RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11186
(212 letters)
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 262 bits (670), Expect = 5e-86
Identities = 110/207 (53%), Positives = 149/207 (71%), Gaps = 13/207 (6%)
Query: 7 NAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
N GVK+ + KI +D EQTN+P ++AVGD+L ++KPELTPVA+QAG+L
Sbjct: 288 NVGVKINKKTGKIPADEEEQTNVPYIYAVGDIL-----------EDKPELTPVAIQAGRL 336
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
LA RL+ T DY+NV TTVFTPLEYG GLSEEKA E +G +N+E++H+Y+ P E+
Sbjct: 337 LAQRLFKGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENVEVFHSYFWPLEWT 396
Query: 126 IPQR-NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 184
IP R N +CY K+VC + ++V+G H +GPNAGEV QG+AAA++CGLT + L++T+GI
Sbjct: 397 IPSRDNHNKCYAKLVCNKKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGI 456
Query: 185 HPTLAEEFTRVTITKRSGEDPTPQSCC 211
HP AE FT +++TKRSG+D Q CC
Sbjct: 457 HPVCAEVFTTLSVTKRSGQDILQQGCC 483
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 182 bits (464), Expect = 3e-55
Identities = 83/205 (40%), Positives = 117/205 (57%), Gaps = 25/205 (12%)
Query: 13 IPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72
+ ++ KI + N+ TNIPN+FAVGDV+ + +PELTPVA++AG LLA RL+
Sbjct: 292 VNKSNKIIAPNDCTNIPNIFAVGDVV-----------EGRPELTPVAIKAGILLARRLFK 340
Query: 73 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRN-- 130
+DY + TT+FTP+EYG G S E A YG D++E Y + E R
Sbjct: 341 QSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKH 400
Query: 131 ------------PQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETL 178
C K+VC ++ KV+G HF+GPNAGE+ QG++ A+K G
Sbjct: 401 ERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDF 460
Query: 179 ESTVGIHPTLAEEFTRVTITKRSGE 203
+S +GIHPT AE F +++T+RSGE
Sbjct: 461 DSMIGIHPTDAEVFMNLSVTRRSGE 485
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 179 bits (456), Expect = 2e-54
Identities = 80/192 (41%), Positives = 112/192 (58%), Gaps = 19/192 (9%)
Query: 7 NAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
NAGVK+ E I D + TN+P ++AVGDV + ELTPVA+ AG+
Sbjct: 274 NAGVKL-NEKGYIIVDEYQNTNVPGIYAVGDVTG------------RVELTPVAIAAGRR 320
Query: 66 LAARLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEF 124
L+ RL+ N ++DY N+ T VF+ G VGL+EE+A E YG DN+++Y + + P
Sbjct: 321 LSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYT 380
Query: 125 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 184
+ Q C +K+V +KV+G+H IG A E+IQG+A A+K G T ++TV I
Sbjct: 381 ALTGH-RQPCLMKLVVV-GKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAI 438
Query: 185 HPTLAEEFTRVT 196
HPT AEEF VT
Sbjct: 439 HPTAAEEF--VT 448
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria [Energy metabolism,
Electron transport].
Length = 446
Score = 139 bits (352), Expect = 2e-39
Identities = 66/186 (35%), Positives = 101/186 (54%), Gaps = 16/186 (8%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
AGV++ A + +T+ P+++AVGDV ++ LTPVA+
Sbjct: 273 AAGVRLNDLGAIAVDEYSRTSTPSIYAVGDV------------TDRINLTPVAIHEATCF 320
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFI 126
A +GN T D+ +AT VF+ G VGL+EE+A ++E+Y A ++P +
Sbjct: 321 AETEFGNNPTSFDHDLIATAVFSQPPIGTVGLTEEEARR--KFGDIEVYRAEFRPMKATF 378
Query: 127 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHP 186
R ++ +K+V + A KVLG H +GP+A E+IQG A A+K G T + +STV +HP
Sbjct: 379 SGRQ-EKTLMKLVVD-AKDDKVLGAHMVGPDAAEIIQGLAIALKMGATKDDFDSTVAVHP 436
Query: 187 TLAEEF 192
T AEE
Sbjct: 437 TSAEEL 442
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 138 bits (348), Expect = 1e-38
Identities = 73/189 (38%), Positives = 114/189 (60%), Gaps = 19/189 (10%)
Query: 7 NAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
N G+K + E +I D Q TN+P ++A+GDV+ K ELTPVA+ AG+
Sbjct: 274 NVGIK-LNEKGQIIVDEYQNTNVPGIYALGDVVG------------KVELTPVAIAAGRK 320
Query: 66 LAARLYGNGTT-QMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEF 124
L+ RL+ T ++DY NV T VF+ G +GL+E++A E YG +N+++Y++ + P +
Sbjct: 321 LSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPM-Y 379
Query: 125 FIPQRNPQRCYLKVVCERAAP-QKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVG 183
+ Q+C +K+VC A +KV+G+H IG E++QG+A A+K G T ++TV
Sbjct: 380 YAMTSEKQKCRMKLVC--AGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVA 437
Query: 184 IHPTLAEEF 192
IHPT +EE
Sbjct: 438 IHPTSSEEL 446
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 134 bits (339), Expect = 8e-37
Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 30/219 (13%)
Query: 3 PAVSNAGVKVI----PENAKIDSDNEQTNIPNVFAVGDVL------HFSPFPVLPLFQEK 52
P + +K + P+ DN++T++ +++AVGD +L L+ E+
