Query psy11187
Match_columns 115
No_of_seqs 71 out of 73
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 20:19:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00570 AWS associated with 99.2 1.7E-11 3.6E-16 79.0 2.9 35 55-91 1-40 (51)
2 KOG4442|consensus 97.2 0.00019 4E-09 66.0 2.2 57 31-87 38-103 (729)
3 KOG1081|consensus 96.1 0.0024 5.1E-08 55.6 1.3 84 2-89 208-300 (463)
4 PF07645 EGF_CA: Calcium-bindi 78.2 0.39 8.6E-06 28.4 -1.0 30 61-91 4-34 (42)
5 smart00468 PreSET N-terminal t 75.8 3.7 7.9E-05 27.9 3.1 41 30-72 22-62 (98)
6 PF05033 Pre-SET: Pre-SET moti 44.9 15 0.00031 24.8 1.5 33 30-63 20-52 (103)
7 smart00179 EGF_CA Calcium-bind 35.2 12 0.00026 20.2 -0.1 24 66-90 9-32 (39)
8 cd08002 WGR_PARP3_like WGR dom 31.0 79 0.0017 22.2 3.5 38 4-41 61-98 (100)
9 cd00053 EGF Epidermal growth f 29.8 16 0.00035 18.8 -0.2 24 65-89 5-28 (36)
10 PF10393 Matrilin_ccoil: Trime 29.0 23 0.0005 22.5 0.5 11 62-72 3-13 (47)
11 PF01535 PPR: PPR repeat; Int 22.1 92 0.002 15.5 2.0 15 3-17 15-29 (31)
12 TIGR00756 PPR pentatricopeptid 21.7 1.1E+02 0.0023 15.3 2.1 14 4-17 16-29 (35)
13 PRK00736 hypothetical protein; 21.2 1.3E+02 0.0028 19.8 2.9 8 29-36 61-68 (68)
14 TIGR02573 LcrG_PcrG type III s 21.2 66 0.0014 23.2 1.6 29 9-37 57-86 (90)
15 PF14044 NETI: NETI protein 20.5 43 0.00094 22.3 0.5 9 72-80 11-19 (57)
16 PF04102 SlyX: SlyX; InterPro 20.2 66 0.0014 21.0 1.4 9 28-36 61-69 (69)
No 1
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=99.17 E-value=1.7e-11 Score=78.98 Aligned_cols=35 Identities=29% Similarity=0.658 Sum_probs=30.5
Q ss_pred CCCCceecC----CCCCCCCCchhHHHhhhhhcC-CcCccce
Q psy11187 55 SSTPVCECD----ESSPCGVGSSCINSSIGQSAE-SCIAISS 91 (115)
Q Consensus 55 sE~~~C~C~----d~~PCG~~S~CLNRmL~~EC~-~C~a~~~ 91 (115)
.|.++|+|. |+++|| ++||||||++||. .|++|+.
