Query psy11186
Match_columns 212
No_of_seqs 135 out of 1891
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 20:18:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.8E-38 4E-43 285.6 20.1 177 3-196 277-454 (454)
2 PRK14727 putative mercuric red 100.0 1.5E-35 3.2E-40 269.8 20.8 189 4-212 289-478 (479)
3 PRK14694 putative mercuric red 100.0 1.7E-35 3.7E-40 268.6 20.7 187 5-212 280-467 (468)
4 TIGR01438 TGR thioredoxin and 100.0 2.3E-35 4.9E-40 268.9 21.5 197 4-211 285-483 (484)
5 TIGR02053 MerA mercuric reduct 100.0 5E-35 1.1E-39 265.0 21.7 190 3-211 271-461 (463)
6 PRK07818 dihydrolipoamide dehy 100.0 5.7E-35 1.2E-39 265.0 22.0 178 4-198 279-458 (466)
7 TIGR01424 gluta_reduc_2 glutat 100.0 3.4E-35 7.4E-40 265.2 20.1 176 4-195 269-445 (446)
8 PRK06467 dihydrolipoamide dehy 100.0 6.2E-35 1.3E-39 265.3 21.7 185 4-208 280-465 (471)
9 PLN02507 glutathione reductase 100.0 6.2E-35 1.3E-39 266.9 21.7 177 4-196 306-483 (499)
10 PRK08010 pyridine nucleotide-d 100.0 7.1E-35 1.5E-39 262.5 21.1 177 4-197 260-438 (441)
11 PRK06116 glutathione reductase 100.0 6.8E-35 1.5E-39 263.3 20.6 177 4-195 271-449 (450)
12 PRK13748 putative mercuric red 100.0 9.3E-35 2E-39 268.8 21.0 189 4-212 371-560 (561)
13 TIGR03452 mycothione_red mycot 100.0 8.7E-35 1.9E-39 263.1 20.3 177 5-198 272-451 (452)
14 PRK06370 mercuric reductase; V 100.0 1.2E-34 2.7E-39 262.5 21.2 178 4-198 277-455 (463)
15 PLN02546 glutathione reductase 100.0 1E-34 2.2E-39 268.1 19.7 176 4-196 356-532 (558)
16 TIGR01421 gluta_reduc_1 glutat 100.0 1.6E-34 3.4E-39 261.3 20.3 177 4-195 271-449 (450)
17 PRK07846 mycothione reductase; 100.0 2E-34 4.4E-39 260.6 20.9 177 5-198 269-448 (451)
18 TIGR01423 trypano_reduc trypan 100.0 2.2E-34 4.8E-39 262.5 21.1 177 4-196 294-471 (486)
19 PRK07845 flavoprotein disulfid 100.0 2.6E-34 5.7E-39 260.8 21.2 178 4-198 280-458 (466)
20 PRK06292 dihydrolipoamide dehy 100.0 2.2E-34 4.8E-39 260.4 20.6 178 4-198 274-452 (460)
21 KOG4716|consensus 100.0 5.5E-35 1.2E-39 248.9 13.7 198 3-211 305-503 (503)
22 PRK06115 dihydrolipoamide dehy 100.0 7.4E-34 1.6E-38 257.9 20.9 176 4-198 282-458 (466)
23 PRK05249 soluble pyridine nucl 100.0 7.7E-34 1.7E-38 256.9 21.0 177 4-198 278-455 (461)
24 PTZ00153 lipoamide dehydrogena 100.0 1.1E-33 2.5E-38 264.8 21.3 180 4-198 433-652 (659)
25 PRK06327 dihydrolipoamide dehy 100.0 2.8E-33 6.1E-38 254.6 21.6 177 4-198 290-467 (475)
26 PRK06912 acoL dihydrolipoamide 100.0 3.4E-33 7.3E-38 253.0 21.2 176 4-198 274-450 (458)
27 PRK06416 dihydrolipoamide dehy 100.0 4.2E-33 9.1E-38 252.3 21.7 180 5-205 279-459 (462)
28 KOG1335|consensus 100.0 1.2E-33 2.6E-38 243.8 14.8 179 3-199 319-498 (506)
29 PTZ00058 glutathione reductase 100.0 8.5E-33 1.8E-37 255.4 20.1 185 5-198 343-559 (561)
30 PTZ00052 thioredoxin reductase 100.0 1.6E-32 3.5E-37 251.1 18.8 189 5-206 285-488 (499)
31 PRK05976 dihydrolipoamide dehy 100.0 4.7E-32 1E-36 246.3 21.8 177 4-198 287-464 (472)
32 PRK07251 pyridine nucleotide-d 100.0 4.6E-32 9.9E-37 244.1 21.0 176 4-196 259-436 (438)
33 TIGR01350 lipoamide_DH dihydro 100.0 1E-31 2.3E-36 242.9 21.6 178 4-198 275-453 (461)
34 PRK13512 coenzyme A disulfide 100.0 3E-31 6.6E-36 239.0 18.0 183 3-198 244-433 (438)
35 KOG0405|consensus 100.0 2.6E-31 5.5E-36 227.1 14.6 179 3-196 292-472 (478)
36 PRK09564 coenzyme A disulfide 100.0 7.5E-31 1.6E-35 236.2 18.3 184 4-198 250-439 (444)
37 TIGR03385 CoA_CoA_reduc CoA-di 100.0 4.6E-30 9.9E-35 230.2 18.6 183 4-197 237-425 (427)
38 PF02852 Pyr_redox_dim: Pyridi 99.9 1.2E-24 2.6E-29 161.1 13.7 110 83-196 1-110 (110)
39 PRK14989 nitrite reductase sub 99.7 2.1E-17 4.6E-22 159.4 13.3 157 5-188 250-413 (847)
40 PRK09754 phenylpropionate diox 99.5 1E-13 2.2E-18 123.5 14.3 136 5-175 246-385 (396)
41 TIGR02374 nitri_red_nirB nitri 99.5 3.4E-13 7.3E-18 129.8 12.9 147 5-184 243-391 (785)
42 PRK04965 NADH:flavorubredoxin 99.5 2.8E-13 6.1E-18 119.8 11.5 123 5-160 244-367 (377)
43 COG1251 NirB NAD(P)H-nitrite r 99.3 8.8E-12 1.9E-16 116.2 8.8 147 5-186 248-399 (793)
44 PTZ00318 NADH dehydrogenase-li 98.9 4.3E-09 9.4E-14 94.8 8.8 61 4-72 283-345 (424)
45 COG1252 Ndh NADH dehydrogenase 98.9 4.2E-09 9.2E-14 93.9 8.5 74 2-82 263-343 (405)
46 COG0446 HcaD Uncharacterized N 98.9 2.7E-08 5.8E-13 87.7 11.7 156 15-184 252-413 (415)
47 TIGR01316 gltA glutamate synth 98.7 1.8E-08 3.9E-13 91.5 5.7 55 4-71 391-446 (449)
48 TIGR03169 Nterm_to_SelD pyridi 98.7 2.9E-08 6.4E-13 87.2 5.4 60 4-71 246-307 (364)
49 KOG1336|consensus 98.5 6.7E-07 1.4E-11 80.4 9.7 143 5-179 318-463 (478)
50 PRK12770 putative glutamate sy 98.5 1.9E-07 4.1E-12 82.1 6.0 52 8-72 295-347 (352)
51 PRK12831 putative oxidoreducta 98.5 2E-07 4.3E-12 85.1 5.9 51 8-71 405-457 (464)
52 TIGR01292 TRX_reduct thioredox 98.5 1.2E-07 2.6E-12 80.4 4.1 54 5-71 243-297 (300)
53 PRK12810 gltD glutamate syntha 98.5 2E-07 4.4E-12 85.1 5.8 55 4-71 405-461 (471)
54 PRK09853 putative selenate red 98.4 2.5E-07 5.5E-12 90.7 5.8 58 4-74 783-841 (1019)
55 TIGR03143 AhpF_homolog putativ 98.4 1.9E-07 4.1E-12 87.0 4.3 54 6-71 251-305 (555)
56 PRK12769 putative oxidoreducta 98.4 3.7E-07 7.9E-12 86.7 6.2 56 4-72 589-649 (654)
57 PRK11749 dihydropyrimidine deh 98.4 3.9E-07 8.4E-12 82.9 5.7 52 7-71 395-448 (457)
58 PRK12814 putative NADPH-depend 98.4 4.6E-07 1E-11 86.0 6.1 55 4-71 441-497 (652)
59 TIGR01318 gltD_gamma_fam gluta 98.4 5.1E-07 1.1E-11 82.5 6.1 55 4-71 403-462 (467)
60 TIGR03315 Se_ygfK putative sel 98.3 6.4E-07 1.4E-11 88.1 6.1 58 4-74 780-839 (1012)
61 PRK12778 putative bifunctional 98.3 8E-07 1.7E-11 85.6 6.1 51 8-71 695-746 (752)
62 PRK12809 putative oxidoreducta 98.3 8.3E-07 1.8E-11 84.1 6.0 56 4-72 572-632 (639)
63 TIGR01317 GOGAT_sm_gam glutama 98.3 9.3E-07 2E-11 81.1 5.6 55 4-71 419-475 (485)
64 TIGR03140 AhpF alkyl hydropero 98.3 2.4E-07 5.2E-12 85.5 1.7 56 4-72 454-510 (515)
65 KOG2495|consensus 98.2 1.4E-06 3.1E-11 77.5 4.4 45 18-71 347-393 (491)
66 PRK15317 alkyl hydroperoxide r 98.2 9.2E-07 2E-11 81.7 3.4 56 4-72 453-509 (517)
67 PRK12779 putative bifunctional 98.1 3.8E-06 8.3E-11 82.7 5.7 52 7-71 570-623 (944)
68 PRK10262 thioredoxin reductase 98.1 1.4E-06 3.1E-11 75.3 2.3 52 7-71 254-311 (321)
69 PRK12771 putative glutamate sy 98.1 4.6E-06 9.9E-11 77.9 5.5 53 5-71 385-440 (564)
70 COG0492 TrxB Thioredoxin reduc 98.0 3.2E-06 6.9E-11 73.2 3.4 54 5-71 243-297 (305)
71 PRK13984 putative oxidoreducta 98.0 5.9E-06 1.3E-10 77.7 5.2 48 9-71 550-598 (604)
72 PRK12775 putative trifunctiona 98.0 1E-05 2.2E-10 80.3 5.8 51 8-71 695-751 (1006)
73 KOG1346|consensus 98.0 1.2E-05 2.6E-10 71.7 5.2 163 4-180 453-650 (659)
74 COG3634 AhpF Alkyl hydroperoxi 97.4 2.7E-05 5.8E-10 68.1 -0.4 35 3-39 455-490 (520)
75 PLN02852 ferredoxin-NADP+ redu 97.4 0.00016 3.5E-09 66.6 4.2 54 7-72 365-419 (491)
76 PRK06854 adenylylsulfate reduc 96.7 0.0024 5.2E-08 60.4 4.9 44 18-71 371-428 (608)
77 KOG0404|consensus 96.6 0.0011 2.4E-08 55.0 1.8 52 4-68 259-312 (322)
78 KOG3851|consensus 95.9 0.0059 1.3E-07 53.2 2.9 56 2-71 297-357 (446)
79 PRK08275 putative oxidoreducta 95.9 0.01 2.2E-07 55.4 4.8 44 17-71 357-401 (554)
80 PRK13800 putative oxidoreducta 95.9 0.0094 2E-07 58.9 4.5 23 17-39 362-385 (897)
81 COG0493 GltD NADPH-dependent g 95.9 0.0077 1.7E-07 55.1 3.6 50 9-71 396-447 (457)
82 PRK07804 L-aspartate oxidase; 95.3 0.028 6.1E-07 52.4 5.2 49 17-72 358-411 (541)
83 KOG0399|consensus 95.1 0.0093 2E-07 59.4 1.2 54 4-70 2060-2115(2142)
84 TIGR02061 aprA adenosine phosp 95.1 0.029 6.3E-07 53.2 4.5 39 23-71 400-439 (614)
85 PRK08071 L-aspartate oxidase; 94.7 0.051 1.1E-06 50.4 5.1 49 17-72 333-386 (510)
86 PRK09231 fumarate reductase fl 94.6 0.052 1.1E-06 51.2 4.8 50 16-72 358-412 (582)
87 PRK09077 L-aspartate oxidase; 94.2 0.076 1.7E-06 49.5 5.1 50 16-72 353-407 (536)
88 PRK06263 sdhA succinate dehydr 94.1 0.065 1.4E-06 50.0 4.4 51 16-72 348-401 (543)
89 PRK05329 anaerobic glycerol-3- 94.0 0.086 1.9E-06 47.8 4.9 61 4-72 357-418 (422)
90 TIGR00551 nadB L-aspartate oxi 94.0 0.1 2.3E-06 47.9 5.5 50 16-72 333-387 (488)
91 TIGR01176 fum_red_Fp fumarate 93.8 0.091 2E-06 49.5 4.8 52 16-72 357-411 (580)
92 PRK08401 L-aspartate oxidase; 93.6 0.13 2.8E-06 47.1 5.2 50 16-72 310-364 (466)
93 COG2509 Uncharacterized FAD-de 93.5 0.077 1.7E-06 48.2 3.6 42 18-71 438-480 (486)
94 COG0029 NadB Aspartate oxidase 93.5 0.11 2.4E-06 47.7 4.6 50 17-73 342-396 (518)
95 TIGR01811 sdhA_Bsu succinate d 93.5 0.12 2.6E-06 48.9 5.1 47 17-71 371-422 (603)
96 PRK07512 L-aspartate oxidase; 93.0 0.18 3.9E-06 46.8 5.4 49 17-72 342-395 (513)
97 PRK07573 sdhA succinate dehydr 93.0 0.15 3.2E-06 48.8 4.8 23 17-39 407-430 (640)
98 PRK06452 sdhA succinate dehydr 92.9 0.19 4.1E-06 47.2 5.3 49 16-71 346-400 (566)
99 PRK08641 sdhA succinate dehydr 92.9 0.12 2.7E-06 48.7 4.1 47 17-71 356-407 (589)
100 PRK06175 L-aspartate oxidase; 92.6 0.21 4.5E-06 45.3 5.0 49 16-71 331-384 (433)
101 PRK07803 sdhA succinate dehydr 92.2 0.2 4.4E-06 47.6 4.6 48 16-71 391-444 (626)
102 PRK06069 sdhA succinate dehydr 91.8 0.25 5.4E-06 46.5 4.7 49 16-71 352-411 (577)
103 PRK08626 fumarate reductase fl 91.6 0.32 6.9E-06 46.6 5.3 23 17-39 373-397 (657)
104 PRK07395 L-aspartate oxidase; 90.7 0.44 9.6E-06 44.7 5.2 48 17-71 348-400 (553)
105 PRK05945 sdhA succinate dehydr 90.4 0.39 8.6E-06 45.1 4.6 52 16-72 351-411 (575)
106 TIGR01812 sdhA_frdA_Gneg succi 89.8 0.51 1.1E-05 44.2 4.9 48 17-71 343-399 (566)
107 PLN02815 L-aspartate oxidase 89.6 0.56 1.2E-05 44.4 4.9 49 16-71 377-430 (594)
108 TIGR01816 sdhA_forward succina 89.5 0.75 1.6E-05 43.2 5.7 40 26-72 351-394 (565)
109 PRK07057 sdhA succinate dehydr 88.5 0.66 1.4E-05 43.8 4.6 49 17-72 362-424 (591)
110 PRK05675 sdhA succinate dehydr 88.2 0.75 1.6E-05 43.3 4.8 50 17-71 340-402 (570)
111 TIGR01372 soxA sarcosine oxida 87.8 0.62 1.4E-05 46.7 4.1 33 26-71 436-468 (985)
112 PRK08274 tricarballylate dehyd 87.5 0.69 1.5E-05 42.1 4.0 52 16-72 399-459 (466)
113 PTZ00139 Succinate dehydrogena 86.9 1.1 2.4E-05 42.6 5.2 51 17-72 380-443 (617)
114 PRK08205 sdhA succinate dehydr 86.3 1.3 2.9E-05 41.7 5.3 49 17-72 357-416 (583)
115 PRK09078 sdhA succinate dehydr 86.2 1.1 2.5E-05 42.3 4.7 40 26-72 383-426 (598)
116 PLN00128 Succinate dehydrogena 84.2 1.5 3.3E-05 41.9 4.6 40 26-72 421-464 (635)
117 PRK08958 sdhA succinate dehydr 84.0 1.5 3.3E-05 41.4 4.5 39 26-71 378-420 (588)
118 PRK12837 3-ketosteroid-delta-1 79.5 4.6 0.0001 37.4 5.9 53 17-73 451-511 (513)
119 TIGR02485 CobZ_N-term precorri 79.0 5.1 0.00011 36.1 5.9 51 17-72 369-428 (432)
120 PRK12834 putative FAD-binding 78.0 4.7 0.0001 37.6 5.6 55 16-71 485-547 (549)
121 PRK12845 3-ketosteroid-delta-1 77.7 6.1 0.00013 37.2 6.2 52 17-72 504-563 (564)
122 COG1053 SdhA Succinate dehydro 77.4 4.5 9.7E-05 38.2 5.2 23 17-39 356-380 (562)
123 PRK12835 3-ketosteroid-delta-1 76.7 3.9 8.4E-05 38.7 4.6 54 16-73 508-569 (584)
124 PRK06481 fumarate reductase fl 75.4 4.8 0.0001 37.2 4.8 51 16-72 442-501 (506)
125 PRK07843 3-ketosteroid-delta-1 75.2 6.5 0.00014 36.9 5.6 54 16-73 495-556 (557)
126 PRK12844 3-ketosteroid-delta-1 75.1 7.4 0.00016 36.5 6.0 56 16-75 488-551 (557)
127 PRK12839 hypothetical protein; 72.4 8.4 0.00018 36.3 5.7 54 16-73 506-567 (572)
128 PRK06134 putative FAD-binding 71.9 9.5 0.00021 36.0 5.9 55 16-74 509-571 (581)
129 PRK12842 putative succinate de 71.1 9.2 0.0002 36.0 5.6 54 16-73 505-566 (574)
130 PRK07121 hypothetical protein; 70.2 11 0.00023 34.7 5.7 53 16-73 429-490 (492)
131 PF14759 Reductase_C: Reductas 69.1 34 0.00075 23.5 9.4 68 85-176 3-70 (85)
132 PRK12843 putative FAD-binding 66.4 12 0.00026 35.2 5.4 54 16-73 510-571 (578)
133 COG1148 HdrA Heterodisulfide r 62.3 15 0.00033 34.3 4.9 50 6-69 485-539 (622)
134 PF03486 HI0933_like: HI0933-l 62.1 8.1 0.00018 35.0 3.2 47 16-69 357-409 (409)
135 TIGR03862 flavo_PP4765 unchara 56.6 12 0.00027 33.4 3.4 49 16-71 319-372 (376)
136 TIGR00136 gidA glucose-inhibit 55.9 15 0.00032 35.1 3.9 38 21-71 348-387 (617)
137 PF08671 SinI: Anti-repressor 55.9 17 0.00037 20.3 2.6 24 159-182 3-26 (30)
138 TIGR01813 flavo_cyto_c flavocy 52.0 7.5 0.00016 35.0 1.3 24 16-39 384-414 (439)
139 PRK05335 tRNA (uracil-5-)-meth 50.9 18 0.00039 33.1 3.5 39 21-72 321-361 (436)
140 PF01134 GIDA: Glucose inhibit 50.0 22 0.00047 32.1 3.8 37 22-71 347-385 (392)
141 PTZ00306 NADH-dependent fumara 49.0 35 0.00077 35.1 5.6 40 27-71 859-899 (1167)
142 TIGR02732 zeta_caro_desat caro 47.9 23 0.0005 32.5 3.8 35 26-70 439-473 (474)
143 TIGR03378 glycerol3P_GlpB glyc 47.3 27 0.00058 31.8 4.0 46 19-70 367-418 (419)
144 TIGR01790 carotene-cycl lycope 46.4 35 0.00076 29.8 4.6 49 16-71 248-297 (388)
145 TIGR02032 GG-red-SF geranylger 46.1 26 0.00055 28.9 3.5 36 27-69 259-294 (295)
146 COG2081 Predicted flavoprotein 44.4 19 0.00041 32.6 2.6 49 17-72 351-405 (408)
147 TIGR02028 ChlP geranylgeranyl 43.3 36 0.00078 30.3 4.2 38 27-71 268-305 (398)
148 PRK11445 putative oxidoreducta 42.4 38 0.00083 29.4 4.2 39 28-73 263-301 (351)
149 PF02787 CPSase_L_D3: Carbamoy 41.8 17 0.00037 27.2 1.6 40 159-198 10-49 (123)
150 TIGR03467 HpnE squalene-associ 41.3 51 0.0011 28.8 4.8 36 26-71 383-418 (419)
151 TIGR02023 BchP-ChlP geranylger 40.5 43 0.00092 29.5 4.2 37 28-71 263-299 (388)
152 COG0644 FixC Dehydrogenases (f 38.5 49 0.0011 29.4 4.3 38 28-72 268-305 (396)
153 PF14504 CAP_assoc_N: CAP-asso 34.3 1.1E+02 0.0025 23.2 5.2 81 96-188 1-81 (141)
154 PLN02463 lycopene beta cyclase 33.9 99 0.0022 28.3 5.6 50 15-71 279-329 (447)
155 TIGR00275 flavoprotein, HI0933 33.5 35 0.00077 30.5 2.6 45 16-67 349-399 (400)
156 PF08491 SE: Squalene epoxidas 32.1 42 0.00092 28.8 2.7 46 20-72 117-166 (276)
157 PF01593 Amino_oxidase: Flavin 31.7 78 0.0017 27.1 4.4 36 26-71 414-450 (450)
158 PLN00093 geranylgeranyl diphos 31.3 64 0.0014 29.4 4.0 39 26-71 306-344 (450)
159 PLN02487 zeta-carotene desatur 30.1 77 0.0017 30.0 4.3 37 26-73 515-552 (569)
160 PRK07233 hypothetical protein; 30.0 81 0.0018 27.7 4.3 38 26-73 393-430 (434)
161 PLN02612 phytoene desaturase 29.8 68 0.0015 30.2 4.0 38 26-73 510-547 (567)
162 PRK10157 putative oxidoreducta 26.3 86 0.0019 28.2 3.8 37 28-71 294-332 (428)
163 TIGR02734 crtI_fam phytoene de 25.3 1.4E+02 0.003 27.3 5.0 37 26-74 456-492 (502)
164 PRK07608 ubiquinone biosynthes 24.8 82 0.0018 27.4 3.4 38 27-71 278-315 (388)
165 TIGR02731 phytoene_desat phyto 23.9 1.1E+02 0.0023 27.6 3.9 36 26-71 418-453 (453)
166 PF01494 FAD_binding_3: FAD bi 23.8 86 0.0019 26.3 3.2 37 28-71 290-326 (356)
167 TIGR02730 carot_isom carotene 23.1 1.2E+02 0.0026 27.7 4.2 36 26-73 456-491 (493)
168 TIGR01988 Ubi-OHases Ubiquinon 22.8 1E+02 0.0022 26.7 3.5 37 28-71 275-311 (385)
169 PRK05320 rhodanese superfamily 22.5 1.2E+02 0.0027 25.5 3.8 46 149-196 44-95 (257)
170 PF04255 DUF433: Protein of un 22.4 2E+02 0.0043 18.0 3.9 26 163-191 22-47 (56)
171 PRK07333 2-octaprenyl-6-methox 22.2 97 0.0021 27.1 3.3 38 27-71 278-315 (403)
172 TIGR01984 UbiH 2-polyprenyl-6- 22.0 1.1E+02 0.0025 26.4 3.7 37 28-71 275-311 (382)
173 PLN02697 lycopene epsilon cycl 21.9 1.4E+02 0.003 28.0 4.4 50 15-70 357-410 (529)
174 PRK07364 2-octaprenyl-6-methox 21.8 1.3E+02 0.0028 26.5 4.0 38 27-71 292-329 (415)
175 PRK07045 putative monooxygenas 21.5 1.5E+02 0.0032 25.9 4.3 38 27-71 283-320 (388)
176 COG3380 Predicted NAD/FAD-depe 20.0 97 0.0021 27.0 2.7 33 27-72 297-329 (331)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.8e-38 Score=285.60 Aligned_cols=177 Identities=32% Similarity=0.530 Sum_probs=163.4
Q ss_pred ccccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCcc
Q psy11186 3 PAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQ 81 (212)
Q Consensus 3 ~~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~ 81 (212)
++|+++||+++ ++|+|+||++| ||.|+|||+|||+ +.++|+|.|.+||++||+|++|......++.
T Consensus 277 LgLe~~Gv~~~-~rg~I~VD~~~~Tnvp~IyA~GDV~------------~~~~Lah~A~~eg~iaa~~i~g~~~~~~d~~ 343 (454)
T COG1249 277 LGLENAGVELD-DRGFIKVDDQMTTNVPGIYAIGDVI------------GGPMLAHVAMAEGRIAAENIAGGKRTPIDYR 343 (454)
T ss_pred CChhhcCceEC-CCCCEEeCCccccCCCCEEEeeccC------------CCcccHhHHHHHHHHHHHHHhCCCCCcCccc
Confidence 67999999999 78999999778 8899999999999 6777999999999999999998555567899
Q ss_pred cceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHH
Q psy11186 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161 (212)
Q Consensus 82 ~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~ 161 (212)
.+|+++|++|++++||+||+||+++++ ++++...+|....++..... ..||+|+++| +++++|||+|++|++|.|+
T Consensus 344 ~iP~~ift~Peia~VGlte~ea~~~g~--~~~~~~~~f~~~~ra~~~~~-~~G~~Klv~d-~~t~~IlGahivg~~A~El 419 (454)
T COG1249 344 LIPSVVFTDPEIASVGLTEEEAKEAGI--DYKVGKFPFAANGRAITMGE-TDGFVKLVVD-KETGRILGAHIVGPGASEL 419 (454)
T ss_pred CCCEEEECCCcceeeeCCHHHHHhcCC--ceEEEEeecccchhHHhccC-CceEEEEEEE-CCCCeEEEEEEECCCHHHH
Confidence 999999999999999999999999875 58888889998888877654 7999999999 8999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHH
Q psy11186 162 IQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 196 (212)
Q Consensus 162 i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~ 196 (212)
|+.++++|+++++++++.+.+++|||++|.+..++
T Consensus 420 I~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a~ 454 (454)
T COG1249 420 INEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454 (454)
T ss_pred HHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHhC
Confidence 99999999999999999999999999999998763
No 2
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.5e-35 Score=269.78 Aligned_cols=189 Identities=24% Similarity=0.325 Sum_probs=165.2
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+++++|++++ ++|+|.||++| ||.|+|||+|||+ +.+.+++.|..||+++|.||+|... ..++..
T Consensus 289 ~l~~~g~~~~-~~G~i~Vd~~~~Ts~~~IyA~GD~~------------~~~~~~~~A~~~G~~aa~~i~g~~~-~~~~~~ 354 (479)
T PRK14727 289 NLEAVGVTTD-TSGAIVVNPAMETSAPDIYAAGDCS------------DLPQFVYVAAAAGSRAGINMTGGNA-TLDLSA 354 (479)
T ss_pred CchhhCceec-CCCCEEECCCeecCCCCEEEeeecC------------CcchhhhHHHHHHHHHHHHHcCCCc-cccccc
Confidence 4678899998 78999999999 9999999999999 5678899999999999999998643 466777
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
.|+++|++|++++||+|++||+..+. ++.+...++..+.++++.. .+.+++||++| +++++|||+|++|+++.|+|
T Consensus 355 ~p~~~~~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~Kli~d-~~~~~ilG~~~~g~~a~e~i 430 (479)
T PRK14727 355 MPAVIFTDPQVATVGLSEAKAHLSGI--ETISRVLTMENVPRALANF-ETDGFIKLVAE-EGTRKLIGAQILAHEGGELI 430 (479)
T ss_pred CCcEEEecCceeeeeCCHHHHHHcCC--ceEEEEEEcccCchhhhcC-CCCeEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 89999999999999999999998864 6777777777777776654 37899999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhhhhcCCCCCCCCCCC
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCS 212 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~~~~~~~~~~~ 212 (212)
+.+++||+.++|+++|.+.+++|||++|.+..+++. +..++.-++||.