Sbjct: 336 PNTEDLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEE 395
Query: 53 P----------------ELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCV 96
P +LTPVA+ AG+LLA RL+G + +Y+ + + +F+ G +
Sbjct: 396 PYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTI 455
Query: 97 GLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNP---QRCYLKVVCERAAPQKVLGMHF 153
GLSE++A ++YG +N++IY + + F + +P ++ YLK+VC + + G+H
Sbjct: 456 GLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCV-GKEELIKGLHI 514
Query: 154 IGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 192
+G NA E++QG+A A+K T + T+ IHPT AEEF
Sbjct: 515 VGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEF 553
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 129 bits (327), Expect = 1e-35
Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 18/188 (9%)
Query: 7 NAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
NAGV++ K+D D TN+P ++A+GDV+ P L VA+ G++
Sbjct: 281 NAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVI------------GGPMLAHVAMAEGRI 327
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
A + G T +DY+ + + VFT E VGL+EE+A+E + ++ +
Sbjct: 328 AAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGI--DYKVGKFPFAANGRA 385
Query: 126 IPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIH 185
I ++K+V ++ ++LG H +GP A E+I A A++ G T E L T+ H
Sbjct: 386 ITMGET-DGFVKLVVDKET-GRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAH 443
Query: 186 PTLAEEFT 193
PTL+E
Sbjct: 444 PTLSEALK 451
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 128 bits (324), Expect = 9e-35
Identities = 81/205 (39%), Positives = 122/205 (59%), Gaps = 21/205 (10%)
Query: 7 NAGVKVIPENAKIDSDN-EQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
GVK + +N I+ D +T++P+++AVGDV ++ LTPVA+ G
Sbjct: 359 EVGVK-MDKNGAIEVDEYSRTSVPSIWAVGDV------------TDRINLTPVALMEGGA 405
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
LA L+GN T+ DY+ V + VF+ G VGL+EE+A E YG +++++ A ++P +
Sbjct: 406 LAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYG--DVDVFTANFRPLKAT 463
Query: 126 IPQRNPQRCYLKV-VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 184
+ P R ++K+ VC A KVLG+H G +A E+IQG+A AVK GLT ++TVGI
Sbjct: 464 LSGL-PDRVFMKLIVC--AKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGI 520
Query: 185 HPTLAEEF-TRVTITKRSGEDPTPQ 208
HPT AEEF T T T++ +D +
Sbjct: 521 HPTAAEEFVTMRTPTRKIRKDSPSE 545
>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide
oxidoreductase, dimerisation domain. This family
includes both class I and class II oxidoreductases and
also NADH oxidases and peroxidases.
Length = 110
Score = 116 bits (294), Expect = 6e-34
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCER 142
V + VFT E VGL+EE+A++ G +++ +K + + ++K+V +
Sbjct: 1 VPSVVFTDPEIASVGLTEEEAKKKGG--EVKVGKFPFKANGRALAYGE-TKGFVKLVADA 57
Query: 143 AAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR 194
++LG H +GPNAGE+IQ A A+K G T E L +T+ HPTL+E
Sbjct: 58 E-TGRILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEALVE 108
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 119 bits (299), Expect = 2e-31
Identities = 72/193 (37%), Positives = 109/193 (56%), Gaps = 17/193 (8%)
Query: 18 KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQ 77
K+D + +TNIP+++A+GDV + + LTPVA+ G A ++G T+
Sbjct: 321 KVD-EYSRTNIPSIWAIGDVTN------------RINLTPVALMEGTCFAKTVFGGQPTK 367
Query: 78 MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLK 137
DY+NVA VF VGLSEE+A E D L ++ + + P + I R ++ +K
Sbjct: 368 PDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDIL-VFTSSFNPMKNTISGRQ-EKTVMK 425
Query: 138 VVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF-TRVT 196
++ + A KVLG GP+A E++QG A A+KCG T +STVGIHP+ AEEF T +
Sbjct: 426 LIVD-AETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMRS 484
Query: 197 ITKRSGEDPTPQS 209
+T+R P++
Sbjct: 485 VTRRVTAKGKPKT 497
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 93.5 bits (233), Expect = 2e-22
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 32/194 (16%)
Query: 5 VSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAG 63
+ GV+ + E +I D +TN+P ++A+GDV+ P L VA G
Sbjct: 276 LEKLGVE-LDERGRIVVDEYMRTNVPGIYAIGDVI------------GGPMLAHVASHEG 322
Query: 64 KLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTE 123
+ A + G +DY V + ++T E VGL+EE+A+E K +
Sbjct: 323 IVAAENIAGKEPAHIDYDAVPSVIYTDPEVASVGLTEEQAKEAGYD---------VKIGK 373
Query: 124 F-F------IPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFE 176
F F + ++K++ ++ ++LG H IGP+A E+I A A++ T E
Sbjct: 374 FPFAANGKALALGETD-GFVKIIADKKT-GEILGAHIIGPHATELISEAALAMELEGTVE 431
Query: 177 TLESTVGIHPTLAE 190
