RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11186
(212 letters)
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 299 bits (767), Expect = e-100
Identities = 105/206 (50%), Positives = 140/206 (67%), Gaps = 12/206 (5%)
Query: 7 NAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
GVK+ + KI EQTN+P ++A+GD+L +K ELTPVA+QAG+L
Sbjct: 324 TVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILE-----------DKVELTPVAIQAGRL 372
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
LA RLY T + DY+NV TTVFTPLEYG GLSEEKA E +G +N+E+YH+Y+ P E+
Sbjct: 373 LAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWT 432
Query: 126 IPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIH 185
IP R+ +CY K++C ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GIH
Sbjct: 433 IPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIH 492
Query: 186 PTLAEEFTRVTITKRSGEDPTPQSCC 211
P AE FT +++TKRSG C
Sbjct: 493 PVCAEVFTTLSVTKRSGASILQAGSC 518
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 292 bits (750), Expect = 5e-98
Identities = 108/203 (53%), Positives = 144/203 (70%), Gaps = 12/203 (5%)
Query: 7 NAGVKVIPENAKIDSD-NEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
AG+ P+N KI D E T++P+++A+GDV +PELTP A++AGKL
Sbjct: 296 KAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAE-----------GRPELTPTAIKAGKL 344
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
LA RL+G +T MDY NV TTVFTPLEYGCVGLSEE+A L+G +++E+YHAYYKP EF
Sbjct: 345 LAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFT 404
Query: 126 IPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIH 185
+ R+ +CY+K+VC R PQ VLG+HF+GPNAGEV QG+A +KCG ++ + TVGIH
Sbjct: 405 VADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIH 464
Query: 186 PTLAEEFTRVTITKRSGEDPTPQ 208
PT +EE ++ I+KRSG +PT
Sbjct: 465 PTCSEEVVKLHISKRSGLEPTVT 487
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 288 bits (739), Expect = 3e-95
Identities = 97/205 (47%), Positives = 131/205 (63%), Gaps = 11/205 (5%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
GVK+ + +D+EQT + NV+A+GD+ KP+LTPVA+QAG+ L
Sbjct: 404 TVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINA-----------GKPQLTPVAIQAGRYL 452
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFI 126
A RL+ T DY NVATTVFTPLEYG GLSEE A E YG ++E+YH+ +KP E+ +
Sbjct: 453 ARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTV 512
Query: 127 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHP 186
R CY+K+VC ++ +VLG+H +GPNAGE+ QGYA A+K G T + T+GIHP
Sbjct: 513 AHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHP 572
Query: 187 TLAEEFTRVTITKRSGEDPTPQSCC 211
T +E FT + +TK+SG P CC
Sbjct: 573 TCSETFTTLHVTKKSGVSPIVSGCC 597
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 280 bits (719), Expect = 2e-93
Identities = 121/198 (61%), Positives = 148/198 (74%), Gaps = 12/198 (6%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
NAGV V + +D E TN+ N++AVGD+++ KPELTPVAV AG+LL
Sbjct: 298 NAGVTVQKDKIPVD-SQEATNVANIYAVGDIIY-----------GKPELTPVAVLAGRLL 345
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFI 126
A RLYG T +MDY++VATTVFTPLEY CVGLSEE A + +GAD +E++H YYKPTEFFI
Sbjct: 346 ARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFI 405
Query: 127 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHP 186
PQ++ + CYLK V ER Q+V G+H+IGP AGEVIQG+AAA+K GLT TL +TVGIHP
Sbjct: 406 PQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHP 465
Query: 187 TLAEEFTRVTITKRSGED 204
T AEEFTR+ ITKRSG D
Sbjct: 466 TTAEEFTRLAITKRSGLD 483
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 259 bits (665), Expect = 1e-85
Identities = 71/203 (34%), Positives = 105/203 (51%), Gaps = 16/203 (7%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
AG++V + TN+P V+A+GD+ + +LTPVA+ AG+ L
Sbjct: 273 AAGIEVQSNGMVPTDAYQNTNVPGVYALGDITG------------RDQLTPVAIAAGRRL 320
Query: 67 AARLY-GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
A RL+ G ++DY N+ T VF VGLSE +A E G D L +Y + P +
Sbjct: 321 AERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLG-DVLTVYETSFTPMRYA 379
Query: 126 IPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIH 185
+ + + +K+VC Q+V+G+H IG A E++QG+A AVK G T ++TV IH
Sbjct: 380 LNEH-GPKTAMKLVCA-GPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIH 437
Query: 186 PTLAEEFTRVTITKRSGEDPTPQ 208
P AEE + R DP P+
Sbjct: 438 PGSAEELVTLKEPVRRPGDPLPE 460
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 259 bits (665), Expect = 3e-85
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 20/208 (9%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
N GVK+ P+ + +TN+PN++A+GD+ + LTPVA+ G L
Sbjct: 301 NVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITD------------RLMLTPVAINEGAAL 348
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFI 126
++GN + D+ VA+ VF+ G GL EE A + + + +Y + + P I
Sbjct: 349 VDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFE--KVAVYMSSFTPLMHNI 406
Query: 127 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHP 186
++ K+V + VLG+H +G A E+IQ ++ +T+G+HP
Sbjct: 407 SGSKYKKFVAKIVTN-HSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHP 465
Query: 187 TLAEEFTR-----VTITKRSGEDPTPQS 209
T AEE K + P S
Sbjct: 466 TSAEELCSMRTPSYYYVKGEKMEKLPDS 493
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 257 bits (658), Expect = 2e-84
Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 15/188 (7%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
G++ + I + + TN+ ++AVGDV K LTPVA+ AG+ L
Sbjct: 302 KLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCG------------KALLTPVAIAAGRKL 349
Query: 67 AARLYGNG-TTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
A RL+ +++DY N+ T VF+ G VGL+E++A YG +N++ Y + P
Sbjct: 350 AHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHA 409
Query: 126 IPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIH 185
+ +R +C +K+VC +KV+G+H G E++QG+A AVK G T ++TV IH
Sbjct: 410 VTKR-KTKCVMKMVCA-NKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIH 467
Query: 186 PTLAEEFT 193
PT +EE
Sbjct: 468 PTSSEELV 475
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 253 bits (648), Expect = 6e-83
Identities = 63/197 (31%), Positives = 112/197 (56%), Gaps = 17/197 (8%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
N G+K+ + I + + TN+PN++++GDV+ K ELTPVA+ AG+ L