T Consensus 1 ~e~~~C~C~~~~~~~~~Cg--sdClNR~l~~EC~~~C~~G~~ 40 (51)
T smart00570 1 DDIMTCECKPTDDDEGACG--SDCLNRMLLIECSSDCPCGSY 40 (51)
T ss_pred CCCceeeCccCCCCCCCcc--hHHHHHHHhhhcCCCCCCCcC
Confidence 378999992 478999 9999999999999 9999864
No 2
>KOG4442|consensus
Probab=97.19 E-value=0.00019 Score=65.96 Aligned_cols=57 Identities=18% Similarity=0.446 Sum_probs=38.8
Q ss_pred CCCCCceeeeccccccccccc-CCCCCCCceec----CCC--CCCCCCchhHHHhhhhhcC--CcC
Q psy11187 31 SRPSKYVKIKTNKPVGTVRLE-TDKSSTPVCEC----DES--SPCGVGSSCINSSIGQSAE--SCI 87 (115)
Q Consensus 31 ~KPP~YkkIKsNkpVg~vr~~-~D~sE~~~C~C----~d~--~PCG~~S~CLNRmL~~EC~--~C~ 87 (115)
.+-|.|.++=-++.....+.. ...-+.++|+| .|+ .-|+++++|||||+++||. .|+
T Consensus 38 ~e~~~~f~~~~e~~y~~krk~~~ee~~~m~Cdc~~~~~d~~n~~~~cg~~CiNr~t~iECs~~~C~ 103 (729)
T KOG4442|consen 38 EEALTKFENLDEKFYANKRKKKKEENDEMICDCKPKTGDGANGACACGEDCINRMTSIECSDRECP 103 (729)
T ss_pred cccchhhhhhhhhhhHHhhccCcccCcceeeecccccccccccccccCccccchhhhcccCCccCC
Confidence 344555554444444444544 33338899999 221 4688889999999999999 788
No 3
>KOG1081|consensus
Probab=96.12 E-value=0.0024 Score=55.64 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=72.6
Q ss_pred chHHHHHHHHHHHHHhhhhHHhHhhhcccCCCCCceeeeccccccccccc-CCCCCCCceec--CCCCC--CCCCchhHH
Q psy11187 2 TSLREAAEAFREFQRNRDRIKTEETNERASRPSKYVKIKTNKPVGTVRLE-TDKSSTPVCEC--DESSP--CGVGSSCIN 76 (115)
Q Consensus 2 ~ALeEA~~~f~elK~~Re~~~~~e~~~~~~KPP~YkkIKsNkpVg~vr~~-~D~sE~~~C~C--~d~~P--CG~~S~CLN 76 (115)
+++.++..+|.+++.+.+....+ ..++++.|..|+++.|++..+.. .....+..++| +++.| +|..+.+++
T Consensus 208 ~~~~~~~~r~~~~~~q~~~~~~~----~e~k~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 283 (463)
T KOG1081|consen 208 EKIKEAKARFGKLKAQWEAGIKQ----KELKPEEYKRIKVVCPIGDQQIYSAAVSCIKKLLAKPTDEKPNSRGASEEATK 283 (463)
T ss_pred hhhhcccchhhhcccchhhccch----hhcccccccccccccCcCcccccchhhhhhhhccccccccccccCCcHHHhhh
Confidence 46778889999999998877766 68999999999999999999977 88899999999 67776 899999999
Q ss_pred --HhhhhhcC--CcCcc
Q psy11187 77 --SSIGQSAE--SCIAI 89 (115)
Q Consensus 77 --RmL~~EC~--~C~a~ 89 (115)
++++++|+ .|++.
T Consensus 284 ~~~~~~~~~~p~~~~~~ 300 (463)
T KOG1081|consen 284 SEKMLAYEVHPKVCSAE 300 (463)
T ss_pred hHHhhhhhhcccccccc
Confidence 99999996 44443
No 4
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=78.24 E-value=0.39 Score=28.39 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=25.3
Q ss_pred ec-CCCCCCCCCchhHHHhhhhhcCCcCccce
Q psy11187 61 EC-DESSPCGVGSSCINSSIGQSAESCIAISS 91 (115)
Q Consensus 61 ~C-~d~~PCG~~S~CLNRmL~~EC~~C~a~~~ 91 (115)
+| ...++|+..+.|+|..--|.|. |+.|-.
T Consensus 4 EC~~~~~~C~~~~~C~N~~Gsy~C~-C~~Gy~ 34 (42)
T PF07645_consen 4 ECAEGPHNCPENGTCVNTEGSYSCS-CPPGYE 34 (42)
T ss_dssp TTTTTSSSSSTTSEEEEETTEEEEE-ESTTEE
T ss_pred ccCCCCCcCCCCCEEEcCCCCEEee-CCCCcE
Confidence 46 4557999999999999999998 887765
No 5
>smart00468 PreSET N-terminal to some SET domains. A Cys-rich putative Zn2+-binding domain that occurs N-terminal to some SET domains. Function is unknown. Unpublished.