L T+ HPTL+E
Sbjct: 432 ELARTIHPHPTLSE 445
>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 90.8 bits (225), Expect = 3e-21
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 5 VSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGK 64
+ GV++ + A + +TN+PN++A+GDV ++ LTPVA+ G
Sbjct: 295 LDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDV------------TDRVMLTPVAINEGA 342
Query: 65 LLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEF 124
++GN + D+ VA+ VF+ G GL EE A + + + + +Y + + P
Sbjct: 343 AFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKF--EKVAVYESSFTPLMH 400
Query: 125 FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI 184
I ++ K+V A VLG+H +G ++ E+IQ +K +T+G+
Sbjct: 401 NISGSKYKKFVAKIVTNHA-DGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGV 459
Query: 185 HPTLAEEF 192
HPT AEE
Sbjct: 460 HPTSAEEL 467
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 81.3 bits (201), Expect = 4e-18
Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 42/217 (19%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
AGVK+ + + +T+ P ++A GDV +L VA + G +
Sbjct: 275 KAGVKLDERGGILVDETLRTSNPGIYAAGDVT------------GGLQLEYVAAKEGVVA 322
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKA-EELYGADNLEIYHAYYKPTEFF 125
A G ++D + VFT VGL+E +A + D +
Sbjct: 323 AENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTN------- 375
Query: 126 IPQ----RNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEST 181
+P+ R+ R ++K+V E KVLG+ + P A EVI A A++ G+T + L T
Sbjct: 376 VPRARINRDT-RGFIKLVAEPGT-GKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDT 433
Query: 182 VGIHPTLAE-------EFTRVTITKRSGEDPTPQSCC 211
+ PT+AE F R D + SCC
Sbjct: 434 LHPFPTMAEGLKLAAQTFYR---------DVSKLSCC 461
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 80.6 bits (200), Expect = 7e-18
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 44/197 (22%)
Query: 7 NAGVKV----IPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQA 62
GVK I +D + +TN+PN++A+GD++ P L A
Sbjct: 281 ELGVKTDRGFIE----VD-EQLRTNVPNIYAIGDIV------------GGPMLAHKASAE 323
Query: 63 GKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK-- 120
G + A + GN +DY+ + +T E VGL+E KA+E ++++ +
Sbjct: 324 GIIAAEAIAGN-PHPIDYRGIPAVTYTHPEVASVGLTEAKAKE--EGFDVKVVKFPFAGN 380
Query: 121 -------PTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGL 173
T+ F+ K++ +VLG H +G A E+IQ A+
Sbjct: 381 GKALALGETDGFV----------KLI-FDKKDGEVLGAHMVGARASELIQEAQLAINWEA 429
Query: 174 TFETLESTVGIHPTLAE 190
T E L T+ HPTL+E
Sbjct: 430 TPEDLALTIHPHPTLSE 446
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 77.9 bits (193), Expect = 6e-17
Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 37/192 (19%)
Query: 14 PENAKIDSDNE---------QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGK 64
EN I+ D QT++P ++A GDV PL E A G+
Sbjct: 275 LENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNG-----KPPLLHE-------AADEGR 322
Query: 65 LLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEF 124
+ A G+ + Y + + VFT + VGL+EE+ + Y E
Sbjct: 323 IAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGID---------YVVGEV 373
Query: 125 -FIPQ-----RNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETL 178
F Q ++KV ++ ++LG H IGP+A +I A A++ GLT E L
Sbjct: 374 PFEAQGRARVMGKNDGFVKVYADKKT-GRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDL 432
Query: 179 ESTVGIHPTLAE 190
HPTL+E
Sbjct: 433 LRMPFYHPTLSE 444
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 71.1 bits (175), Expect = 2e-14
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 35/193 (18%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
G+K+ E I D+ +TN+PNV+A+GDV+ P L A + G
Sbjct: 293 AVGLKL-DERGFIPVDDHCRTNVPNVYAIGDVV------------RGPMLAHKAEEEGVA 339
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
+A R+ G +DY + ++T E VG +E++ + A+ +E YK +F
Sbjct: 340 VAERIAGQ-KGHIDYNTIPWVIYTSPEIAWVGKTEQQLK----AEGVE-----YKAGKF- 388
Query: 126 IPQRNPQRC--------YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFET 177
P R ++K++ + A ++LG+H IGPNA E+I A++ + E
Sbjct: 389 -PFMANGRALAMGEPDGFVKIIAD-AKTDEILGVHVIGPNASELIAEAVVAMEFKASSED 446
Query: 178 LESTVGIHPTLAE 190
+ HPTL+E
Sbjct: 447 IARICHAHPTLSE 459
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 63.0 bits (154), Expect = 1e-11
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 27/189 (14%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
AGV+V E I D + +TN+P++FA+GD++ +P L V G +
Sbjct: 283 KAGVEV-DERGFIRVDKQCRTNVPHIFAIGDIV------------GQPMLAHKGVHEGHV 329
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
A + G D + + + +T E VGL+E++A+E + +E A + +