Sbjct: 293 NVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVG------------KVELTPVAIAAGRKL 340
Query: 67 AARLYGN---GTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTE 123
+ RL+G ++DY+NV + +F+ E G +G+SE++A E YG +N+++Y++ +
Sbjct: 341 SNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFTAMY 400
Query: 124 FFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVG 183
+ + K+VC +KV+G+H +G ++ E++QG+ A+K G T ++ V
Sbjct: 401 YAMLSE-KSPTRYKIVCA-GPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVA 458
Query: 184 IHPTLAEEFTRVTITKR 200
IHPT AEE + +
Sbjct: 459 IHPTSAEELVTMRGSHH 475
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 251 bits (644), Expect = 3e-82
Identities = 62/201 (30%), Positives = 99/201 (49%), Gaps = 19/201 (9%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
AGVKV A + + TN+ +++AVGDV +LTPVA+
Sbjct: 297 RAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTG------------HIQLTPVAIHDAMCF 344
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFI 126
+ N +T DY + T VF+ E G VGLSEE A Y +EIY ++P +
Sbjct: 345 VKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRYK--RVEIYRTVFRPMRNVL 402
Query: 127 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHP 186
P++ ++K+V + + V+G H +G NAGE+ Q ++K LT + + T+ +HP
Sbjct: 403 SGS-PEKMFMKLVVD-GESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHP 460
Query: 187 TLAEEFT---RVTITKRSGED 204
T++EE + + +GE
Sbjct: 461 TMSEELVTMYKPSYVYENGEK 481
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 250 bits (642), Expect = 4e-82
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 19/200 (9%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
AGV+ A I +T+ P ++A+GDV + +LTPVA+
Sbjct: 277 AAGVRTNELGAIIVDAFSRTSTPGIYALGDVTD------------RVQLTPVAIHEAMCF 324
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFI 126
Y N T D+ +AT VF+ E G VG++EE+A + +E+Y A ++P + +
Sbjct: 325 IETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQ--EIEVYRAEFRPMKATL 382
Query: 127 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHP 186
R ++ +K+V AA +KV+G H +G +AGE+ Q +++ G T + + T+ +HP
Sbjct: 383 SGR-KEKTIMKLVVN-AADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHP 440
Query: 187 TLAEEFTR---VTITKRSGE 203
T AEE + R+GE
Sbjct: 441 TAAEELVTMYQPSYRVRNGE 460
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 251 bits (644), Expect = 4e-82
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
AGV+V A +TN+ N++A+GDV + LTPVA+ G
Sbjct: 297 KAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTD------------RVMLTPVAINEGAAF 344
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFI 126
++ N D+ VA VF+ G G EE A + Y D + +Y + + P I
Sbjct: 345 VDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVAVYESSFTPLMHNI 402
Query: 127 PQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHP 186
++ +++V A +VLG+H +G ++ E+IQ A +K G +T+G+HP
Sbjct: 403 SGSTYKKFMVRIVTN-HADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHP 461
Query: 187 TLAEEFTR---VTITKRSGEDPTPQSC 210
T AEE G+
Sbjct: 462 TSAEELCSMRTPAYFYEKGKRVEKIDS 488
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 247 bits (633), Expect = 6e-81
Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 15/188 (7%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
AGVK + + + TNI ++AVGD ELTPVAV AG+ L
Sbjct: 274 AAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTG------------AVELTPVAVAAGRRL 321
Query: 67 AARLYGNGTTQ-MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
+ RL+ N + +DY N+ T VF+ G VGL+E +A E YG D +++Y + +
Sbjct: 322 SERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTA 381
Query: 126 IPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIH 185
+ Q C +K+VC + +K++G+H IG E++QG+A A+K G T + ++TV IH
Sbjct: 382 VTTH-RQPCRMKLVCV-GSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIH 439
Query: 186 PTLAEEFT 193
PT AEEF
Sbjct: 440 PTAAEEFV 447
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 213 bits (544), Expect = 3e-67
Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 29/215 (13%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQE--------------- 51
V+ +D +N++T++ N++AVGD +
Sbjct: 284 KLNVETNNNYIVVD-ENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKEN 342
Query: 52 -------KPELTPVAVQAGKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAE 104
+LTPVA+ AG+LLA RL+ T + +Y+ + T +F+ G +GLSEE A
Sbjct: 343 VTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAI 402
Query: 105 ELYGADNLEIYHAYYKPTEFFIPQR---NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV 161
++YG +N++IY + + F + ++ YLK+VC + + G+H IG NA E+
Sbjct: 403 QIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCV-GKDELIKGLHIIGLNADEI 461
Query: 162 IQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVT 196
+QG+A A+K T + + T+ IHPT AEEF +T
Sbjct: 462 VQGFAVALKMNATKKDFDETIPIHPTAAEEF--LT 494
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 112 bits (282), Expect = 3e-29
Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 31/211 (14%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
G+ + ++ + QT++PNV+AVGD++ P A ++G
Sbjct: 324 ILGLDL-GPKGEVLVNEYLQTSVPNVYAVGDLIG------------GPMEMFKARKSGCY 370
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGA------------DNLE 113
A + G +N + T E +G+ EE+A
Sbjct: 371 AARNVMG-EKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNV 429
Query: 114 IYHAYYKPTEFFIPQRNPQ-RCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCG 172
A + + + + K+V + A +KVLG H +G A + Q +K G
Sbjct: 430 ALPASDRTMLYAFGKGTAHMSGFQKIVID-AKTRKVLGAHHVGYGAKDAFQYLNVLIKQG 488
Query: 173 LTFETLEST--VGIHPTLAEEFTRVTITKRS 201
LT + L + ++PT + +R+ ++
Sbjct: 489 LTVDELGDMDELFLNPTHFIQLSRLRAGSKN 519
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 89.6 bits (223), Expect = 4e-21
Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 50/201 (24%)
Query: 7 NAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
G+++ N +D +T ++A GD L VA G++
Sbjct: 288 RVGIQLGRGNYLTVD-RVSRTLATGIYAAGDCTG------------LLPLASVAAMQGRI 334
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEF- 124
G G + + + VA TVFT E VG+ + + +
Sbjct: 335 AMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAG-SVA--------ARTIMLP 385
Query: 125 ---------------FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169
F+ K+ C R + V+G + P A E+I A AV
Sbjct: 386 LRTNARAKMSEMRHGFV----------KIFC-RRSTGVVIGGVVVAPIASELILPIAVAV 434