T Consensus 431 ~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~--~~~~~~~~~~~~ 478 (479)
T PRK14727 431 QSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQT--FRKDVKELSCCA 478 (479)
T ss_pred HHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHHh--hhhcchhhhhhc
Confidence 999999999999999999999999999999999976 434455567773
No 3
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.7e-35 Score=268.63 Aligned_cols=187 Identities=22% Similarity=0.348 Sum_probs=165.0
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCcccc
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNV 83 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~~ 83 (212)
++++|++.+ +|+|.||++| |+.|+|||+|||+ +.+.+++.|..||++||.||+|.. ...++..+
T Consensus 280 l~~~g~~~~--~G~i~vd~~~~Ts~~~IyA~GD~~------------~~~~~~~~A~~~G~~aa~~i~~~~-~~~~~~~~ 344 (468)
T PRK14694 280 LESIGVETE--RGAIRIDEHLQTTVSGIYAAGDCT------------DQPQFVYVAAAGGSRAAINMTGGD-ASLDLSAM 344 (468)
T ss_pred chhcCcccC--CCeEeeCCCcccCCCCEEEEeecC------------CCcccHHHHHHHHHHHHHHhcCCC-cccccCCC
Confidence 567888864 7999999999 9999999999999 567889999999999999999864 34677789
Q ss_pred eeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHHH
Q psy11186 84 ATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQ 163 (212)
Q Consensus 84 ~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i~ 163 (212)
|+++|++|++++||+|++||+..+. ++++...++....++++.. .+.||+|+++| ++|++|||+|++|+++.|+|+
T Consensus 345 p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~klv~~-~~~~~ilG~~~~g~~a~e~i~ 420 (468)
T PRK14694 345 PEVIFTDPQVATVGLSEAEAQAQGY--DTDSRTLDLENVPRALVNF-DTGGFIKMVAE-RGSGRLLGVQVVAGEAGELIQ 420 (468)
T ss_pred CeEEECCCCeEEeeCCHHHHHHcCC--ceEEEEEecccchhhhhcC-CCceEEEEEEE-CCCCEEEEEEEECCCHHHHHH
Confidence 9999999999999999999998864 6777777787777877654 37899999999 899999999999999999999
Q ss_pred HHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhhhhcCCCCCCCCCCC
Q psy11186 164 GYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCS 212 (212)
Q Consensus 164 ~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~~~~~~~~~~~ 212 (212)
.+++||+.++|+++|.+.+++|||++|.+..+++. +..++..++||.
T Consensus 421 ~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~--~~~~~~~~~~~~ 467 (468)
T PRK14694 421 TAVMALRARMTVNEIADELFPYLTMVEGLKLCAQT--FTKDVKQLSCCA 467 (468)
T ss_pred HHHHHHHCCCCHHHHhccccCCCchHHHHHHHHHh--hhcccchhhhhc
Confidence 99999999999999999999999999999999887 444466778883
No 4
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=2.3e-35 Score=268.95 Aligned_cols=197 Identities=55% Similarity=0.998 Sum_probs=165.9
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+|+++|++++.++|+|+||++| |+.|+|||+|||+. +.+.+++.|.+||+++|+||++......++..
T Consensus 285 ~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~-----------~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ 353 (484)
T TIGR01438 285 NLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILE-----------DKQELTPVAIQAGRLLAQRLFSGSTVICDYEN 353 (484)
T ss_pred CcccccceecCcCCeEecCCCcccCCCCEEEEEEecC-----------CCccchHHHHHHHHHHHHHHhcCCCccccccc
Confidence 4688999987224889999999 99999999999994 35678999999999999999976544467888
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCC-CCceEEEEEEecCCCCeEEEEEEECccHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRN-PQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~ 161 (212)
+|+++|++|++++||+||+||++.++...+.+...++.+..+.++... .+.+|+|++++.+++++|||+|++|+++.|+
T Consensus 354 ~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~ 433 (484)
T TIGR01438 354 VPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEV 433 (484)
T ss_pred CCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHH
Confidence 999999999999999999999987432356666666666555554321 2579999999514689999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhhhhcCCCCCCCCCC
Q psy11186 162 IQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCC 211 (212)
Q Consensus 162 i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~~~~~~~~~~ 211 (212)
|+.+++||++++|++||.+.+++|||++|.+..+++.+|+..++.-+.||
T Consensus 434 I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~~~~~~~~~~~~~~ 483 (484)
T TIGR01438 434 TQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVTKRSGQDILQQGCC 483 (484)
T ss_pred HHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhhhhcCCCchhcccC
Confidence 99999999999999999999999999999999999888887776667888
No 5
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=5e-35 Score=265.01 Aligned_cols=190 Identities=30% Similarity=0.404 Sum_probs=166.2
Q ss_pred ccccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCcc
Q psy11186 3 PAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQ 81 (212)
Q Consensus 3 ~~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~ 81 (212)
++++++|++++ ++|+|+||++| |+.|+|||+|||+ +.+.+++.|.+||+++|.|+++......++.
T Consensus 271 l~l~~~g~~~~-~~G~i~vd~~~~Ts~~~VyAiGD~~------------~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~ 337 (463)
T TIGR02053 271 LGLEKAGVKLD-ERGGILVDETLRTSNPGIYAAGDVT------------GGLQLEYVAAKEGVVAAENALGGANAKLDLL 337 (463)
T ss_pred CCccccCCEEC-CCCcEeECCCccCCCCCEEEeeecC------------CCcccHhHHHHHHHHHHHHhcCCCCCccCcC
Confidence 45788999998 78999999999 9999999999999 4577899999999999999998633446677
Q ss_pred cceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHH
Q psy11186 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161 (212)
Q Consensus 82 ~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~ 161 (212)
.+|+++|++|++++||+|+++|++.+. ++.+...++....++.... .+.+++|+++| +++++|||+|++|+++.|+
T Consensus 338 ~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~ 413 (463)
T TIGR02053 338 VIPRVVFTDPAVASVGLTEAEAQKAGI--ECDCRTLPLTNVPRARINR-DTRGFIKLVAE-PGTGKVLGVQVVAPEAAEV 413 (463)
T ss_pred CCCeEEeccCceEEEeCCHHHHHhcCC--CeEEEEEecccchHHHhcC-CCcEEEEEEEE-CCCCEEEEEEEECCCHHHH
Confidence 789999999999999999999998764 5777766777666655443 47899999999 8899999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhhhhcCCCCCCCCCC
Q psy11186 162 IQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCC 211 (212)
Q Consensus 162 i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~~~~~~~~~~ 211 (212)
|+.++++|++++|+++|.+.+++|||++|.+..+++. +..+++.+.||
T Consensus 414 i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~~--~~~~~~~~~~~ 461 (463)
T TIGR02053 414 INEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQT--FYRDVSKLSCC 461 (463)
T ss_pred HHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHH--hhccccccccc
Confidence 9999999999999999999999999999999999977 55556777777
No 6
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5.7e-35 Score=264.97 Aligned_cols=178 Identities=28% Similarity=0.422 Sum_probs=158.9
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCC-Ccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQM-DYQ 81 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~-~~~ 81 (212)
+|+++|++++ ++|+|.||++| |+.|+|||+|||+ +.+++++.|.+||++||.||+|...... ++.
T Consensus 279 ~l~~~g~~~~-~~g~i~vd~~~~Ts~p~IyAiGD~~------------~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~ 345 (466)
T PRK07818 279 GLEKTGVALT-DRGAIAIDDYMRTNVPHIYAIGDVT------------AKLQLAHVAEAQGVVAAETIAGAETLELGDYR 345 (466)
T ss_pred CchhcCcEEC-CCCcEeeCCCcccCCCCEEEEeecC------------CCcccHhHHHHHHHHHHHHHcCCCCCccCccC
Confidence 3788999998 78999999999 9999999999999 5678999999999999999998654334 788
Q ss_pred cceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHH
Q psy11186 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161 (212)
Q Consensus 82 ~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~ 161 (212)
.+|+++|++|++++||+||+||+..+. ++.+...++....++.... .+.||+|+++| ++|++|||+|++|+++.|+
T Consensus 346 ~~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~Klv~~-~~~~~ilG~~~vg~~a~e~ 421 (466)
T PRK07818 346 MMPRATFCQPQVASFGLTEEQAREEGY--DVKVAKFPFTANGKAHGLG-DPTGFVKLVAD-AKYGELLGGHLIGPDVSEL 421 (466)
T ss_pred CCCeEEECCCCeEEEeCCHHHHHhCCC--cEEEEEEECCccchhhhcC-CCCeEEEEEEE-CCCCeEEEEEEECCCHHHH
Confidence 899999999999999999999998864 5777776777666655443 47899999999 8899999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 162 IQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 162 i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
|+.+++||++++|+++|.+.+++|||++|.+.++++.
T Consensus 422 i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 458 (466)
T PRK07818 422 LPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFHG 458 (466)
T ss_pred HHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999876
No 7
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=3.4e-35 Score=265.19 Aligned_cols=176 Identities=39% Similarity=0.660 Sum_probs=154.8
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+|+++|++++ ++|+|.||++| ||.|+|||+|||+ +.+.+++.|.+||+++|+|++|......++..
T Consensus 269 ~l~~~g~~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~------------~~~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~ 335 (446)
T TIGR01424 269 GLEAAGVELN-DAGAIAVDEYSRTSIPSIYAVGDVT------------DRINLTPVAIMEATCFANTEFGNNPTKFDHDL 335 (446)
T ss_pred CccccCeEEC-CCCcEEeCCCCccCCCCEEEeeccC------------CCccchhHHHHHHHHHHHHHhcCCCCccCcCC
Confidence 4788999998 78999999999 9999999999999 56789999999999999999986544567788
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+||+||+..++ .++.+...++.+..+.+..+ .+.||+||++| ++|++|||+|++|+++.|+|
T Consensus 336 ~p~~if~~p~ia~vG~te~~a~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i 412 (446)
T TIGR01424 336 IATAVFSQPPLGTVGLTEEEAREKFT-GDILVYRAGFRPMKNTFSGR-QEKTLMKLVVD-EKDDKVLGAHMVGPDAAEII 412 (446)
T ss_pred CCeEEeCCchhEEEECCHHHHHhhcC-CCEEEEEEecCchHhHhhcC-CCceEEEEEEe-CCCCEEEEEEEECCCHHHHH
Confidence 99999999999999999999998742 35777666666655554433 37899999999 89999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHH
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV 195 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~ 195 (212)
+.++++|++++|+++|.+.+++|||++|.+.++
T Consensus 413 ~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 445 (446)
T TIGR01424 413 QGIAIALKMGATKADFDSTVGIHPSSAEEFVTM 445 (446)
T ss_pred HHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence 999999999999999999999999999998765
No 8
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=6.2e-35 Score=265.25 Aligned_cols=185 Identities=27% Similarity=0.366 Sum_probs=162.8
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
.++++|++++ ++|+|+||++| |+.|+|||+|||+ +.+.+++.|.+||+++|+||+|.. ...++..
T Consensus 280 ~~~~~gl~~~-~~G~I~Vd~~~~t~~p~VyAiGDv~------------~~~~la~~A~~eG~~aa~~i~g~~-~~~~~~~ 345 (471)
T PRK06467 280 DAEKAGVEVD-ERGFIRVDKQCRTNVPHIFAIGDIV------------GQPMLAHKGVHEGHVAAEVIAGKK-HYFDPKV 345 (471)
T ss_pred ChhhcCceEC-CCCcEeeCCCcccCCCCEEEehhhc------------CCcccHHHHHHHHHHHHHHHcCCC-CCCCCCC
Confidence 4678899998 79999999999 9999999999999 567899999999999999999864 3477778
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+||+||++.+. ++++...++....++.... .+.||+|+++| ++|++|||+|++|+++.|+|
T Consensus 346 ~p~~~~~~p~ia~vGlte~ea~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~kli~d-~~t~~ilG~~~vg~~a~e~i 421 (471)
T PRK06467 346 IPSIAYTEPEVAWVGLTEKEAKEEGI--EYETATFPWAASGRAIASD-CADGMTKLIFD-KETHRVLGGAIVGTNAGELL 421 (471)
T ss_pred CCeEEECCCceeEEECCHHHHHhcCC--CeEEEEEecCcchhhhhCC-CCceEEEEEEE-CCCCeEEEEEEECCCHHHHH
Confidence 89999999999999999999998864 6777777777666665433 47899999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhhhhcCCCCCCC
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQ 208 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~~~~~~~ 208 (212)
+.++++|++++|+++|.+.+++|||++|.+..+++. +.+++.+.
T Consensus 422 ~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~--~~~~~~~~ 465 (471)
T PRK06467 422 GEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEA--FEGSITDL 465 (471)
T ss_pred HHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHh--hcCCcccC
Confidence 999999999999999999999999999999999876 55555554
No 9
>PLN02507 glutathione reductase
Probab=100.00 E-value=6.2e-35 Score=266.95 Aligned_cols=177 Identities=38% Similarity=0.640 Sum_probs=157.2
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+|+++|++++ ++|+|+||++| ||.|+|||+|||+ +.+.+++.|.+||+++|+||+|......++..
T Consensus 306 ~l~~~gl~~~-~~G~I~Vd~~~~Ts~p~IyAiGDv~------------~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~ 372 (499)
T PLN02507 306 NLEAVGVELD-KAGAVKVDEYSRTNIPSIWAIGDVT------------NRINLTPVALMEGTCFAKTVFGGQPTKPDYEN 372 (499)
T ss_pred CchhhCcEEC-CCCcEecCCCCcCCCCCEEEeeEcC------------CCCccHHHHHHHHHHHHHHHcCCCCCcCCCCC
Confidence 3778999998 78999999999 9999999999999 56779999999999999999986555567888
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+||+||+..++ .++.+...++.+..++++.. .+.+++||++| +++++|||+|++|+++.++|
T Consensus 373 ~p~~if~~p~ia~vGlte~ea~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~g~~Kli~d-~~t~~ilG~~~vg~~a~e~i 449 (499)
T PLN02507 373 VACAVFCIPPLSVVGLSEEEAVEQAK-GDILVFTSSFNPMKNTISGR-QEKTVMKLIVD-AETDKVLGASMCGPDAPEIM 449 (499)
T ss_pred CCeEEECCCccEEEeCCHHHHHhccC-CCEEEEEeecCccccccccC-CCCEEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 89999999999999999999998743 35667666777666666653 36899999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHH
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 196 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~ 196 (212)
+.+++||++++|+++|.+.+++|||++|.+..++
T Consensus 450 ~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~ 483 (499)
T PLN02507 450 QGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMR 483 (499)
T ss_pred HHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHH
Confidence 9999999999999999999999999999999876
No 10
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=7.1e-35 Score=262.52 Aligned_cols=177 Identities=23% Similarity=0.337 Sum_probs=157.5
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCC-CCcCCCcc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGN-GTTQMDYQ 81 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~-~~~~~~~~ 81 (212)
.++++|++++ ++|+|.||++| ||.|+|||+|||+ +.++++|.|..+|+++++|++|. .....++.
T Consensus 260 ~~~~~gl~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~------------~~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~ 326 (441)
T PRK08010 260 HPENAGIAVN-ERGAIVVDKYLHTTADNIWAMGDVT------------GGLQFTYISLDDYRIVRDELLGEGKRSTDDRK 326 (441)
T ss_pred CchhcCcEEC-CCCcEEECCCcccCCCCEEEeeecC------------CCccchhHHHHHHHHHHHHHcCCCCcccCccC
Confidence 4678899998 78999999999 9999999999999 67789999999999999999985 22345777
Q ss_pred cceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHH
Q psy11186 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161 (212)
Q Consensus 82 ~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~ 161 (212)
.+|+++|++|++++||+||+||++.+. ++.+...++....++.... .+.|++|+++| ++|++|||+|++|+++.|+
T Consensus 327 ~~p~~~~~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~ 402 (441)
T PRK08010 327 NVPYSVFMTPPLSRVGMTEEQARESGA--DIQVVTLPVAAIPRARVMN-DTRGVLKAIVD-NKTQRILGASLLCVDSHEM 402 (441)
T ss_pred CCCEEEECCCCceeeeCCHHHHHHcCC--CeEEEEEecCcChhhhhcC-CCceEEEEEEE-CCCCEEEEEEEECCCHHHH
Confidence 899999999999999999999998864 6777777777777765544 36889999999 8899999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHh
Q psy11186 162 IQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI 197 (212)
Q Consensus 162 i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~ 197 (212)
|+.++.+|++++|+++|.+.+++|||++|.+..++.
T Consensus 403 i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 403 INIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred HHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 999999999999999999999999999999998874
No 11
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=6.8e-35 Score=263.27 Aligned_cols=177 Identities=45% Similarity=0.721 Sum_probs=156.0
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCC-cCCCcc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGT-TQMDYQ 81 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~-~~~~~~ 81 (212)
+++++|++++ ++|+|+||++| |+.|+|||+|||+ +.+.+++.|.+||+++|+||+|... ...++.
T Consensus 271 ~l~~~g~~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~------------~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~ 337 (450)
T PRK06116 271 GLENAGVKLN-EKGYIIVDEYQNTNVPGIYAVGDVT------------GRVELTPVAIAAGRRLSERLFNNKPDEKLDYS 337 (450)
T ss_pred CchhcCceEC-CCCcEecCCCCCcCCCCEEEEeecC------------CCcCcHHHHHHHHHHHHHHHhCCCCCCcCCcC
Confidence 4778899998 78999999999 9999999999999 5678999999999999999998654 456788
Q ss_pred cceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHH
Q psy11186 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161 (212)
Q Consensus 82 ~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~ 161 (212)
.+|+++|++|++++||+|++||+..++...+.+...++.+..+.+... .+.|++||++| +++++|||+|++|+++.|+
T Consensus 338 ~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~klv~~-~~~~~ilG~~~~g~~a~e~ 415 (450)
T PRK06116 338 NIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGH-RQPCLMKLVVV-GKEEKVVGLHGIGFGADEM 415 (450)
T ss_pred CCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcC-CCceEEEEEEE-CCCCEEEEEEEECCCHHHH
Confidence 899999999999999999999998875334777766676655554443 37899999999 8899999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHH
Q psy11186 162 IQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV 195 (212)
Q Consensus 162 i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~ 195 (212)
|+.+++||++++|+++|.+.+++|||++|.+.++
T Consensus 416 i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T PRK06116 416 IQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM 449 (450)
T ss_pred HHHHHHHHHCCCCHHHHhcccccCCChHHHHhhc
Confidence 9999999999999999999999999999998765
No 12
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=9.3e-35 Score=268.77 Aligned_cols=189 Identities=26% Similarity=0.384 Sum_probs=166.0
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+++++|++++ ++|+|+||++| ||.|+|||+|||+ +.+.+++.|..||++||.||+|.. ...++..
T Consensus 371 ~l~~~g~~~~-~~g~i~vd~~~~Ts~~~IyA~GD~~------------~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~ 436 (561)
T PRK13748 371 ALDAAGVTVN-AQGAIVIDQGMRTSVPHIYAAGDCT------------DQPQFVYVAAAAGTRAAINMTGGD-AALDLTA 436 (561)
T ss_pred CchhcCceEC-CCCCEeECCCcccCCCCEEEeeecC------------CCccchhHHHHHHHHHHHHHcCCC-cccCCCC
Confidence 4678999998 78999999999 9999999999999 567889999999999999999864 3466777
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
.|+++|++|++++||+|+++|+..+. ++.+..+++....++++.. .+.+|+||++| +++++|||+|++|+++.++|
T Consensus 437 ~p~~~~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i 512 (561)
T PRK13748 437 MPAVVFTDPQVATVGYSEAEAHHDGI--ETDSRTLTLDNVPRALANF-DTRGFIKLVIE-EGSGRLIGVQAVAPEAGELI 512 (561)
T ss_pred CCeEEEccCCceeeeCCHHHHHHcCC--CeEEEEEecccCchhhhcC-CCCeEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 88999999999999999999998764 5777777777777776653 37899999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhhhhcCCCCCCCCCCC
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCCS 212 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~~~~~~~~~~~ 212 (212)
+.++++|+.++|+++|.+.+++|||++|.+..+++. +..++.-++||.
T Consensus 513 ~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~--~~~~~~~~~~~~ 560 (561)
T PRK13748 513 QTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQT--FNKDVKQLSCCA 560 (561)
T ss_pred HHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHHH--hhccchhhhhhc
Confidence 999999999999999999999999999999999976 545555678884
No 13
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=8.7e-35 Score=263.06 Aligned_cols=177 Identities=27% Similarity=0.388 Sum_probs=155.0
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCC-cCCCccc
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGT-TQMDYQN 82 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~-~~~~~~~ 82 (212)
++++|++++ ++|+|+||++| ||.|+|||+|||+ +.+++++.|.+||+++|+|++|... ...++..
T Consensus 272 ~~~~gl~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~------------~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~ 338 (452)
T TIGR03452 272 AEAAGVEVD-EDGRIKVDEYGRTSARGVWALGDVS------------SPYQLKHVANAEARVVKHNLLHPNDLRKMPHDF 338 (452)
T ss_pred chhcCeeEC-CCCcEeeCCCcccCCCCEEEeeccc------------CcccChhHHHHHHHHHHHHhcCCCCcccCCCCC
Confidence 577899998 78999999999 9999999999999 5678999999999999999998643 3467778
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+||+||+..+. ++++...++....++.... .+.+|+|+++| ++|++|||+|++|+++.|+|
T Consensus 339 ~p~~i~t~p~ia~vGlte~ea~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~Klv~d-~~t~~ilG~~~vg~~a~e~i 414 (452)
T TIGR03452 339 VPSAVFTHPQIATVGLTEQEAREAGH--DITVKIQNYGDVAYGWAME-DTTGFCKLIAD-RDTGKLLGAHIIGPQASSLI 414 (452)
T ss_pred CCeEEECCCCeeeeeCCHHHHHhcCC--CeEEEEecCCchhhHhhcC-CCCeEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 99999999999999999999998764 5666666666655554433 47899999999 89999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhh-cccCCCCchhhHHHHHhh
Q psy11186 163 QGYAAAVKCGLTFETLES-TVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~-~~~~~P~~~e~~~~~~~~ 198 (212)
+.+++||++++|+++|.+ .+++|||++|.+..+++.
T Consensus 415 ~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~ 451 (452)
T TIGR03452 415 QPLITAMAFGLDAREMARKQYWIHPALPEVVENALLG 451 (452)
T ss_pred HHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhc
Confidence 999999999999999999 588999999999988754
No 14
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.2e-34 Score=262.51 Aligned_cols=178 Identities=22% Similarity=0.360 Sum_probs=159.5
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+++++|++++ ++|+|+||++| |+.|+|||+|||+ +.+.+++.|.+||+++|+||++......++..
T Consensus 277 ~l~~~g~~~~-~~G~i~vd~~l~t~~~~IyAiGD~~------------~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~ 343 (463)
T PRK06370 277 GLEAAGVETD-ARGYIKVDDQLRTTNPGIYAAGDCN------------GRGAFTHTAYNDARIVAANLLDGGRRKVSDRI 343 (463)
T ss_pred CchhhCceEC-CCCcEeECcCCcCCCCCEEEeeecC------------CCcccHHHHHHHHHHHHHHHhCCCCCCccccc
Confidence 4778899998 78999999999 9999999999999 46778999999999999999986444567778
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+|++||+..+. ++++...++....+++... .+.|++|+++| ++|++|||+|++|+++.|+|
T Consensus 344 ~p~~~~~~p~ia~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i 419 (463)
T PRK06370 344 VPYATYTDPPLARVGMTEAEARKSGR--RVLVGTRPMTRVGRAVEKG-ETQGFMKVVVD-ADTDRILGATILGVHGDEMI 419 (463)
T ss_pred CCeEEEcCCCcEeeeCCHHHHHHcCC--CeEEEEEecCcchhHHhcC-CCCEEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 89999999999999999999998754 6777777777766665433 47899999999 89999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
+.++++|+.++|++||.+.+++|||++|.+..+++.
T Consensus 420 ~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~ 455 (463)
T PRK06370 420 HEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQA 455 (463)
T ss_pred HHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999977
No 15
>PLN02546 glutathione reductase
Probab=100.00 E-value=1e-34 Score=268.11 Aligned_cols=176 Identities=43% Similarity=0.733 Sum_probs=157.1
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+|+++|++++ ++|+|+||++| |+.|+|||+|||+ +.+.+++.|.+||+++|.||+|......++..
T Consensus 356 ~le~~gl~~d-~~G~I~VD~~l~Ts~p~IYAaGDv~------------~~~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~ 422 (558)
T PLN02546 356 GLEEVGVKMD-KNGAIEVDEYSRTSVPSIWAVGDVT------------DRINLTPVALMEGGALAKTLFGNEPTKPDYRA 422 (558)
T ss_pred ChhhcCCcCC-CCCcEeECCCceeCCCCEEEeeccC------------CCcccHHHHHHHHHHHHHHHcCCCCCcCCCCC
Confidence 4688999998 78999999999 9999999999999 56789999999999999999986544467788
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+||+||++.|+ ++++....+.+..+++... .+.+|+||+++ +++++|||+|++|+++.|+|
T Consensus 423 vp~~vft~Peia~VGlte~eA~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~Klv~d-~~t~~ILGa~ivG~~a~elI 498 (558)
T PLN02546 423 VPSAVFSQPPIGQVGLTEEQAIEEYG--DVDVFTANFRPLKATLSGL-PDRVFMKLIVC-AKTNKVLGVHMCGEDAPEII 498 (558)
T ss_pred CCEEEeCCchHhhccCCHHHHHHcCC--CeEEEEEecccchhhhhCC-CCcEEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 99999999999999999999998865 5777777777665555433 36899999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHH
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 196 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~ 196 (212)
+.+++||++++|+++|.+.+++|||++|.+..++
T Consensus 499 ~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~ 532 (558)
T PLN02546 499 QGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMR 532 (558)
T ss_pred HHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHh
Confidence 9999999999999999999999999999999887
No 16
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.6e-34 Score=261.30 Aligned_cols=177 Identities=40% Similarity=0.739 Sum_probs=153.6
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCC-CcCCCcc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNG-TTQMDYQ 81 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~-~~~~~~~ 81 (212)
+|+++|++++ ++|+|.||++| |+.|+|||+|||+ +.+.+++.|.+||+++|+||+|.. ....++.
T Consensus 271 ~l~~~g~~~~-~~G~i~vd~~~~T~~p~IyAiGD~~------------~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 337 (450)
T TIGR01421 271 GLENVGIKLN-EKGQIIVDEYQNTNVPGIYALGDVV------------GKVELTPVAIAAGRKLSERLFNGKTDDKLDYN 337 (450)
T ss_pred CccccCcEEC-CCCcEEeCCCCcCCCCCEEEEEecC------------CCcccHHHHHHHHHHHHHHHhcCCCCCccCcc
Confidence 4788999998 78999999999 9999999999999 577899999999999999999653 3346788
Q ss_pred cceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHH
Q psy11186 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161 (212)
Q Consensus 82 ~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~ 161 (212)
.+|+++|++|++++||+|++||++.++.+.+.+...++.+..+.+..+ .+.|++|+++| +++++|||+|++|++|.|+
T Consensus 338 ~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~~klv~~-~~~~~ilG~~~~g~~a~e~ 415 (450)
T TIGR01421 338 NVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSE-KQKCRMKLVCA-GKEEKVVGLHGIGDGVDEM 415 (450)
T ss_pred cCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcC-CCceEEEEEEE-CCCCEEEEEEEECCCHHHH
Confidence 999999999999999999999987643234666666666544444333 47899999999 8999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHH
Q psy11186 162 IQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRV 195 (212)
Q Consensus 162 i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~ 195 (212)
|+.++++|++++|+++|.+.+++|||++|.+..+
T Consensus 416 i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T TIGR01421 416 LQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM 449 (450)
T ss_pred HHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence 9999999999999999999999999999988764
No 17
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=2e-34 Score=260.64 Aligned_cols=177 Identities=27% Similarity=0.379 Sum_probs=155.9
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCC-CcCCCccc
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNG-TTQMDYQN 82 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~-~~~~~~~~ 82 (212)
++++|++++ ++|+|+||++| |+.|+|||+|||+ +.+++++.|.+||+++|+|+++.. ....++..