Sbjct: 330 AAEVIAGK-KHYFDPKVIPSIAYTEPEVAWVGLTEKEAKE----EGIEYETATFP---WA 381
Query: 126 IPQR----NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLEST 181
R + K++ + +VLG +G NAGE++ A++ G E + T
Sbjct: 382 ASGRAIASDCADGMTKLIFD-KETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALT 440
Query: 182 VGIHPTLAE 190
+ HPTL E
Sbjct: 441 IHAHPTLHE 449
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 60.6 bits (148), Expect = 5e-11
Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 32/191 (16%)
Query: 8 AGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLA 67
AGV+ D +T P ++A GD + T A +++A
Sbjct: 281 AGVETDARGYIKVDDQLRTTNPGIYAAGDC------------NGRGAFTHTAYNDARIVA 328
Query: 68 ARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIP 127
A L G ++ + V +T VG++E +A + G + + P
Sbjct: 329 ANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARK-SGRR-VLVGT---------RP 377
Query: 128 QRNPQRC--------YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLE 179
R ++KVV + A ++LG +G + E+I A+ G + TL
Sbjct: 378 MTRVGRAVEKGETQGFMKVVVD-ADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLS 436
Query: 180 STVGIHPTLAE 190
+ IHPT++E
Sbjct: 437 RAIHIHPTVSE 447
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 58.4 bits (142), Expect = 3e-10
Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 36/197 (18%)
Query: 5 VSNAGVKVIPENAKIDSDNEQ-TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAG 63
+ AGV V E+ ++ D Q T+ VFA+GDV SP+ +L VA
Sbjct: 269 AAAAGVDVD-EDGRVVVDEYQRTSAEGVFALGDVS--SPY----------QLKHVANHEA 315
Query: 64 KLLAARL-YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAY---- 118
+++ L + + D++ V VFT + VGL+E +A G D Y
Sbjct: 316 RVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAA-GLDITVKVQNYGDVA 374
Query: 119 Y----KPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLT 174
Y + T F+ K++ +R ++LG H IGP A +IQ A+ GL
Sbjct: 375 YGWAMEDTTGFV----------KLIADRDT-GRLLGAHIIGPQASTLIQPLIQAMSFGLD 423
Query: 175 FETL-ESTVGIHPTLAE 190
+ IHP L E
Sbjct: 424 AREMARGQYWIHPALPE 440
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 57.0 bits (138), Expect = 1e-09
Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 21/168 (12%)
Query: 25 QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVA 84
QTN+P+++A GDV+ +L VA G A G +++Y V
Sbjct: 294 QTNVPHIYACGDVIG------------GIQLAHVAFHEGTTAALHASGE-DVKVNYHAVP 340
Query: 85 TTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAA 144
++T E VGL+E++A E YG D + + I Q +KV+ E
Sbjct: 341 RCIYTSPEIASVGLTEKQAREQYG-DIRIGEFPFTANGKALI--IGEQTGKVKVIVE--- 394
Query: 145 P--QKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 190
P Q+++G+ IGP A E+I + +T + +E + HPTL+E
Sbjct: 395 PKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSE 442
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 55.5 bits (134), Expect = 3e-09
Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 34/193 (17%)
Query: 8 AGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLA 67
AGV+V + + +T+ V+A+GDV SP+ +L VA +++
Sbjct: 275 AGVEVDEDGRIKVDEYGRTSARGVWALGDVS--SPY----------QLKHVANAEARVVK 322
Query: 68 ARL-YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGAD---NLEIYH--AY--- 118
L + N +M + V + VFT + VGL+E++A E G D ++ Y AY
Sbjct: 323 HNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREA-GHDITVKIQNYGDVAYGWA 381
Query: 119 YKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTF-ET 177
+ T F K++ +R K+LG H IGP A +IQ A+ GL E
Sbjct: 382 MEDTTGFC----------KLIADRDT-GKLLGAHIIGPQASSLIQPLITAMAFGLDAREM 430
Query: 178 LESTVGIHPTLAE 190
IHP L E
Sbjct: 431 ARKQYWIHPALPE 443
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 54.9 bits (132), Expect = 5e-09
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 22/154 (14%)
Query: 58 VAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHA 117
+ + + + + + + Y+N+ + +T E +GL+E++A+ELY DN+ + +
Sbjct: 492 IEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEIS 551
Query: 118 YYKPT-------EFFIPQRNPQRCY--------------LKVVCERAAPQKVLGMHFIGP 156
+YK P + Y +K+V +++LGM +G
Sbjct: 552 FYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIV-YLKDTKEILGMFIVGS 610
Query: 157 NAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 190
A +I A+ L+ + L V HPT++E
Sbjct: 611 YASILIHEGVLAINLKLSVKDLAHMVHSHPTISE 644
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 52.3 bits (125), Expect = 4e-08
Identities = 51/210 (24%), Positives = 82/210 (39%), Gaps = 27/210 (12%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
GV A + + +T+ P+++A GD + P+ VA AG
Sbjct: 292 AVGVTTDTSGAIVVNPAMETSAPDIYAAGDC------------SDLPQFVYVAAAAGSRA 339