Query: 170 KCGLTFETLESTVGIHPTLAE 190
+ +T L T+ ++P+L+
Sbjct: 435 QNRITVNELAQTLAVYPSLSG 455
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 88.0 bits (219), Expect = 1e-20
Identities = 54/221 (24%), Positives = 84/221 (38%), Gaps = 51/221 (23%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
AGV V I D +T+ PN++A GD ++P+ VA AG
Sbjct: 280 AAGVTV-NAQGAIVIDQGMRTSNPNIYAAGDCT------------DQPQFVYVAAAAGTR 326
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFF 125
A + G G +D + VFT + VG SE +A D +E
Sbjct: 327 AAINMTG-GDAALDLTAMPAVVFTDPQVATVGYSEAEAHH----DGIE-----TDSRTL- 375
Query: 126 IPQRNPQRC--------YLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFET 177
N R ++K+V E +++G+ + P AGE+IQ A A++ +T +
Sbjct: 376 -TLDNVPRALANFDTRGFIKLVIE-EGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQE 433
Query: 178 LESTVGIHPTLAE-------EFTRVTITKRSGEDPTPQSCC 211
L + + T+ E F + D SCC
Sbjct: 434 LADQLFPYLTMVEGLKLAAQTFNK---------DVKQLSCC 465
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 82.6 bits (205), Expect = 9e-19
Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 27/193 (13%)
Query: 7 NAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
N +++ +N+ D QT++ ++F GD + L A GK+
Sbjct: 283 NTSIELDKKNSPLFDELTLQTSVDHIFVAGDANN------------TLTLLHEAADDGKV 330
Query: 66 LAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYG-ADNLEIYHAYYKPTE 123
Q + + VFT + VGLS + E+LY D Y +
Sbjct: 331 AGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAAN-----YVVGQ 385
Query: 124 F-FIPQ-R----NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFET 177
F Q R + L V + + LG GP A + A A + +T +
Sbjct: 386 VSFEGQGRSRVMGKNKGLLNVYAD-RTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQA 444
Query: 178 LESTVGIHPTLAE 190
+ + HP + E
Sbjct: 445 MLTMPFYHPVIEE 457
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 79.1 bits (196), Expect = 2e-17
Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 51/202 (25%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
AGV + + I D+ +TN+ +++A+GDV +L VA G +
Sbjct: 280 KAGVAL-TDRKAIGVDDYMRTNVGHIYAIGDVNG------------LLQLAHVAEAQGVV 326
Query: 66 LAARLYG-NGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK---- 120
A + G T D++ + F GL+E++A G D
Sbjct: 327 AAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNE-GYD--------VVVAKF 377
Query: 121 P------------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAA 168
P F+ K+V + A ++LG H +G + E++ A
Sbjct: 378 PFTANAKAHGVGDPSGFV----------KLVAD-AKHGELLGGHLVGHDVAELLPELTLA 426
Query: 169 VKCGLTFETLESTVGIHPTLAE 190
+ LT L V HPT++E
Sbjct: 427 QRWDLTASELARNVHTHPTMSE 448
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 76.0 bits (188), Expect = 2e-16
Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 51/201 (25%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
NAG+ E +I D +T +P+++A+GDV+ P L A + G
Sbjct: 273 NAGLST-DERGRIPVDEHLRTRVPHIYAIGDVVR------------GPMLAHKASEEGIA 319
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK----P 121
+ G +DYQ + + V+T E VG +EE+ + + YK P
Sbjct: 320 AVEHMVR-GFGHVDYQAIPSVVYTHPEIAAVGYTEEELKA----QGIP-----YKVGKFP 369
Query: 122 ------------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169
TE FI KV+ A ++LG+H IG G+V+ A A+
Sbjct: 370 YSASGRARAMGETEGFI----------KVLAH-AKTDRILGVHGIGARVGDVLAEAALAL 418
Query: 170 KCGLTFETLESTVGIHPTLAE 190
+ E L HP+L+E
Sbjct: 419 FFKASAEDLGRAPHAHPSLSE 439
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 74.1 bits (183), Expect = 9e-16
Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 51/201 (25%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
GV+ + +I + TN+ V+A+GDV+ P L A + G
Sbjct: 288 KIGVET-DKLGRILVNERFSTNVSGVYAIGDVIP------------GPMLAHKAEEDGVA 334
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK----P 121
L G +DY V V+T E VG +EE+ +E +E Y+ P
Sbjct: 335 CVEYLAG-KVGHVDYDKVPGVVYTNPEVASVGKTEEQVKE----TGVE-----YRVGKFP 384
Query: 122 ------------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169
E + K++ E K+LG+H + PNAGE+I A A+
Sbjct: 385 FMANSRAKAIDNAEGLV----------KIIAE-KETDKILGVHIMAPNAGELIHEAAIAL 433
Query: 170 KCGLTFETLESTVGIHPTLAE 190
+ + E + HPT++E
Sbjct: 434 QYDASSEDIARVCHAHPTMSE 454
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 71.0 bits (175), Expect = 9e-15
Identities = 51/203 (25%), Positives = 81/203 (39%), Gaps = 51/203 (25%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
AGV + +++ D QT+I V+A+GDV+ P L A G
Sbjct: 309 KAGVVL-DSRGRVEIDRHFQTSIAGVYAIGDVVR------------GPMLAHKAEDEGVA 355
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK----P 121
+A + G ++Y + V+T E VG +EE+ + + YK P
Sbjct: 356 VAEIIAG-QAGHVNYDVIPGVVYTQPEVASVGKTEEELKA----AGVA-----YKIGKFP 405
Query: 122 ------------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169
T+ F+ K++ + +VLG H IG AGE+I A +
Sbjct: 406 FTANGRARAMLQTDGFV----------KILAD-KETDRVLGGHIIGFGAGEMIHEIAVLM 454
Query: 170 KCGLTFETLESTVGIHPTLAEEF 192
+ G + E L T HPT++E
Sbjct: 455 EFGGSSEDLGRTCHAHPTMSEAV 477
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 69.5 bits (171), Expect = 3e-14
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 51/203 (25%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
G+K+ I+ D + +T++PN+FA+GD++ P L A GK+
Sbjct: 279 QIGIKM-TNRGLIEVDQQCRTSVPNIFAIGDIVP------------GPALAHKASYEGKV 325
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK----P 121
A + G + +DY + VF+ E VG E++A++ + ++ P
Sbjct: 326 AAEAIAG-HPSAVDYVAIPAVVFSDPECASVGYFEQQAKD----EGID-----VIAAKFP 375
Query: 122 ------------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169
T+ F+ K+V ++G IGPNA ++I A+
Sbjct: 376 FAANGRALALNDTDGFL----------KLVVR-KEDGVIIGAQIIGPNASDMIAELGLAI 424
Query: 170 KCGLTFETLESTVGIHPTLAEEF 192
+ G+T E + T+ HPTL E
Sbjct: 425 EAGMTAEDIALTIHAHPTLGEIA 447
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 69.5 bits (171), Expect = 4e-14
Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 50/200 (25%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
+K+ ID + QT++ NV+A+GDV +P L A+ G+++
Sbjct: 277 CLDLKMNGAAIAID-ERCQTSMHNVWAIGDVAG------------EPMLAHRAMAQGEMV 323
Query: 67 AARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK----P- 121
A + G + + +A FT E VG + E+A + L+ P
Sbjct: 324 AEIIAG-KARRFEPAAIAAVCFTDPEVVVVGKTPEQASQ----QGLD-----CIVAQFPF 373
Query: 122 -----------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVK 170
