RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11186
(212 letters)
>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 133
Score = 124 bits (313), Expect = 2e-37
Identities = 75/132 (56%), Positives = 99/132 (75%)
Query: 80 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVV 139
Y NV TTVFTPLEYGC GLSEEKA E +G +N+E+YH+++ P E+ +P R+ +CY KV+
Sbjct: 1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVI 60
Query: 140 CERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTRVTITK 199
C ++V+G H +GPNAGEV QG+AAA+KCGLT + L+ST+GIHP AE FT +++TK
Sbjct: 61 CNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLSVTK 120
Query: 200 RSGEDPTPQSCC 211
RSG D CC
Sbjct: 121 RSGGDILQSGCC 132
>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 123
Score = 91.2 bits (226), Expect = 2e-24
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 80 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVV 139
Y N+ + +++ E VG +EE+ +E + + ++K++
Sbjct: 1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKT---NQDTEGFVKIL 57
Query: 140 CERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 192
+ +++LG H IGPNAGE+I A++ G + E + HPTL+E F
Sbjct: 58 IDSKT-ERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAF 109
>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium
falciparum [TaxId: 5833]}
Length = 119
Score = 89.9 bits (222), Expect = 7e-24
Identities = 43/118 (36%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 80 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQR---NPQRCYL 136
Y+ + T +F+ G +GLSEE A ++YG +N++IY + + F + ++ YL
Sbjct: 1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYL 60
Query: 137 KVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFTR 194
K+VC + + G+H IG NA E++QG+A A+K T + + T+ IHPT AEEF
Sbjct: 61 KLVC-VGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT 117
>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia
fasciculata [TaxId: 5656]}
Length = 128
Score = 90.1 bits (223), Expect = 7e-24
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 80 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVV 139
+ VA VF+ G G EE A + Y D + +Y + + P I ++ +++V
Sbjct: 1 HTKVACAVFSIPPMGVCGYVEEDAAKKY--DQVAVYESSFTPLMHNISGSTYKKFMVRIV 58
Query: 140 CERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 193
A +VLG+H +G ++ E+IQ A +K G +T+G+HPT AEE
Sbjct: 59 T-NHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELC 111
>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 124
Score = 90.0 bits (223), Expect = 7e-24
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 80 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVV 139
Y + ++T E VG +E+ + A N + + + + N ++KV+
Sbjct: 1 YDLIPAVIYTHPEIAGVGKTEQALKAEGVAIN--VGVFPFAASGRAMAA-NDTAGFVKVI 57
Query: 140 CERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 192
+ +VLG+H IGP+A E++Q A A++ G + E L V HP L+E
Sbjct: 58 ADAKT-DRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEAL 109
>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia
coli [TaxId: 562]}
Length = 115
Score = 89.1 bits (220), Expect = 1e-23
Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 2/114 (1%)
Query: 80 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVV 139
Y N+ T VF+ G VGL+E +A E YG D +++Y + + + + Q C +K+V
Sbjct: 1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAM-YTAVTTHRQPCRMKLV 59
Query: 140 CERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 193
C + +K++G+H IG E++QG+A A+K G T + ++TV IHPT AEEF
Sbjct: 60 CVGS-EEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFV 112
>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 115
Score = 86.4 bits (213), Expect = 1e-22
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Query: 80 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVV 139
Y N+ T VF+ G VGL+E++A YG +N++ Y + P + +R + V
Sbjct: 1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVC 60
Query: 140 CERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEFT 193
+ +KV+G+H G E++QG+A AVK G T ++TV IHPT +EE
Sbjct: 61 ANK--EEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELV 112
>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 123
Score = 83.1 bits (205), Expect = 2e-21
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 80 YQNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVV 139
Y V V+T E VG +EE+ +E + + + +K++
Sbjct: 1 YDKVPGVVYTNPEVASVGKTEEQVKETGV--EYRVGKFPFMANSRAKAI-DNAEGLVKII 57
Query: 140 CERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 192
E+ K+LG+H + PNAGE+I A A++ + E + HPT++E
Sbjct: 58 AEKET-DKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAI 109