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADN----LEIYHAYYKPT 122
+ G G +D + +FT + VGLSE KA L G + L + +
Sbjct: 340 GINMTG-GNATLDLSAMPAVIFTDPQVATVGLSEAKAH-LSGIETISRVLTMENVPRALA 397
Query: 123 EFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTV 182
F ++K+V E +K++G + GE+IQ A A+ +T E L +
Sbjct: 398 NF------ETDGFIKLVAEEGT-RKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQL 450
Query: 183 GIHPTLAEEFTRVTITKRSGEDPTPQSCCS 212
+ T+ E T R D SCC+
Sbjct: 451 FPYLTMVEGLKLCAQTFRK--DVKELSCCA 478
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 50.7 bits (122), Expect = 1e-07
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 48/198 (24%)
Query: 15 ENAKIDSDNE--------QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
EN ID + QT +++A+GDV+ +P+L VA+ G++
Sbjct: 289 ENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIG------------EPQLAHVAMAEGEMA 336
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLE------------I 114
A + G DY + +T E VGL+EE+A+E G D
Sbjct: 337 AEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKE-AGYDVKVGKFPFAANGKALT 395
Query: 115 YHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLT 174
Y ++ F+ KVV +LG+ +GP+ E+I +A A++ G
Sbjct: 396 YGE----SDGFV----------KVVA-DRDTHDILGVQAVGPHVTELISEFALALELGAR 440
Query: 175 FETLESTVGIHPTLAEEF 192
+ T+ HPTL+E
Sbjct: 441 LWEVAGTIHPHPTLSEAI 458
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol [Cellular processes, Detoxification].
Length = 427
Score = 50.1 bits (120), Expect = 2e-07
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 5 VSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPE---LTPVAVQ 61
++G+K+ A ++ QT++PN++A GDV +KP L A +
Sbjct: 238 AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIIT-----KKPAWVPLAWGANK 292
Query: 62 AGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEEL-YGADNLEIY---HA 117
G++ + GN T F L G++E +A++L + + HA
Sbjct: 293 MGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHA 352
Query: 118 YYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFE 176
Y P +LK++ E +++LG +G A + I AAA+ GLT +
Sbjct: 353 NYYP--------GNSPLHLKLIYE-KDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVK 403
Query: 177 TL 178
L
Sbjct: 404 DL 405
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 48.6 bits (116), Expect = 6e-07
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 29/201 (14%)
Query: 2 PPAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQ 61
P + N +++ A D QT++P VFAVGDV P+ T +++
Sbjct: 257 PLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDV------------NGGPQFTYISLD 304
Query: 62 AGKLLAARLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK 120
+++ L G+G+ T D NV TT+F VGL+E++A+E Y
Sbjct: 305 DFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGLP---------YA 355
Query: 121 PTEFFI---PQ---RNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLT 174
E + P+ N R KVV +++LG G + E+I A+ +
Sbjct: 356 VKELLVAAMPRAHVNNDLRGAFKVVVN-TETKEILGATLFGEGSQEIINLITMAMDNKIP 414
Query: 175 FETLESTVGIHPTLAEEFTRV 195
+ + + HPT+AE +
Sbjct: 415 YTYFKKQIFTHPTMAENLNDL 435
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 48.6 bits (116), Expect = 7e-07
Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 39/219 (17%)
Query: 4 AVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAG 63
A+ AGV V + A + +T++P+++A GD ++P+ VA AG
Sbjct: 371 ALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDC------------TDQPQFVYVAAAAG 418
Query: 64 KLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEE--------LYGADNLEIY 115
A + G G +D + VFT + VG SE +A DN+
Sbjct: 419 TRAAINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRA 477
Query: 116 HAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTF 175
A + T FI K+V E +++G+ + P AGE+IQ A A++ +T
Sbjct: 478 LANFD-TRGFI----------KLVIE-EGSGRLIGVQAVAPEAGELIQTAALAIRNRMTV 525
Query: 176 ETLESTVGIHPTLAE--EFTRVTITKRSGEDPTPQSCCS 212
+ L + + T+ E + T K D SCC+
Sbjct: 526 QELADQLFPYLTMVEGLKLAAQTFNK----DVKQLSCCA 560
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 47.8 bits (115), Expect = 1e-06
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 33/177 (18%)
Query: 22 DNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQ 81
+N QT +P+++AVGDV+ F P L ++ G++ A G T + +
Sbjct: 296 ENYQTAVPHIYAVGDVIGF------------PSLASASMDQGRIAAQHAVGEATAHL-IE 342
Query: 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQR------CY 135
++ T ++T E VG +E++ E+ A +K R
Sbjct: 343 DIPTGIYTIPEISSVGKTEQELTAAKVP--YEVGRARFKEL---------ARAQIAGDNV 391
Query: 136 --LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 190
LK++ R ++LG+H G A E+I A ++ T E +T +PT+AE
Sbjct: 392 GMLKILFHRET-LEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAE 447