F+ +VV +LG +G E+ +A +++
Sbjct: 374 AANGRAMSLESKSGFV----------RVVAR-RDNHLILGWQAVGVAVSELSTAFAQSLE 422
Query: 171 CGLTFETLESTVGIHPTLAE 190
G E + T+ HPTL E
Sbjct: 423 MGACLEDVAGTIHAHPTLGE 442
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 69.1 bits (170), Expect = 5e-14
Identities = 41/203 (20%), Positives = 67/203 (33%), Gaps = 53/203 (26%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
G+ + +D + +TNIPNVFA GD AV+
Sbjct: 280 EIGLSISKTGIVVD-ETMKTNIPNVFATGDANG------------LAPYYHAAVRMSIAA 326
Query: 67 AARLYGNGTTQMDYQNVAT---TVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK--- 120
A + +DY +V + T++T VG+ KA + +E
Sbjct: 327 ANNIMA-NGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARK----MGIE-----IVEAE 376
Query: 121 -P------------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAA 167
E + K++ E +++G IG ++ +I
Sbjct: 377 YNMEEDVSAQIYGQKEGVL----------KLIFE-RGSMRLIGAWMIGVHSQYLINELGL 425
Query: 168 AVKCGLTFETLESTVGIHPTLAE 190
AV GL + L S HP+ E
Sbjct: 426 AVAYGLNAKQLASFAEQHPSTNE 448
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 68.3 bits (168), Expect = 8e-14
Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 50/203 (24%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
V E + + +T+IP+V+A+GDV+ P L A G
Sbjct: 285 KINVAK-NERGFVKIGDHFETSIPDVYAIGDVVDKGPM-----------LAHKAEDEGVA 332
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK----P 121
A L G ++Y + ++T E VG SE++ ++ + + YK P
Sbjct: 333 CAEILAG-KPGHVNYGVIPAVIYTMPEVASVGKSEDELKK----EGVA-----YKVGKFP 382
Query: 122 ------------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169
+ F+ KV+ + A ++LG+H + AGE+I A+
Sbjct: 383 FNANSRAKAVSTEDGFV----------KVLVD-KATDRILGVHIVCTTAGELIGEACLAM 431
Query: 170 KCGLTFETLESTVGIHPTLAEEF 192
+ G + E + T HPT++E
Sbjct: 432 EYGASSEDVGRTCHAHPTMSEAL 454
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 68.3 bits (168), Expect = 9e-14
Identities = 57/201 (28%), Positives = 83/201 (41%), Gaps = 52/201 (25%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
AGVKV E I + +T++P V+A+GD P L A++ G +
Sbjct: 280 KAGVKV-DERGFIRVNARMETSVPGVYAIGDAAR------------PPLLAHKAMREGLI 326
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK----P 121
A G + DY V + V+T E+ VGL+EE+A+ + K P
Sbjct: 327 AAENAAG-KDSAFDY-QVPSVVYTSPEWAGVGLTEEEAKR----AGYK-----VKVGKFP 375
Query: 122 ------------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169
E + KVV + +LG+ +GP AGE+I A A+
Sbjct: 376 LAASGRALTLGGAEGMV----------KVVGD-EETDLLLGVFIVGPQAGELIAEAALAL 424
Query: 170 KCGLTFETLESTVGIHPTLAE 190
+ G T L TV HPTL+E
Sbjct: 425 EMGATLTDLALTVHPHPTLSE 445
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 67.5 bits (166), Expect = 1e-13
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 51/201 (25%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
G++V + ++ D++ + P++ VGDV P L A + G
Sbjct: 296 KIGLEV-DKRGRLVIDDQFNSKFPHIKVVGDVTF------------GPMLAHKAEEEGIA 342
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK----P 121
L G ++Y N+ + +++ E VG +EE+ +E ++ YK P
Sbjct: 343 AVEMLKT-GHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKE----AGID-----YKIGKFP 392
Query: 122 ------------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169
TE F+ K++ + + +++LG H IGPNAGE+I A+
Sbjct: 393 FAANSRAKTNQDTEGFV----------KILID-SKTERILGAHIIGPNAGEMIAEAGLAL 441
Query: 170 KCGLTFETLESTVGIHPTLAE 190
+ G + E + HPTL+E
Sbjct: 442 EYGASAEDVARVCHAHPTLSE 462
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 67.2 bits (165), Expect = 2e-13
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 51/201 (25%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
++GV + E I D+ T++P V+A+GDV+ L A + G +
Sbjct: 289 DSGVTL-DERGFIYVDDYCATSVPGVYAIGDVVR------------GAMLAHKASEEGVV 335
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK----P 121
+A R+ G QM+Y + ++T E VG +E+ + + + P
Sbjct: 336 VAERIAG-HKAQMNYDLIPAVIYTHPEIAGVGKTEQALKA----EGVA-----INVGVFP 385
Query: 122 ------------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169
T F+ KV+ + A +VLG+H IGP+A E++Q A A+
Sbjct: 386 FAASGRAMAANDTAGFV----------KVIAD-AKTDRVLGVHVIGPSAAELVQQGAIAM 434
Query: 170 KCGLTFETLESTVGIHPTLAE 190
+ G + E L V HP L+E
Sbjct: 435 EFGTSAEDLGMMVFAHPALSE 455
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 66.8 bits (164), Expect = 3e-13
Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 51/203 (25%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
AGV V + I+ D + +TN+P+++A+GD++ +P L AV G +
Sbjct: 295 KAGVAV-TDRGFIEVDKQMRTNVPHIYAIGDIVG------------QPMLAHKAVHEGHV 341
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEF- 124
A G D + + +T E VG +E A+ + F
Sbjct: 342 AAENCAG-HKAYFDARVIPGVAYTSPEVAWVGETELSAKA----SARK-----ITKANFP 391
Query: 125 ---------------FIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169
F K++ + A +++G +GPN G++I A+
Sbjct: 392 WAASGRAIANGCDKPFT----------KLIFD-AETGRIIGGGIVGPNGGDMIGEVCLAI 440
Query: 170 KCGLTFETLESTVGIHPTLAEEF 192
+ G + T+ HPTL E
Sbjct: 441 EMGCDAADIGKTIHPHPTLGESI 463
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 65.6 bits (161), Expect = 8e-13
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 51/203 (25%)
Query: 7 NAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
G+++ +I + QT IPN++A+GDV+ P L A G +
Sbjct: 291 ELGIEL-DPRGRIPVNTRFQTKIPNIYAIGDVVA------------GPMLAHKAEDEGII 337
Query: 66 LAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYK----P 121
+ G G +DY V + ++T E VG SEE+ +E + +E YK P
Sbjct: 338 CVEGMAG-GAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKE----EGIE-----YKVGKFP 387
Query: 122 ------------TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAV 169
T+ + K++ + + +VLG H +GP AGE++ A A+
Sbjct: 388 FAANSRAKTNADTDGMV----------KILGQ-KSTDRVLGAHILGPGAGEMVNEAALAL 436
Query: 170 KCGLTFETLESTVGIHPTLAEEF 192
+ G + E + HPTL+E F
Sbjct: 437 EYGASCEDIARVCHAHPTLSEAF 459
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 57.1 bits (139), Expect = 5e-10
Identities = 39/178 (21%), Positives = 70/178 (39%), Gaps = 17/178 (9%)
Query: 7 NAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP---VAVQA 62
GV++ A + + QT++ NV+A GDV + + + P +
Sbjct: 251 QLGVRIGETGAIWTN-EKMQTSVENVYAAGDVAE-TRHVIT----GRRVWVPLAPAGNKM 304
Query: 63 GKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY-HAYYKP 121
G + + + G A T F +E G GL+E +A + G D + A +P