T Consensus 269 ~~~~gl~~~-~~G~i~Vd~~~~Ts~p~IyA~GD~~------------~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~ 335 (451)
T PRK07846 269 AAAAGVDVD-EDGRVVVDEYQRTSAEGVFALGDVS------------SPYQLKHVANHEARVVQHNLLHPDDLIASDHRF 335 (451)
T ss_pred chhcCceEC-CCCcEeECCCcccCCCCEEEEeecC------------CCccChhHHHHHHHHHHHHHcCCCCccccCCCC
Confidence 578899998 78999999999 9999999999999 466899999999999999999753 23456778
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+|++||+..+. ++.+...++....+++... .+.|++||++| ++|++|||+|++|+++.|+|
T Consensus 336 ~p~~if~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~Kli~d-~~~~~ilG~~~~g~~a~e~i 411 (451)
T PRK07846 336 VPAAVFTHPQIASVGLTENEARAAGL--DITVKVQNYGDVAYGWAME-DTTGFVKLIAD-RDTGRLLGAHIIGPQASTLI 411 (451)
T ss_pred CCeEEECCCCcEeEeCCHHHHHhcCC--CEEEEEEecCcchhhhhCC-CCceEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 89999999999999999999998764 6777777777766665333 37899999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhc-ccCCCCchhhHHHHHhh
Q psy11186 163 QGYAAAVKCGLTFETLEST-VGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~-~~~~P~~~e~~~~~~~~ 198 (212)
+.+++||++++|+++|.+. +++|||++|.+..+++.
T Consensus 412 ~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~ 448 (451)
T PRK07846 412 QPLIQAMSFGLDAREMARGQYWIHPALPEVVENALLG 448 (451)
T ss_pred HHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHHHh
Confidence 9999999999999999985 68999999999988865
No 18
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=2.2e-34 Score=262.48 Aligned_cols=177 Identities=31% Similarity=0.551 Sum_probs=152.9
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+|+++|++++ ++|+|+||++| |+.|+|||+|||+ +.+++++.|.+||+++|+||+|......++..
T Consensus 294 ~l~~~gl~~~-~~G~I~Vd~~l~Ts~~~IyA~GDv~------------~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~ 360 (486)
T TIGR01423 294 QLDKVGVELT-KKGAIQVDEFSRTNVPNIYAIGDVT------------DRVMLTPVAINEGAAFVDTVFGNKPRKTDHTR 360 (486)
T ss_pred CchhhCceEC-CCCCEecCCCCcCCCCCEEEeeecC------------CCcccHHHHHHHHHHHHHHHhCCCCcccCCCC
Confidence 4678899998 78999999999 9999999999999 67889999999999999999986544467778
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|+.|++++||+||+||++.+ ..+.+....+.+...+.+....+.+|+||++| +++++|||+|++|+++.++|
T Consensus 361 vp~~vft~peia~vGlte~eA~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d-~~~~~iLGa~ivg~~a~elI 437 (486)
T TIGR01423 361 VASAVFSIPPIGTCGLVEEDAAKKF--EKVAVYESSFTPLMHNISGSKYKKFVAKIVTN-HADGTVLGVHLLGDSSPEII 437 (486)
T ss_pred CCEEEeCCCceEEeeCCHHHHHhcC--CceEEEEEeeCchhhhhccCccCceEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 9999999999999999999999864 24555555555444443322123699999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHH
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 196 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~ 196 (212)
+.+++||+.++|+++|.+.+++|||++|.+..+.
T Consensus 438 ~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~ 471 (486)
T TIGR01423 438 QAVGICLKLNAKISDFYNTIGVHPTSAEELCSMR 471 (486)
T ss_pred HHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence 9999999999999999999999999999999886
No 19
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=2.6e-34 Score=260.79 Aligned_cols=178 Identities=24% Similarity=0.334 Sum_probs=157.9
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+|+++|++++ ++|+|.||++| |+.|+|||+|||+ +.+++++.|..||+++++|++|....+.++..
T Consensus 280 ~l~~~gl~~~-~~G~i~Vd~~~~Ts~~~IyA~GD~~------------~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~ 346 (466)
T PRK07845 280 GLEEAGVELT-PSGHITVDRVSRTSVPGIYAAGDCT------------GVLPLASVAAMQGRIAMYHALGEAVSPLRLKT 346 (466)
T ss_pred CchhhCceEC-CCCcEeECCCcccCCCCEEEEeecc------------CCccchhHHHHHHHHHHHHHcCCCCCcCCCCC
Confidence 4788999998 78999999999 9999999999999 56789999999999999999986544567888
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+|+++|+..+. ++++...++....++...+ .+.||+|+++| +++++|||+|++|+++.|+|
T Consensus 347 ~p~~vf~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i 422 (466)
T PRK07845 347 VASNVFTRPEIATVGVSQAAIDSGEV--PARTVMLPLATNPRAKMSG-LRDGFVKLFCR-PGTGVVIGGVVVAPRASELI 422 (466)
T ss_pred CCEEEeCCCcceeecCCHHHHHhCCC--ceEEEEEecccCchhhhcC-CCceEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 99999999999999999999998754 5777666676655544333 47899999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
+.+++||++++|+++|.+.+++|||++|.+..+++.
T Consensus 423 ~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 458 (466)
T PRK07845 423 LPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAARR 458 (466)
T ss_pred HHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999988875
No 20
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.2e-34 Score=260.40 Aligned_cols=178 Identities=27% Similarity=0.392 Sum_probs=157.8
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+++++|++++ ++|+|.||++| ||.|+|||+|||+ +.+++++.|.+||+++|.||.+......++..
T Consensus 274 ~l~~~g~~~~-~~g~i~vd~~~~ts~~~IyA~GD~~------------~~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~ 340 (460)
T PRK06292 274 GLENTGIELD-ERGRPVVDEHTQTSVPGIYAAGDVN------------GKPPLLHEAADEGRIAAENAAGDVAGGVRYHP 340 (460)
T ss_pred CcHhhCCEec-CCCcEeECCCcccCCCCEEEEEecC------------CCccchhHHHHHHHHHHHHhcCCCCCCcCCCC
Confidence 4678899998 78999999999 9999999999999 56678999999999999999985333466778
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+.+|++|++++||+|+++|++.+. ++++...++....++.... .+.|++||++| +++++|||+|++|+++.|+|
T Consensus 341 ~p~~~~~~~~~a~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~klv~d-~~~~~ilG~~~vg~~a~e~i 416 (460)
T PRK06292 341 IPSVVFTDPQIASVGLTEEELKAAGI--DYVVGEVPFEAQGRARVMG-KNDGFVKVYAD-KKTGRLLGAHIIGPDAEHLI 416 (460)
T ss_pred CCeEEECCCccEEeECCHHHHHhcCC--CeEEEEEecccchHHHhcC-CCCeEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 89999999999999999999998754 5777766777666655443 47899999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
+.++++|++++|+++|.+.+++|||++|.+.++++.
T Consensus 417 ~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 452 (460)
T PRK06292 417 HLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRD 452 (460)
T ss_pred HHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999876
No 21
>KOG4716|consensus
Probab=100.00 E-value=5.5e-35 Score=248.92 Aligned_cols=198 Identities=65% Similarity=1.106 Sum_probs=188.5
Q ss_pred ccccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCcc
Q psy11186 3 PAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQ 81 (212)
Q Consensus 3 ~~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~ 81 (212)
++|+++|++++..+|.|.||+.- ||.|+|||+||+.. ++|.|+++|++.||.+|+.+++......+|.
T Consensus 305 l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~-----------~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~ 373 (503)
T KOG4716|consen 305 LNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILE-----------DKPELTPVAIQSGRLLARRLFAGSTQLMDYD 373 (503)
T ss_pred cCCCccceeecccCCccccChHHhcCCCceEEecceec-----------CCcccchhhhhhchHHHHHHhcCcceeeecc
Confidence 68999999997567999999999 99999999999997 8999999999999999999998888889999
Q ss_pred cceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHH
Q psy11186 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161 (212)
Q Consensus 82 ~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~ 161 (212)
.+|+.+|+.++++.+||+|++|-+.++.+++++++..|.|..+.+++++....++|++++..++.|++|.|++|++|+|.
T Consensus 374 ~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV 453 (503)
T KOG4716|consen 374 DVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEV 453 (503)
T ss_pred CCceeeecchhccccCCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHH
Confidence 99999999999999999999999999999999999999999999998776779999999856789999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhhhhcCCCCCCCCCC
Q psy11186 162 IQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPTPQSCC 211 (212)
Q Consensus 162 i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~~~~~~~~~~ 211 (212)
++.++.|++.|+|..+|.+.+..||+.+|.+.++.++||++.||...|||
T Consensus 454 ~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft~L~itKrsG~d~~~as~C 503 (503)
T KOG4716|consen 454 IQGFAAALKCGLTKKDLDNTIGIHPTTAEEFTTLSITKRSGLDPTQASCC 503 (503)
T ss_pred HHHHHHHHHhcccHHHHhhcccccccchhheeEEEEEecCCCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999
No 22
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=7.4e-34 Score=257.86 Aligned_cols=176 Identities=20% Similarity=0.376 Sum_probs=156.1
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+++++|++++ ++| +.||++| ||.|+|||+|||+ +.+++++.|.+||+++|+||+|.. ...++..
T Consensus 282 ~~~~~g~~~~-~~G-~~vd~~~~Ts~~~IyA~GD~~------------~~~~la~~A~~~g~~aa~~i~~~~-~~~~~~~ 346 (466)
T PRK06115 282 GLETVGLETD-KRG-MLANDHHRTSVPGVWVIGDVT------------SGPMLAHKAEDEAVACIERIAGKA-GEVNYGL 346 (466)
T ss_pred CcccccceeC-CCC-EEECCCeecCCCCEEEeeecC------------CCcccHHHHHHHHHHHHHHHcCCC-CCCCCCC
Confidence 4678899987 567 8899999 9999999999999 567899999999999999999864 3467788
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+|+++|+..+. ++.+...++....+..... .+.||+||++| ++|++|||+|++|+++.|+|
T Consensus 347 ~p~~~~t~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~klv~~-~~~~~ilG~~~~g~~a~e~i 422 (466)
T PRK06115 347 IPGVIYTRPEVATVGKTEEQLKAEGR--AYKVGKFPFTANSRAKINH-ETEGFAKILAD-ARTDEVLGVHMVGPSVSEMI 422 (466)
T ss_pred CCeEEECCcccEEeeCCHHHHHHCCC--CEEEEEEecccChhhHhcC-CCceEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 99999999999999999999998764 6777766777766655443 36899999999 89999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
+.+++||+.++|++||.+.+++|||++|.+..+++.
T Consensus 423 ~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~~ 458 (466)
T PRK06115 423 GEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMN 458 (466)
T ss_pred HHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999865
No 23
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=7.7e-34 Score=256.90 Aligned_cols=177 Identities=24% Similarity=0.336 Sum_probs=157.4
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+++++|++++ ++|+|.||++| |+.|+|||+|||+ +.+.+++.|.+||+++|.|+.|... ..++..
T Consensus 278 ~l~~~g~~~~-~~G~i~vd~~~~t~~~~IyAiGD~~------------~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~ 343 (461)
T PRK05249 278 NLENAGLEAD-SRGQLKVNENYQTAVPHIYAVGDVI------------GFPSLASASMDQGRIAAQHAVGEAT-AHLIED 343 (461)
T ss_pred CchhhCcEec-CCCcEeeCCCcccCCCCEEEeeecC------------CCcccHhHHHHHHHHHHHHHcCCCc-ccccCC
Confidence 4788899998 78999999999 9999999999999 5677899999999999999997643 467778
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|+.|++++||+|++||+..+. ++++...++....++...+ .+.|++|+++| +++++|||+|++|++|.|+|
T Consensus 344 ~p~~i~~~p~ia~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~klv~~-~~~~~ilG~~~~g~~a~e~i 419 (461)
T PRK05249 344 IPTGIYTIPEISSVGKTEQELTAAKV--PYEVGRARFKELARAQIAG-DNVGMLKILFH-RETLEILGVHCFGERATEII 419 (461)
T ss_pred CCeEEECCCcceEecCCHHHHHHcCC--CeEEEEEccccccceeecC-CCCcEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 99999999999999999999998764 5777766777666655443 37899999999 89999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
+.+++||+.++|+++|.+.+++|||++|.+..+++.
T Consensus 420 ~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~ 455 (461)
T PRK05249 420 HIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAALD 455 (461)
T ss_pred HHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999988765
No 24
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-33 Score=264.77 Aligned_cols=180 Identities=23% Similarity=0.390 Sum_probs=155.4
Q ss_pred cccccCCeeccCCCceecCCCC-CC------CCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCC--
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TN------IPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNG-- 74 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts------~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~-- 74 (212)
+|+++|++++ +|+|.||++| |+ .|+|||+|||+ +.++++|.|.+||+++|+||+|..
T Consensus 433 ~l~~~gi~~~--~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~------------g~~~La~~A~~qg~~aa~ni~g~~~~ 498 (659)
T PTZ00153 433 GLDKLKIQMK--RGFVSVDEHLRVLREDQEVYDNIFCIGDAN------------GKQMLAHTASHQALKVVDWIEGKGKE 498 (659)
T ss_pred CchhcCCccc--CCEEeECCCCCcCCCCCCCCCCEEEEEecC------------CCccCHHHHHHHHHHHHHHHcCCCcc
Confidence 4678899886 6999999999 87 69999999998 678999999999999999999862
Q ss_pred ----------CcCCCcccceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCC---------------
Q psy11186 75 ----------TTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQR--------------- 129 (212)
Q Consensus 75 ----------~~~~~~~~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 129 (212)
...+++..+|+++|++|++++||+||+||++.++++++.+....+....+.+...
T Consensus 499 ~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~ 578 (659)
T PTZ00153 499 NVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNK 578 (659)
T ss_pred ccccccccccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhccccccccccccccccc
Confidence 3346788899999999999999999999998865455666666666554433211
Q ss_pred ------CCCceEEEEEEecCCCCeEEEEEEECccHHHHHHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 130 ------NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 130 ------~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
+.+.||+||+++ ++|++|||+|++|+++.++|+.++++|++++|++||.+.+++|||++|.+..++++
T Consensus 579 g~~~~~~~~~G~vKli~d-~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~ 652 (659)
T PTZ00153 579 GKYNTVDNTEGMVKIVYL-KDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKA 652 (659)
T ss_pred cccccccCCceEEEEEEE-CCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHH
Confidence 126899999999 88999999999999999999999999999999999999999999999999999987
No 25
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.8e-33 Score=254.57 Aligned_cols=177 Identities=27% Similarity=0.440 Sum_probs=156.1
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
.++++|++++ ++|+|.||++| |+.|+|||+|||+ +.+.+++.|..||+++|.|+.|... ..++..
T Consensus 290 ~~~~~g~~~~-~~G~i~vd~~~~Ts~~~VyA~GD~~------------~~~~~~~~A~~~G~~aa~~i~g~~~-~~~~~~ 355 (475)
T PRK06327 290 GLEAVGLKLD-ERGFIPVDDHCRTNVPNVYAIGDVV------------RGPMLAHKAEEEGVAVAERIAGQKG-HIDYNT 355 (475)
T ss_pred CcHhhCceeC-CCCeEeECCCCccCCCCEEEEEecc------------CCcchHHHHHHHHHHHHHHHcCCCC-CCCCCC
Confidence 4577899998 78999999999 9999999999999 5677999999999999999998643 357778
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+|+++|++.+. ++.+...++....++.... .+.||+|+++| +++++|||+|++|+++.++|
T Consensus 356 ~p~~~~~~pe~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~klv~d-~~~~~ilG~~~~g~~a~e~i 431 (475)
T PRK06327 356 IPWVIYTSPEIAWVGKTEQQLKAEGV--EYKAGKFPFMANGRALAMG-EPDGFVKIIAD-AKTDEILGVHVIGPNASELI 431 (475)
T ss_pred CCeEEeCCcceEEEeCCHHHHHHcCC--CEEEEEEcccccchhhhcC-CCCeEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 89999999999999999999998764 6777666666555554433 37899999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
+.+++||++++|+++|.+.+++|||++|.+..+++.
T Consensus 432 ~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 467 (475)
T PRK06327 432 AEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALA 467 (475)
T ss_pred HHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999865
No 26
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.4e-33 Score=252.96 Aligned_cols=176 Identities=28% Similarity=0.471 Sum_probs=154.8
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
+++++|++++ ++| |.||++| |+.|+|||+|||+ +.+++++.|.+||+++|.|+.|... ..++..
T Consensus 274 ~l~~~gv~~~-~~g-i~Vd~~~~ts~~~VyA~GD~~------------~~~~la~~A~~~g~~aa~~~~g~~~-~~~~~~ 338 (458)
T PRK06912 274 NLEKAGVQFS-NKG-ISVNEHMQTNVPHIYACGDVI------------GGIQLAHVAFHEGTTAALHASGEDV-KVNYHA 338 (458)
T ss_pred CchhcCceec-CCC-EEeCCCeecCCCCEEEEeecC------------CCcccHHHHHHHHHHHHHHHcCCCC-CCCcCC
Confidence 4678899987 566 9999999 9999999999999 5678999999999999999998643 356778
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+|++||++.++ ++.+...++....++.... .+.|++||++| +++++|||+|++|+++.|+|
T Consensus 339 ~p~~v~~~p~~a~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i 414 (458)
T PRK06912 339 VPRCIYTSPEIASVGLTEKQAREQYG--DIRIGEFPFTANGKALIIG-EQTGKVKVIVE-PKYQEIVGISIIGPRATELI 414 (458)
T ss_pred CCeEEecCchhEEeeCCHHHHHHCCC--CeEEEEEecCcchhHhhcC-CCceEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 89999999999999999999998764 5777666676666655443 37899999999 89999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
+.++++|+.++|+++|.+.+++|||++|.+.++++.
T Consensus 415 ~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 450 (458)
T PRK06912 415 GQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQ 450 (458)
T ss_pred HHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999998865
No 27
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.2e-33 Score=252.28 Aligned_cols=180 Identities=28% Similarity=0.450 Sum_probs=157.8
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCcccc
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNV 83 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~~ 83 (212)
|+++|++++ +|+|.||++| |+.|+|||+|||+ +.+.+++.|.+||+++|.||.|.. ...++..+
T Consensus 279 l~~~gl~~~--~g~i~vd~~~~t~~~~VyAiGD~~------------~~~~~~~~A~~~g~~aa~ni~~~~-~~~~~~~~ 343 (462)
T PRK06416 279 LEELGVKTD--RGFIEVDEQLRTNVPNIYAIGDIV------------GGPMLAHKASAEGIIAAEAIAGNP-HPIDYRGI 343 (462)
T ss_pred chhcCCeec--CCEEeECCCCccCCCCEEEeeecC------------CCcchHHHHHHHHHHHHHHHcCCC-CCCCCCCC
Confidence 678899986 7999999999 9999999999999 467799999999999999999854 34667789
Q ss_pred eeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHHH
Q psy11186 84 ATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQ 163 (212)
Q Consensus 84 ~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i~ 163 (212)
|+++|++|+++++|+|+++|++.+. ++++...++....+..... .+.+++||++| +++++|||+|++|+++.++|+
T Consensus 344 ~~~~~~~~~~a~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~kli~~-~~~~~ilG~~~~g~~a~e~i~ 419 (462)
T PRK06416 344 PAVTYTHPEVASVGLTEAKAKEEGF--DVKVVKFPFAGNGKALALG-ETDGFVKLIFD-KKDGEVLGAHMVGARASELIQ 419 (462)
T ss_pred CeEEECCCceEEEeCCHHHHHhcCC--CeEEEEEecCcChHhHhcC-CCceEEEEEEE-CCCCEEEEEEEECCCHHHHHH
Confidence 9999999999999999999998764 6777776676656554333 47899999999 889999999999999999999
Q ss_pred HHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhhhhcCCCC
Q psy11186 164 GYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDP 205 (212)
Q Consensus 164 ~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~~~~ 205 (212)
.+++||+.++|+++|.+.+++|||++|.+..+++. +.+++
T Consensus 420 ~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~--~~~~~ 459 (462)
T PRK06416 420 EAQLAINWEATPEDLALTIHPHPTLSEALGEAALA--AAGKP 459 (462)
T ss_pred HHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHH--hccCc
Confidence 99999999999999999999999999999998865 54443
No 28
>KOG1335|consensus
Probab=100.00 E-value=1.2e-33 Score=243.83 Aligned_cols=179 Identities=25% Similarity=0.439 Sum_probs=165.2
Q ss_pred ccccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCcc
Q psy11186 3 PAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQ 81 (212)
Q Consensus 3 ~~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~ 81 (212)
++|++.|++.| ++|+|.||++. |..|+||++|||. .+|+|+|.|..||..+...+.|.. ...+|.
T Consensus 319 Lgle~iGi~~D-~r~rv~v~~~f~t~vP~i~~IGDv~------------~gpMLAhkAeeegI~~VE~i~g~~-~hv~yn 384 (506)
T KOG1335|consen 319 LGLEKIGIELD-KRGRVIVNTRFQTKVPHIYAIGDVT------------LGPMLAHKAEEEGIAAVEGIAGGH-GHVDYN 384 (506)
T ss_pred CChhhcccccc-cccceeccccccccCCceEEecccC------------CcchhhhhhhhhchhheeeecccC-cccccC
Confidence 57899999999 89999999999 9999999999999 689999999999999999888754 346787
Q ss_pred cceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHH
Q psy11186 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161 (212)
Q Consensus 82 ~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~ 161 (212)
.+|.+.|+.|+++|||.||+++++.+. .|.+..++|..+.|+..+.+ ..||+|+++| ++|+||||+|++|++|.|+
T Consensus 385 ciP~v~ythPEvawVG~TEeqlkeegi--~y~vgkfpF~aNsRaktn~d-~eg~vKvl~d-~~tdkiLGvHiigp~AgEl 460 (506)
T KOG1335|consen 385 CIPSVVYTHPEVAWVGKTEEQLKEEGI--KYKVGKFPFSANSRAKTNND-TEGFVKVLAD-KETDKILGVHIIGPNAGEL 460 (506)
T ss_pred CCCceeecccceeeeccchhhHHhcCc--ceEeeeccccccchhhccCC-ccceeEEEec-CCCCcEEEEEEecCCHHHH
Confidence 899999999999999999999999875 67777889998888887754 8999999999 9999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhhh
Q psy11186 162 IQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITK 199 (212)
Q Consensus 162 i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~ 199 (212)
|+..++||.-|.+.+|++...++|||+||++++++++-
T Consensus 461 i~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA 498 (506)
T KOG1335|consen 461 IHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAA 498 (506)
T ss_pred HHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999884
No 29
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=8.5e-33 Score=255.42 Aligned_cols=185 Identities=35% Similarity=0.622 Sum_probs=150.8
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCC-----------------------CCC----CCchh
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPL-----------------------FQE----KPELT 56 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~-----------------------~~~----~~~l~ 56 (212)
+++.++.. ++|+|.||++| ||.|+|||+|||+. +++. .++ .++++
T Consensus 343 l~~~~~~~--~~G~I~VDe~lqTs~p~IYA~GDv~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la 415 (561)
T PTZ00058 343 LKALNIKT--PKGYIKVDDNQRTSVKHIYAVGDCCM-----VKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLT 415 (561)
T ss_pred ccccceec--CCCeEEECcCCccCCCCEEEeEeccC-----ccccccccccccccccccccccccccccccccccCcCch
Confidence 45556654 47999999999 99999999999995 1110 111 45789
Q ss_pred HHHHHHHHHHHHHHhCCCCcCCCcccceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccc----cCCCCC
Q psy11186 57 PVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFI----PQRNPQ 132 (212)
Q Consensus 57 ~~A~~~g~~aa~nl~g~~~~~~~~~~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 132 (212)
+.|.+||+++|+||+|......++..+|+++|++|++|+||+||+||++.++.+.+.+...++....+.. +.. .+
T Consensus 416 ~~A~~~g~~aa~ni~g~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 494 (561)
T PTZ00058 416 PVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQ-KE 494 (561)
T ss_pred HHHHHHHHHHHHHHhCCCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccC-CC
Confidence 9999999999999998644346777899999999999999999999998743235666655565443332 222 26
Q ss_pred ceEEEEEEecCCCCeEEEEEEECccHHHHHHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 133 RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 133 ~g~~klv~d~~~~g~ilGa~~vg~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
.+++|++++ +++++|||+|++|++|.|+|+.+++||++++|+++|.+.+++|||++|.+..++..
T Consensus 495 ~g~~Kli~~-~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~ 559 (561)
T PTZ00058 495 KTYLKLVCV-GKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPW 559 (561)
T ss_pred CeEEEEEEE-CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccC
Confidence 799999999 89999999999999999999999999999999999999999999999999888754
No 30
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.6e-32 Score=251.08 Aligned_cols=189 Identities=46% Similarity=0.770 Sum_probs=155.8
Q ss_pred ccccCCeeccCCCceecCCCCCCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCcccce
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVA 84 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~lTs~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~~~ 84 (212)
|+++|++++ ++|++.++++.|+.|+|||+|||+. +.+++++.|.+||+++|+||+|......++..+|
T Consensus 285 l~~~g~~~~-~~G~ii~~~~~Ts~p~IyAiGDv~~-----------~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p 352 (499)
T PTZ00052 285 LNAIGVHVN-KSNKIIAPNDCTNIPNIFAVGDVVE-----------GRPELTPVAIKAGILLARRLFKQSNEFIDYTFIP 352 (499)
T ss_pred chhcCcEEC-CCCCEeeCCCcCCCCCEEEEEEecC-----------CCcccHHHHHHHHHHHHHHHhCCCCCcCccccCC
Confidence 578899998 7888666654699999999999994 5678999999999999999998655557888899
Q ss_pred eEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCC--------------CCCceEEEEEEecC-CCCeEE
Q psy11186 85 TTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQR--------------NPQRCYLKVVCERA-APQKVL 149 (212)
Q Consensus 85 ~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~g~~klv~d~~-~~g~il 149 (212)
+++|++|++++||+||+||++.++.+.+++...++.........+ ..+.||+|++++ + ++++||
T Consensus 353 ~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~-~~~~~~Il 431 (499)
T PTZ00052 353 TTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCV-KSEDNKVV 431 (499)
T ss_pred eEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEe-cCCCCEEE
Confidence 999999999999999999998743235666655554322211100 025899999998 6 489999
Q ss_pred EEEEECccHHHHHHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhhhhcCCCCC
Q psy11186 150 GMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGEDPT 206 (212)
Q Consensus 150 Ga~~vg~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~~~~~ 206 (212)
|+|++|++|.|+|+.++++|++++|+++|.+.+++|||++|.+..+..+.|..+...
T Consensus 432 G~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~~~~~~~~~~~ 488 (499)
T PTZ00052 432 GFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMNLSVTRRSGESFA 488 (499)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhEEEEeeccCCCChh
Confidence 999999999999999999999999999999999999999999999988876655443
No 31
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.7e-32 Score=246.26 Aligned_cols=177 Identities=25% Similarity=0.445 Sum_probs=155.9
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
++++.++..+ +|+|.||++| |+.|+|||+|||+ +.+.+++.|.+||+++|+|+.|.....+++..
T Consensus 287 ~l~~~~~~~~--~g~i~Vd~~l~ts~~~IyAiGD~~------------~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~ 352 (472)
T PRK05976 287 GLENTDIDVE--GGFIQIDDFCQTKERHIYAIGDVI------------GEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAA 352 (472)
T ss_pred CchhcCceec--CCEEEECCCcccCCCCEEEeeecC------------CCcccHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 3566777765 6889999999 9999999999999 56789999999999999999987545567778
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|.++|++|+++++|+|+++|++.+. ++.+...++....++.... .+.|++|+++| +++++|||+|++|+++.++|
T Consensus 353 ~p~~~~~~p~~a~vG~te~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~i 428 (472)
T PRK05976 353 IPACCYTDPEVASVGLTEEEAKEAGY--DVKVGKFPFAANGKALTYG-ESDGFVKVVAD-RDTHDILGVQAVGPHVTELI 428 (472)
T ss_pred CCEEEECcCceEEEeCCHHHHHHcCC--CEEEEEEECCcchhhhhcC-CCceEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 89999999999999999999998864 6777766777666655443 47999999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
+.+++||+.++|+++|.+.+++|||++|.+..+++.