Probab=75.82 E-value=3.7 Score=27.85 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=29.6
Q ss_pred cCCCCCceeeecccccccccccCCCCCCCceecCCCCCCCCCc
Q psy11187 30 ASRPSKYVKIKTNKPVGTVRLETDKSSTPVCECDESSPCGVGS 72 (115)
Q Consensus 30 ~~KPP~YkkIKsNkpVg~vr~~~D~sE~~~C~C~d~~PCG~~S 72 (115)
...||.|+-|+.+.+-..+-+..+.+-..-|+|++ .|...+
T Consensus 22 ~~~p~~F~Yi~~~~~~~gv~~~~~~~~~~gC~C~~--~C~~~~ 62 (98)
T smart00468 22 DPPPPDFEYISEYIYGQGVPIDRSPSPLVGCSCSG--DCSSSN 62 (98)
T ss_pred CCCCCCcEECcceEcCCCcccccCCCCCCCCcCCC--CCCCCC
Confidence 44568999999999877664345677778899954 565553
No 6
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=44.87 E-value=15 Score=24.76 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=18.4
Q ss_pred cCCCCCceeeecccccccccccCCCCCCCceecC
Q psy11187 30 ASRPSKYVKIKTNKPVGTVRLETDKSSTPVCECD 63 (115)
Q Consensus 30 ~~KPP~YkkIKsNkpVg~vr~~~D~sE~~~C~C~ 63 (115)
...||.|+-|..|++-..+. ..+......|.|.
T Consensus 20 ~~~p~~F~Yi~~~~~~~~~~-~~~~~~~~~C~C~ 52 (103)
T PF05033_consen 20 EPPPPNFEYIPENIYGEGVP-DIDPEFLQGCDCS 52 (103)
T ss_dssp --SSTSSEE-SS-EESTTSS--TBGGGTS----S
T ss_pred CCCCCCeEEeeeEEcCCCcc-ccccccCccCccC
Confidence 34478999999999988765 4566677789993
No 7
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=35.24 E-value=12 Score=20.17 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=18.2
Q ss_pred CCCCCCchhHHHhhhhhcCCcCccc
Q psy11187 66 SPCGVGSSCINSSIGQSAESCIAIS 90 (115)
Q Consensus 66 ~PCG~~S~CLNRmL~~EC~~C~a~~ 90 (115)
+||..+..|+|..-.|.|. |+.+-
T Consensus 9 ~~C~~~~~C~~~~g~~~C~-C~~g~ 32 (39)
T smart00179 9 NPCQNGGTCVNTVGSYRCE-CPPGY 32 (39)
T ss_pred CCcCCCCEeECCCCCeEeE-CCCCC
Confidence 6888777899988888885 66553
No 8
>cd08002 WGR_PARP3_like WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-3 and similar proteins, including Arabidopsis thaliana PARP-
Probab=31.03 E-value=79 Score=22.21 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhhHHhHhhhcccCCCCCceeeec
Q psy11187 4 LREAAEAFREFQRNRDRIKTEETNERASRPSKYVKIKT 41 (115)
Q Consensus 4 LeEA~~~f~elK~~Re~~~~~e~~~~~~KPP~YkkIKs 41 (115)
|++|...|+.+-.++-..+=.+.......|+.|..|..