Sbjct: 305 GYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKE-GYDVRTAFIKASTRP 363
Query: 122 TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLE 179
+ P + +LK V + ++LG+ +G + I AA + G T +
Sbjct: 364 H--YYP--GGREIWLKGVVDNET-NRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAF 416
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 56.8 bits (138), Expect = 7e-10
Identities = 38/181 (20%), Positives = 68/181 (37%), Gaps = 20/181 (11%)
Query: 7 NAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP---VAVQA 62
+AG+++ P A +D +T+ P++FA GD + P V KP P +A +
Sbjct: 265 DAGLELDPRGAIIVD-TRMRTSDPDIFAGGDCVT-IPNLVT----GKPGFFPLGSMANRQ 318
Query: 63 GKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY-HAYYKP 121
G+++ L T GL+ E A G D + ++ + +
Sbjct: 319 GRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTVEGALRE-GYDAVNVHVEQFDRA 377
Query: 122 TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEV---IQGYAAAVKCGLTFETL 178
F P L++V +R ++VLG+ + I A + T E +
Sbjct: 378 H--FYP--EKTIMTLQLVVDRPT-RRVLGIQGFSTLGDALTARINAVATMLASKPTVEDI 432
Query: 179 E 179
Sbjct: 433 S 433
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 54.5 bits (132), Expect = 5e-09
Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 18/179 (10%)
Query: 7 NAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP---VAVQA 62
+AG+ + K++ QT+ P ++AVGD + V + L P A +
Sbjct: 274 DAGLAIGELGGIKVN-AMMQTSDPAIYAVGDAVE-EQDFVT----GQACLVPLAGPANRQ 327
Query: 63 GKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY-HAYYKP 121
G++ A ++G Q A L G G +E++ ++ G ++Y H
Sbjct: 328 GRMAADNMFGREERYQGTQGTAICKVFDLAVGATGKNEKQLKQA-GIAFEKVYVHTASHA 386
Query: 122 TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP-NAGEVIQGYAAAVKCGLTFETLE 179
+ + P + K++ + + G +G + I A A + G+T E L+
Sbjct: 387 S--YYP--GAEVVSFKLLFDPVK-GTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQLQ 440
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 54.1 bits (131), Expect = 6e-09
Identities = 39/183 (21%), Positives = 75/183 (40%), Gaps = 25/183 (13%)
Query: 7 NAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP---VAVQA 62
AG+ + K++ + QT+ P+++A+GD + V E + P A +
Sbjct: 289 GAGLALGVRGTIKVN-EKFQTSDPHIYAIGDAIE-VKDFVT----ETETMIPLAWPANRQ 342
Query: 63 GKLLAARLYGNGTTQMDYQNVATT----VFTPLEYGCVGLSEEKAEELYGADNLEIY-HA 117
G++LA ++G+ + Y+ T VF L GL+E+ + L ++ A
Sbjct: 343 GRMLADIIHGHTDSL--YKGTLGTSVAKVFD-LTVATTGLNEKILKRL-NIPYEVVHVQA 398
Query: 118 YYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP-NAGEVIQGYAAAVKCGLTFE 176
+ P N +K++ + + K+ G +G + + A A+K LT
Sbjct: 399 NSHAG--YYP--NATPVLIKLIFNKDS-GKIYGAQTLGRDGVDKRMDVIATAIKANLTVL 453
Query: 177 TLE 179
L
Sbjct: 454 DLP 456
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 54.0 bits (131), Expect = 6e-09
Identities = 35/180 (19%), Positives = 59/180 (32%), Gaps = 24/180 (13%)
Query: 8 AGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP---VAVQAG 63
++ + +D QT++PNVFA+GD + + + P AV+ G
Sbjct: 251 KKIQRNLDQTIAVD-AYLQTSVPNVFAIGDCIS-VMNEPV----AETFYAPLVNNAVRTG 304
Query: 64 KLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY---HAYYK 120
++A L + T GL+E + I A
Sbjct: 305 LVVANNLEEKTHRFIGSLRTMGTKVGDYYLASTGLTETEGLFF-PQTLASIIVRQPAPPL 363
Query: 121 PTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP-NAGEVIQGYAAAVKCGLTFETLE 179
I K++ ++ Q+VLG N E I A +++ G T L
Sbjct: 364 QHGTEI--------LGKLIYDKVT-QRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLL 414
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 53.7 bits (130), Expect = 7e-09
Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 17/178 (9%)
Query: 8 AGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP---VAVQAG 63
+ + A ++ ++T+IP V+A+GD AV+ G
Sbjct: 298 GKIDLFRNGAFLVN-KRQETSIPGVYAIGDCAT-IYDNAT----RDTNYIALASNAVRTG 351
Query: 64 KLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY-HAYYKPT 122
+ A G + Q L GL+ EKA+ L G D KP
Sbjct: 352 IVAAHNACGTDLEGIGVQGSNGISIYGLHMVSTGLTLEKAKRL-GFDAAVTEYTDNQKPE 410
Query: 123 EFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP-NAGEVIQGYAAAVKCGLTFETLE 179
FI N +K+V ++ + +++LG + I ++ A++ G+T E L
Sbjct: 411 --FIEHGN-FPVTIKIVYDKDS-RRILGAQMAAREDVSMGIHMFSLAIQEGVTIEKLA 464
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 53.6 bits (130), Expect = 9e-09
Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 18/178 (10%)
Query: 8 AGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP---VAVQAG 63
+++ P K D + +T+ P+VFAVGD + + A + G
Sbjct: 253 GTLELHPNGLIKTD-EYMRTSEPDVFAVGDATL-IKYNPA----DTEVNIALATNARKQG 306
Query: 64 KLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY-HAYYKPT 122
+ L Q + ++ G++E A++L G + + Y
Sbjct: 307 RFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKL-GKETKAVTVVEDYLMD 365
Query: 123 EFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP-NAGEVIQGYAAAVKCGLTFETLE 179
F P + Q+ + K+V + ++LG + + I + A++ +T E L
Sbjct: 366 --FNP--DKQKAWFKLVYDPET-TQILGAQLMSKADLTANINAISLAIQAKMTIEDLA 418
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 53.6 bits (130), Expect = 9e-09
Identities = 36/185 (19%), Positives = 81/185 (43%), Gaps = 31/185 (16%)
Query: 7 NAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP---VAVQA 62
++ +K+ + ++ D +TN+PN++A+GD+ S + + + P P A +A
Sbjct: 248 SSNIKLDRKGFIPVN-DKFETNVPNIYAIGDIAT-SHYRHV----DLPASVPLAWGAHRA 301
Query: 63 GKLLAARLYGNGTTQMDYQNVATT----VFTPLEYGCVGLSEEKAEELYGADNLEI---Y 115
++A ++ GN T ++++ F + VG+ + ++ +E+
Sbjct: 302 ASIVAEQIAGNDT--IEFKGFLGNNIVKFFD-YTFASVGVKPNELKQF-DYKMVEVTQGA 357
Query: 116 HAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP-NAGEVIQGYAAAVKCGLT 174
HA Y P + +L+V + + +++L +G A + I + A+ LT
Sbjct: 358 HANYYPGNSPL--------HLRVYYDTSN-RQILRAAAVGKEGADKRIDVLSMAMMNQLT 408
Query: 175 FETLE 179
+ L
Sbjct: 409 VDELT 413
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 53.7 bits (130), Expect = 9e-09
Identities = 27/178 (15%), Positives = 59/178 (33%), Gaps = 18/178 (10%)
Query: 8 AGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP---VAVQAG 63
V ++ A D + ++ ++FA GD + P AV+ G
Sbjct: 254 GKVAMLDNGAIITD-EYMHSSNRDIFAAGDSAA-VHYNPT----NSNAYIPLATNAVRQG 307
Query: 64 KLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY-HAYYKPT 122
+L+ L + M Q+ + Y G++ A+ E+ Y+P
Sbjct: 308 RLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGINTALAKAN-NLKVSEVIIADNYRPE 366