T Consensus 429 ~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 464 (472)
T PRK05976 429 SEFALALELGARLWEVAGTIHPHPTLSEAIQEAALA 464 (472)
T ss_pred HHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999875
No 32
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.6e-32 Score=244.11 Aligned_cols=176 Identities=26% Similarity=0.380 Sum_probs=152.7
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCC-cCCCcc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGT-TQMDYQ 81 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~-~~~~~~ 81 (212)
++++++++++ ++|+|.||++| |+.|+|||+|||+ +.+.+++.|..+|++++.++.|... ...++.
T Consensus 259 ~l~~~~~~~~-~~g~i~vd~~~~t~~~~IyaiGD~~------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 325 (438)
T PRK07251 259 GLENTDIELT-ERGAIKVDDYCQTSVPGVFAVGDVN------------GGPQFTYISLDDFRIVFGYLTGDGSYTLEDRG 325 (438)
T ss_pred CchhcCcEEC-CCCcEEECCCcccCCCCEEEeeecC------------CCcccHhHHHHHHHHHHHHHcCCCCccccccC
Confidence 4667788887 68999999999 9999999999999 6788999999999999999987643 224556
Q ss_pred cceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHH
Q psy11186 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161 (212)
Q Consensus 82 ~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~ 161 (212)
.+|+++|++|+++++|+|+++|++.+. ++.+....+....++.... ...|++|+++| ++|++|||+|++|+++.|+
T Consensus 326 ~~p~~~~~~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~kli~d-~~~~~ilG~~~~g~~a~e~ 401 (438)
T PRK07251 326 NVPTTMFITPPLSQVGLTEKEAKEAGL--PYAVKELLVAAMPRAHVNN-DLRGAFKVVVN-TETKEILGATLFGEGSQEI 401 (438)
T ss_pred CCCEEEECCCceEeeeCCHHHHHhcCC--CeEEEEEECCcchhhhhcC-CCcEEEEEEEE-CCCCEEEEEEEECCCHHHH
Confidence 789999999999999999999998764 5777666666666654333 36899999999 8899999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHH
Q psy11186 162 IQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 196 (212)
Q Consensus 162 i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~ 196 (212)
|+.+++||++++|+++|.+.+++|||++|.+..++
T Consensus 402 i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 402 INLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred HHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 99999999999999999999999999999998875
No 33
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1e-31 Score=242.89 Aligned_cols=178 Identities=30% Similarity=0.498 Sum_probs=157.2
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCccc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQN 82 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~ 82 (212)
.++++|++++ ++|+|.||++| |+.|+|||+|||+ +.+.+++.|.+||+++|.|+.+.....+++..
T Consensus 275 ~~~~~gl~~~-~~g~i~vd~~l~t~~~~IyaiGD~~------------~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 341 (461)
T TIGR01350 275 GLENLGVELD-ERGRIVVDEYMRTNVPGIYAIGDVI------------GGPMLAHVASHEGIVAAENIAGKEPAPIDYDA 341 (461)
T ss_pred CcHhhCceEC-CCCcEeeCCCcccCCCCEEEeeecC------------CCcccHHHHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 4778899998 78999999999 9999999999999 46779999999999999999986543567778
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
.|.+.|++|+++++|+++++|+..+. ++.+.+.++....++.... .+.+++|+++| +++++|||+|++|+++.++|
T Consensus 342 ~~~~~~~~~~~a~vG~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~-~~~g~~kl~~~-~~~~~ilG~~~~g~~a~e~i 417 (461)
T TIGR01350 342 VPSCIYTDPEVASVGLTEEQAKEAGY--DVKIGKFPFAANGKALALG-ETDGFVKIIAD-KKTGEILGAHIIGPHATELI 417 (461)
T ss_pred CCeEEecCCceEEEeCCHHHHHhCCC--CeEEEEEeCccchHHHhcC-CCceEEEEEEE-CCCCEEEEEEEECCCHHHHH
Confidence 89999999999999999999998864 5777766666555544333 47999999999 88999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
+.+++||+.++|+++|.+.+++|||++|.|..+++.
T Consensus 418 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 453 (461)
T TIGR01350 418 SEAVLAMELELTVEELAKTIHPHPTLSEAIKEAALA 453 (461)
T ss_pred HHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999998865
No 34
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.97 E-value=3e-31 Score=239.03 Aligned_cols=183 Identities=18% Similarity=0.290 Sum_probs=149.8
Q ss_pred ccccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCC---CCchhHHHHHHHHHHHHHHhCCCCc-C
Q psy11186 3 PAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQE---KPELTPVAVQAGKLLAARLYGNGTT-Q 77 (212)
Q Consensus 3 ~~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~---~~~l~~~A~~~g~~aa~nl~g~~~~-~ 77 (212)
+.++++|++++ ++|+|.||++| |+.|+|||+|||+.. .+...+ .+++++.|.+||+++|+||.|.... .
T Consensus 244 ~~l~~~gl~~~-~~G~i~Vd~~~~t~~~~IyA~GD~~~~-----~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~ 317 (438)
T PRK13512 244 KFIESSNIKLD-DKGFIPVNDKFETNVPNIYAIGDIITS-----HYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEF 317 (438)
T ss_pred HHHHhcCcccC-CCCcEEECCCcccCCCCEEEeeeeEEe-----eeccCCCceecccchHHHHHHHHHHHHhcCCCcccc
Confidence 35788899998 68999999999 999999999999952 111112 2467889999999999999986432 2
Q ss_pred CCcccceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECcc
Q psy11186 78 MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN 157 (212)
Q Consensus 78 ~~~~~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~ 157 (212)
.++..+|++.|++|++++||+|++||++. ++.+....+.....++. . .+.|++|+++| +++++|||+|++|++
T Consensus 318 ~~~~~~~~~~~~~~~ia~vGlte~~a~~~----~~~~~~~~~~~~~~~~~-~-~~~g~~klv~d-~~~~~ilGa~~~g~~ 390 (438)
T PRK13512 318 KGFLGNNIVKFFDYTFASVGVKPNELKQF----DYKMVEVTQGAHANYYP-G-NSPLHLRVYYD-TSNRKILRAAAVGKE 390 (438)
T ss_pred CCcccceEEEEcCceEEeecCCHHHHccC----CcEEEEEecCCcCCCcC-C-CceEEEEEEEE-CCCCeEEEEEEEccc
Confidence 36678899999999999999999999864 35555444443444443 2 47999999999 889999999999997
Q ss_pred -HHHHHHHHHHHHHCCCCHHHHhh-cccCCCCchhhHHHHHhh
Q psy11186 158 -AGEVIQGYAAAVKCGLTFETLES-TVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 158 -a~~~i~~~~~ai~~~~t~~~l~~-~~~~~P~~~e~~~~~~~~ 198 (212)
+.|+|+.++++|+.|+|+++|.+ .+++||+++..++.+..+
T Consensus 391 ~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~~~~ 433 (438)
T PRK13512 391 GADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMI 433 (438)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCccccHHHHH
Confidence 88999999999999999999999 699999999988877665
No 35
>KOG0405|consensus
Probab=99.97 E-value=2.6e-31 Score=227.10 Aligned_cols=179 Identities=42% Similarity=0.725 Sum_probs=166.2
Q ss_pred ccccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC-CCCcCCCc
Q psy11186 3 PAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG-NGTTQMDY 80 (212)
Q Consensus 3 ~~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g-~~~~~~~~ 80 (212)
++|++.|++++ .+|.|+||+|. ||.|+|||+||+. |+..|+|+|+.+||.+|+.++| ......+|
T Consensus 292 L~le~vGVk~~-~~g~IivDeYq~Tnvp~I~avGDv~------------gk~~LTPVAiaagr~la~rlF~~~~~~kldY 358 (478)
T KOG0405|consen 292 LNLENVGVKTD-KNGAIIVDEYQNTNVPSIWAVGDVT------------GKINLTPVAIAAGRKLANRLFGGGKDTKLDY 358 (478)
T ss_pred ccchhcceeeC-CCCCEEEeccccCCCCceEEecccc------------CcEecchHHHhhhhhHHHHhhcCCCCCcccc
Confidence 67999999999 79999999999 9999999999999 7889999999999999999997 45556899
Q ss_pred ccceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHH
Q psy11186 81 QNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGE 160 (212)
Q Consensus 81 ~~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~ 160 (212)
.++|.++|+.|+++.||+||+||-++|+..++.++...|.++...+..+ ..+.++||++. .++.+++|+|++|+++.|
T Consensus 359 ~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~-k~kt~mKlvc~-~~~eKVvG~hm~G~~s~E 436 (478)
T KOG0405|consen 359 ENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGR-KEKTLMKLVCA-GKSEKVVGVHMCGDDSAE 436 (478)
T ss_pred ccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHhhcC-CcceEEEEEEe-cCCCcEEEEEEecCCcHH
Confidence 9999999999999999999999999999889999999999888777655 47889999999 789999999999999999
Q ss_pred HHHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHH
Q psy11186 161 VIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 196 (212)
Q Consensus 161 ~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~ 196 (212)
+++.++.|+++|+|-.|+.+.+..|||.+|.|-.+.
T Consensus 437 ilQGf~VAvKmGaTKadFD~tVaIHPTSAEElVTmr 472 (478)
T KOG0405|consen 437 ILQGFAVAVKMGATKADFDSTVAIHPTSAEELVTMR 472 (478)
T ss_pred HHhhhhhheecCcchhhhccceeecCCCHHHheecc
Confidence 999999999999999999999999999999886653
No 36
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.97 E-value=7.5e-31 Score=236.16 Aligned_cols=184 Identities=24% Similarity=0.322 Sum_probs=146.3
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCC---CchhHHHHHHHHHHHHHHhCCCCcCCC
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEK---PELTPVAVQAGKLLAARLYGNGTTQMD 79 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~---~~l~~~A~~~g~~aa~nl~g~~~~~~~ 79 (212)
.++++|++++ ++|+|.||++| |+.|+|||+|||+.. .+...++ +++++.|.+||+++|+||.|.......
T Consensus 250 ~l~~~gl~~~-~~g~i~vd~~~~t~~~~IyA~GD~~~~-----~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~ 323 (444)
T PRK09564 250 FLEDTGLKTL-KNGAIIVDEYGETSIENIYAAGDCATI-----YNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKG 323 (444)
T ss_pred HHHhcCcccc-CCCCEEECCCcccCCCCEEEeeeEEEE-----EeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCC
Confidence 4788999987 68999999999 999999999999962 2222232 468899999999999999987543223
Q ss_pred cccceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECcc-H
Q psy11186 80 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-A 158 (212)
Q Consensus 80 ~~~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~-a 158 (212)
....+.+.|++|++++||+|++||++.+. ++.+..........++. +.+.+|+|+++| +++++|||+|++|++ +
T Consensus 324 ~~~~~~~~~~~~~~a~vG~t~~~a~~~g~--~~~~~~~~~~~~~~~~~--~~~~~~~klv~~-~~~~~ilG~~~~g~~~~ 398 (444)
T PRK09564 324 TLGSACIKVLDLEAARTGLTEEEAKKLGI--DYKTVFIKDKNHTNYYP--GQEDLYVKLIYE-ADTKVILGGQIIGKKGA 398 (444)
T ss_pred cccceEEEECCEEEEEecCCHHHHHHCCC--CeEEEEEecCCCCCcCC--CCceEEEEEEEE-CCCCeEEeEEEEcCccH
Confidence 33344567899999999999999998754 56665544332222222 247899999999 889999999999997 8
Q ss_pred HHHHHHHHHHHHCCCCHHHHhhcccCC-CCchhhHHHHHhh
Q psy11186 159 GEVIQGYAAAVKCGLTFETLESTVGIH-PTLAEEFTRVTIT 198 (212)
Q Consensus 159 ~~~i~~~~~ai~~~~t~~~l~~~~~~~-P~~~e~~~~~~~~ 198 (212)
.++++.++++|++++|++++.+..++| |+++|.++.+..+
T Consensus 399 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 439 (444)
T PRK09564 399 VLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTWDALNVA 439 (444)
T ss_pred HHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCcCHHHHH
Confidence 899999999999999999999955555 9999999887765
No 37
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.97 E-value=4.6e-30 Score=230.25 Aligned_cols=183 Identities=23% Similarity=0.331 Sum_probs=150.2
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCC---CchhHHHHHHHHHHHHHHhCCCCcCCC
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEK---PELTPVAVQAGKLLAARLYGNGTTQMD 79 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~---~~l~~~A~~~g~~aa~nl~g~~~~~~~ 79 (212)
.++++|++++ ++|+|.||++| |+.|+|||+|||+.. .+..+++ +++++.|.+||+++|+||.|.......
T Consensus 237 ~l~~~gl~~~-~~G~i~vd~~~~t~~~~Vya~GD~~~~-----~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~ 310 (427)
T TIGR03385 237 LAKDSGLKLG-ETGAIWVNEKFQTSVPNIYAAGDVAES-----HNIITKKPAWVPLAWGANKMGRIAGENIAGNDIEFKG 310 (427)
T ss_pred HHHhcCcccC-CCCCEEECCCcEeCCCCEEEeeeeEEe-----eeccCCCceeeechHHHHHHHHHHHHHhcCCCCCCCC
Confidence 4678899998 78999999999 999999999999962 2222222 358899999999999999987543334
Q ss_pred cccceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECcc-H
Q psy11186 80 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-A 158 (212)
Q Consensus 80 ~~~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~-a 158 (212)
+..+++++|++|+++++|+|+.+|++.+. ++.+....+....+++.. .+.|++|++++ +++++|||+|++|++ +
T Consensus 311 ~~~~~~~~~~~~~~a~vG~t~~~a~~~g~--~~~~~~~~~~~~~~~~~~--~~~g~~kli~~-~~~~~ilG~~~~g~~~a 385 (427)
T TIGR03385 311 VLGTNITKFFDLTIASTGVTENEAKKLNI--DYKTVFVKAKTHANYYPG--NSPLHLKLIYE-KDTRRILGAQAVGKEGA 385 (427)
T ss_pred cceeeEEEEcCeEEEEecCCHHHHHHCCC--CeEEEEEecCCCCCcCCC--CceEEEEEEEE-CCCCeEEEEEEEccccH
Confidence 44678899999999999999999998753 566665555554454432 47899999999 889999999999999 9
Q ss_pred HHHHHHHHHHHHCCCCHHHHhh-cccCCCCchhhHHHHHh
Q psy11186 159 GEVIQGYAAAVKCGLTFETLES-TVGIHPTLAEEFTRVTI 197 (212)
Q Consensus 159 ~~~i~~~~~ai~~~~t~~~l~~-~~~~~P~~~e~~~~~~~ 197 (212)
.|+|+.++++|++++|+++|.+ .+.+||+++..+..++.
T Consensus 386 ~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~~~~~~ 425 (427)
T TIGR03385 386 DKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVWDPLNM 425 (427)
T ss_pred HHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCccchHHh
Confidence 9999999999999999999999 66899999988766654
No 38
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=99.92 E-value=1.2e-24 Score=161.12 Aligned_cols=110 Identities=31% Similarity=0.472 Sum_probs=99.8
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
+|+++|++|++++||+|+++|++.++ ++++.+.++....+.....+ +.+++|+++| +++++|||+|++|+++.|+|
T Consensus 1 vP~~vft~p~ia~vGlte~~a~~~g~--~~~~~~~~~~~~~~~~~~~~-~~g~~Kli~d-~~t~~IlGa~~vg~~a~e~I 76 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEEARKQGI--DYEVVTVPFKSNDRARYYPE-TEGFVKLIFD-KKTGRILGAQIVGPNASELI 76 (110)
T ss_dssp CEEEEESSSEEEEEES-HHHHHHHTS--GEEEEEEEEGGEHHHHHTTT-TEEEEEEEEE-TTTTBEEEEEEEETTHHHHH
T ss_pred CCEEEECCCceEEEccCHHHHHhccC--ceeeeeecccccchhcccCC-cceeeEEEEE-eeccceeeeeeecCchHHHH
Confidence 58999999999999999999999875 58888888888777766554 8999999999 89999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHH
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 196 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~ 196 (212)
+.++++|++++|++++.+.+++|||++|.+..++
T Consensus 77 ~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 77 NELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp HHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 9999999999999999999999999999998874
No 39
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.74 E-value=2.1e-17 Score=159.41 Aligned_cols=157 Identities=15% Similarity=0.319 Sum_probs=108.2
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCcccc
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNV 83 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~~ 83 (212)
++++|++++ ++|+|.||++| ||.|+|||+|||+.+. +. ...+++.|.+||+++|+||+|.... ++....
T Consensus 250 ~~~~Gl~~~-~~G~I~VD~~l~Ts~p~IYAiGD~a~~~-----~~---~~gl~~~a~~~a~vaa~~i~g~~~~-~~g~~~ 319 (847)
T PRK14989 250 ATQCGLAVA-PRGGIVINDSCQTSDPDIYAIGECASWN-----NR---VFGLVAPGYKMAQVAVDHLLGSENA-FEGADL 319 (847)
T ss_pred HhhcCccCC-CCCcEEECCCCcCCCCCEEEeecceeEc-----Cc---ccccHHHHHHHHHHHHHHhcCCCcC-CCCccc
Confidence 568899998 78999999999 9999999999999622 11 2348899999999999999987543 333333
Q ss_pred e-eEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccH--HH
Q psy11186 84 A-TTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNA--GE 160 (212)
Q Consensus 84 ~-~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a--~~ 160 (212)
+ ...+.+.+++++|..... ....... .+ . . ....+|.|++++ +++++|||++++|+.+ .+
T Consensus 320 ~~~lk~~G~~v~s~G~~~~~------~~~~~~~--~~------~-~-~~~~~y~Klv~~-~~~~~LlGa~lvGd~~~~~~ 382 (847)
T PRK14989 320 SAKLKLLGVDVGGIGDAHGR------TPGARSY--VY------L-D-ESKEIYKRLIVS-EDNKTLLGAVLVGDTSDYGN 382 (847)
T ss_pred ceEEEECCcceEecccccCC------CCCceeE--EE------E-c-CCCCEEEEEEEE-CCCCEEEEEEEECCHHHHHH
Confidence 3 556678899999932110 0011111 01 1 1 135789999999 8899999999999954 56
Q ss_pred HHHHHHHHHHCCCCHHHHhhcccC---CCCc
Q psy11186 161 VIQGYAAAVKCGLTFETLESTVGI---HPTL 188 (212)
Q Consensus 161 ~i~~~~~ai~~~~t~~~l~~~~~~---~P~~ 188 (212)
+++.+...+..+.+.+++....+. ||++
T Consensus 383 l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 413 (847)
T PRK14989 383 LLQLVLNAIELPENPDSLILPAHAGSGKPSI 413 (847)
T ss_pred HHHHHHcCCCCccchhheecCCCCCCCCCcc
Confidence 666665555555555555553332 6665
No 40
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.55 E-value=1e-13 Score=123.54 Aligned_cols=136 Identities=18% Similarity=0.075 Sum_probs=94.3
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCC---CchhHHHHHHHHHHHHHHhCCCCcCCCc
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEK---PELTPVAVQAGKLLAARLYGNGTTQMDY 80 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~---~~l~~~A~~~g~~aa~nl~g~~~~~~~~ 80 (212)
++++|++.+ +| |+||++| |+.|+|||+|||+.+ .+. +|. .++|+.|.+||++||+||+|.... ...
T Consensus 246 ~~~~gl~~~--~g-i~vd~~~~ts~~~IyA~GD~a~~-----~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~-~~~ 315 (396)
T PRK09754 246 AREANLDTA--NG-IVIDEACRTCDPAIFAGGDVAIT-----RLD-NGALHRCESWENANNQAQIAAAAMLGLPLP-LLP 315 (396)
T ss_pred HHhcCCCcC--CC-EEECCCCccCCCCEEEccceEee-----eCC-CCCEEEECcHHHHHHHHHHHHHHhcCCCCC-CCC
Confidence 467788764 45 9999999 999999999999962 222 343 368899999999999999987532 333
Q ss_pred ccceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHH
Q psy11186 81 QNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGE 160 (212)
Q Consensus 81 ~~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~ 160 (212)
.+..|+..++..+.++|.... +.+... .......++.++++ +++|+|+..+|. ..
T Consensus 316 ~p~~~~~~~~~~~~~~G~~~~--------~~~~~~------------~~~~~~~~~~~~~~---~~~l~g~~~~~~--~~ 370 (396)
T PRK09754 316 PPWFWSDQYSDNLQFIGDMRG--------DDWLCR------------GNPETQKAIWFNLQ---NGVLIGAVTLNQ--GR 370 (396)
T ss_pred CCceEEEeCCccEEEeeCCCC--------CEEEEe------------cCCCCceEEEEEee---CCEEEEEEEECC--HH
Confidence 334466777899999997542 111111 11113335544444 789999999998 34
Q ss_pred HHHHHHHHHHCCCCH
Q psy11186 161 VIQGYAAAVKCGLTF 175 (212)
Q Consensus 161 ~i~~~~~ai~~~~t~ 175 (212)
....+..+|..+.++
T Consensus 371 ~~~~~~~~~~~~~~~ 385 (396)
T PRK09754 371 EIRPIRKWIQSGKTF 385 (396)
T ss_pred HHHHHHHHHHCCCCC
Confidence 556677788887664
No 41
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.48 E-value=3.4e-13 Score=129.82 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=100.2
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCC-Cccc
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQM-DYQN 82 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~-~~~~ 82 (212)
++++|++++ |+|+||++| ||.|+|||+|||+.++ +. ...++..|.+||+++|.||+|.....+ ....
T Consensus 243 a~~~gl~~~---ggI~Vd~~~~Ts~p~IyA~GD~a~~~-----~~---~~gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~ 311 (785)
T TIGR02374 243 AVSAGIKVN---RGIIVNDSMQTSDPDIYAVGECAEHN-----GR---VYGLVAPLYEQAKVLADHICGVECEEYEGSDL 311 (785)
T ss_pred HHhcCCccC---CCEEECCCcccCCCCEEEeeecceeC-----Cc---ccccHHHHHHHHHHHHHHhcCCCCcCCCCCcc
Confidence 457788875 459999999 9999999999999632 11 124778899999999999998762222 2222
Q ss_pred ceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHH
Q psy11186 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVI 162 (212)
Q Consensus 83 ~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i 162 (212)
.....+.+.+++++|...... +.... .+. .. ....+.|++++ +++|+|++++|+. ...
T Consensus 312 ~~~lk~~g~~v~s~G~~~~~~-------~~~~~--~~~-------d~-~~~~y~kl~~~---~~rLlGavlvgd~--~~~ 369 (785)
T TIGR02374 312 SAKLKLLGVDVWSAGDAQETE-------RTTSI--KIY-------DE-QKGIYKKLVLS---DDKLLGAVLFGDT--SDY 369 (785)
T ss_pred ceEEEECCcceEecccCCCCC-------CcEEE--EEE-------cC-CCCEEEEEEEE---CCEEEEEEEECCH--HHH
Confidence 335567789999999765321 12221 111 11 24678999998 5789999999984 344
Q ss_pred HHHHHHHHCCCCHHHHhhcccC
Q psy11186 163 QGYAAAVKCGLTFETLESTVGI 184 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~ 184 (212)
..+..++..+..+.+....++.
T Consensus 370 ~~L~~li~~~~~l~~~~~ll~~ 391 (785)
T TIGR02374 370 GRLLDMVLKQADISEDPAIIKP 391 (785)
T ss_pred HHHHHHHHcCCCCCcChhhhcC
Confidence 6677778888766554443333
No 42
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.48 E-value=2.8e-13 Score=119.83 Aligned_cols=123 Identities=19% Similarity=0.138 Sum_probs=83.8
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCcccc
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNV 83 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~~ 83 (212)
++++|++++ +| |+||++| |+.|+|||+|||+++.+ .....+..|.+||+++|+||.|...........
T Consensus 244 ~~~~gl~~~--~g-i~vd~~l~ts~~~VyA~GD~a~~~~--------~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~ 312 (377)
T PRK04965 244 ARRAGLAVN--RG-IVVDSYLQTSAPDIYALGDCAEING--------QVLPFLQPIQLSAMALAKNLLGQNTPLKLPAML 312 (377)
T ss_pred HHHCCCCcC--CC-EEECCCcccCCCCEEEeeecEeECC--------ceeehHHHHHHHHHHHHHHhcCCCcccccCCcc
Confidence 567899886 67 9999999 99999999999996321 112356678999999999999976432222223
Q ss_pred eeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHH
Q psy11186 84 ATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGE 160 (212)
Q Consensus 84 ~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~ 160 (212)
+...+.+.++.++|....+ .....+ .. .....+.|++++ +|+|+|+.++|+.+..
T Consensus 313 ~~~~~~~~~~~~~g~~~~~-------~~~~~~-----------~~-~~~~~~~~~~~~---~~~l~g~~~~g~~~~~ 367 (377)
T PRK04965 313 VKVKTPELPLQLAGETQRQ-------DLRWQI-----------NA-ESQGMVAKGVDE---AGQLRAFVVSEDRMKE 367 (377)
T ss_pred EEEecCceeeEECCCCCCC-------CceEEE-----------Ee-CCCCeEEEEEcc---CCcEEEEEEEChhHHH
Confidence 4556778899999976431 111111 01 113345566655 7999999999997544
No 43
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.29 E-value=8.8e-12 Score=116.17 Aligned_cols=147 Identities=17% Similarity=0.245 Sum_probs=102.3
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCcccc
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNV 83 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~~ 83 (212)
..++||.++ +| |.||++| ||+|||||+|+|++.. .. -+.+...+..|++++|+|++|.... .|...
T Consensus 248 a~~aGlavn--rG-Ivvnd~mqTsdpdIYAvGEcae~~-----g~---~yGLVaP~yeq~~v~a~hl~~~~~~--~y~gs 314 (793)
T COG1251 248 AKEAGLAVN--RG-IVVNDYMQTSDPDIYAVGECAEHR-----GK---VYGLVAPLYEQAKVLADHLCGGEAE--AYEGS 314 (793)
T ss_pred HHhcCcCcC--CC-eeecccccccCCCeeehhhHHHhc-----Cc---cceehhHHHHHHHHHHHHhccCccc--ccccc
Confidence 457899997 67 9999999 9999999999999732 22 2568899999999999999987543 23332
Q ss_pred ---eeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHH
Q psy11186 84 ---ATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGE 160 (212)
Q Consensus 84 ---~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~ 160 (212)
+....++.++.+.|--. +. ++-+.+. +. . .....+.|+++. +++|+|+.++|+.+..
T Consensus 315 v~stkLKv~Gvdl~S~GD~~-e~------~~~~~iv--~~-------D-~~~~iYKrlvL~---dd~IvgavL~GDt~d~ 374 (793)
T COG1251 315 VTSTKLKVSGVDVFSAGDFQ-ET------EGAESIV--FR-------D-EQRGIYKKLVLK---DDKIVGAVLYGDTSDG 374 (793)
T ss_pred cchhhhcccccceeeccchh-hc------CCCceEE--Ee-------c-ccccceeEEEEe---CCeEEEEEEEeecccc
Confidence 23344456777777443 11 1222221 11 1 123556778776 6799999999996432
Q ss_pred HHHHHHHHHHCCCCHHHHhh-cccCCC
Q psy11186 161 VIQGYAAAVKCGLTFETLES-TVGIHP 186 (212)
Q Consensus 161 ~i~~~~~ai~~~~t~~~l~~-~~~~~P 186 (212)
+.+-.+|..+.+++++.+ .++++-
T Consensus 375 --~~l~~li~~~~~~se~r~~li~~~~ 399 (793)
T COG1251 375 --GWLLDLILKGADISEIRDTLILPQG 399 (793)
T ss_pred --hHHHHHHhcCCCccccchhhccccc
Confidence 557778899999999988 555543
No 44
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.92 E-value=4.3e-09 Score=94.78 Aligned_cols=61 Identities=31% Similarity=0.403 Sum_probs=50.2
Q ss_pred cccccCCeeccCCCceecCCCC--CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ--TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l--Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
.++++|++++ ++|+|.||++| |+.|+|||+|||+.... . ..+..++.|.+||+++|+||.+
T Consensus 283 ~~~~~~l~~~-~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~-----~--~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 283 LTKQLKVDKT-SRGRISVDDHLRVKPIPNVFALGDCAANEE-----R--PLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred hhhhcCCccc-CCCcEEeCCCcccCCCCCEEEEeccccCCC-----C--CCCCchHHHHHHHHHHHHHHHH
Confidence 4677889888 78999999999 69999999999996321 0 2356788999999999999974
No 45
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.91 E-value=4.2e-09 Score=93.95 Aligned_cols=74 Identities=19% Similarity=0.369 Sum_probs=56.3
Q ss_pred Cccccc-cCCeeccCCCceecCCCC--CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh----CCC
Q psy11186 2 PPAVSN-AGVKVIPENAKIDSDNEQ--TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY----GNG 74 (212)
Q Consensus 2 ~~~l~~-~gl~~~~~~G~I~Vd~~l--Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~----g~~ 74 (212)
|..+++ +|++.+ ++|+++||++| .++|+|||+|||+.+. +. ...|+.++.|.+||+++|+|+. |++
T Consensus 263 ~~~~~~l~~~e~d-r~Grl~V~~~L~~~~~~~IFa~GD~A~~~-----~~-~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~ 335 (405)
T COG1252 263 SPLLKDLSGLETD-RRGRLVVNPTLQVPGHPDIFAAGDCAAVI-----DP-RPVPPTAQAAHQQGEYAAKNIKARLKGKP 335 (405)
T ss_pred ChhhhhcChhhhc-cCCCEEeCCCcccCCCCCeEEEeccccCC-----CC-CCCCChhHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666 588888 78999999999 7999999999999732 22 1247889999999999999986 434
Q ss_pred CcCCCccc
Q psy11186 75 TTQMDYQN 82 (212)
Q Consensus 75 ~~~~~~~~ 82 (212)
.+++.|..