>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M
oxidoreductase/carboxylase {Xanthobacter sp., py2
[TaxId: 35809]}
Length = 140
Score = 82.1 bits (202), Expect = 1e-20
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 16/135 (11%)
Query: 81 QNVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYY---KPTEFFIPQR-------- 129
+N + T E +G+ EE+A R
Sbjct: 2 KNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGK 61
Query: 130 --NPQRCYLKVVCERAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGI--H 185
+ K+V + +KVLG H +G A + Q +K GLT + L + +
Sbjct: 62 GTAHMSGFQKIVIDAK-TRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLN 120
Query: 186 PTLAEEFTRVTITKR 200
PT + +R+ +
Sbjct: 121 PTHFIQLSRLRAGSK 135
>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase
{Neisseria meningitidis [TaxId: 487]}
Length = 128
Score = 77.3 bits (190), Expect = 4e-19
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCER 142
+ +T E VG +E A+ + + + K++
Sbjct: 4 IPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIAN---GCDKPFTKLIF-D 59
Query: 143 AAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 192
A +++G +GPN G++I A++ G + T+ HPTL E
Sbjct: 60 AETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESI 109
>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 118
Score = 77.1 bits (189), Expect = 5e-19
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 82 NVATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCE 141
VA TVFT E VG+ + + ++ + + R +
Sbjct: 3 TVAATVFTRPEIAAVGVPQSVIDA----GSVAARTIMLPLRTNARAKMSEMRHGFVKIFC 58
Query: 142 RAAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAEEF 192
R + V+G + P A E+I A AV+ +T L T+ ++P+L+
Sbjct: 59 RRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSI 109
>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 115
Score = 77.0 bits (189), Expect = 5e-19
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCER 142
+ VF+ E VG E++A++ + + N +LK+V +
Sbjct: 2 IPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALAL---NDTDGFLKLVVRK 58
Query: 143 AAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 190
++G IGPNA ++I A++ G+T E + T+ HPTL E
Sbjct: 59 E-DGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGE 105
>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 123
Score = 73.6 bits (180), Expect = 1e-17
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 83 VATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCER 142
+A FT E VG + E+A + L+ A + + V R
Sbjct: 4 IAAVCFTDPEVVVVGKTPEQASQ----QGLDCIVAQFPFAANGRAMSLESKSGFVRVVAR 59
Query: 143 AAPQKVLGMHFIGPNAGEVIQGYAAAVKCGLTFETLESTVGIHPTLAE 190
+LG +G E+ +A +++ G E + T+ HPTL E
Sbjct: 60 RDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGE 107
>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis
[TaxId: 1351]}
Length = 126
Score = 66.9 bits (163), Expect = 4e-15
Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 8/116 (6%)
Query: 84 ATTVFTPLEYGCVGLSEEKAEELYGADNLEIYHAYYKPTEFFIPQRNPQRCYLKVVCERA 143
VF ++ G++E A++L E + Q+ + K+V +
Sbjct: 7 GLAVFDY-KFASTGINEVMAQKLG----KETKAVTVVEDYLMDFNPDKQKAWFKLVYDPE 61
Query: 144 APQKVLGMHFIGPN-AGEVIQGYAAAVKCGLTFETLESTV-GIHPTLAEEFTRVTI 197
++LG + I + A++ +T E L P + + +
Sbjct: 62 T-TQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINT 116
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 62.8 bits (151), Expect = 9e-13
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 11/61 (18%)
Query: 19 IDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQM 78
+D EQTN+P ++A+GD+L K ELTPVA+QAG+LLA RLYG T +
Sbjct: 186 PVTDEEQTNVPYIYAIGDILEG-----------KLELTPVAIQAGRLLAQRLYGGSTVKC 234
Query: 79 D 79
D
Sbjct: 235 D 235
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 56.9 bits (136), Expect = 1e-10
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
AGV+V A +TN+ N++A+GDV ++ LTPVA+ G
Sbjct: 180 KAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVT------------DRVMLTPVAINEGAAF 227
Query: 67 AARLYGNGTTQMD 79
++ N D
Sbjct: 228 VDTVFANKPRATD 240
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 54.1 bits (129), Expect = 1e-09
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
G++ + I + + TN+ ++AVGDV K LTPVA+ AG+ L
Sbjct: 160 KLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCG------------KALLTPVAIAAGRKL 207
Query: 67 AARLYGNGT-TQMD 79
A RL+ +++D
Sbjct: 208 AHRLFEYKEDSKLD 221
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 50.2 bits (119), Expect = 2e-08
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
G+K+ +T++PN+FA+GD++ P L A GK+