Query: 123 EFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP-NAGEVIQGYAAAVKCGLTFETLE 179
F+ + + +V + + +LG + + + ++ T + L
Sbjct: 367 --FML--STDEVLMSLVYDPKT-RVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLA 419
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 53.3 bits (129), Expect = 1e-08
Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 18/179 (10%)
Query: 7 NAGVKVIPENA-KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTP---VAVQA 62
++ + A +++ QTN+ +V+A GD + E + P A +
Sbjct: 289 GTNIRTNHKGAIEVN-AYMQTNVQDVYAAGDCAT-HYHVIK----EIHDHIPIGTTANKQ 342
Query: 63 GKLLAARLYGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIY-HAYYKP 121
G+L + F L GL+E++A+ L + +
Sbjct: 343 GRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGLNEKEAKGL-HIPYKTVKVDSTNMA 401
Query: 122 TEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGP-NAGEVIQGYAAAVKCGLTFETLE 179
+ P N + YLK++ +++LG IG + I A A+ ++ LE
Sbjct: 402 G--YYP--NAKPLYLKLLYRSDT-KQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLE 455
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 47/280 (16%), Positives = 80/280 (28%), Gaps = 127/280 (45%)
Query: 17 AKIDSDNEQTN------IPNVFAVGDVLHFSPFPVLP---LFQEKPELTPVAVQAGKLLA 67
AK+ +N+ T I N + PF LF+ AV G
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAK-RPFDKKSNSALFR--------AVGEGN--- 153
Query: 68 ARLY----GNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTE 123
A+L G G T DY F EEL ++Y Y+
Sbjct: 154 AQLVAIFGGQGNTD-DY-------F---------------EEL-----RDLYQTYHVLVG 185
Query: 124 FFI---------------------------------PQRNPQRCYLKVVCERAAPQKVLG 150
I P P + YL + + P ++G
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL-LSIPISCP--LIG 242
Query: 151 M----HFI------GPNAGEV---IQGY---------AAAVKCGLTFETLEST------- 181
+ H++ G GE+ ++G A A+ ++E+ +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 182 ---VGIH-----PTLAEEFTRVTITKRSGED-PTPQSCCS 212
+G+ P + + + + + E P+P S
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Score = 34.6 bits (79), Expect = 0.020
Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 52/135 (38%)
Query: 78 MD-YQN--VATTVFTPLEYGCVGLSEEKAE----ELYGADNLEIYHAYYKPTEFFIPQRN 130
MD Y+ A V+ +A+ + YG L+I N
Sbjct: 1633 MDLYKTSKAAQDVW------------NRADNHFKDTYGFSILDIV------------INN 1668
Query: 131 PQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 190
P L +HF G + + Y+A + FET+ + +
Sbjct: 1669 P---------------VNLTIHFGGEKGKRIRENYSA-----MIFETIVDGKLKTEKIFK 1708
Query: 191 EFTRVTITKRSGEDP 205
E + T +
Sbjct: 1709 EINEHS-TSYTFRSE 1722
Score = 33.1 bits (75), Expect = 0.076
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 2 PPAVSNAGVKVIPENAKIDSDNEQTNIP---------NVF-AVGDVLHFSPF--PVLPLF 49
PP S G+ + AK S +Q+ IP N F V H S P L
Sbjct: 382 PPQ-SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-SHLLVPASDLI 439
Query: 50 QEKPELTPVAVQ-AGKLLAARLY--GNGTTQMDYQNVATTV 87
+ +L V K + +Y +G+ D + ++ ++
Sbjct: 440 NK--DLVKNNVSFNAKDIQIPVYDTFDGS---DLRVLSGSI 475
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 37.4 bits (87), Expect = 0.002
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 2 PPAVSNAGVKVIPENAKIDSDNEQTNIP---NVFAVGDVLHFSPFPVLPLFQEKPELTPV 58
P V++AG KV K+ N P N+F VG V P P+ P+ +
Sbjct: 257 PEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMM 316
Query: 59 AVQAGKLLA----ARLYGNGTTQMDYQNVAT 85
Q +A + N +
Sbjct: 317 IEQMAMAVAHNIVNDIRNNPDKYAPRLSAIC 347
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 36.6 bits (85), Expect = 0.004
Identities = 8/53 (15%), Positives = 15/53 (28%)
Query: 18 KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARL 70
+D N+FA G + P P+ P+ + +
Sbjct: 287 LVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNI 339
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 33.0 bits (76), Expect = 0.053
Identities = 5/27 (18%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 15 ENAKIDSDNE-QTNIPNVFAVGDVLHF 40
+ D+ +T++ ++A GD+ ++
Sbjct: 276 YENALVVDSHMKTSVDGLYAAGDIAYY 302
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 33.2 bits (77), Expect = 0.054
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 16 NAKIDSDNEQTNIPNVFAVGDV 37
+D + TN+ VFA GD+
Sbjct: 397 TLLVDHRTKMTNMDGVFAAGDI 418
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 32.2 bits (74), Expect = 0.097
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 25 QTNIPNVFAVGDVLHF 40
+TNI FA GD+ +
Sbjct: 274 ETNIEGFFAAGDICTY 289
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 32.2 bits (74), Expect = 0.11
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 25 QTNIPNVFAVGDVLHF 40
T+IP V+A GD++ +
Sbjct: 276 ATSIPGVYACGDIVTY 291
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.11
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 75 TTQ----MDYQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIP--- 127
TT+ D+ + ATT L++ + L+ ++ + L L+ +P + +P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDC-----RPQD--LPREV 322
Query: 128 -QRNPQRCYL 136
NP+R +
Sbjct: 323 LTTNPRRLSI 332
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 32.2 bits (74), Expect = 0.12
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 25 QTNIPNVFAVGDV-LHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTT 76
+T+I +++A GDV + P L +A + G++ G +
Sbjct: 254 ETSIKDIYACGDVAEFYGKN---------PGLINIANKQGEVAGLNACGEDAS 297
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Length = 189
Score = 31.2 bits (71), Expect = 0.15
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 36 DVLHFSPFPVL-----PLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQ 81
D S PV+ PLF + + + K++ R + +G Q+ Y
Sbjct: 141 DEFRLSIHPVVLGEGKPLFIDVKQRINL-----KMVNTRTFSSGVVQIVYH 186
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 31.7 bits (72), Expect = 0.17
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 13/52 (25%)
Query: 18 KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAAR 69
++D + QT+ P VFA GD++ T +V GK A+
Sbjct: 463 EVDPETMQTSEPWVFAGGDIVG------------MANTTVESVNDGK-QASW 501
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 31.0 bits (71), Expect = 0.22
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 25 QTNIPNVFAVGDV-LHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQNV 83
+T+ N++A+GD L P + + LA L G +Q+ Y +
Sbjct: 266 RTSHANIYALGDCAEVDG--LNLLYVM--P-----LMACARALAQTLAG-NPSQVAYGPM 315
Query: 84 ATTVFTP 90