T Consensus 336 l~~f~y~~ 343 (405)
T COG1252 336 LKPFKYKD 343 (405)
T ss_pred CCCCcccc
Confidence 34444444
No 46
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.86 E-value=2.7e-08 Score=87.66 Aligned_cols=156 Identities=20% Similarity=0.149 Sum_probs=104.2
Q ss_pred CCCceecCCCC-CC-CCCeEEcCccCCCCCCCCCCCC---CCCCchhHHHHHHHHHHHHHHhCCCCcCCCcccceeEEEc
Q psy11186 15 ENAKIDSDNEQ-TN-IPNVFAVGDVLHFSPFPVLPLF---QEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFT 89 (212)
Q Consensus 15 ~~G~I~Vd~~l-Ts-~p~IyA~GD~a~~~~~~~~~~~---~~~~~l~~~A~~~g~~aa~nl~g~~~~~~~~~~~~~~~~~ 89 (212)
.+|.|.||+++ |+ .++|||+|||+... ... .+...+++.|..++++++.++.+. ..........+....
T Consensus 252 ~~g~i~v~~~~~~~~~~~v~a~GD~~~~~-----~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~ 325 (415)
T COG0446 252 AGGAVLVDERGGTSKDPDVYAAGDVAEIP-----AAETGKGGRIALWAIAVAAGRIAAENIAGA-LRIPGLLGTVISDVG 325 (415)
T ss_pred cCCCEEEccccccCCCCCEEeccceEeee-----cccCCceeeeechhhHhhhhHHHHHHhccc-cccccccCceEEEEc
Confidence 57889999999 97 99999999999732 222 123467889999999999999876 322222233445666
Q ss_pred CCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHHHHHHHHH
Q psy11186 90 PLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169 (212)
Q Consensus 90 ~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i~~~~~ai 169 (212)
+.....+|+++. ..... + ...........+............|++++ .++++++|++. -. ....+..+..++
T Consensus 326 ~~~~~~~g~~~~--~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~ 397 (415)
T COG0446 326 DLCAASTGLTEG--KERGI--D-VVLVVSGGKDPRAHLYPGAELVGIKLVGD-ADTGRILGGQE-LE-VLKRIGALALAI 397 (415)
T ss_pred CeEEEEecCCcc--cccce--e-eeEEEeccCcccccccCCCCeEEEEEEEc-Ccccceehhhh-HH-HHhhhhhhhhhh
Confidence 788999999987 22211 1 11111222211222111224457888888 78999999999 33 567888899999
Q ss_pred HCCCCHHHHhh-cccC
Q psy11186 170 KCGLTFETLES-TVGI 184 (212)
Q Consensus 170 ~~~~t~~~l~~-~~~~ 184 (212)
..+.++.++.. .+.+
T Consensus 398 ~~~~~~~~~~~~~~~~ 413 (415)
T COG0446 398 GLGDTVAELDALDAIY 413 (415)
T ss_pred hhcCchhhhhhccccc
Confidence 99999888776 4443
No 47
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.71 E-value=1.8e-08 Score=91.47 Aligned_cols=55 Identities=31% Similarity=0.386 Sum_probs=49.0
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.++++|++++ ++|+|.||++| ||.|+|||+|||+ +.+.++..|+.+|+.||.+|.
T Consensus 391 ~l~~~gl~~~-~~G~i~vd~~~~Ts~~~VfA~GD~~------------~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 391 MAETTRLKTS-ERGTIVVDEDQRTSIPGVFAGGDII------------LGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred hhhccCcccC-CCCeEEeCCCCccCCCCEEEecCCC------------CCcHHHHHHHHHHHHHHHHHH
Confidence 4667899998 78999999999 9999999999999 456788999999999999985
No 48
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.66 E-value=2.9e-08 Score=87.18 Aligned_cols=60 Identities=27% Similarity=0.397 Sum_probs=48.4
Q ss_pred cccccCCeeccCCCceecCCCC-C-CCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-T-NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-T-s~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.+.+.|++++ ++|+|.||++| | +.|+|||+|||+.+. +. ..+...+.|.+||+++|+||.
T Consensus 246 ~l~~~gl~~~-~~g~i~vd~~l~~~~~~~Iya~GD~~~~~-----~~--~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 246 WLAESGLPLD-EDGFLRVDPTLQSLSHPHVFAAGDCAVIT-----DA--PRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred HHHHcCCCcC-CCCeEEECCccccCCCCCEEEeeeeeecC-----CC--CCCCchHHHHHhHHHHHHHHH
Confidence 4666788887 68999999999 6 999999999999632 11 124567789999999999986
No 49
>KOG1336|consensus
Probab=98.51 E-value=6.7e-07 Score=80.42 Aligned_cols=143 Identities=20% Similarity=0.218 Sum_probs=87.1
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHH--HHhCCCCcCCCcc
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAA--RLYGNGTTQMDYQ 81 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~--nl~g~~~~~~~~~ 81 (212)
++. |..++ .+|+|.||++| |+.|+|||+|||++|+=. .++... +-..+..|+.+|+.+.. ++..... .++.
T Consensus 318 ~~~-g~~~~-~~G~i~V~~~f~t~~~~VyAiGDva~fp~~-~~~~~~-~v~H~~~A~~~g~~av~ai~~~~~~~--~~~l 391 (478)
T KOG1336|consen 318 LEK-GILLD-SKGGIKVDEFFQTSVPNVYAIGDVATFPLK-GYGEDR-RVEHVDHARASGRQAVKAIKMAPQDA--YDYL 391 (478)
T ss_pred ccc-cceec-ccCCEeehhceeeccCCcccccceeecccc-cccccc-cchHHHHHHHHHHhhhhhhhccCccc--cccc
Confidence 444 77788 79999999999 999999999999986411 233322 23566679999995444 4443322 3344
Q ss_pred cceeEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHH
Q psy11186 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161 (212)
Q Consensus 82 ~~~~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~ 161 (212)
+.-++.+++..+-+.|.... +.+... .. ....|+..+++ +..+|+.+-+.. .+.
T Consensus 392 Pyf~t~~f~~~~~~~G~g~~--------~~v~~G------------~~-e~~~f~ay~~k----~~~v~a~~~~g~-~~~ 445 (478)
T KOG1336|consen 392 PYFYTRFFSLSWRFAGDGVG--------DVVLFG------------DL-EPGSFGAYWIK----GDKVGAVAEGGR-DEE 445 (478)
T ss_pred chHHHHHhhhhccccCcCcc--------ceeeec------------cc-ccccceeeEee----ccEEEEEeccCC-ChH
Confidence 43344444544444444311 011110 01 12335555543 667776665543 588
Q ss_pred HHHHHHHHHCCCCHHHHh
Q psy11186 162 IQGYAAAVKCGLTFETLE 179 (212)
Q Consensus 162 i~~~~~ai~~~~t~~~l~ 179 (212)
.+.++-.++++..++.+.
T Consensus 446 ~~~~a~l~~~~~~v~~~~ 463 (478)
T KOG1336|consen 446 VSQFAKLARQGPEVTSLK 463 (478)
T ss_pred HHHHHHHHhcCCcchhhh
Confidence 899999999998887644
No 50
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.50 E-value=1.9e-07 Score=82.07 Aligned_cols=52 Identities=27% Similarity=0.396 Sum_probs=46.3
Q ss_pred cCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 8 AGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 8 ~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
+|++++ ++|+|.||+++ |+.|+|||+|||+ +.+..++.|..+|+.+|.++..
T Consensus 295 ~g~~~~-~~g~i~vd~~~~t~~~~vyaiGD~~------------~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 295 LGIELN-RKGEIVVDEKHMTSREGVFAAGDVV------------TGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred cCceec-CCCcEeeCCCcccCCCCEEEEcccc------------cCcchHHHHHHHHHHHHHHHHH
Confidence 788888 67899999999 9999999999999 4567889999999999999853
No 51
>PRK12831 putative oxidoreductase; Provisional
Probab=98.48 E-value=2e-07 Score=85.09 Aligned_cols=51 Identities=31% Similarity=0.363 Sum_probs=45.6
Q ss_pred cCCeeccCCCceecCCC-C-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 8 AGVKVIPENAKIDSDNE-Q-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 8 ~gl~~~~~~G~I~Vd~~-l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.|++++ ++|+|.||++ + ||.|+|||+|||+ .++.++..|..+|+.||.+|.
T Consensus 405 ~gl~~~-~~G~i~vd~~~~~Ts~pgVfAaGD~~------------~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 405 KGLKIN-KRGCIVADEETGLTSKEGVFAGGDAV------------TGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred CCceEC-CCCcEEECCCCCccCCCCEEEeCCCC------------CCchHHHHHHHHHHHHHHHHH
Confidence 689988 6899999998 8 9999999999999 356688999999999999885
No 52
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.48 E-value=1.2e-07 Score=80.35 Aligned_cols=54 Identities=26% Similarity=0.307 Sum_probs=45.4
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
++.+ ++++ ++|+|.||+++ |+.|+|||+|||+. -.+..+..|..||+.||.++.
T Consensus 243 l~~~-~~~~-~~g~i~v~~~~~t~~~~vya~GD~~~-----------~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 243 LKGL-LELD-EGGYIVTDEGMRTSVPGVFAAGDVRD-----------KGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred HHHh-heec-CCCcEEECCCCccCCCCEEEeecccC-----------cchhhhhhhhhhHHHHHHHHH
Confidence 4444 6677 67999999999 99999999999993 145678899999999999985
No 53
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.48 E-value=2e-07 Score=85.13 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=47.8
Q ss_pred cccccCCeeccCCCceecC-CCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 4 AVSNAGVKVIPENAKIDSD-NEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd-~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.++++|++++ ++|+|+|| ++| |+.|+|||+|||+ +.+.++..|..+|+.||.+|.
T Consensus 405 l~~~~gl~~~-~~g~i~vd~~~~~Ts~~gVfa~GD~~------------~g~~~~~~Av~~G~~AA~~i~ 461 (471)
T PRK12810 405 LLAQFGVELD-ERGRVAAPDNAYQTSNPKVFAAGDMR------------RGQSLVVWAIAEGRQAARAID 461 (471)
T ss_pred hccccCcccC-CCCCEEeCCCcccCCCCCEEEccccC------------CCchhHHHHHHHHHHHHHHHH
Confidence 4677889988 78999998 789 9999999999999 345678899999999999885
No 54
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.44 E-value=2.5e-07 Score=90.73 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=50.6
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCC
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNG 74 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~ 74 (212)
.++++|++++ ++|+|.||+++ |+.|+|||+|||+ ..+..+..|+.+|+.||.||.+..
T Consensus 783 lle~~GL~ld-~~G~I~VDetlqTs~pgVFAaGD~a------------~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 783 LLKANGIPLD-KKGWPVVDANGETSLTNVYMIGDVQ------------RGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred HHHhcCcccc-CCCCEEeCCCcccCCCCEEEEeccc------------cCchHHHHHHHHHHHHHHHHhhhc
Confidence 3567899888 78999999999 9999999999999 356788899999999999998643
No 55
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.43 E-value=1.9e-07 Score=86.99 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=44.7
Q ss_pred cccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 6 SNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 6 ~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.+.+++++ ++|+|.||++| ||.|+|||+|||+. ..+..+..|..||++||.++.
T Consensus 251 ~~~~l~l~-~~G~I~vd~~~~Ts~p~IyAaGDv~~-----------~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 251 FKGVVELD-KRGYIPTNEDMETNVPGVYAAGDLRP-----------KELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred HhhhcccC-CCCeEEeCCccccCCCCEEEceeccC-----------CCcchheeHHhhHHHHHHHHH
Confidence 34467887 68999999999 99999999999983 334456789999999999984
No 56
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.42 E-value=3.7e-07 Score=86.66 Aligned_cols=56 Identities=27% Similarity=0.363 Sum_probs=48.5
Q ss_pred cccccCCeeccCCCceecCC----CC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 4 AVSNAGVKVIPENAKIDSDN----EQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~----~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
.+++.|++++ ++|.|+||+ ++ ||.|+|||+|||+ ..+.++..|+.+|+.||.+|..
T Consensus 589 ~~~~~gl~~~-~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~------------~g~~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 589 WLESHGVTVD-KWGRIIADVESQYRYQTSNPKIFAGGDAV------------RGADLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred cccccCCcCC-CCCCEEeCCCcccCcccCCCCEEEcCCcC------------CCCcHHHHHHHHHHHHHHHHHH
Confidence 5677899998 789999986 47 9999999999999 3567889999999999999853
No 57
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.41 E-value=3.9e-07 Score=82.88 Aligned_cols=52 Identities=29% Similarity=0.378 Sum_probs=45.4
Q ss_pred ccCCeeccCCCceecCC-CC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 7 NAGVKVIPENAKIDSDN-EQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 7 ~~gl~~~~~~G~I~Vd~-~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
..|++++ ++|+|+||+ ++ |+.|+|||+|||+ +.+.++..|..+|+.||.+|.
T Consensus 395 ~~gl~~~-~~g~i~vd~~~~~Ts~~~VfA~GD~~------------~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 395 TPGLELN-RWGTIIADDETGRTSLPGVFAGGDIV------------TGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred ccCccCC-CCCCEEeCCCCCccCCCCEEEeCCcC------------CCchHHHHHHHHHHHHHHHHH
Confidence 5678888 789999999 77 9999999999999 345688899999999999885
No 58
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.39 E-value=4.6e-07 Score=85.97 Aligned_cols=55 Identities=29% Similarity=0.403 Sum_probs=47.4
Q ss_pred cccccCCeeccCCCceecCCC-C-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 4 AVSNAGVKVIPENAKIDSDNE-Q-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~-l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.+++.|++++ ++|+|.||++ + ||.|+|||+|||+. .+.++..|..+|+.||.+|.
T Consensus 441 ll~~~gl~~~-~~G~I~vd~~~~~Ts~pgVfA~GDv~~------------g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 441 IAEAAGIGTS-RNGTVKVDPETLQTSVAGVFAGGDCVT------------GADIAINAVEQGKRAAHAID 497 (652)
T ss_pred cccccCcccc-CCCcEeeCCCCCcCCCCCEEEcCCcCC------------CchHHHHHHHHHHHHHHHHH
Confidence 4567789988 6899999985 7 99999999999993 56688899999999999875
No 59
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.39 E-value=5.1e-07 Score=82.48 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=47.9
Q ss_pred cccccCCeeccCCCceecC----CCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 4 AVSNAGVKVIPENAKIDSD----NEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd----~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.++++|++++ ++|+|+|| +++ |+.|+|||+|||+ +.+.++..|..+|+.||.+|.
T Consensus 403 ~~~~~gl~~~-~~g~i~vd~~~~~~~~T~~~gVfa~GD~~------------~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 403 WLAGHGITLD-SWGRIITGDVSYLPYQTTNPKIFAGGDAV------------RGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred cccccCccCC-CCCCEEeCCccccCccCCCCCEEEECCcC------------CCccHHHHHHHHHHHHHHHHH
Confidence 4667889988 78999999 678 9999999999999 355678899999999999985
No 60
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.35 E-value=6.4e-07 Score=88.12 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=50.4
Q ss_pred cccccCCeeccCCCceecCCC-C-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCC
Q psy11186 4 AVSNAGVKVIPENAKIDSDNE-Q-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNG 74 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~-l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~ 74 (212)
.++++|++++ ++|+|.||++ + |+.|+|||+|||+ ..|..+..|+.+|+.||.+|++..
T Consensus 780 lle~~GL~ld-~~G~I~VD~~~~~Ts~pgVFAaGD~a------------~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 780 LLQKNGIPLD-EYGWPVVNQATGETNITNVFVIGDAN------------RGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred HHHhcCcccC-CCCCEEeCCCCCccCCCCEEEEeCcC------------CCccHHHHHHHHHHHHHHHHhccc
Confidence 3567899988 7899999997 7 9999999999999 356788899999999999998643
No 61
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.33 E-value=8e-07 Score=85.64 Aligned_cols=51 Identities=27% Similarity=0.431 Sum_probs=45.7
Q ss_pred cCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 8 AGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 8 ~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.|++++ ++|+|.||+++ ||.|+|||+|||+ +.+.++..|..+|+.||.+|.
T Consensus 695 ~gl~~~-~~G~i~vd~~~~Ts~~gVfA~GD~~------------~g~~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 695 PGLELN-RKGTIVVDEEMQSSIPGIYAGGDIV------------RGGATVILAMGDGKRAAAAID 746 (752)
T ss_pred cCceEC-CCCCEEeCCCCCCCCCCEEEeCCcc------------CCcHHHHHHHHHHHHHHHHHH
Confidence 388888 78999999999 9999999999999 356688899999999999985
No 62
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.32 E-value=8.3e-07 Score=84.08 Aligned_cols=56 Identities=27% Similarity=0.420 Sum_probs=48.0
Q ss_pred cccccCCeeccCCCceecCC----CC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 4 AVSNAGVKVIPENAKIDSDN----EQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~----~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
.+++.|++++ ++|.|.||+ ++ ||.|+|||+|||+. .+.++..|+.+|+.||.+|..
T Consensus 572 ~~~~~gl~~~-~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~------------g~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 572 WLQGSGIKLD-KWGLIQTGDVGYLPTQTHLKKVFAGGDAVH------------GADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred cccccCcccC-CCCCEEeCCCcccCcccCCCCEEEcCCCCC------------CchHHHHHHHHHHHHHHHHHH
Confidence 4677899998 789999986 37 99999999999993 466889999999999999863
No 63
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.30 E-value=9.3e-07 Score=81.14 Aligned_cols=55 Identities=31% Similarity=0.427 Sum_probs=45.7
Q ss_pred cccccCCeeccCCCcee-cCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 4 AVSNAGVKVIPENAKID-SDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~-Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.++++|++++ ++|.|. +|+++ ||.|+|||+|||+ +.+.++..|..+|+.||.++.
T Consensus 419 ~~~~~gl~~~-~~G~i~~~~~~~~Ts~~gVfAaGD~~------------~g~~~~~~Av~~G~~AA~~i~ 475 (485)
T TIGR01317 419 LLDDFGVKKT-RRGNISAGYDDYSTSIPGVFAAGDCR------------RGQSLIVWAINEGRKAAAAVD 475 (485)
T ss_pred cccccCcccC-CCCCEEecCCCceECCCCEEEeeccC------------CCcHHHHHHHHHHHHHHHHHH
Confidence 4677889887 689885 45778 9999999999999 345677889999999999874
No 64
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.29 E-value=2.4e-07 Score=85.53 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=44.8
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
.+++. ++++ ++|+|.||++| |+.|+|||+|||+. .....+..|..+|+.||.++.+
T Consensus 454 ~l~~~-~~~~-~~G~I~vd~~~~Ts~p~IyAaGDv~~-----------~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 454 WLKDA-VELN-RRGEIVIDERGRTSVPGIFAAGDVTT-----------VPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred HHhhh-cccC-CCCeEEECCCCCCCCCCEEEcccccC-----------CccceEEEEEccHHHHHHHHHH
Confidence 34555 7787 68999999999 99999999999994 2224556789999999988764
No 65
>KOG2495|consensus
Probab=98.20 E-value=1.4e-06 Score=77.53 Aligned_cols=45 Identities=29% Similarity=0.336 Sum_probs=38.5
Q ss_pred ceecCCCC--CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 18 KIDSDNEQ--TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 18 ~I~Vd~~l--Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
++.|||+| .+.+||||+|||+..+ +.++++++|.+||.++|+|+-
T Consensus 347 ~L~vDE~LrV~G~~nvfAiGDca~~~---------~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 347 GLAVDEWLRVKGVKNVFAIGDCADQR---------GLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred eeeeeceeeccCcCceEEeccccccc---------cCccHHHHHHHHHHHHHHHHH
Confidence 59999999 8999999999999422 345689999999999999873
No 66
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.20 E-value=9.2e-07 Score=81.71 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=44.8
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
.++.. ++++ ++|+|.||++| |+.|+|||+|||+. ........|..+|..||.++..
T Consensus 453 ~l~~~-v~~~-~~g~i~vd~~l~Ts~p~IyAaGDv~~-----------~~~k~~~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 453 WLKGT-VELN-RRGEIIVDARGATSVPGVFAAGDCTT-----------VPYKQIIIAMGEGAKAALSAFD 509 (517)
T ss_pred HHhhh-eeeC-CCCcEEECcCCCCCCCCEEECccccC-----------CCCCEEEEhhhhHHHHHHHHHH
Confidence 34444 7787 68999999999 99999999999995 2334567888899999888754
No 67
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.11 E-value=3.8e-06 Score=82.71 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=45.1
Q ss_pred ccCCeeccCCCceecCCC-C-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 7 NAGVKVIPENAKIDSDNE-Q-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 7 ~~gl~~~~~~G~I~Vd~~-l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
..|++++ ++|.|+||++ + ||.|+|||+|||+. ++.++..|+.+|+.||.+|.
T Consensus 570 ~~gle~~-~~G~I~vd~~~~~Ts~pgVFAaGD~~~------------G~~~vv~Ai~eGr~AA~~I~ 623 (944)
T PRK12779 570 EPGLKTN-KWGTIEVEKGSQRTSIKGVYSGGDAAR------------GGSTAIRAAGDGQAAAKEIV 623 (944)
T ss_pred ccCceEC-CCCCEEECCCCCccCCCCEEEEEcCCC------------ChHHHHHHHHHHHHHHHHHH
Confidence 3478888 7899999974 6 99999999999993 45688999999999999985
No 68
>PRK10262 thioredoxin reductase; Provisional
Probab=98.10 E-value=1.4e-06 Score=75.34 Aligned_cols=52 Identities=25% Similarity=0.331 Sum_probs=39.0
Q ss_pred ccCCeeccCCCceecCC-----CC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 7 NAGVKVIPENAKIDSDN-----EQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 7 ~~gl~~~~~~G~I~Vd~-----~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+.+++++ +|+|.||+ ++ ||.|+|||+|||++ ..+.....|..+|+.||..+.
T Consensus 254 ~~~l~~~--~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~-----------~~~~~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 254 EGQLELE--NGYIKVQSGIHGNATQTSIPGVFAAGDVMD-----------HIYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred hcccccc--CCEEEECCCCcccccccCCCCEEECeeccC-----------CCcceEEEEehhHHHHHHHHH
Confidence 3467765 68899997 78 99999999999995 223344458888888887664
No 69
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.09 E-value=4.6e-06 Score=77.90 Aligned_cols=53 Identities=28% Similarity=0.424 Sum_probs=44.4
Q ss_pred ccc-cCCeeccCCCceecCC-CC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 5 VSN-AGVKVIPENAKIDSDN-EQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 5 l~~-~gl~~~~~~G~I~Vd~-~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+++ .|++ + ++|+|.||+ ++ |+.|+|||+|||+. .+.++..|+.+|+.+|.+|.
T Consensus 385 ~~~~~gl~-~-~~G~i~vd~~~~~ts~~~Vfa~GD~~~------------g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 385 LESVPGVE-V-GRGVVQVDPNFMMTGRPGVFAGGDMVP------------GPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred hhhccCcc-c-CCCCEEeCCCCccCCCCCEEeccCcCC------------CchHHHHHHHHHHHHHHHHH
Confidence 443 5777 6 689999999 57 99999999999993 56788899999999999874
No 70
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3.2e-06 Score=73.25 Aligned_cols=54 Identities=31% Similarity=0.428 Sum_probs=41.5
Q ss_pred ccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 5 l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+++.++ ++ ++|+|+||+.| ||+|+|||+|||+. ........|..+|-+||.++.
T Consensus 243 ~~~~~~-~~-~~g~I~v~~~~~TsvpGifAaGDv~~-----------~~~rqi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 243 LKGLGV-LD-ENGYIVVDEEMETSVPGIFAAGDVAD-----------KNGRQIATAAGDGAIAALSAE 297 (305)
T ss_pred Hhhccc-cC-CCCcEEcCCCcccCCCCEEEeEeecc-----------CcccEEeehhhhHHHHHHHHH
Confidence 455555 67 79999999999 99999999999995 222355667777888877654
No 71
>PRK13984 putative oxidoreductase; Provisional
Probab=98.03 E-value=5.9e-06 Score=77.72 Aligned_cols=48 Identities=27% Similarity=0.458 Sum_probs=40.1
Q ss_pred CCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 9 GVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 9 gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+++++ +|+|.||+++ ||.|+|||+|||+. .+.+ ..|+.+|+.||.+|.
T Consensus 550 ~l~~~--~G~i~vd~~~~Ts~~gVfAaGD~~~------------~~~~-v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 550 KLEFV--RGRILTNEYGQTSIPWLFAGGDIVH------------GPDI-IHGVADGYWAAEGID 598 (604)
T ss_pred Ccccc--CCeEEeCCCCccCCCCEEEecCcCC------------chHH-HHHHHHHHHHHHHHH
Confidence 46654 7889999999 99999999999994 3444 569999999999975
No 72
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.98 E-value=1e-05 Score=80.34 Aligned_cols=51 Identities=31% Similarity=0.470 Sum_probs=44.0
Q ss_pred cCCeeccCCCceecCC-----CC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 8 AGVKVIPENAKIDSDN-----EQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 8 ~gl~~~~~~G~I~Vd~-----~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.|++++ ++|.|.||+ ++ ||.|+|||+|||+. ++.++..|+.+|+.||.+|.
T Consensus 695 ~gl~l~-~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~------------G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 695 PGLALN-KWGNIAADDGKLESTQSTNLPGVFAGGDIVT------------GGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred CCcccC-CCCcEEeCCCccccCcCCCCCCEEEecCcCC------------CccHHHHHHHHHHHHHHHHH
Confidence 378887 689999997 67 99999999999993 56688899999999999874
No 73
>KOG1346|consensus
Probab=97.95 E-value=1.2e-05 Score=71.71 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=93.2
Q ss_pred cccccCCeeccCCCceecCCCCCCCCCeEEcCccCCCCCCCCCCCCCCCCch--hHHHHHHHHHHHHHHhCCCCcCCCcc
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPEL--TPVAVQAGKLLAARLYGNGTTQMDYQ 81 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~lTs~p~IyA~GD~a~~~~~~~~~~~~~~~~l--~~~A~~~g~~aa~nl~g~~~~~~~~~ 81 (212)
..+.+||+++..=|++.||..|.-..|||++||++. .+|..-|+... +-.|.-.||.|+.||.|..+ +...+
T Consensus 453 la~~sgLeiD~~lGGfrvnaeL~ar~NvwvAGdaac-----F~D~~LGrRRVehhdhavvSGRLAGENMtgAak-py~hq 526 (659)
T KOG1346|consen 453 LAEASGLEIDEKLGGFRVNAELKARENVWVAGDAAC-----FEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAK-PYKHQ 526 (659)
T ss_pred hcccccceeecccCcEEeeheeecccceeeecchhh-----hhcccccceeccccccceeeceecccccccccC-Ccccc
Confidence 356778999833478999999933489999999997 56666666544 34688899999999998642 12122
Q ss_pred cceeEEEcC--Cceee--ecCCH------------------HHHHHhhCCCCEEEEE--------Eeecccccccc---C
Q psy11186 82 NVATTVFTP--LEYGC--VGLSE------------------EKAEELYGADNLEIYH--------AYYKPTEFFIP---Q 128 (212)
Q Consensus 82 ~~~~~~~~~--~~ia~--vGlt~------------------~~a~~~~~~~~~~~~~--------~~~~~~~~~~~---~ 128 (212)
. .+|++ |++++ +|+-. +++.+.-. .++.... ....+....++ .