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 47.6 bits (113), Expect = 2e-06
Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 38/215 (17%)
Query: 8 AGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
+ V E I D QT + ++A GD ++P+ VA G
Sbjct: 281 ESIGVETERGAIRIDEHLQTTVSGIYAAGDC------------TDQPQFVYVAAAGGSRA 328
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFI 126
A + G G +D + +FT + VGLSE +A+ Y +
Sbjct: 329 AINMTG-GDASLDLSAMPEVIFTDPQVATVGLSEAEAQA----------QGYDTDSRTLD 377
Query: 127 PQRNPQRC-------YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLE 179
+ P+ ++K+V ER + ++LG+ + AGE+IQ A++ +T +
Sbjct: 378 LENVPRALVNFDTGGFIKMVAERGS-GRLLGVQVVAGEAGELIQTAVMALRARMTVNEIA 436
Query: 180 STVGIHPTLAE--EFTRVTITKRSGEDPTPQSCCS 212
+ + T+ E + T TK D SCC+
Sbjct: 437 DELFPYLTMVEGLKLCAQTFTK----DVKQLSCCA 467
>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 47.2 bits (113), Expect = 2e-06
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 32/171 (18%)
Query: 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNVAT 85
T++P ++A GD VLPL VA G++ G + + + VA+
Sbjct: 302 TSVPGIYAAGDCTG-----VLPL-------ASVAAMQGRIAMYHALGEAVSPLRLKTVAS 349
Query: 86 TVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIP-QRNP-------QRCYLK 137
VFT E VG+S+ + G +P NP + ++K
Sbjct: 350 NVFTRPEIATVGVSQAAIDS--GE---------VPARTVMLPLATNPRAKMSGLRDGFVK 398
Query: 138 VVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTL 188
+ C R V+G + P A E+I A AV+ LT + L T ++P+L
Sbjct: 399 LFC-RPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSL 448
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 46.5 bits (110), Expect = 4e-06
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 21/187 (11%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
NAG+ V A + T N++A+GDV F T +++ +++
Sbjct: 263 NAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQF------------TYISLDDYRIV 310
Query: 67 AARLYGNGT-TQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
L G G + D +NV +VF VG++EE+A E GAD P
Sbjct: 311 RDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARE-SGAD----IQVVTLPVAAI 365
Query: 126 IPQR--NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVG 183
R N R LK + + Q++LG + ++ E+I + GL + L +
Sbjct: 366 PRARVMNDTRGVLKAIVDNKT-QRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIF 424
Query: 184 IHPTLAE 190
HP+++E
Sbjct: 425 THPSMSE 431
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 46.2 bits (110), Expect = 4e-06
Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 41/197 (20%)
Query: 7 NAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
GV + A ID D +TN+P+++A+GDV K +L VA +A +
Sbjct: 282 KTGVALTDRGAIAID-DYMRTNVPHIYAIGDV------------TAKLQLAHVA-EAQGV 327
Query: 66 LAARLYGNGTTQM--DYQNVATTVFTPLEYGCVGLSEEKAEEL----------YGADNLE 113
+AA T DY+ + F + GL+EE+A E + A+
Sbjct: 328 VAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKA 387
Query: 114 IYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGL 173
H PT F +K+V + A ++LG H IGP+ E++ A K L
Sbjct: 388 --HGLGDPTGF-----------VKLVAD-AKYGELLGGHLIGPDVSELLPELTLAQKWDL 433
Query: 174 TFETLESTVGIHPTLAE 190
T E L V HPTL+E
Sbjct: 434 TAEELARNVHTHPTLSE 450
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 44.5 bits (105), Expect = 2e-05
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 33/180 (18%)
Query: 19 IDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQM 78
+ +D+ +T++P V+ +GDV P+ K E VA R+ G ++
Sbjct: 296 LANDHHRTSVPGVWVIGDVTSG------PMLAHKAEDEAVAC------IERIAGKAG-EV 342
Query: 79 DYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRC---- 134
+Y + ++T E VG +EE+ L+ YK +F P R
Sbjct: 343 NYGLIPGVIYTRPEVATVGKTEEQ---------LKAEGRAYKVGKF--PFTANSRAKINH 391
Query: 135 ----YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 190
+ K++ + A +VLG+H +GP+ E+I + A++ + E + T HPT +E
Sbjct: 392 ETEGFAKILAD-ARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSE 450
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 39.6 bits (93), Expect = 7e-04
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 32/188 (17%)
Query: 4 AVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGD---VLHFSPFPVLPLFQEKPELTPVAV 60
+ + G+K + A I + +T+I N++A GD + + + K P+A
Sbjct: 250 FLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYN--------IVSNKNVYVPLAT 301
Query: 61 QA---GKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY-- 115
A G+++ L G + A LE GL+EE+A++L G D ++
Sbjct: 302 TANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKL-GIDYKTVFIK 360
Query: 116 ---HAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV--IQGYAAAVK 170