TV TP
Sbjct: 316 PVTVKTP 322
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 31.1 bits (71), Expect = 0.23
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 139 VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 193
V RA V G N +Q A+ T STVG HPT EF
Sbjct: 32 VIGRAVEIGVKKFMITGGN----LQDSKDALHLAQTNGMFFSTVGCHPTRCGEFE 82
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 30.6 bits (70), Expect = 0.28
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 139 VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198
+ ERA V M G + Q + + L +T G+HP A+ + +
Sbjct: 22 IVERALEAGVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPHDAKAWDTDSER 81
Query: 199 K 199
+
Sbjct: 82 Q 82
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 30.6 bits (70), Expect = 0.30
Identities = 3/13 (23%), Positives = 8/13 (61%)
Query: 25 QTNIPNVFAVGDV 37
+T+ N++ G+
Sbjct: 261 RTSEKNIYLAGET 273
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 30.6 bits (70), Expect = 0.31
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 25 QTNIPNVFAVGDV 37
QT +FA GDV
Sbjct: 254 QTTARGIFACGDV 266
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 30.6 bits (70), Expect = 0.34
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 25 QTNIPNVFAVGDV 37
TNIP +FA GDV
Sbjct: 273 YTNIPMLFAAGDV 285
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 30.6 bits (70), Expect = 0.34
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 25 QTNIPNVFAVGDV 37
+T++P VFA GD
Sbjct: 276 RTSVPGVFAAGDC 288
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 30.6 bits (70), Expect = 0.34
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 25 QTNIPNVFAVGDV 37
QT++ +FA GD+
Sbjct: 273 QTSVAGLFAAGDL 285
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 30.4 bits (69), Expect = 0.35
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 136 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVK-CGLTFETLESTVGIHPTLAEEFT 193
+ VV +RA + + + + K LT L +T+G+HPT E
Sbjct: 54 IDVVLQRAERNGLSHIIITSGCLNDFKKAIEIINKYQNLTNIKLVTTIGVHPTRTNELK 112
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 30.6 bits (70), Expect = 0.36
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 22 DNEQTNIPNVFAVGDV 37
++T++P V+A GDV
Sbjct: 274 SRQRTSVPGVYAAGDV 289
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 30.2 bits (69), Expect = 0.39
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 18 KIDSDNEQTNIPNVFAVGDV 37
K + T++P FA GDV
Sbjct: 289 KTVPGSSLTSVPGFFAAGDV 308
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 30.2 bits (69), Expect = 0.42
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 25 QTNIPNVFAVGDV 37
+TN+ +FA GD+
Sbjct: 270 KTNVQGLFAAGDI 282
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 30.2 bits (69), Expect = 0.45
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 18 KIDSDNEQTNIPNVFAVGDV 37
QT++P VFA GDV
Sbjct: 277 VTKPGTTQTSVPGVFAAGDV 296
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 30.0 bits (68), Expect = 0.52
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 18 KIDSDNEQTNIPNVFAVGDV 37
ID+ E T++ VFA GD
Sbjct: 471 IIDAKCE-TSVKGVFAAGDC 489
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 29.8 bits (68), Expect = 0.54
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 25 QTNIPNVFAVGDV 37
+TN+ VFA GD
Sbjct: 266 ETNVKGVFAAGDC 278
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 29.8 bits (68), Expect = 0.54
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 18 KIDSDNEQTNIPNVFAVGDV 37
+ T++P VFA GD+
Sbjct: 270 LVQGRTTSTSLPGVFAAGDL 289
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 29.8 bits (68), Expect = 0.55
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 25 QTNIPNVFAVGDV 37
QT+IP VFA GDV
Sbjct: 275 QTSIPGVFAAGDV 287
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 29.4 bits (67), Expect = 0.90
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 25 QTNIPNVFAVGDV-LHFSPF 43
T+ P++ A+GD L S
Sbjct: 264 LTSDPHISAIGDCALFESVR 283
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 29.5 bits (67), Expect = 0.90
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 25 QTNIPNVFAVGDV-LHFSPF 43
+T P+V+A+GDV +P
Sbjct: 262 RTTCPDVYALGDVTRQRNPL 281
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 29.1 bits (66), Expect = 1.0
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 25 QTNIPNVFAVGDV-LHFSPF 43
QT+ P + AVGD S
Sbjct: 273 QTSDPLIMAVGDCARFHSQL 292
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 29.0 bits (66), Expect = 1.1
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 139 VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTIT 198
V A V G+ G N ++ A K + + ST G+HP + ++ T
Sbjct: 24 VVACAFDAGVNGLLITGTN----LRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEE 79
Query: 199 K 199
Sbjct: 80 A 80
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 29.1 bits (66), Expect = 1.1
Identities = 7/20 (35%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 25 QTNIPNVFAVGDV-LHFSPF 43
+T++ +V+A+GD H + F
Sbjct: 274 RTSLTDVYAIGDCAAHANDF 293
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 29.1 bits (66), Expect = 1.1
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 25 QTNIPNVFAVGDV 37
+T+ +V+A+GD
Sbjct: 257 RTSAKDVYAIGDC 269
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 29.2 bits (65), Expect = 1.2
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 5 VSNAGVKVIPENAK-----IDSDNEQTNIPNVFAVGDVLHFSPF 43
S +PE+ K N T + ++ D + S
Sbjct: 424 ASGPDEAWVPEDYKVRAANGKVYNRMTTVEGLWTCADGVGASGH 467
>1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker,
cystine knot motif; HET: HYP CGU; NMR {Conus geographus}
SCOP: g.3.6.1
Length = 34
Score = 26.2 bits (57), Expect = 1.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 129 RNPQRCYLKVVCERAAPQKVLGMH 152
R P +C + + C R PQK +G H
Sbjct: 8 RCPPQCCMGLRCGRGNPQKCIGAH 31
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 28.5 bits (63), Expect = 1.5
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 136 LKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVK-CGLTFETLESTVGIHPTLAEEFTR 194
+ ERAA + V G + E L+ L T+G+HP EF
Sbjct: 40 YVKLLERAAQRHVKNALVTGSSIAESQSAIELVSSVKDLSPLKLYHTIGVHPCCVNEFAD 99
Query: 195 VTITKRSGEDPTPQSC 210
+ ++ S
Sbjct: 100 ASQGDKASASIDNPSM 115