T Consensus 527 s---mFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se~sd-t~v~~~s~s~s~ss~~~~~~s~~~v~~~P~ 602 (659)
T KOG1346|consen 527 S---MFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSESSD-TDVPETSTSSSQSSKSDAGASQDGVTCDPD 602 (659)
T ss_pred c---eeeeccCcccccceeeecccCCCcceeeeccccccchhhhhhccC-CCCccccccccccccccCCcCCCCCccCcc
Confidence 2 23332 33322 22211 11111100 0000000 00000000111 1
Q ss_pred CCCCceEEEEEEecCCCCeEEEEEEECccHHHHHHHHHHHHHCCCCHHHHhh
Q psy11186 129 RNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLES 180 (212)
Q Consensus 129 ~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i~~~~~ai~~~~t~~~l~~ 180 (212)
.....|.-.++|. ++++|+|+.+..- -..+.+....|+.+...+||.+
T Consensus 603 e~~~ygKgViFYl--~d~~iVGilLwN~--Fnr~~~AR~II~d~kk~ddlnE 650 (659)
T KOG1346|consen 603 EAGNYGKGVIFYL--KDDKIVGILLWNL--FNRIGLARTIINDNKKYDDLNE 650 (659)
T ss_pred cccccCceEEEEe--cCCcEEEEEehhh--hccchhhHHHhccccchhhHHH
Confidence 0012344445554 4899999988765 4578889999999999998877
No 74
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=2.7e-05 Score=68.12 Aligned_cols=35 Identities=34% Similarity=0.473 Sum_probs=31.8
Q ss_pred ccccccCCeeccCCCceecCCCC-CCCCCeEEcCccCC
Q psy11186 3 PAVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLH 39 (212)
Q Consensus 3 ~~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~ 39 (212)
.+|+.+ ++++ ++|.|.||... ||.|+|||+|||..
T Consensus 455 ~WLkg~-vel~-~rGEIivD~~g~TsvpGvFAAGD~T~ 490 (520)
T COG3634 455 EWLKGA-VELN-RRGEIIVDARGETNVPGVFAAGDCTT 490 (520)
T ss_pred hHhhch-hhcC-cCccEEEecCCCcCCCceeecCcccC
Confidence 457776 8998 89999999999 99999999999996
No 75
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.39 E-value=0.00016 Score=66.56 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=44.1
Q ss_pred ccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 7 NAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 7 ~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
..|+..+ ++|+|++|+.+ |++|+|||+|||.. |...+.-.++.+|+.+|++|..
T Consensus 365 ~~gv~~n-~~G~V~~d~~~~T~ipGvyAaGDi~~-----------Gp~gvI~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 365 KRGVVPN-VHGRVLSSASGADTEPGLYVVGWLKR-----------GPTGIIGTNLTCAEETVASIAE 419 (491)
T ss_pred CcCeeEC-CCceEEeCCCCccCCCCEEEeeeEec-----------CCCCeeeecHhhHHHHHHHHHH
Confidence 3467777 78999999999 99999999999995 4444777788888888888864
No 76
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.66 E-value=0.0024 Score=60.38 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=35.8
Q ss_pred ceecC-------------CCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 18 KIDSD-------------NEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 18 ~I~Vd-------------~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+|.|| +++ |++|++||+|||+. ++...+.+.+..+|++++.++.
T Consensus 371 Gi~vd~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~----------~~~~~l~~~s~~~g~~ag~~~~ 428 (608)
T PRK06854 371 GYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVG----------GSPHKFSSGSFAEGRIAAKAAV 428 (608)
T ss_pred EEEecCcccccccccccccccccCCCCEEEeeecCC----------CCcchhHHHHHHHHHHHHHHHH
Confidence 39999 999 99999999999984 0234577888888999888875
No 77
>KOG0404|consensus
Probab=96.58 E-value=0.0011 Score=54.98 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=37.2
Q ss_pred cccccCCeeccCCCceecCCCC--CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ--TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAA 68 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l--Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~ 68 (212)
.|++ +++++ ++|+|++-+-- ||+|++||+||+-+ .++..+..|...|.++|.
T Consensus 259 ~l~g-qve~d-~~GYi~t~pgts~TsvpG~FAAGDVqD-----------~kyRQAvTaAgsGciaal 312 (322)
T KOG0404|consen 259 FLKG-QVELD-EDGYIVTRPGTSLTSVPGVFAAGDVQD-----------KKYRQAVTAAGSGCIAAL 312 (322)
T ss_pred HhcC-ceeec-cCceEEeccCcccccccceeeccccch-----------HHHHHHHhhhccchhhhh
Confidence 3555 89999 89999997554 99999999999886 344444445445555543
No 78
>KOG3851|consensus
Probab=95.94 E-value=0.0059 Score=53.19 Aligned_cols=56 Identities=21% Similarity=0.445 Sum_probs=41.2
Q ss_pred CccccccCCeeccCCCceecCCC-C--CCCCCeEEcCccCCCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHh
Q psy11186 2 PPAVSNAGVKVIPENAKIDSDNE-Q--TNIPNVFAVGDVLHFSPFPVLPLFQEKP--ELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 2 ~~~l~~~gl~~~~~~G~I~Vd~~-l--Ts~p~IyA~GD~a~~~~~~~~~~~~~~~--~l~~~A~~~g~~aa~nl~ 71 (212)
|+.|.++.+. + +.|++.||.. + +..||||++|||.+ .| ..+.....|..++-+|+.
T Consensus 297 pe~l~~s~~a-d-ktGfvdVD~~TlQs~kypNVFgiGDc~n------------~PnsKTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 297 PEVLANSDLA-D-KTGFVDVDQSTLQSKKYPNVFGIGDCMN------------LPNSKTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred hhhhhcCccc-C-cccceecChhhhccccCCCceeeccccC------------CCchhhHHHHHhcCchhhhhHH
Confidence 6678888875 5 6899999987 3 78999999999994 33 233344456667777775
No 79
>PRK08275 putative oxidoreductase; Provisional
Probab=95.94 E-value=0.01 Score=55.45 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=30.5
Q ss_pred CceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 17 AKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 17 G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
|+|.||+++ |++|++||+|||+. ........|.-.|+.++.++.
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~-----------~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMAS-----------VPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCC-----------chhHHHHHHHHHHHHHHHHHH
Confidence 469999999 99999999999873 111222335556666666553
No 80
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.89 E-value=0.0094 Score=58.90 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.4
Q ss_pred CceecCCCC-CCCCCeEEcCccCC
Q psy11186 17 AKIDSDNEQ-TNIPNVFAVGDVLH 39 (212)
Q Consensus 17 G~I~Vd~~l-Ts~p~IyA~GD~a~ 39 (212)
|+|.||.++ |++|++||+|||+.
T Consensus 362 GGi~vd~~~~T~v~GLfAaGE~a~ 385 (897)
T PRK13800 362 SGVWVDEHARTTVPGLYAAGDLAC 385 (897)
T ss_pred ceEEecCCCcccCCCeEechhccC
Confidence 679999999 99999999999984
No 81
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.87 E-value=0.0077 Score=55.09 Aligned_cols=50 Identities=32% Similarity=0.482 Sum_probs=43.0
Q ss_pred CCeeccCCCceecCCCC--CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 9 GVKVIPENAKIDSDNEQ--TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 9 gl~~~~~~G~I~Vd~~l--Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+++.+ .+|.|.+|+.+ ||.|.|||.|||.+ ...+...|+.+||.+|+-+.
T Consensus 396 ~~~~~-~~g~i~~~~~~~~ts~~~vfa~gD~~~------------g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 396 GLKLD-KRGRIKVDENLQQTSIPGVFAGGDAVR------------GAALVVWAIAEGREAAKAID 447 (457)
T ss_pred ccccC-CCCceecccccccccCCCeeeCceecc------------chhhhhhHHhhchHHHHhhh
Confidence 67788 78999999997 99999999999994 35677889999999998653
No 82
>PRK07804 L-aspartate oxidase; Provisional
Probab=95.30 E-value=0.028 Score=52.43 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=33.4
Q ss_pred CceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhH----HHHHHHHHHHHHHhC
Q psy11186 17 AKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP----VAVQAGKLLAARLYG 72 (212)
Q Consensus 17 G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~----~A~~~g~~aa~nl~g 72 (212)
|+|.||+++ |++|++||+|||+. .. ..|...+.. .+.-.|+.++.++..
T Consensus 358 GGi~vd~~~~t~i~GLyAaGe~~~------~g-~hGa~~l~~~sl~~~~v~G~~ag~~aa~ 411 (541)
T PRK07804 358 GGVVTDVYGRTSVPGLYAAGEVAC------TG-VHGANRLASNSLLEGLVVGERAGAAAAA 411 (541)
T ss_pred CCEEECCCCcccCCCeEEcccccc------cc-cCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999 99999999999973 00 112233333 355667777777653
No 83
>KOG0399|consensus
Probab=95.06 E-value=0.0093 Score=59.35 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=43.7
Q ss_pred cccccCCeeccCCCceecCCC-C-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy11186 4 AVSNAGVKVIPENAKIDSDNE-Q-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARL 70 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~-l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl 70 (212)
..++.+++.+ .|+.|..-.. . |+.+.|||+|||-. +..|..+|+++||-+|+.+
T Consensus 2060 ~~~~~~~~~d-~rsni~t~~~~y~t~v~~vfaagdcrr------------gqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2060 VIEQLNLKTD-PRSNILTPKDSYSTDVAKVFAAGDCRR------------GQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred hhhhcCcccC-ccccccCCCccccccccceeecccccC------------CceEEEEEehhhhHHHHHH
Confidence 4567889999 6887877433 5 99999999999994 4568888999999999875
No 84
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=95.06 E-value=0.029 Score=53.23 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=28.1
Q ss_pred CCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 23 NEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 23 ~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.+. |++|++||+|||+. ++...+...+..+|.+++.++.
T Consensus 400 ~~~~T~i~gLyA~Ge~~~----------~~~h~l~~nsl~eg~~ag~~a~ 439 (614)
T TIGR02061 400 YNRMTTVEGLFTCGDGVG----------ASPHKFSSGSFTEGRIAAKAAV 439 (614)
T ss_pred cCCccccCCEEeceeccc----------CcchhhHHhHHHHHHHHHHHHH
Confidence 777 99999999999983 0222366666777777777654
No 85
>PRK08071 L-aspartate oxidase; Provisional
Probab=94.71 E-value=0.051 Score=50.36 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=34.2
Q ss_pred CceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHhC
Q psy11186 17 AKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLYG 72 (212)
Q Consensus 17 G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~g 72 (212)
|+|.||++. |++|++||+|+|+.. . ..|.-.+ ...+.-.|++|+.++..
T Consensus 333 GGi~vd~~~~t~I~GLyAaGE~a~~------g-~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 333 GGVKTNLDGETSIPGLYAIGEVACT------G-VHGANRLASNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred CCEEECCCCcccCCCeEEccccccc------c-cCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 679999999 999999999999830 0 0122122 23467778888888754
No 86
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=94.55 E-value=0.052 Score=51.17 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=33.9
Q ss_pred CCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHhC
Q psy11186 16 NAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLYG 72 (212)
Q Consensus 16 ~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~g 72 (212)
.|+|.||+++ |++|++||+|||+. .. ..|.-.+ ...|.-.|++|+.++..
T Consensus 358 ~GGi~vd~~~~t~i~GLyAaGe~~~------~g-~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 358 MGGIETDQNCETRIKGLFAVGECSS------VG-LHGANRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred CCCEEECCCCccccCCEEecccccc------cc-cCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 4779999999 99999999999973 00 0121112 23466677888777653
No 87
>PRK09077 L-aspartate oxidase; Provisional
Probab=94.23 E-value=0.076 Score=49.49 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHhC
Q psy11186 16 NAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLYG 72 (212)
Q Consensus 16 ~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~g 72 (212)
-|+|.||.+. |++|++||+|+|+.. . ..|...+ ...|.-.|++|+.++..
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~------g-~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYT------G-LHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred cCCeeECCCCccccCCEEeccccccc------c-cCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 3669999999 999999999999830 0 0122112 23467778888888764
No 88
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.10 E-value=0.065 Score=49.99 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=34.1
Q ss_pred CCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHhC
Q psy11186 16 NAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKP--ELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 16 ~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~--~l~~~A~~~g~~aa~nl~g 72 (212)
-|+|.||+++ |++|+.||+|+|+. + ++.. ++. .-...|.-.|++|++++..
T Consensus 348 ~GGi~vd~~~~t~IpGLyAaGE~~g--g--~hG~--~rlgG~sl~~a~v~Gr~Ag~~aa~ 401 (543)
T PRK06263 348 MGGIRINEDCETNIPGLFACGEVAG--G--VHGA--NRLGGNALADTQVFGAIAGKSAAK 401 (543)
T ss_pred cCCEEECCCCcccCCCeEecccccc--C--CCCC--CccchhhhhhhHHHHHHHHHHHHH
Confidence 3679999999 99999999999873 0 1000 111 1123567778888887754
No 89
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.02 E-value=0.086 Score=47.81 Aligned_cols=61 Identities=21% Similarity=0.148 Sum_probs=40.5
Q ss_pred cccccCCeeccCCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 4 AVSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 4 ~l~~~gl~~~~~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
.+..+|+++| .....+|+.. +..+|+||+|++.. .+|....++ -.=+|+..|-.||+++..
T Consensus 357 p~~~~GV~~d--~~~~p~~~~g~~~~~nl~a~G~vl~-----g~d~~~~~~-g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 357 PFLQFGVATD--ATLRPLDSQGGPVIENLYAAGAVLG-----GYDPIREGC-GSGVALATALHAAEQIAE 418 (422)
T ss_pred chhhcCceEC--CCcCcccCCCCeeccceEEeeehhc-----CCchHHhCC-CchhHHHHHHHHHHHHHH
Confidence 3567899997 4456679999 89999999999994 222221111 012577777777777753
No 90
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.01 E-value=0.1 Score=47.92 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=34.8
Q ss_pred CCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHhC
Q psy11186 16 NAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLYG 72 (212)
Q Consensus 16 ~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~g 72 (212)
-|+|.||++. |++|++||+|+|+.. .. .|.-.+ ...|.-.|++|+.++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~------g~-hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACT------GL-HGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECcccccc------cc-CcccccchhHHHHHHHHHHHHHHHHHh
Confidence 3679999999 999999999999730 00 111112 23467778888888764
No 91
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=93.77 E-value=0.091 Score=49.52 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=34.0
Q ss_pred CCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHhC
Q psy11186 16 NAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKP--ELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 16 ~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~--~l~~~A~~~g~~aa~nl~g 72 (212)
-|+|.||++. |++|+.||+|+|+.. + ++. .++. .-...+.-.|++|+.++..
T Consensus 357 ~GGi~~d~~~~t~i~GLyAaGe~a~~-G--~hG--anrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 357 MGGIETDINCETRIKGLFAVGECASV-G--LHG--ANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred CCCeeECcCcccccCCeEeeeccccc-C--cCC--CccccchhHHHHHHHHHHHHHHHHH
Confidence 3679999999 999999999999731 0 110 0110 1223466777787777654
No 92
>PRK08401 L-aspartate oxidase; Provisional
Probab=93.56 E-value=0.13 Score=47.09 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=34.5
Q ss_pred CCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchh----HHHHHHHHHHHHHHhC
Q psy11186 16 NAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELT----PVAVQAGKLLAARLYG 72 (212)
Q Consensus 16 ~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~----~~A~~~g~~aa~nl~g 72 (212)
-|+|.||+.+ |++|++||+|+|+.. + + .|.-.+. ..+.-.|+.++.++..
T Consensus 310 ~GGi~vd~~~~t~IpGLyAaGE~a~~-G--~----hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYRTGIKNLYAIGEAASN-G--F----HGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCcccCCCEEECcccccc-C--C----CCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 4779999999 999999999999730 0 0 1222222 3466778888888754
No 93
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=93.54 E-value=0.077 Score=48.24 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=31.2
Q ss_pred ceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 18 KIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 18 ~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+|.||+.| |+.+++|++||++ |-..-...|...|-.+|+-|+
T Consensus 438 ri~~d~~~~t~i~gLy~aGdGA------------G~argI~~Aaa~Gi~~A~~i~ 480 (486)
T COG2509 438 RIKVDEDLSTSIKGLYPAGDGA------------GLARGIVSAAADGIKAAEGIA 480 (486)
T ss_pred eEeecccceeeecceEEccccc------------cccchhHHHhhhhHHHHHHHH
Confidence 58999999 9999999999999 432233455556666766654
No 94
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=93.53 E-value=0.11 Score=47.70 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=35.9
Q ss_pred CceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHH----HHHHHHHHHHHhCC
Q psy11186 17 AKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVA----VQAGKLLAARLYGN 73 (212)
Q Consensus 17 G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A----~~~g~~aa~nl~g~ 73 (212)
|+|.||.+. ||+|+.||+|.|++ + .+.|.-.|+.++ .-.|.-+|+++.+.
T Consensus 342 GGI~vD~~GrTsi~gLYAiGEvA~-T------GlHGANRLASNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 342 GGIAVDANGRTSIPGLYAIGEVAC-T------GLHGANRLASNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred ccEEECCCCcccCcccEEeeeecc-c------ccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 669999999 99999999999994 1 122444577654 44556666777664
No 95
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=93.47 E-value=0.12 Score=48.93 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=31.7
Q ss_pred CceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHh
Q psy11186 17 AKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLY 71 (212)
Q Consensus 17 G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~ 71 (212)
|+|.||... |++|++||+|+|+. ..+ |...+ ...+.-.|++|+.++.
T Consensus 371 gG~~~d~~~~t~i~gL~a~Ge~~~-----~~h---g~nrl~~~sl~~~~v~g~~Ag~~aa 422 (603)
T TIGR01811 371 GGLWVDYDQMTNIPGLFAAGECDF-----SQH---GANRLGANSLLSAIADGYFALPFTI 422 (603)
T ss_pred CCeeECCCCcccCCCEEECccccc-----CcC---CCccchhHHHHHHHHHHHHHHHHHH
Confidence 679999999 99999999999973 111 21112 2345666677766654
No 96
>PRK07512 L-aspartate oxidase; Provisional
Probab=93.04 E-value=0.18 Score=46.76 Aligned_cols=49 Identities=24% Similarity=0.326 Sum_probs=33.7
Q ss_pred CceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHhC
Q psy11186 17 AKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLYG 72 (212)
Q Consensus 17 G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~g 72 (212)
|+|.||.+. |++|++||+|+|+. ... .|.-.+ ...+.-.|++++.++..
T Consensus 342 GGi~vd~~~~t~I~GLyAaGE~a~------~G~-hGanrl~gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 342 GGIAVDADGRSSLPGLWAAGEVAS------TGL-HGANRLASNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred CCEEECCCCccccCCEEecccccc------cCC-CcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999 99999999999973 000 121122 22356678888887754
No 97
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.98 E-value=0.15 Score=48.75 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=21.2
Q ss_pred CceecCCCC-CCCCCeEEcCccCC
Q psy11186 17 AKIDSDNEQ-TNIPNVFAVGDVLH 39 (212)
Q Consensus 17 G~I~Vd~~l-Ts~p~IyA~GD~a~ 39 (212)
|+|.||.+. |++|+.||+|+|+.
T Consensus 407 GGi~vd~~~~T~i~GLyAaGE~~~ 430 (640)
T PRK07573 407 GGLWVDYNLMSTIPGLFVIGEANF 430 (640)
T ss_pred CCEEECCCCccccCCEEECccccc
Confidence 669999999 99999999999973
No 98
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.85 E-value=0.19 Score=47.24 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=32.5
Q ss_pred CCceecCCCC-CC-CCCeEEcCccCCCCCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHh
Q psy11186 16 NAKIDSDNEQ-TN-IPNVFAVGDVLHFSPFPVLPLFQEKPE----LTPVAVQAGKLLAARLY 71 (212)
Q Consensus 16 ~G~I~Vd~~l-Ts-~p~IyA~GD~a~~~~~~~~~~~~~~~~----l~~~A~~~g~~aa~nl~ 71 (212)
-|+|.||.+. |+ +|++||+|+|+.. . ..|.-. ....+.-.|++|+.++.
T Consensus 346 ~GGi~vd~~~~t~~IpGLyAaGE~a~~------g-~hGanrlggnsl~~~~v~G~~Ag~~aa 400 (566)
T PRK06452 346 MGGIDVDIDGRNPDIVGLFSAGEAACV------S-VHGANRLGSNSLLDTLVFGQVTGRTVV 400 (566)
T ss_pred cCCeEECCCCCcCCcCCeEeccccccc------C-CCCcccccchHHHHHHHHHHHHHHHHH
Confidence 3679999999 85 9999999999830 0 002111 22346667777777765
No 99
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.85 E-value=0.12 Score=48.72 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=32.4
Q ss_pred CceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHh
Q psy11186 17 AKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLY 71 (212)
Q Consensus 17 G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~ 71 (212)
|+|.||.+. |++|++||+|+|+. + + .|.-.+ ...|.-.|++++.++.
T Consensus 356 GGi~vd~~~~t~I~GLyAaGE~~~--g--~----hGanrlggnsl~~~lv~Gr~Ag~~aa 407 (589)
T PRK08641 356 GGLWVDYDQMTNIPGLFAAGECDY--S--Y----HGANRLGANSLLSAIYGGMVAGPNAV 407 (589)
T ss_pred CCeEECCCCCeECCCEEECccccc--C--C----CCCCccchhhHHHHHHHHHHHHHHHH
Confidence 779999999 99999999999973 1 1 121112 2346666777777664
No 100
>PRK06175 L-aspartate oxidase; Provisional
Probab=92.56 E-value=0.21 Score=45.35 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=34.2
Q ss_pred CCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHh
Q psy11186 16 NAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLY 71 (212)
Q Consensus 16 ~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~ 71 (212)
-|+|.||... |++|+.||+|.|+. .. ..|.-.+ ...+.-.||+|++++.
T Consensus 331 ~GGi~vd~~~~t~i~gLYAaGE~a~------~g-~hG~nrl~gnsl~~~lvfGr~Ag~~a~ 384 (433)
T PRK06175 331 MGGIKVDLNSKTSMKNLYAFGEVSC------TG-VHGANRLASNSLLEGLVFSKRGAEKIN 384 (433)
T ss_pred cCCEEECCCccccCCCeEecccccc------cC-CCccccchhHHHHHHHHHHHHHHHHHH
Confidence 4779999999 99999999999972 00 0122122 2346777888888875
No 101
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.17 E-value=0.2 Score=47.64 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCceecCCCC--CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHh
Q psy11186 16 NAKIDSDNEQ--TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLY 71 (212)
Q Consensus 16 ~G~I~Vd~~l--Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~ 71 (212)
-|+|+||.+. |++|+.||+|+|+. .. .|...+ ...|.-.|++|+.++.
T Consensus 391 ~GGi~vd~~~~~t~IpGLYAaGE~ag-----g~---hGanrl~gnsl~~a~v~Gr~Ag~~aa 444 (626)
T PRK07803 391 MGGVEVDPDTGAATVPGLFAAGECAG-----GM---HGSNRLGGNSLSDLLVFGRRAGLGAA 444 (626)
T ss_pred cCCEEEcCCCCeeecCCeeEcccccc-----cc---CcCccccchhHHHHHHHHHHHHHHHH
Confidence 3679999874 99999999999983 11 121112 2346666777777664
No 102
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.78 E-value=0.25 Score=46.47 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=32.6
Q ss_pred CCceecCCCC-CC------CCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHh
Q psy11186 16 NAKIDSDNEQ-TN------IPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLY 71 (212)
Q Consensus 16 ~G~I~Vd~~l-Ts------~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~ 71 (212)
-|+|.||.+. |+ +|+.||+|+|+.. . ..|.-.+ ...|.-.|++|+.++.
T Consensus 352 ~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~------g-~hGanrlggnsl~~~~v~Gr~Ag~~aa 411 (577)
T PRK06069 352 MGGIHTDVYGRVLTADGEWVRGLWAAGEAAAV------S-VHGANRLGSNSTAECLVWGRIAGEQAA 411 (577)
T ss_pred CCCceECCCCcCcCCCCCEeCCeEeccccccc------c-ccccccchhhHHHHHHHHHHHHHHHHH
Confidence 4679999999 88 9999999999830 0 0111111 2346667777777765
No 103
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=91.65 E-value=0.32 Score=46.63 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=20.7
Q ss_pred CceecCCCC-C-CCCCeEEcCccCC
Q psy11186 17 AKIDSDNEQ-T-NIPNVFAVGDVLH 39 (212)
Q Consensus 17 G~I~Vd~~l-T-s~p~IyA~GD~a~ 39 (212)
|+|.||.+. | ++|++||+|+|+.
T Consensus 373 GGi~vd~~~~t~~I~GLyAaGE~a~ 397 (657)
T PRK08626 373 GGIRTNPTGESYGLKGLFSAGEAAC 397 (657)
T ss_pred CCceECCCCCCcccCCEEecccccc
Confidence 679999999 8 6999999999983
No 104
>PRK07395 L-aspartate oxidase; Provisional
Probab=90.74 E-value=0.44 Score=44.68 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=32.9
Q ss_pred CceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhH----HHHHHHHHHHHHHh
Q psy11186 17 AKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP----VAVQAGKLLAARLY 71 (212)
Q Consensus 17 G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~----~A~~~g~~aa~nl~ 71 (212)
|+|+||.+. |++|++||+|+|+. ... .|.-.+.- .+.-.|+.++..+.
T Consensus 348 GGi~vd~~~~t~I~GLyAaGE~a~------~G~-hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 348 GGVVTDLNNQTSIPGLYAVGETAS------TGV-HGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCeeECCCCcccCCCEEECccccc------cCC-CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 679999999 99999999999973 111 12223432 35566777777764
No 105
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.40 E-value=0.39 Score=45.15 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCceecCCCC-C------CCCCeEEcCccCCCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHhC
Q psy11186 16 NAKIDSDNEQ-T------NIPNVFAVGDVLHFSPFPVLPLFQEKP--ELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 16 ~G~I~Vd~~l-T------s~p~IyA~GD~a~~~~~~~~~~~~~~~--~l~~~A~~~g~~aa~nl~g 72 (212)
-|+|.||.+. | ++|++||+|+|+.- + ++.. ++. .....|.-.|++|+.++..
T Consensus 351 ~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~-g--~hGa--nrlggnsl~~~~v~G~~Ag~~aa~ 411 (575)
T PRK05945 351 MGGIPVNTDGRVRRSADGLVEGFFAAGECACV-S--VHGA--NRLGSNSLLECVVYGRRTGAAIAE 411 (575)
T ss_pred CCCeeECCCceeccCCCCccCCeEeeeccccc-c--cccc--ccccchhHHHHHHHHHHHHHHHHH
Confidence 3668888776 5 79999999999830 0 0100 111 1224467778888887754
No 106
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=89.80 E-value=0.51 Score=44.16 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=31.0
Q ss_pred CceecCCCC-----CCCCCeEEcCccCCCCCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHh
Q psy11186 17 AKIDSDNEQ-----TNIPNVFAVGDVLHFSPFPVLPLFQEKPE----LTPVAVQAGKLLAARLY 71 (212)
Q Consensus 17 G~I~Vd~~l-----Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~----l~~~A~~~g~~aa~nl~ 71 (212)
|+|.||+.+ |++|+.||+|+|+.- . ..|... -...|.-.|++|+.++.
