GL A A G VIV +
Sbjct: 170 SVLITGAGPLGLLGIAVAKASGAYPVIVSE 199
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 26.8 bits (59), Expect = 9.1
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 106 LLVLG-GGSG----GLAAAKEAAAHGRKVIVL 132
L LG G +AAAK A+ G++V++
Sbjct: 5 LTFLGKSGVARTKIAIAAAKLLASQGKRVLLA 36
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 26.8 bits (60), Expect = 9.5
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV G GSG G A + A G V D
Sbjct: 11 LVTGAGSGIGRAVSVRLAGEGATVAACD 38
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 27.0 bits (60), Expect = 9.5
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 14/48 (29%)
Query: 111 GGSG----------GLAAAKEAAAHGRKVIVLDYVIPSPQG-TTWGLG 147
GG + A +++V+D PQ T L
Sbjct: 118 GGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDL---DPQSSATMFLS 162
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 26.8 bits (60), Expect = 9.7
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 107 LVLGGGSG-GLAAAKEAAAHGRKVIVLD 133
LV G SG GL A+ G +V V
Sbjct: 26 LVTGATSGIGLEIARRLGKEGLRVFVCA 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.412
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,938,902
Number of extensions: 307550
Number of successful extensions: 2019
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1870
Number of HSP's successfully gapped: 497
Length of query: 312
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 219
Effective length of database: 4,105,140
Effective search space: 899025660
Effective search space used: 899025660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)