H Y P + Y+K++ E A + +LG IG G V I A A+
Sbjct: 361 DKNHTNYYP--------GQEDLYVKLIYE-ADTKVILGGQIIGKK-GAVLRIDALAVAIY 410
Query: 171 CGLTFETL 178
LT + L
Sbjct: 411 AKLTTQEL 418
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 37.3 bits (87), Expect = 0.003
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 7 NAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSP 42
AGV++ +D + +T++P ++A GDV P
Sbjct: 248 QAGVELDERGYIVVD-EYLRTSVPGIYAAGDVAEGKP 283
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 34.1 bits (78), Expect = 0.036
Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 8/128 (6%)
Query: 6 SNAGVKVIPENAKI--DSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAG 63
++A + + D + P+V+A GDV + L +AV AG
Sbjct: 243 NDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIA--LWAIAVAAG 300
Query: 64 KLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTE 123
++ A + G V + V L GL+E K E L + P
Sbjct: 301 RIAAENIAGALRIPGLLGTVISDVGD-LCAASTGLTEGK--ERGIDVVLVVSGG-KDPRA 356
Query: 124 FFIPQRNP 131
P
Sbjct: 357 HLYPGAEL 364
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 32.7 bits (75), Expect = 0.12
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 2 PPAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLH 39
P A G+++ + + + T+ VFA GDV+
Sbjct: 289 PFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVT 326
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 32.3 bits (74), Expect = 0.15
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 26 TNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARL 70
+ P+VFA GD + P +P+ AV+ +LAA L
Sbjct: 269 LSHPHVFAAGDCAVITDAP-------RPKAGVYAVRQAPILAANL 306
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 31.9 bits (73), Expect = 0.22
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 22 DNEQTNIPNVFAVGDV 37
+ +T++P +FA GDV
Sbjct: 259 EEMETSVPGIFAAGDV 274
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 31.5 bits (72), Expect = 0.31
Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 21/80 (26%)
Query: 29 PNVFAVGDVLHFS-PFPVLPLFQEKPELTPVAVQAG----KLLAARLYGNGTTQMDYQNV 83
P++FA GD P PV P Q A Q G K + ARL G Y++
Sbjct: 292 PDIFAAGDCAAVIDPRPVPPTAQ-------AAHQQGEYAAKNIKARLKGKPLKPFKYKDK 344
Query: 84 ATTVFTPLEYGCVGLSEEKA 103
T L + A
Sbjct: 345 GT---------LASLGDFSA 355
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 30.9 bits (70), Expect = 0.42
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 5/26 (19%)
Query: 13 IPENAKIDSDNEQTNIPNVFAVGDVL 38
IP N D +TN+PN++A+GD++
Sbjct: 259 IPVN-----DKFETNVPNIYAIGDII 279
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 30.7 bits (70), Expect = 0.61
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 15 ENAKIDSDNEQTNIPNVFAVGDVLH 39
K+D + +QT+IP VFA GD +
Sbjct: 403 GRIKVDENLQQTSIPGVFAGGDAVR 427
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 29.9 bits (68), Expect = 0.93
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 21 SDNEQTNIPNVFAVGDVLH 39
N +T++ NV+ +GDV
Sbjct: 800 DANGETSLTNVYMIGDVQR 818
>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 292
Score = 28.8 bits (65), Expect = 2.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 145 PQKVLGMHFIGP----NAGEVIQGYAAAVKCGLTFETLESTV---GIHPTLAEEF 192
P++ +G+HF+ P E+I+G A TFE + V G T+AE+F
Sbjct: 134 PERFIGIHFMNPVPVMKLVELIRGIATDEA---TFEAAKEFVTKLGKTITVAEDF 185
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 28.7 bits (64), Expect = 2.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 2 PPAVSNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVL 38
P +K + ++++T+IP VFA GD++
Sbjct: 389 PIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDII 425
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 28.4 bits (64), Expect = 2.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 22 DNEQTNIPNVFAVGDV 37
+ +T++P VFA GDV
Sbjct: 258 EGMRTSVPGVFAAGDV 273
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 28.2 bits (64), Expect = 3.3
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 19 IDSDNEQTNIPNVFAVGDV 37
+D+ T++P VFA GD
Sbjct: 468 VDARG-ATSVPGVFAAGDC 485
>gnl|CDD|203850 pfam08094, Toxin_24, Conotoxin TVIIA/GS family. This family
consists of conotoxins isolated from the venom of cone
snail Conus tulipa and Conus geographus. Conotoxin
TVIIA, isolated from Conus tulipa displays little
sequence homology with other well-characterized
pharmacological classes of peptides, but displays
similarity with conotoxin GS, a peptide from Conus
geographus. Both these peptides block skeletal muscle
sodium channels and also share several biochemical
features and represent a distinct subgroup of the
four-loop conotoxins.