T Consensus 343 GGi~id~~~~v~~~t~I~GLyAaGe~a~~------g-~hGa~rl~g~sl~~a~v~G~~Ag~~aa 399 (566)
T TIGR01812 343 GGIPTDYTGRVICETIVKGLFAAGECACV------S-VHGANRLGGNSLLELVVFGRIAGEAAA 399 (566)
T ss_pred CCeEECcCcccccCcccCCeeeccccccc------C-cCcccccchhhHHHHHHHHHHHHHHHH
Confidence 668888765 789999999999830 0 011111 22346667777777765
No 107
>PLN02815 L-aspartate oxidase
Probab=89.59 E-value=0.56 Score=44.44 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=32.8
Q ss_pred CCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchh----HHHHHHHHHHHHHHh
Q psy11186 16 NAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELT----PVAVQAGKLLAARLY 71 (212)
Q Consensus 16 ~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~----~~A~~~g~~aa~nl~ 71 (212)
-|+|.||.+. |++|++||+|+|+. .. +.|.-.+. ..+.-.|++|+.++.
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~------~G-~hGanrl~gnsl~e~lvfGr~Ag~~aa 430 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVAC------TG-LHGANRLASNSLLEALVFARRAVQPSI 430 (594)
T ss_pred CCCeeECCCCceecCCEEecccccc------cC-CCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 3679999999 99999999999983 00 01221222 345666777777664
No 108
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=89.47 E-value=0.75 Score=43.25 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=25.0
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHhC
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLYG 72 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~g 72 (212)
|++|+.||+|+|+. .. ..|.-.+ ...|.-.|++|+.++..
T Consensus 351 t~IpGLyAaGE~a~------~g-~hGanrlggnsl~~a~vfGr~Ag~~aa~ 394 (565)
T TIGR01816 351 QIVPGLYAAGEAAC------VS-VHGANRLGTNSLLDLVVFGRAAGLSAAE 394 (565)
T ss_pred CccCCeeecccccc------cC-CCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 68999999999983 00 0121112 23466778888877753
No 109
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.54 E-value=0.66 Score=43.85 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=31.1
Q ss_pred CceecCCCC-C---------CCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHhC
Q psy11186 17 AKIDSDNEQ-T---------NIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLYG 72 (212)
Q Consensus 17 G~I~Vd~~l-T---------s~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~g 72 (212)
|+|.||.+. | ++|+.||+|+|+. .. +.|.-.+ ...+.-.|++|+.++..
T Consensus 362 GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~------~g-~hGanrl~gnsl~~~~v~Gr~Ag~~aa~ 424 (591)
T PRK07057 362 GGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSC------VS-VHGANRLGTNSLLDLVVFGRAAGNHIVD 424 (591)
T ss_pred CCeeECCCCcEeccccCCCCeeCCeEeCccccc------cC-CCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 557777665 5 7999999999983 00 0122112 23467778888887754
No 110
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.23 E-value=0.75 Score=43.28 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=29.1
Q ss_pred CceecCCCC-C----------CCCCeEEcCccCCCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHh
Q psy11186 17 AKIDSDNEQ-T----------NIPNVFAVGDVLHFSPFPVLPLFQEKP--ELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 17 G~I~Vd~~l-T----------s~p~IyA~GD~a~~~~~~~~~~~~~~~--~l~~~A~~~g~~aa~nl~ 71 (212)
|+|.||... | ++|+.||+|+|+.. + ++.. ++. .-...+.-.|++|+.++.
T Consensus 340 GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~-g--~hGa--nrlggnsl~~a~v~Gr~Ag~~aa 402 (570)
T PRK05675 340 GGVATNIHGQAITQDANGNDQIIPGLFAVGEVACV-S--VHGA--NRLGGNSLLDLVVFGRAAGLHLE 402 (570)
T ss_pred CCcccCCCCeeecccccccCCccCCeeeccccccc-C--CCCc--cccccccHHHHHHHHHHHHHHHH
Confidence 456666555 4 79999999999730 0 0110 111 112346677777777764
No 111
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=87.77 E-value=0.62 Score=46.72 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=26.5
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
|+.|+|||+|||+ +.. .+..|..+|+.||..+.
T Consensus 436 t~v~gVyaaGD~~------------g~~-~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 436 DAVQGCILAGAAN------------GLF-GLAAALADGAAAGAAAA 468 (985)
T ss_pred CCCCCeEEeeccC------------Ccc-CHHHHHHHHHHHHHHHH
Confidence 7899999999988 433 34558999999998874
No 112
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=87.55 E-value=0.69 Score=42.05 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=32.5
Q ss_pred CCceecCCCC-C------CCCCeEEcCccCC--CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 16 NAKIDSDNEQ-T------NIPNVFAVGDVLH--FSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 16 ~G~I~Vd~~l-T------s~p~IyA~GD~a~--~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
.|+|.||+++ + .+|++||+|.|+. +.+ .+.. +. .-...+.-.||+|++++..
T Consensus 399 ~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g---~~y~-~g-~~l~~~~~~G~iag~~aa~ 459 (466)
T PRK08274 399 YLGLKVDEDARVRFADGRPSPNLFAAGEMMAGNVLG---KGYP-AG-VGLTIGAVFGRIAGEEAAR 459 (466)
T ss_pred cccEEECCCceEECCCCCCCCCceeccccccccccc---CCCc-cc-cchhhhhhhHHHHHHHHHH
Confidence 4668888887 5 7999999999973 000 0000 00 1123467778888888764
No 113
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=86.94 E-value=1.1 Score=42.56 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=30.8
Q ss_pred CceecCCCC-C----------CCCCeEEcCccCCCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHhC
Q psy11186 17 AKIDSDNEQ-T----------NIPNVFAVGDVLHFSPFPVLPLFQEKP--ELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 17 G~I~Vd~~l-T----------s~p~IyA~GD~a~~~~~~~~~~~~~~~--~l~~~A~~~g~~aa~nl~g 72 (212)
|+|.||... | ++|++||+|+|+... ++. .++. .-...+.-.|++|+.++..
T Consensus 380 GGi~vd~~~~v~d~~~~~~~t~I~GLyAaGE~a~~g---~hG--anrlggnsl~~~~vfGr~Ag~~aa~ 443 (617)
T PTZ00139 380 GGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACAS---VHG--ANRLGANSLLDIVVFGRAAANTVME 443 (617)
T ss_pred CCeEEcCCceeeccccccCCCccCCceecccccccC---cCC--CcccchhhHHHHHHHHHHHHHHHHH
Confidence 557777664 4 799999999998300 000 0111 1223467778888887764
No 114
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.30 E-value=1.3 Score=41.68 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=28.8
Q ss_pred CceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHhC
Q psy11186 17 AKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLYG 72 (212)
Q Consensus 17 G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~g 72 (212)
|+|.||.+. |++|+.||+|+|+.- . ..|.-.+ ...+.-.|++|+.++..
T Consensus 357 GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~------g-~hGanrlggnsl~~~~v~G~~Ag~~aa~ 416 (583)
T PRK08205 357 GGIPTTVDGEVLRDNTTVVPGLYAAGECACV------S-VHGANRLGTNSLLDINVFGRRAGIAAAE 416 (583)
T ss_pred CCeeECCCceEecCCCCCcCCeeeccccccC------C-CCCCcCCchhhHHHHHHHHHHHHHHHHH
Confidence 446666554 579999999999730 0 0121111 23456667777777653
No 115
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.16 E-value=1.1 Score=42.35 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=25.0
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHhC
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPE----LTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~----l~~~A~~~g~~aa~nl~g 72 (212)
|++|+.||+|+|+.- . +.|... ....|.-.|++|+.++..
T Consensus 383 t~I~GLyAaGE~a~~------g-~hGanrlggnsl~~~~v~G~~Ag~~aa~ 426 (598)
T PRK09078 383 AVVPGLMAVGEAACV------S-VHGANRLGSNSLIDLVVFGRAAALRAAE 426 (598)
T ss_pred CccCceeeccccccc------C-CcCcccccchhHHHHHHHHHHHHHHHHH
Confidence 579999999999830 0 012111 223466778888887754
No 116
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=84.24 E-value=1.5 Score=41.89 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=25.3
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCc----hhHHHHHHHHHHHHHHhC
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPE----LTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~----l~~~A~~~g~~aa~nl~g 72 (212)
|++|+.||+|+|+.. . ..|.-. -...+.-.|++|+.++..
T Consensus 421 t~IpGLYAaGE~a~~------g-~hGanRlggnsL~~a~vfGr~Ag~~aa~ 464 (635)
T PLN00128 421 AVVPGLMAAGEAACA------S-VHGANRLGANSLLDIVVFGRACANRVAE 464 (635)
T ss_pred CccCceEeeeccccc------c-CCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 579999999999831 0 012111 233567778888887754
No 117
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.01 E-value=1.5 Score=41.43 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=24.1
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCch----hHHHHHHHHHHHHHHh
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL----TPVAVQAGKLLAARLY 71 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l----~~~A~~~g~~aa~nl~ 71 (212)
|++|+.||+|+|+.. + . .|.-.+ ...|.-.|++|+.++.
T Consensus 378 t~IpGLYAaGE~a~~-g--~----hGanrlggnsl~~a~v~Gr~Ag~~aa 420 (588)
T PRK08958 378 VVVPGLFAVGEIACV-S--V----HGANRLGGNSLLDLVVFGRAAGLHLQ 420 (588)
T ss_pred CccCCeEeccccccc-C--C----CCCccchhhHHHHHHHHHHHHHHHHH
Confidence 579999999999830 0 0 121112 2346677777777765
No 118
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=79.45 E-value=4.6 Score=37.41 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=33.3
Q ss_pred CceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCCCCCch-hHHHHHHHHHHHHHHhCC
Q psy11186 17 AKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL-TPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 17 G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l-~~~A~~~g~~aa~nl~g~ 73 (212)
|+|++|+.+ ..+|++||+|.|+-- ++...+..... ...|.-.||+|++++.++
T Consensus 451 GGl~in~~~qVl~~~g~pIpGLYAaG~~~gg----~~g~~Y~~~G~~~~~a~~fGriAg~~aa~~ 511 (513)
T PRK12837 451 GGLRTDTAARVLDTDGRPIPGLYAAGNTMAA----VSGTTYPGGGNPIGASMLFSHLAALDMAGR 511 (513)
T ss_pred CCceECCCceEECCCCCEeCCceeccccccc----ccccCCCCCccchHHHHHHHHHHHHHHhcC
Confidence 456676664 348999999998730 11111100112 456888999999999765
No 119
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=79.05 E-value=5.1 Score=36.06 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=30.5
Q ss_pred CceecCCCC-------CCCCCeEEcCccCC--CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 17 AKIDSDNEQ-------TNIPNVFAVGDVLH--FSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 17 G~I~Vd~~l-------Ts~p~IyA~GD~a~--~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
|+|.+|+.+ ..+|++||+|.|+. +.+ .+...| .-...|.-.||+|++++..
T Consensus 369 GGl~id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g---~~y~~G--~~~~~a~~~GriAg~~aa~ 428 (432)
T TIGR02485 369 YGLVVDATARVRLNDAVAPDNLFAAGTNMAGNVLG---QGYLAG--AGLTIAAVFGRIAGRAAAR 428 (432)
T ss_pred cceEECCCceEECCCCCCCCCeeeccccccccccc---CCCccc--hhhHHHHHHHHHHHHHHHH
Confidence 446666665 24699999999862 111 000000 1234578889999998864
No 120
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=78.05 E-value=4.7 Score=37.65 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=32.3
Q ss_pred CCceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCC-CCCchhHHHHHHHHHHHHHHh
Q psy11186 16 NAKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQ-EKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 16 ~G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~-~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.|+|++|+++ +.+|++||+|.|+.+.+--.+.... +. .-.-.|+-.||+|++++.
T Consensus 485 ~GGl~id~~~qVld~dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G-~~lg~a~~~GriAg~~aa 547 (549)
T PRK12834 485 LGGLETDLDSRVLGADGTPLPGLYAAGEAAGFGGGGVHGYNALEG-TFLGGCIFSGRAAGRAAA 547 (549)
T ss_pred ccCEeECCCCceeCCCCCEeCCeeeceecccccCCCcCCcccccc-chHHHHHHHHHHHHHHHh
Confidence 3557777765 2479999999998311000111100 00 123467888999999875
No 121
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=77.73 E-value=6.1 Score=37.20 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=31.7
Q ss_pred CceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCCCCC-chhHHHHHHHHHHHHHHhC
Q psy11186 17 AKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQEKP-ELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 17 G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~~~~-~l~~~A~~~g~~aa~nl~g 72 (212)
|++.+|++. +.+|++||+|.|+.- ++....... .....|.-.||+|++++.+
T Consensus 504 GGl~id~~~qVLd~dg~pI~GLYAaG~~~gg----~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 504 GGLRADERARVLREDGSVIDGLYAIGNTAAN----AFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCeeECCCceEECCCCCCCCCeeEeeeeccc----cccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 456666553 358999999998731 111100000 1234678889999998864
No 122
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=77.36 E-value=4.5 Score=38.18 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.1
Q ss_pred CceecC-CCC-CCCCCeEEcCccCC
Q psy11186 17 AKIDSD-NEQ-TNIPNVFAVGDVLH 39 (212)
Q Consensus 17 G~I~Vd-~~l-Ts~p~IyA~GD~a~ 39 (212)
|+|.+| .+. |..|++||+|||+.
T Consensus 356 GGi~~~~~~~~t~i~GLfAaGe~~~ 380 (562)
T COG1053 356 GGIPTNTGRVETKIPGLFAAGEAAG 380 (562)
T ss_pred CCEeecccccccCCCCeEECceecc
Confidence 669999 566 89999999999995
No 123
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=76.73 E-value=3.9 Score=38.66 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=33.1
Q ss_pred CCceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCCCCCch-hHHHHHHHHHHHHHHhCC
Q psy11186 16 NAKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL-TPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 16 ~G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l-~~~A~~~g~~aa~nl~g~ 73 (212)
.|+|.+|+.+ +.+|++||+|.|+-. ++......... .-.|.-.||+|++++.+.
T Consensus 508 ~GGl~in~~~qVLd~~g~pIpGLYAAGe~~Gg----~~g~~Y~g~G~slg~a~~fGriAG~~aa~~ 569 (584)
T PRK12835 508 SGGLRTDEHARVLREDDSVIPGLYAVGNTSAS----VMGRSYAGAGATIGPAMTFGYVAARHAAAV 569 (584)
T ss_pred CcCccCCCCceEECCCCCCccceeeeeecccc----cccCCCCcCccchHHHHHHHHHHHHHHHHh
Confidence 3557777664 358999999998730 11110000112 346788899999998764
No 124
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=75.43 E-value=4.8 Score=37.22 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=31.7
Q ss_pred CCceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCCCCC--chhHHHHHHHHHHHHHHhC
Q psy11186 16 NAKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQEKP--ELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 16 ~G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~~~~--~l~~~A~~~g~~aa~nl~g 72 (212)
.|+|.||+++ +.+|++||+|.|+. + ++.. ... .-.-.+.-.||+|++++..
T Consensus 442 ~GGl~in~~~qVld~~g~pI~GLYAaGe~~g--g--~~g~--~~~~G~~l~~~~~~GriAg~~aa~ 501 (506)
T PRK06481 442 MGGVKINTNTEVLKKDGSPITGLYAAGEVTG--G--LHGE--NRIGGNSVADIIIFGRQAGTQSAE 501 (506)
T ss_pred ccCeEECCCceEEcCCCCEeCCeeeceeccc--c--CCCC--CCCchhhHHHHHHHHHHHHHHHHH
Confidence 3557777775 36999999999973 0 1100 011 1123577788888888764
No 125
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=75.22 E-value=6.5 Score=36.89 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=33.0
Q ss_pred CCceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHhCC
Q psy11186 16 NAKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQEKPE-LTPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 16 ~G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~-l~~~A~~~g~~aa~nl~g~ 73 (212)
.|++.+|+++ ..+|++||+|.++.- ++......+. ....|.-.||+|++++.++
T Consensus 495 ~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg----~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 495 KGGLRTDVRGRVLRDDGSVIEGLYAAGNVSAP----VMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred CCCceECCCceEECCCCCCcCCceeccccccc----cccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 3557777665 358999999999730 1110000011 2346788899999998653
No 126
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=75.08 E-value=7.4 Score=36.52 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=34.6
Q ss_pred CCceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCCCCC-chhHHHHHHHHHHHHHHhCCCC
Q psy11186 16 NAKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQEKP-ELTPVAVQAGKLLAARLYGNGT 75 (212)
Q Consensus 16 ~G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~~~~-~l~~~A~~~g~~aa~nl~g~~~ 75 (212)
.|++.||+++ ..+|++||+|.|+. + ++....-.+ .-...|.-.||+|++++.+..+
T Consensus 488 ~GGl~in~~~qVld~~g~pIpGLYAAG~~~g--g--~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~ 551 (557)
T PRK12844 488 SGGLLTDEHARVLREDGSVIPGLYATGNCTA--S--VMGRTYPGAGASIGNSFVFGYIAALHAAGARS 551 (557)
T ss_pred CCCccCCCCceEECCCCCCccceeecccccc--c--cccCCCCcCccchHHHHHHHHHHHHHHHhccC
Confidence 3557777665 24899999999873 0 111100000 1234688899999999986543
No 127
>PRK12839 hypothetical protein; Provisional
Probab=72.36 E-value=8.4 Score=36.33 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=33.2
Q ss_pred CCceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCCCCC-chhHHHHHHHHHHHHHHhCC
Q psy11186 16 NAKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQEKP-ELTPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 16 ~G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~~~~-~l~~~A~~~g~~aa~nl~g~ 73 (212)
.|+|.+|+++ +.+|++||+|.|+.- ++....... .-...|+-.||+|++++...
T Consensus 506 ~GGl~in~~~qVLd~dg~pIpGLYAAG~~~gg----~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~ 567 (572)
T PRK12839 506 FAGLVADGKSRVLRDDDTPIDGLYAAGNDQAS----VMGGHYPSGGINLGPAMTFGYIAGRELAGS 567 (572)
T ss_pred CCCccCCCCceEECCCCCCcCCceeccccccc----cccCCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 3557777664 358999999998730 111100000 12346888999999998754
No 128
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=71.94 E-value=9.5 Score=35.99 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=32.8
Q ss_pred CCceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHhCCC
Q psy11186 16 NAKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQEKPE-LTPVAVQAGKLLAARLYGNG 74 (212)
Q Consensus 16 ~G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~-l~~~A~~~g~~aa~nl~g~~ 74 (212)
.|++.||+.+ +.+|++||+|.|+. + ++........ -...|.-.||+|++++.+..
T Consensus 509 ~GGl~id~~~qVld~~g~pIpGLYAaG~~~g--g--~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 509 FAGLKTDADARVLDQAGQPIPGLYAAGNDMA--S--VMGGFYPSGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred CCCccCCCCCceECCCCCCcCcceecccccc--c--cccCCcCCcchhHHHHHHHHHHHHHHHhhcC
Confidence 3456666654 35899999998762 0 1110000001 23467888999999997643
No 129
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=71.07 E-value=9.2 Score=35.99 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=32.0
Q ss_pred CCceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHhCC
Q psy11186 16 NAKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQEKPE-LTPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 16 ~G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~-l~~~A~~~g~~aa~nl~g~ 73 (212)
.|++.+|+.+ +.+|++||+|.|+.- ++........ ..-.|.-.||+|++++...
T Consensus 505 ~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg----~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 566 (574)
T PRK12842 505 FDGLRTDVTGEVLDADGTPIAGLYAVGNDRAS----IMGGNYPGAGITLGPIMTFGYITGRHLAGV 566 (574)
T ss_pred CCCcCCCCCceEECCCCCCcCCceeccccccc----CccCCCCCCcccHHHHHHHHHHHHHHHHhh
Confidence 3557777664 358999999988730 1110000001 2345788888988888643
No 130
>PRK07121 hypothetical protein; Validated
Probab=70.15 E-value=11 Score=34.68 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=33.0
Q ss_pred CCceecCCC-C-------CCCCCeEEcCccCC-CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCC
Q psy11186 16 NAKIDSDNE-Q-------TNIPNVFAVGDVLH-FSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 16 ~G~I~Vd~~-l-------Ts~p~IyA~GD~a~-~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~ 73 (212)
.|+|.||++ + +-+|++||+|.|+. +.+ .+...| .-.-.|.-.||+|++++.++
T Consensus 429 ~GGl~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g---~~y~~G--~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 429 LGGLRVDEDTGEVLRADGAPIPGLYAAGRCASGIAS---NGYVSG--LSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred ccCeeECCCcceEECCCCCCcCceEecccccccCCC---CCCCCc--cccchhHHHHHHHHHHHHhh
Confidence 456888887 5 24899999999873 100 000001 12245788899999988653
No 131
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=69.07 E-value=34 Score=23.47 Aligned_cols=68 Identities=6% Similarity=0.074 Sum_probs=41.4
Q ss_pred eEEEcCCceeeecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHHHH
Q psy11186 85 TTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQG 164 (212)
Q Consensus 85 ~~~~~~~~ia~vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i~~ 164 (212)
|+--.+..+..+|..... +++.+. . . ..+..++-++++ +++++|+..++. ...+..
T Consensus 3 WSdQ~~~~iq~~G~~~~~-------~~~v~r-g----------~-~~~~~~~~~y~~---~g~lva~~~vn~--~~~~~~ 58 (85)
T PF14759_consen 3 WSDQYGVRIQIAGLPGGA-------DEVVVR-G----------D-PESGKFVAFYLR---DGRLVAAVSVNR--PRDLRA 58 (85)
T ss_dssp EEEETTEEEEEEE-STTS-------SEEEEE-E----------E-TTTTEEEEEEEE---TTEEEEEEEES---HHHHHH
T ss_pred ecccCCCeEEEEECCCCC-------CEEEEE-c----------c-CCCCcEEEEEEc---CCEEEEEEecCC--HHHHHH
Confidence 344456788899985431 222221 1 1 124667767776 899999999998 456677
Q ss_pred HHHHHHCCCCHH
Q psy11186 165 YAAAVKCGLTFE 176 (212)
Q Consensus 165 ~~~ai~~~~t~~ 176 (212)
+..+|+.+..++
T Consensus 59 ~rrli~~~~~~~ 70 (85)
T PF14759_consen 59 ARRLIAAGARVD 70 (85)
T ss_dssp HHHHHHTT-B--
T ss_pred HHHHHHCCCCcC
Confidence 889999987664
No 132
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=66.41 E-value=12 Score=35.25 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=32.5
Q ss_pred CCceecCCCC-------CCCCCeEEcCccCCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHhCC
Q psy11186 16 NAKIDSDNEQ-------TNIPNVFAVGDVLHFSPFPVLPLFQEKPE-LTPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 16 ~G~I~Vd~~l-------Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~-l~~~A~~~g~~aa~nl~g~ 73 (212)
.|++.||+++ +.+|++||+|.++. + ++........ ..-.|.-.||+|++++.+.
T Consensus 510 ~GGl~in~~~qVld~dg~pIpGLYAaG~~~g--g--~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 571 (578)
T PRK12843 510 ATGLVTDASARVLNADGQPISGLYACGNDMA--S--IMGGTYPGPGITLGPAIVFAYLAARHAAKR 571 (578)
T ss_pred CCCccCCCCceEECCCCCCcCCceecccccc--c--cccCCCCCcccchHHHHHHHHHHHHHHHHh
Confidence 3557777664 35899999997763 0 1111100011 2345788899999988754
No 133
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=62.33 E-value=15 Score=34.26 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=36.2
Q ss_pred cccCCeeccCCCceecC-CCC----CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q psy11186 6 SNAGVKVIPENAKIDSD-NEQ----TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAAR 69 (212)
Q Consensus 6 ~~~gl~~~~~~G~I~Vd-~~l----Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~n 69 (212)
+-.||+.+ +.|+++.. ..| |+.++||.+|=|. .|.-.+.++.||..||..
T Consensus 485 ~iLgL~~~-~~gF~k~~hPkl~pv~s~~~GIflAG~aq-------------gPkdI~~siaqa~aAA~k 539 (622)
T COG1148 485 KILGLSQD-EDGFLKEAHPKLRPVDSNRDGIFLAGAAQ-------------GPKDIADSIAQAKAAAAK 539 (622)
T ss_pred HhcCcccC-CCCccccCCCCcccccccCCcEEEeeccc-------------CCccHHHHHHHhHHHHHH
Confidence 34689998 79998876 445 7889999999765 456666666666666543
No 134
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=62.13 E-value=8.1 Score=34.95 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=30.0
Q ss_pred CCceecC---C-CC--CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q psy11186 16 NAKIDSD---N-EQ--TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAAR 69 (212)
Q Consensus 16 ~G~I~Vd---~-~l--Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~n 69 (212)
.|+|.++ . .| ...|++|++|.+.+. |...|++ -.++|+..|.+|+.|
T Consensus 357 ~GGV~~~eid~~TmeSk~~~gLyf~GEvLDv------dG~~GGY-NLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 357 AGGVDLKEIDPKTMESKLVPGLYFAGEVLDV------DGPCGGY-NLQWAWSSGYLAGKY 409 (409)
T ss_dssp EEEE-GGGB-TTT-BBSSSTTEEE-GGGBSE------EE-TTTH-HHHHHHHHHHHHHH-
T ss_pred CCCcCHHHCCHhhhcccCCCCeEEEEEEEEe------ccCcCch-hHhHHHHHHHHhhCC
Confidence 3568764 3 36 569999999999963 2223443 458899999998875
No 135
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=56.64 E-value=12 Score=33.42 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=32.7
Q ss_pred CCceec---CCCC--CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 16 NAKIDS---DNEQ--TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 16 ~G~I~V---d~~l--Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.|+|.+ |..| .-+|++|.+|.+.+. |...|++ -.++|+..|.+|+.++.
T Consensus 319 ~GGV~~~EI~~~~~Sk~~pgLYf~GEvLDv------dG~~GGY-NLq~AwsSG~~AG~~~~ 372 (376)
T TIGR03862 319 AGGVRQDALDESLMLKARPGVFCAGEMLDW------EAPTGGY-LLTACFATGRAAGRGVH 372 (376)
T ss_pred CCcccHHHcChhhhcccCCCeEEEEEEEee------ccCCCCH-HHHHHHHHHHHHHHHHH
Confidence 355655 4445 569999999999963 2223543 34778888888887653
No 136
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=55.88 E-value=15 Score=35.15 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=27.8
Q ss_pred cCCCC-CC-CCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 21 SDNEQ-TN-IPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 21 Vd~~l-Ts-~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.+..| |. +|++|.+|++. |...+ ..|..+|-+|+.|+.
T Consensus 348 l~~~le~k~~~gLf~AGqi~------------Gt~Gy-~eAaa~Gl~Ag~naa 387 (617)
T TIGR00136 348 LKPTLETKLIQGLFFAGQIN------------GTTGY-EEAAAQGLMAGINAA 387 (617)
T ss_pred CchhheeCCCCCeEEccccC------------CcchH-HHHHHHHHHHHHHHH
Confidence 34677 64 89999999977 43333 378888888888875
No 137
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=55.87 E-value=17 Score=20.32 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHhhcc
Q psy11186 159 GEVIQGYAAAVKCGLTFETLESTV 182 (212)
Q Consensus 159 ~~~i~~~~~ai~~~~t~~~l~~~~ 182 (212)
.|.+..+..|+..|+|++++.+.+
T Consensus 3 ~EW~~Li~eA~~~Gls~eeir~FL 26 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEEIREFL 26 (30)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 367888999999999999998743
No 138
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=52.02 E-value=7.5 Score=34.96 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=18.7
Q ss_pred CCceecCCCC-C------CCCCeEEcCccCC
Q psy11186 16 NAKIDSDNEQ-T------NIPNVFAVGDVLH 39 (212)
Q Consensus 16 ~G~I~Vd~~l-T------s~p~IyA~GD~a~ 39 (212)
.|+|.||+++ . .+|++||+|.|+.
T Consensus 384 ~GGl~~d~~~~vl~~~g~~IpGLyAaG~~~g 414 (439)
T TIGR01813 384 MGGVKINTKAEVLDAQGKPIPGLFAAGEVTG 414 (439)
T ss_pred ccCeEECCCCeEECCCCCEecccEEeeeccc
Confidence 3568888776 3 5999999999883
No 139
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=50.92 E-value=18 Score=33.08 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=27.9
Q ss_pred cCCCC-C-CCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 21 SDNEQ-T-NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 21 Vd~~l-T-s~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
.++.| + ..|++|.+|.+. |.-.. ..|..+|.+|+.|+..