Sbjct: 162 QIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVP------------GPALAHKASYEGKVA 209
Query: 67 AARLYGNGTTQMDY 80
A + G+ + +DY
Sbjct: 210 AEAIAGHP-SAVDY 222
>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 233
Score = 46.2 bits (108), Expect = 6e-07
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 12/66 (18%)
Query: 11 KVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARL 70
++ N +T ++A GD L VA G++
Sbjct: 177 QLGRGNYLTVDRVSRTLATGIYAAGDCT------------GLLPLASVAAMQGRIAMYHA 224
Query: 71 YGNGTT 76
G G +
Sbjct: 225 LGEGVS 230
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 45.8 bits (107), Expect = 9e-07
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 12 VIPENAKIDSDNE-QTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARL 70
V+ +N + D +TN+ N++A+GDV + + LTPVA+ L +
Sbjct: 183 VMIKNGGVQVDEYSRTNVSNIYAIGDVTN------------RVMLTPVAINEAAALVDTV 230
Query: 71 YGNGTTQ 77
+G +
Sbjct: 231 FGTTPRK 237
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 45.7 bits (107), Expect = 1e-06
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
AGV V +TN+P+++A+GD++ +P L AV G +
Sbjct: 170 KAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVG------------QPMLAHKAVHEGHVA 217
Query: 67 AARLYGN 73
A G+
Sbjct: 218 AENCAGH 224
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 45.0 bits (105), Expect = 2e-06
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 15/59 (25%)
Query: 22 DNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDY 80
+ QT++PNV+AVGD++ P A ++G A + G ++ Y
Sbjct: 217 EYLQTSVPNVYAVGDLIG------------GPMEMFKARKSGCYAARNVMGE---KISY 260
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 43.5 bits (101), Expect = 6e-06
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 6 SNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKL 65
+++GV + D T++P V+A+GDV+ L A + G +
Sbjct: 169 ADSGVTLDERGFIYVDDYCATSVPGVYAIGDVV------------RGAMLAHKASEEGVV 216
Query: 66 LAARLYGNGTTQMD 79
+A R+ G+ QM+
Sbjct: 217 VAERIAGHK-AQMN 229
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 42.5 bits (99), Expect = 1e-05
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
GV+ + ++ TN+ V+A+GDV+ P L A + G
Sbjct: 162 KIGVETDKLGRILVNERFSTNVSGVYAIGDVI------------PGPMLAHKAEEDGVAC 209
Query: 67 AARLYG 72
L G
Sbjct: 210 VEYLAG 215
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 41.5 bits (96), Expect = 3e-05
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
AGVK + + + TNI ++AVGD ELTPVAV AG+ L
Sbjct: 156 AAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTG------------AVELTPVAVAAGRRL 203
Query: 67 AARLYGN 73
+ RL+ N
Sbjct: 204 SERLFNN 210
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 41.0 bits (95), Expect = 3e-05
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 12/66 (18%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLL 66
G++V + D + P++ VGDV P L A + G
Sbjct: 174 KIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV------------TFGPMLAHKAEEEGIAA 221
Query: 67 AARLYG 72
L
Sbjct: 222 VEMLKT 227
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 38.1 bits (87), Expect = 4e-04
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 22 DNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNGTTQMDYQ 81
+N++T++ N++AVGD + +LY +
Sbjct: 180 ENQRTSVNNIYAVGDCCMVKKSKEIEDLN----------------LLKLYNEERYLNKKE 223
Query: 82 NVATTVFTPLEYGCVGLSEE--KAEELYGA 109
NV +F ++ V ++ A+ L+
Sbjct: 224 NVTEDIFYNVQLTPVAINAGRLLADRLFLK 253
>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase
{Pseudomonas putida [TaxId: 303]}
Length = 185
Score = 37.1 bits (84), Expect = 7e-04
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 8 AGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLA 67
+ + +N + +++ QT+ P + AVGD F + + + E P A++ + +A
Sbjct: 122 SAAGLQVDNGIVINEHMQTSDPLIMAVGDCARF-HSQLYDRWV-RIESVPNALEQARKIA 179
Query: 68 ARLYG 72
A L G
Sbjct: 180 AILCG 184
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 36.9 bits (84), Expect = 8e-04
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 22 DNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYGNG 74
+ QT++ NV+A+GDV +P L A+ G+++A + G
Sbjct: 176 ERCQTSMHNVWAIGDVA------------GEPMLAHRAMAQGEMVAEIIAGKA 216
>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase
{Pyrococcus furiosus [TaxId: 2261]}
Length = 167
Score = 36.6 bits (83), Expect = 8e-04
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 12 VIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLY 71
+ + DN +T+ +V+A+GD + + A++ ++LA L
Sbjct: 114 IHTGRGILIDDNFRTSAKDVYAIGDCAEY-SGIIAG-------TAKAAMEQARVLADILK 165