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 27.9 bits (63), Expect = 2.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 25 QTNIPNVFAVGDVLHF 40
T VFAVGDV +
Sbjct: 264 ATLAKGVFAVGDVASW 279
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 27.7 bits (62), Expect = 2.9
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 139 VCERAAPQKVLGMHFIGP----NAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 192
+ P++V G+HF P EV+ G A A + L + G P
Sbjct: 131 EIKN--PERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHST 186
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.9 bits (62), Expect = 3.0
Identities = 10/104 (9%), Positives = 27/104 (25%), Gaps = 14/104 (13%)
Query: 103 AEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCE---RAAPQKVLGMHFIGPNAG 159
E+L+ +P+ + ++K + + P LG+ NA
Sbjct: 2875 LEQLFTPSAFNPDFPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPI-WLGLP---ENAE 2930
Query: 160 EVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITKRSGE 203
++ + + + + + E
Sbjct: 2931 SLLL-------SNKARKMINDLQKMQSSEEDGEDDQVSGSSKKE 2967
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 27.4 bits (61), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 2 PPAVSNAGVKVIPENAKIDSDNEQTNI--PNVFAVGDV 37
PA+ N+ ++ + I +D +I NV+AVGD
Sbjct: 271 NPALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDA 308
>2f2h_A Putative family 31 glucosidase YICI; BETA8alpha8 barrel, hydrolase;
HET: MPO XTG; 1.95A {Escherichia coli} SCOP: b.150.1.1
b.30.5.11 b.71.1.4 c.1.8.13 PDB: 1xsj_A 1xsi_A 1xsk_A*
1we5_A*
Length = 773
Score = 27.4 bits (61), Expect = 3.9
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 14/77 (18%)
Query: 105 ELYGADNLEIYHAYYKPTEFFIPQR-------NPQRCYLKVVCERA------APQKVLGM 151
E + D YK F++ R +PQ +V E+ + L
Sbjct: 180 ETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQFSVESEYLEY 239
Query: 152 HFI-GPNAGEVIQGYAA 167
I GP V+ Y
Sbjct: 240 FVIDGPTPKAVLDRYTR 256
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex,
oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP:
a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A*
1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A*
3hdh_A*
Length = 302
Score = 26.8 bits (60), Expect = 4.9
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 145 PQKVLGMHFIGP----NAGEVIQGYAAAVKCGLTFETLES---TVGIHPTLAEEF 192
+ G+HF P EVI+ + K TFE+L +G HP ++
Sbjct: 151 QDRFAGLHFFNPVPVMKLVEVIKTPMTSQK---TFESLVDFSKALGKHPVSCKDT 202
>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like
cysteine protease, capsid protein, core protein; 1.9A
{Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB:
2j92_A 2wv4_A 2wv5_A
Length = 209
Score = 26.6 bits (58), Expect = 5.1
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 138 VVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVK 170
V+ + A ++G H AG GY + V
Sbjct: 168 VLAKDGADTFIVGTHS----AGGNGVGYCSCVS 196
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 26.6 bits (58), Expect = 6.0
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 100 EEKAEELYGADN-LEIYHAYYKPTEFFIPQRNPQRCYLKVVCERA 143
E K E D+ L+++ Y K T PQ + L + ER
Sbjct: 59 ERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERC 103
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 26.7 bits (60), Expect = 6.3
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 139 VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI 197
V + + +G N ++ ++ T + + +VG+HP A+E I
Sbjct: 32 VISSFEENNIEFVVNVGVN----LEDSKKSLDLSKTSDRIFCSVGVHPHDAKEVPEDFI 86
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 26.4 bits (59), Expect = 6.5
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 145 PQKVLGMHFIGP----NAGEVIQGYA 166
P + LG+H++ P E++
Sbjct: 122 PSRFLGVHWMNPPHVMPLVEIVISRF 147
>2hal_A Hepatitis A protease 3C; 3C protease, inhibitor design; HET: BBL;
1.35A {Hepatitis a virus} SCOP: b.47.1.4 PDB: 2h6m_A*
2h9h_A* 2cxv_A* 2a4o_A* 1hav_A 1qa7_A*
Length = 212
Score = 26.2 bits (57), Expect = 6.7
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 138 VVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVK 170
V ++ +LG+H + A V
Sbjct: 177 VSSNQSIQNAILGIH-VAGGNS---ILVAKLVT 205
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 26.3 bits (59), Expect = 6.8
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 139 VCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTI 197
V RA V M +G N A+K ++ L +G HP A +FT +
Sbjct: 21 VITRAREAGVDRMFVVGFN----KSTIERAMKLIDEYDFLYGIIGWHPVDAIDFTEEHL 75
>1zat_A L,D-transpeptidase; L,D-transpeptidation, peptidoglycan,
beta-lactam insensitive transpeptidase, antibiotic
resistance, transferase; 2.40A {Enterococcus faecium}
SCOP: b.160.1.1 d.335.1.1 PDB: 2hkl_A
Length = 250
Score = 26.3 bits (58), Expect = 7.3
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 94 GCVGLSEEKAEELY 107
GC+ +EL+
Sbjct: 225 GCINTPPSVMKELF 238
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 26.5 bits (59), Expect = 7.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 68 ARLYGNGTTQMDYQNVATTVFTPLE--YGCVGLSEEKAEE 105
A +GTT+++Y +V T P + YG + +KAE
Sbjct: 554 AFRDADGTTRLEYSDVKITTLPPAKRVYGGEADAADKAEA 593
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase,
IPNV; 3.80A {Infectious pancreatic necrosis virus}
Length = 770
Score = 26.2 bits (56), Expect = 9.3
Identities = 14/84 (16%), Positives = 26/84 (30%)
Query: 99 SEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNA 158
+ + D L Y + E F+P +R + K L A
Sbjct: 548 PPIRPGKAVELDLLGWSAIYSRQMEMFVPVLENERLIASAAYPKGLENKALARKPGAEIA 607
Query: 159 GEVIQGYAAAVKCGLTFETLESTV 182
++++ A + G LE+
Sbjct: 608 YQIVRYEAIRLVGGWNNPLLETAA 631
>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs,
transferase; 2.40A {Infectious bursal disease virus}
PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A
Length = 852
Score = 26.2 bits (56), Expect = 9.6
Identities = 11/65 (16%), Positives = 22/65 (33%)
Query: 118 YYKPTEFFIPQRNPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFET 177
Y K ++P + +R + + K L A +V++ A + G +
Sbjct: 584 YSKDLGIYVPVLDKERLFCSAAYPKGVENKSLKSKVGIEQAYKVVRYEALRLVGGWNYPL 643
Query: 178 LESTV 182
L
Sbjct: 644 LNKAC 648
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.405
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,282,575
Number of extensions: 191307
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 116
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.8 bits)