T Consensus 321 l~~~l~~k~~~~l~~AGqi~------------g~~Gy-~ea~a~G~~Ag~n~~~ 361 (436)
T PRK05335 321 LDPTLQLKKRPNLFFAGQIT------------GVEGY-VESAASGLLAGINAAR 361 (436)
T ss_pred CchhccccCCCCEEeeeeec------------CchHH-HHHHHHHHHHHHHHHH
Confidence 35667 4 689999999988 32112 2788888888888763
No 140
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=49.98 E-value=22 Score=32.13 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=25.5
Q ss_pred CCCC-C-CCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 22 DNEQ-T-NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 22 d~~l-T-s~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+..| | ..|++|++|+.+ |... -..|..||-+|+.|+.
T Consensus 347 ~~~l~~k~~~~lf~AGqi~------------G~~G-y~eaaa~G~~ag~na~ 385 (392)
T PF01134_consen 347 LNTLETKKIPGLFFAGQIN------------GTEG-YEEAAAQGLIAGINAA 385 (392)
T ss_dssp BTTSBBSSSBTEEE-GGGG------------TB-S-HHHHHHHHHHHHHHHH
T ss_pred ccceEECCCCCceECCCCc------------chhH-HHHHHHHHHHHHHHHH
Confidence 4567 5 599999999988 5422 2356668888888875
No 141
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=49.01 E-value=35 Score=35.14 Aligned_cols=40 Identities=23% Similarity=0.116 Sum_probs=22.5
Q ss_pred CCCCeEEcCccCCCCCCCCCCCCC-CCCchhHHHHHHHHHHHHHHh
Q psy11186 27 NIPNVFAVGDVLHFSPFPVLPLFQ-EKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 27 s~p~IyA~GD~a~~~~~~~~~~~~-~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.+|++||+|.|+.- ++.... ++ .-...+.-.||+|++++.
T Consensus 859 pIpGLYAAGe~~gg----~~g~~y~gG-~sl~~a~~fGriAG~~aa 899 (1167)
T PTZ00306 859 PILGLFGAGEVTGG----VHGGNRLGG-NSLLECVVFGKIAGDRAA 899 (1167)
T ss_pred eeCceEecceeccc----cccCCCCch-hhHHHHHHHHHHHHHHHH
Confidence 58999999999730 111000 11 112346667777777665
No 142
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=47.91 E-value=23 Score=32.48 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=26.0
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARL 70 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl 70 (212)
|..||+|.+||-.. ++=|....-|.+.|+.||+.+
T Consensus 439 t~~~~l~lAGD~t~----------~~~pas~egAv~sG~~aA~~i 473 (474)
T TIGR02732 439 TPISNFFLAGSYTQ----------QDYIDSMEGATLSGRQAAAAI 473 (474)
T ss_pred CCCCCeEEeccccc----------cCchHHHhHHHHHHHHHHHHh
Confidence 77899999999884 121334456999999999865
No 143
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=47.33 E-value=27 Score=31.81 Aligned_cols=46 Identities=26% Similarity=0.326 Sum_probs=28.8
Q ss_pred eecCCCC-C-----CCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy11186 19 IDSDNEQ-T-----NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARL 70 (212)
Q Consensus 19 I~Vd~~l-T-----s~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl 70 (212)
|.||++| . -.+|+||+|-+.. .+|....++. .=+|+..|-.||++|
T Consensus 367 V~~d~~lrp~~~g~~~~Nl~a~G~vL~-----G~d~~~~gcG-~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 367 VKTDAQLRPSRGGQTIENLYAIGAVLG-----GYDPIFEGCG-SGVAVSTALHAAEQI 418 (419)
T ss_pred ceEccccCccCCCcccccceEechhhc-----CCChHhcCCC-chhHHHHHHHHHHhh
Confidence 6666665 2 2899999999985 4444322221 126777777777765
No 144
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=46.35 E-value=35 Score=29.84 Aligned_cols=49 Identities=14% Similarity=-0.053 Sum_probs=34.8
Q ss_pred CCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 16 NAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 16 ~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.|.|.+.... ...++|..+||.+. ..++.+| .-...|.++|+.+|+.+.
T Consensus 248 ~~~iP~~~~~~~~~~rv~liGdAAg-----~~~P~tG--~Gi~~al~~a~~la~~l~ 297 (388)
T TIGR01790 248 WGALPVGLPGPFLPQRVAAFGAAAG-----MVHPTTG--YSVARALSDAPGLAAAIA 297 (388)
T ss_pred eEEEecccCCCccCCCeeeeechhc-----CcCCccc--ccHHHHHHHHHHHHHHHH
Confidence 4555555554 45578999999996 5555555 355788999999998874
No 145
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=46.05 E-value=26 Score=28.92 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=26.6
Q ss_pred CCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q psy11186 27 NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAAR 69 (212)
Q Consensus 27 s~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~n 69 (212)
..++|+.+||.++ ..++..| +-...|++.|.+||.-
T Consensus 259 ~~~~v~liGDAA~-----~~~P~~g--~G~~~a~~~a~~aa~~ 294 (295)
T TIGR02032 259 VRGNVLLVGDAAG-----HVKPLTG--EGIYYAMRSGDVAAEV 294 (295)
T ss_pred ccCCEEEEecccC-----CCCCccC--CcHHHHHHHHHHHHhh
Confidence 5688999999997 4444443 3567899999888864
No 146
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=44.42 E-value=19 Score=32.56 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=33.3
Q ss_pred Cceec---CCC-C--CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 17 AKIDS---DNE-Q--TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 17 G~I~V---d~~-l--Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
|+|.+ |.. | ...|++|.||.+.+.+ ..+|+ -..+.|...|.+|++.+..
T Consensus 351 GGV~~~eid~kTmesk~vPGLyf~GEvlDv~------g~tGG-YN~q~A~asG~~Ag~~~~~ 405 (408)
T COG2081 351 GGVDTKEIDSKTMESKKVPGLYFAGEVLDVT------GWTGG-YNFQWAWASGWAAGQGAAA 405 (408)
T ss_pred CceehhhcCHHHHHhhcCCCcEEEEEEEEec------cCCCc-HHHHHHHHHHHHHHHhhhh
Confidence 44555 443 5 6899999999999733 22344 3457788888888877654
No 147
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=43.26 E-value=36 Score=30.32 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=27.3
Q ss_pred CCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 27 NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 27 s~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
-.+++..+||++. ..++.+| .=...|++.|++||+.+.
T Consensus 268 ~~~~~llvGDAAg-----~v~P~tG--eGI~~A~~sg~~aa~~i~ 305 (398)
T TIGR02028 268 VVGRVALVGDAAG-----YVTKCSG--EGIYFAAKSGRMCAEAIV 305 (398)
T ss_pred ECCCEEEEEcCCC-----CCCcccc--cchHHHHHHHHHHHHHHH
Confidence 3578999999996 4455554 245678888888888775
No 148
>PRK11445 putative oxidoreductase; Provisional
Probab=42.45 E-value=38 Score=29.45 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=29.4
Q ss_pred CCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCC
Q psy11186 28 IPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 28 ~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~ 73 (212)
.++|+.+||++. ..++.+| .-...|.+.|..+|+.+...
T Consensus 263 ~~~vvlVGDAAg-----~i~P~tG--~Gi~~al~sa~~la~~l~~~ 301 (351)
T PRK11445 263 KDNAFLIGEAAG-----FISPSSL--EGISYALDSARILSEVLNKQ 301 (351)
T ss_pred CCCEEEEEcccC-----ccCCccC--ccHHHHHHhHHHHHHHHHhc
Confidence 478999999997 4444444 34578999999999988654
No 149
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=41.84 E-value=17 Score=27.20 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHhhcccCCCCchhhHHHHHhh
Q psy11186 159 GEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198 (212)
Q Consensus 159 ~~~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~ 198 (212)
.+++-.+..|+..|.|++++.+....+|.|=+-+..+...
T Consensus 10 d~Rlf~i~eAlrrG~sveeI~e~T~ID~wFL~~i~~Iv~~ 49 (123)
T PF02787_consen 10 DERLFAIAEALRRGYSVEEIHELTKIDPWFLEQIKNIVDM 49 (123)
T ss_dssp TTHHHHHHHHHHTTB-HHHHHHHH---HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHHHHHHHH
Confidence 3677888999999999999999999999998888887543
No 150
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=41.26 E-value=51 Score=28.81 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=27.5
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+..++||.+||-... +-+....-|...|+.+|+.++
T Consensus 383 ~~~~~l~~aGd~~~~----------~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 383 TPWPNLFLAGDWTAT----------GWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred CCcCCEEEecccccC----------CCcchHHHHHHHHHHHHHHHh
Confidence 667899999998741 223466779999999998875
No 151
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=40.54 E-value=43 Score=29.54 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=26.1
Q ss_pred CCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 28 IPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 28 ~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
..+++.+||.+. ..++.+| .=...|+..|+.+|+.+.
T Consensus 263 ~~~v~lvGDAAg-----~v~P~tG--~GI~~A~~sg~~aa~~i~ 299 (388)
T TIGR02023 263 FGRAMLVGDAAG-----LVTPASG--EGIYFAMKSGQMAAQAIA 299 (388)
T ss_pred CCCEEEEecccc-----CcCCccc--ccHHHHHHHHHHHHHHHH
Confidence 467999999997 4445444 245677777877777765
No 152
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=38.46 E-value=49 Score=29.38 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=27.3
Q ss_pred CCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 28 IPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 28 ~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
.++++.+||++- ..++.+|+ =.+.|+..|++||+.+..
T Consensus 268 ~~~~~lvGDAAg-----~v~p~~g~--Gi~~A~~sg~~Aa~~i~~ 305 (396)
T COG0644 268 GDGVLLVGDAAG-----FVNPLTGE--GIRYAIKSGKLAAEAIAE 305 (396)
T ss_pred cCCEEEEecccc-----CCCCcccC--cHHHHHHHHHHHHHHHHH
Confidence 478999999995 34444442 356788888888887764
No 153
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=34.25 E-value=1.1e+02 Score=23.25 Aligned_cols=81 Identities=23% Similarity=0.381 Sum_probs=52.2
Q ss_pred ecCCHHHHHHhhCCCCEEEEEEeeccccccccCCCCCceEEEEEEecCCCCeEEEEEEECccHHHHHHHHHHHHHCCCCH
Q psy11186 96 VGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTF 175 (212)
Q Consensus 96 vGlt~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~g~ilGa~~vg~~a~~~i~~~~~ai~~~~t~ 175 (212)
+|.+.++..+.+|. -.++....+ +..|+.-..+ ...|+.+-++ ++++++.-..|+... ..-++-|.+.
T Consensus 1 IG~s~~~v~~~~G~-P~R~~~s~y-gy~w~vY~~~-~~~y~~vgv~---~~kV~~lyt~~~~~~------~~p~kiG~s~ 68 (141)
T PF14504_consen 1 IGKSKEEVEEKLGE-PDRIDPSEY-GYEWWVYNQD-DYQYVQVGVK---DGKVVALYTNGNDIN------VSPFKIGMSK 68 (141)
T ss_pred CCCCHHHHHHHcCC-ccEeecCCC-CcEEEEEcCC-CCcEEEEEEE---CCEEEEEEECCcccc------cCCeecCCCH
Confidence 47888888877662 233222112 3345544432 3348888887 799999999998532 2345778999
Q ss_pred HHHhhcccCCCCc
Q psy11186 176 ETLESTVGIHPTL 188 (212)
Q Consensus 176 ~~l~~~~~~~P~~ 188 (212)
+++.+.+...|..
T Consensus 69 ~~v~~~~~~~p~~ 81 (141)
T PF14504_consen 69 SEVFKKLGIEPEF 81 (141)
T ss_pred HHHHHhcCCCccE
Confidence 9999877666653
No 154
>PLN02463 lycopene beta cyclase
Probab=33.94 E-value=99 Score=28.26 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=31.1
Q ss_pred CCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 15 ENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 15 ~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+.|.|..+..+ ....+|.++||.+. ..++.+|. -...+..+|..+|+.+.
T Consensus 279 E~~~IPmg~~~~~~~~~~~~~G~aag-----~v~p~tG~--~i~~~~~~~~~~a~~~~ 329 (447)
T PLN02463 279 EKCVIPMGGPLPVIPQRVLGIGGTAG-----MVHPSTGY--MVARTLAAAPIVADAIV 329 (447)
T ss_pred eeeEeeCCCCCCCCCCCEEEecchhc-----CcCCCccc--cHHHHHHHHHHHHHHHH
Confidence 35666666665 44568999999995 44444442 33456666666666554
No 155
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=33.47 E-value=35 Score=30.45 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCceecCC----CC--CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q psy11186 16 NAKIDSDN----EQ--TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLA 67 (212)
Q Consensus 16 ~G~I~Vd~----~l--Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa 67 (212)
.|+|.++| .| .-+|++|.+|.+.+.. ..+|++ -.++|...|..|+
T Consensus 349 ~GGv~~~ei~~~~m~~k~~~gly~~GE~lDv~------g~~GGy-Nlq~a~~sg~~ag 399 (400)
T TIGR00275 349 AGGVSLKEINPKTMESKLVPGLYFAGEVLDVD------GDTGGY-NLQWAWSSGYLAG 399 (400)
T ss_pred cCcccchhcChhhhhhcCCCCeEEEEEEEecC------CCCCch-HHHHHHHHHHHhc
Confidence 46677653 25 4589999999999732 223443 3578888887765
No 156
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=32.08 E-value=42 Score=28.80 Aligned_cols=46 Identities=20% Similarity=0.096 Sum_probs=34.1
Q ss_pred ecCCCC----CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 20 DSDNEQ----TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 20 ~Vd~~l----Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
.-|.+| ...+++..+||.++ .+++.+|+ --.+|..++.++++.+..
T Consensus 117 MPn~~lp~~~~~~~G~vllGDA~n-----mrHPLTGg--GMTVAl~Dv~lL~~lL~~ 166 (276)
T PF08491_consen 117 MPNSFLPASPNWKPGVVLLGDAAN-----MRHPLTGG--GMTVALNDVVLLRDLLSP 166 (276)
T ss_pred ecccccCCCCCCCCCEEEEehhhc-----CcCCcccc--chhhHHHHHHHHHHHHhh
Confidence 446666 24689999999998 88888874 336788888888776643
No 157
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=31.69 E-value=78 Score=27.11 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=26.2
Q ss_pred CCC-CCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 26 TNI-PNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 26 Ts~-p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+.. ++||-+||-.+. +-+...+-|...|+.||+.++
T Consensus 414 ~~~~~~l~~aG~~~~~----------~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 414 TPIDPGLYFAGDWTSP----------GYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp SCBTTTEEE-SGGGSS----------SSTTSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEeecccCC----------CCCCcHHHHHHHHHHHHHHhC
Confidence 555 799999998841 112467889999999998764
No 158
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=31.34 E-value=64 Score=29.42 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=28.4
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+..++++.+||++. ..++.+| .=...|++.|++||+.+.
T Consensus 306 ~~~~~vlLvGDAAg-----~v~P~tG--eGI~~Am~sg~~AAe~i~ 344 (450)
T PLN00093 306 RVRGRVALVGDAAG-----YVTKCSG--EGIYFAAKSGRMCAEAIV 344 (450)
T ss_pred eeCCCcEEEecccc-----CCCcccc--ccHHHHHHHHHHHHHHHH
Confidence 34578999999996 4455554 245778888888888775
No 159
>PLN02487 zeta-carotene desaturase
Probab=30.13 E-value=77 Score=30.03 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=28.4
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCC-CchhHHHHHHHHHHHHHHhCC
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEK-PELTPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~-~~l~~~A~~~g~~aa~nl~g~ 73 (212)
|..||+|.+||-.. .. |....-|.+.|+.||+.++..
T Consensus 515 T~~~nl~LAGD~t~-----------~~yPat~EgAv~SG~~AA~~i~~~ 552 (569)
T PLN02487 515 TPISNFFLAGSYTK-----------QDYIDSMEGATLSGRQAAAYICEA 552 (569)
T ss_pred CCCCCEEEeCcccc-----------cCCcchHHHHHHHHHHHHHHHHHH
Confidence 88999999999885 23 233345999999999988743
No 160
>PRK07233 hypothetical protein; Provisional
Probab=30.04 E-value=81 Score=27.75 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=27.9
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCC
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~ 73 (212)
+..++||-+||.... ........|...|+.||+.++..
T Consensus 393 ~~~~~l~~aG~~~~~----------~~~~~~~~Ai~sG~~aA~~i~~~ 430 (434)
T PRK07233 393 TPIEGLYLAGMSQIY----------PEDRSINGSVRAGRRVAREILED 430 (434)
T ss_pred cCcCCEEEeCCcccC----------CccCchhHHHHHHHHHHHHHhhh
Confidence 778999999994321 11235678999999999998754
No 161
>PLN02612 phytoene desaturase
Probab=29.82 E-value=68 Score=30.19 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=29.6
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCC
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~ 73 (212)
|..+++|-+||-+.. +-+...+-|...|+.+|+.++..
T Consensus 510 tPi~~l~lAGd~t~~----------~~~~smeGAv~SG~~AA~~I~~~ 547 (567)
T PLN02612 510 SPIEGFYLAGDYTKQ----------KYLASMEGAVLSGKLCAQSIVQD 547 (567)
T ss_pred CccCCEEEeecceeC----------CchhhHHHHHHHHHHHHHHHHHH
Confidence 778999999998741 22346778999999999998743
No 162
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=26.34 E-value=86 Score=28.23 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=25.1
Q ss_pred CCCeEEcCccCCCCCCCCCCCC--CCCCchhHHHHHHHHHHHHHHh
Q psy11186 28 IPNVFAVGDVLHFSPFPVLPLF--QEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 28 ~p~IyA~GD~a~~~~~~~~~~~--~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
-++++++||++. ..++. ++ .=...|+..|+.||+.+.
T Consensus 294 ~~g~llvGDAAg-----~v~p~g~~g--~Gi~~A~~SG~lAAeai~ 332 (428)
T PRK10157 294 GDGVLIAGDAAG-----MCMNLGFTI--RGMDLAIAAGEAAAKTVL 332 (428)
T ss_pred cCCeEEEecccc-----cccccCcee--eeHHHHHHHHHHHHHHHH
Confidence 489999999996 22221 11 234678888888888765
No 163
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=25.29 E-value=1.4e+02 Score=27.30 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=27.2
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCCC
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNG 74 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~~ 74 (212)
|..+++|-+|+.+. + | .-++.+...|+.+|+.|+++.
T Consensus 456 t~i~gLyl~G~~~~-p---------G--~Gv~g~~~sg~~~a~~il~~~ 492 (502)
T TIGR02734 456 RKIDNLYLVGAGTH-P---------G--AGVPGVLGSAKATAKLMLGDL 492 (502)
T ss_pred CCCCCEEEeCCCCC-C---------C--CCHHHHHHHHHHHHHHHHhhc
Confidence 67899999999874 1 1 123556678999999988654
No 164
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=24.80 E-value=82 Score=27.39 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=27.2
Q ss_pred CCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 27 NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 27 s~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
..++|+.+||+++ ..++..| +-...|++.|..+|..+.
T Consensus 278 ~~~rv~liGDAAh-----~~~P~~G--qG~n~ai~da~~La~~L~ 315 (388)
T PRK07608 278 VAPRVALVGDAAH-----LIHPLAG--QGMNLGLRDVAALADVLA 315 (388)
T ss_pred hcCceEEEecccc-----ccCCccc--cccchhHHHHHHHHHHHH
Confidence 3578999999997 3333333 245678889988888775
No 165
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=23.88 E-value=1.1e+02 Score=27.59 Aligned_cols=36 Identities=36% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+..++||-+||-... +-+....-|+..|+.||++++
T Consensus 418 ~p~~~l~~AG~~~a~----------~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 418 TPIPNFFLAGDYTKQ----------KYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred CccCCEEEeehhccC----------cccccHHHHHHHHHHHHHHhC
Confidence 678999999987641 223366789999999998763
No 166
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=23.78 E-value=86 Score=26.31 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=24.7
Q ss_pred CCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 28 IPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 28 ~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
..+|..+||+++ ..++..| +=...|++.|..+|..|.
T Consensus 290 ~grv~LiGDAAh-----~~~P~~G--qG~n~Ai~da~~La~~L~ 326 (356)
T PF01494_consen 290 KGRVLLIGDAAH-----AMDPFSG--QGINMAIEDAAALAELLA 326 (356)
T ss_dssp ETTEEE-GGGTE-----EE-CCTS--HHHHHHHHHHHHHHHHHH
T ss_pred cceeEEecccee-----eeccccc--CCCCcccccHHHHHHHHH
Confidence 358999999997 3333333 345678888888887664
No 167
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=23.07 E-value=1.2e+02 Score=27.73 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=26.5
Q ss_pred CCCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhCC
Q psy11186 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGN 73 (212)
Q Consensus 26 Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g~ 73 (212)
|..+|+|-+|+.+. + | .-++.+...|+.+|+.|+++
T Consensus 456 t~i~gLyl~G~~~~-p---------G--~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 456 TAIPGLYCVGDSCF-P---------G--QGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred CCCCCeEEecCcCC-C---------C--CCHHHHHHHHHHHHHHHHhh
Confidence 78999999999884 1 1 13355677888999888753
No 168
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=22.82 E-value=1e+02 Score=26.65 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=26.1
Q ss_pred CCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 28 IPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 28 ~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.++|..+||+++ ..++..| +=...|++.|..+|..+.
T Consensus 275 ~~~v~LiGDAah-----~~~P~~G--~G~~~Ai~da~~La~~L~ 311 (385)
T TIGR01988 275 APRLALIGDAAH-----TIHPLAG--QGLNLGLRDVAALAEVLE 311 (385)
T ss_pred cCceEEEecccc-----cCCcccc--chhhhhHHHHHHHHHHHH
Confidence 478999999997 3344333 235678888888887764
No 169
>PRK05320 rhodanese superfamily protein; Provisional
Probab=22.49 E-value=1.2e+02 Score=25.48 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=36.5
Q ss_pred EEEEEECccHHHHHHHHHHHHHCCCCHHHHhh--cccCCCCchh----hHHHHH
Q psy11186 149 LGMHFIGPNAGEVIQGYAAAVKCGLTFETLES--TVGIHPTLAE----EFTRVT 196 (212)
Q Consensus 149 lGa~~vg~~a~~~i~~~~~ai~~~~t~~~l~~--~~~~~P~~~e----~~~~~~ 196 (212)
+-+++-|+ .+.|+.++.+|+.+.++++|.. .+.+.|+|.. ...++.
T Consensus 44 iN~t~~g~--~~~id~~~~~l~~~~~~~dl~~k~~~~~~~pF~~l~vk~k~eiv 95 (257)
T PRK05320 44 INLFLAGT--REAIDAFYAWLRADARFADLQVKESLSDSQPFRRMLVKLKREII 95 (257)
T ss_pred ceEEEEee--HHHHHHHHHHHhhCCCccCceeecccccCCCchhccchhhhHHh
Confidence 36788888 6899999999999999999887 4677888887 555543
No 170
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=22.37 E-value=2e+02 Score=18.03 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=15.1
Q ss_pred HHHHHHHHCCCCHHHHhhcccCCCCchhh
Q psy11186 163 QGYAAAVKCGLTFETLESTVGIHPTLAEE 191 (212)
Q Consensus 163 ~~~~~ai~~~~t~~~l~~~~~~~P~~~e~ 191 (212)
..+..++..|.+.+++.+. ||+++..
T Consensus 22 ~~i~~~~~~G~s~eeI~~~---yp~Lt~~ 47 (56)
T PF04255_consen 22 RDILDLLAAGESPEEIAED---YPSLTLE 47 (56)
T ss_dssp HHHHHHHHTT--HHHHHHH---STT--HH
T ss_pred HHHHHHHHcCCCHHHHHHH---CCCCCHH
Confidence 3344455999999999987 6655543
No 171
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=22.22 E-value=97 Score=27.10 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=26.6
Q ss_pred CCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 27 NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 27 s~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
...+|+.+||+++ ..++..| +=...|++.|..+|..+.
T Consensus 278 ~~grv~LvGDAAH-----~~~P~~G--qG~n~ai~Da~~La~~L~ 315 (403)
T PRK07333 278 VAPRFALVGDAAH-----GIHPIAG--QGLNLGLKDVAALAEVVV 315 (403)
T ss_pred cCCCEEEEechhh-----cCCCccc--cchhhhHHHHHHHHHHHH
Confidence 3578999999997 3334333 235678888888887764
No 172
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=22.00 E-value=1.1e+02 Score=26.44 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=26.1
Q ss_pred CCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 28 IPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 28 ~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
.++|+.+||+++ ..++..| +=...|++.|..++..+.
T Consensus 275 ~~rv~LvGDAAh-----~~~P~~G--qG~~~al~Da~~La~~L~ 311 (382)
T TIGR01984 275 HPRVVLIGNAAQ-----TLHPIAG--QGFNLGLRDVETLAEVLI 311 (382)
T ss_pred cCCEEEEeeccc-----ccCCccc--cchhhhHHHHHHHHHHHH
Confidence 478999999997 3333333 245678888888887764
No 173
>PLN02697 lycopene epsilon cyclase
Probab=21.87 E-value=1.4e+02 Score=28.04 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=29.5
Q ss_pred CCCceecCCCC-CCCCCeEEcCccCCCCCCCCCCCCCCCCch---hHHHHHHHHHHHHHH
Q psy11186 15 ENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPEL---TPVAVQAGKLLAARL 70 (212)
Q Consensus 15 ~~G~I~Vd~~l-Ts~p~IyA~GD~a~~~~~~~~~~~~~~~~l---~~~A~~~g~~aa~nl 70 (212)
+.|.|.++..+ ...++|.++||.+. ..++.+|- .+ ...|...|.++|+.+
T Consensus 357 E~g~iPm~g~~~~~~~~vl~vG~AAG-----~vhPsTGy-~v~~~l~~A~~~A~~ia~~l 410 (529)
T PLN02697 357 EWSYIPVGGSLPNTEQKNLAFGAAAS-----MVHPATGY-SVVRSLSEAPKYASVIARIL 410 (529)
T ss_pred EeeeecCCCCCcccCCCeeEeehhhc-----CCCCchhh-hHHHHHHhHHHHHHHHHHHh
Confidence 46777776666 33578999999996 44555542 11 123444444454444
No 174
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=21.80 E-value=1.3e+02 Score=26.50 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=26.9
Q ss_pred CCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 27 NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 27 s~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
..++|..+||+++ ..++..| +=...|++.|..++..+.
T Consensus 292 ~~~rv~LvGDAAh-----~~~P~~G--qG~n~al~DA~~La~~L~ 329 (415)
T PRK07364 292 VQHRLALVGDAAH-----CCHPVGG--QGLNLGIRDAAALAQVLQ 329 (415)
T ss_pred cCCcEEEEecccc-----cCCCccc--ccHhHHHHHHHHHHHHHH
Confidence 3578999999997 3333333 345678888888888764
No 175
>PRK07045 putative monooxygenase; Reviewed
Probab=21.52 E-value=1.5e+02 Score=25.94 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=26.7
Q ss_pred CCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHh
Q psy11186 27 NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71 (212)
Q Consensus 27 s~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~ 71 (212)
+..+|..+||+++ ..++..| +=...|++.|..+|..+.
T Consensus 283 ~~grv~LiGDAAH-----~~~P~~G--qG~n~ai~Da~~La~~L~ 320 (388)
T PRK07045 283 HKRNVVLLGDAAH-----SIHPITG--QGMNLAIEDAGELGACLD 320 (388)
T ss_pred cCCCEEEEEcccc-----ccCCCcc--ccHHHHHHHHHHHHHHHH
Confidence 4578999999997 3333322 235678888888888774
No 176
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=20.04 E-value=97 Score=26.96 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=24.7
Q ss_pred CCCCeEEcCccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhC
Q psy11186 27 NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72 (212)
Q Consensus 27 s~p~IyA~GD~a~~~~~~~~~~~~~~~~l~~~A~~~g~~aa~nl~g 72 (212)
..-.+|++||... | ..+.-|...|..+|.+|+.
T Consensus 297 ~~~~l~~cGDwc~-----------G--grVEgA~LSGlAaA~~i~~ 329 (331)
T COG3380 297 RELPLYACGDWCA-----------G--GRVEGAVLSGLAAADHILN 329 (331)
T ss_pred CCCceeeeccccc-----------C--cchhHHHhccHHHHHHHHh
Confidence 3457999999885 4 4667788888888888763
Done!