Query: 72 G 72
G
Sbjct: 166 G 166
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 311
Score = 31.4 bits (70), Expect = 0.062
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 13 IPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLA 67
E+ + + N++ G + + L + P +G A
Sbjct: 253 HAEHDVVIHSGAYAGVDNMYFAGMEVAE----LDGLNRMGPTFGA-MALSGVHAA 302
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 31.5 bits (69), Expect = 0.071
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 10/55 (18%)
Query: 18 KIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPELTPVAVQAGKLLAARLYG 72
+ + D + + V+ G+ + A +G A L
Sbjct: 296 RYEYDQLRAPVGRVYFTGEHTS----------EHYNGYVHGAYLSGIDSAEILIN 340
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 373
Score = 29.8 bits (65), Expect = 0.23
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 2 PPAVSNAGVKVIPENAKIDSDNE-QTNIPNVFAVGDVLH 39
V ++ +D+ ++ + N+P +F G+
Sbjct: 309 FLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHRG 347
>d1ag7a_ g.3.6.1 (A:) Conotoxin {Synthetic, based on Conus
geographus, GS}
Length = 34
Score = 26.2 bits (57), Expect = 0.45
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 129 RNPQRCYLKVVCERAAPQKVLGMH 152
R P +C + + C R PQK +G H
Sbjct: 8 RCPPQCCMGLRCGRGNPQKCIGAH 31
>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase
{Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 192
Score = 28.0 bits (61), Expect = 0.74
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 18 KIDSDNEQTNIPNVFAVGDV 37
QT++P VFA GDV
Sbjct: 144 VTKPGTTQTSVPGVFAAGDV 163
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 27.5 bits (60), Expect = 0.94
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 7 NAGVKVIPENAKIDSDNEQTNIPNVFAVGDV 37
N +KV + I + QT+IP VFA GDV
Sbjct: 134 NGYIKV---QSGIHGNATQTSIPGVFAAGDV 161
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 26.9 bits (58), Expect = 2.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 13 IPENAKIDSDNEQTNIPNVFAVGDV 37
I A++ S+ I ++A G+V
Sbjct: 263 IDTKAEVKSEKTGKPITGLYAAGEV 287
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 26.9 bits (58), Expect = 2.2
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 13/75 (17%)
Query: 69 RLYGNGTTQMDYQNVATTVFTPLEY-GCVGLSEEKAEELYGAD------------NLEIY 115
+G + D N + L + G +E+ A +Y AD N +
Sbjct: 40 DFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVT 99
Query: 116 HAYYKPTEFFIPQRN 130
A + + RN
Sbjct: 100 SALVSNGDLVLFDRN 114
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
(KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 226
Score = 26.4 bits (58), Expect = 2.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 157 NAGEVIQGYAAAVKCGLTFET 177
A +V G++ A+ TF T
Sbjct: 205 RATDVALGWSIALGSPFTFAT 225
>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase
{Pseudomonas nautica [TaxId: 2743]}
Length = 166
Score = 25.9 bits (56), Expect = 2.6
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 40 FSPFPVLPLFQEKPELTPVAVQAGKLL--AARLYGNGTT 76
F P P P + ELT V+ GK+ RL +
Sbjct: 11 FEPIPKYPPVIDGNELTQAKVELGKMEFFEPRLSSSHLI 49
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1,
Pot1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 25.1 bits (55), Expect = 4.2
Identities = 7/50 (14%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 6 SNAGVKVIPENAKIDSDNEQTNIPNVFAVGDVLHFSPFPVLPLFQEKPEL 55
+N + + S N +P ++ GD++ F + +++++ +
Sbjct: 48 TNVKLTC-----LLFSGNY-EALPIIYKNGDIVRFHRL-KIQVYKKETQG 90
>d1eb7a1 a.3.1.5 (A:1-164) Di-heme cytochrome c peroxidase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 164
Score = 25.5 bits (55), Expect = 4.3
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 40 FSPFPVLPLFQEKPELTPVAVQAGKLL--AARLYGNGTTQ 77
F P P ++ + GK L RL +
Sbjct: 11 FKPIPEQVTELRGQPISEQQRELGKKLFFDPRLSRSHVLS 50
>d1zata1 b.160.1.1 (A:339-466) L,D-transpeptidase, C-terminal,
catalytic domain {Enterococcus faecium [TaxId: 1352]}
Length = 128
Score = 24.8 bits (53), Expect = 5.0
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 71 YGNGTTQMDYQNVATTVFTPLEYGCVGLSEEKAEELY 107
G + + T +GC+ +EL+
Sbjct: 80 VGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELF 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.405
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 789,571
Number of extensions: 34885
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 43
Length of query: 212
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,295,466
Effective search space: 169706046
Effective search space used: 169706046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)