Length = 33
Score = 25.4 bits (55), Expect = 3.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 129 RNPQRCYLKVVCERAAPQKVLGMH 152
R P +C + ++C R PQK +G H
Sbjct: 8 RCPPQCCMGLMCGRGNPQKCIGAH 31
>gnl|CDD|217702 pfam03734, YkuD, L,D-transpeptidase catalytic domain. This family
of proteins are found in a range of bacteria. It has
been shown that this domain can act as an
L,D-transpeptidase that gives rise to an alternative
pathway for peptidoglycan cross-linking. This gives
bacteria resistance to beta-lactam antibiotics that
inhibit PBPs which usually carry out the cross-linking
reaction. The conserved region contains a conserved
histidine and cysteine, with the cysteine thought to be
an active site residue. Several members of this family
contain peptidoglycan binding domains. The molecular
structure of YkuD protein shows this domain has a novel
tertiary fold consisting of a beta-sandwich with two
mixed sheets, one containing five strands and the other,
six strands. The two beta-sheets form a cradle capped by
an alpha-helix. This family was formerly called the
ErfK/YbiS/YcfS/YnhG family, but is now named after the
first protein of known structure.
Length = 89
Score = 26.6 bits (59), Expect = 3.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 94 GCVGLSEEKAEELY 107
GC+ LS E A+ELY
Sbjct: 65 GCIRLSNEDAKELY 78
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 28.2 bits (64), Expect = 3.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 18 KIDSDNEQTNIPNVFAVGDV 37
D + +T++P VFA GD+
Sbjct: 407 IADDETGRTSLPGVFAGGDI 426
>gnl|CDD|227751 COG5464, COG5464, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 27.7 bits (62), Expect = 3.8
Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 28/123 (22%)
Query: 34 VGDVLHF----SPFPV-------------LPLFQEKPELTPV----AVQAGKLLAARLYG 72
V +L + SP+P +LT V +Q +L L
Sbjct: 110 VVPILFYHGERSPYPYSLIWLDEFDDRKLYSSAFPLVDLTVVPDDEIMQHRRLALLELLQ 169
Query: 73 NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF--IPQRN 130
Q D + + T L YG + S+ + YG + T F+ I +
Sbjct: 170 KHIRQRDLMGLVEQLATLLVYGYLNDSQLEILFNYGLQTDT-----LRETRFYQEIAEEG 224
Query: 131 PQR 133
PQ
Sbjct: 225 PQH 227
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 28.2 bits (63), Expect = 4.4
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 13 IPENAKIDSDNE--QTNIPNVFAVGDVL 38
+ E + +TNI NVF +GD
Sbjct: 788 LDEYGWPVVNQATGETNITNVFVIGDAN 815
>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 282
Score = 27.6 bits (62), Expect = 5.2
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 145 PQKVLGMHFIGP----NAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 192
P KV+GMHF P E+I+G A + E L +G P +
Sbjct: 133 PDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVKNA 184
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 27.4 bits (62), Expect = 6.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 16 NAKIDSDNEQTNIPNVFAVGD 36
+ QT+ P VFA GD
Sbjct: 418 RVAAPDNAYQTSNPKVFAAGD 438
>gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 27.3 bits (61), Expect = 6.9
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 18 KIDSDNEQTNIPNVFAVGDV 37
+I+ D E TNIP +FA G+V
Sbjct: 352 RINEDCE-TNIPGLFACGEV 370
>gnl|CDD|213360 cd12826, EcCorA_ZntB-like_u1, uncharacterized bacterial subfamily
of the Escherichia coli CorA-Salmonella typhimurium ZntB
family. A uncharacterized subfamily of the Escherichia
coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like)
family of the MIT superfamily of essential membrane
proteins involved in transporting divalent cations
(uptake or efflux) across membranes. The
EcCorA-ZntB_like family includes the Mg2+ transporters
Escherichia coli and Salmonella typhimurium CorAs, which
can also transport Co2+, and Ni2+. Structures of the
intracellular domain of EcCorA-ZntB_like family members,
Vibrio parahaemolyticus and Salmonella typhimurium ZntB,
form funnel-shaped homopentamers, the tip of the funnel
is formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA. Natural
variants such as GVN and GIN, as in some ZntB family
proteins, may be associated with the transport of
different divalent cations, such as zinc and cadmium.
The functional diversity of MIT transporters may also be
due to minor structural differences regulating gating,
substrate selection, and transport.
Length = 281
Score = 26.8 bits (60), Expect = 8.0
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 8/24 (33%)
Query: 76 TQMDY-QN-------VATTVFTPL 91
+Q+D QN V TT+F PL
Sbjct: 211 SQIDIRQNRIMKILTVVTTIFLPL 234
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 26.7 bits (59), Expect = 9.9
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 27 NIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGN 73
IPNVFA+GD + PL P L VA Q G LA
Sbjct: 307 PIPNVFALGDC---AANEERPL----PTLAQVASQQGVYLAKEFNNE 346
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.405
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,851,255
Number of extensions: 1000221
Number of successful extensions: 946
Number of sequences better than 10.0: 1
Number of HSP's gapped: 894
Number of HSP's successfully gapped: 76
Length of query: 212
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 119
Effective length of database: 6,812,680
Effective search space: 810708920
Effective search space used: 810708920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.1 bits)