T Consensus 61 l~~A~~~F~k~F~~KTgn~W~~R~~f~k~~gky~~ie~ 98 (100)
T cd08002 61 LEGAIKDFEKKFKDKTKNNWEDRENFVPHPGKYTLIEM 98 (100)
T ss_pred HHHHHHHHHHHHHHHhCCchhhccCCCcCCCcceEEEe
Confidence 78999999888776644333333345678888988754
No 9
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=29.79 E-value=16 Score=18.76 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=17.1
Q ss_pred CCCCCCCchhHHHhhhhhcCCcCcc
Q psy11187 65 SSPCGVGSSCINSSIGQSAESCIAI 89 (115)
Q Consensus 65 ~~PCG~~S~CLNRmL~~EC~~C~a~ 89 (115)
.++|..+..|.|.--.+.|. |+.+
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~-C~~g 28 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCV-CPPG 28 (36)
T ss_pred CCCCCCCCEEecCCCCeEeE-CCCC
Confidence 56888888888887677774 5544
No 10
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=29.02 E-value=23 Score=22.46 Aligned_cols=11 Identities=36% Similarity=1.054 Sum_probs=4.9
Q ss_pred cCCCCCCCCCc
Q psy11187 62 CDESSPCGVGS 72 (115)
Q Consensus 62 C~d~~PCG~~S 72 (115)
|.++|||++++
T Consensus 3 ~~~edpC~CEs 13 (47)
T PF10393_consen 3 CSDEDPCKCES 13 (47)
T ss_dssp --SS-SS-TTH
T ss_pred cCcCCCcccHH
Confidence 46789997543
No 11
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=22.12 E-value=92 Score=15.47 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHh
Q psy11187 3 SLREAAEAFREFQRN 17 (115)
Q Consensus 3 ALeEA~~~f~elK~~ 17 (115)
-+++|.+.|++++..
T Consensus 15 ~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 15 QFEEALEVFDEMRER 29 (31)
T ss_pred hHHHHHHHHHHHhHC
Confidence 367888999888753
No 12
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=21.69 E-value=1.1e+02 Score=15.29 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHh
Q psy11187 4 LREAAEAFREFQRN 17 (115)
Q Consensus 4 LeEA~~~f~elK~~ 17 (115)
+++|.+.|.+++.+
T Consensus 16 ~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 16 VEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHHHHc
Confidence 57888889888654
No 13
>PRK00736 hypothetical protein; Provisional
Probab=21.22 E-value=1.3e+02 Score=19.83 Aligned_cols=8 Identities=13% Similarity=0.671 Sum_probs=5.9
Q ss_pred ccCCCCCc
Q psy11187 29 RASRPSKY 36 (115)
Q Consensus 29 ~~~KPP~Y 36 (115)
-..+||+|
T Consensus 61 ~~~~PPHY 68 (68)
T PRK00736 61 PVTKPPHW 68 (68)
T ss_pred CCCCcCCC
Confidence 46678888
No 14
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=21.21 E-value=66 Score=23.21 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhHHhH-hhhcccCCCCCce
Q psy11187 9 EAFREFQRNRDRIKTE-ETNERASRPSKYV 37 (115)
Q Consensus 9 ~~f~elK~~Re~~~~~-e~~~~~~KPP~Yk 37 (115)
+.+.|++.+|+.+-.+ .+.+..++|++-.
T Consensus 57 ELL~EiqRrr~~qp~~~~~GkR~RRPtmMR 86 (90)
T TIGR02573 57 ELLEEVQRRRSQQPQQGEQGKRPRRPTMMR 86 (90)
T ss_pred HHHHHHHHHHHcCCCCCcCCCCCCCCcccc
Confidence 5677788888776665 5567777887753
No 15
>PF14044 NETI: NETI protein
Probab=20.49 E-value=43 Score=22.29 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=7.1
Q ss_pred chhHHHhhh
Q psy11187 72 SSCINSSIG 80 (115)
Q Consensus 72 S~CLNRmL~ 80 (115)
++||.||-.
T Consensus 11 ~~CL~RM~~ 19 (57)
T PF14044_consen 11 SDCLARMKK 19 (57)
T ss_pred HHHHHHHHH
Confidence 689999853
No 16
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.20 E-value=66 Score=21.02 Aligned_cols=9 Identities=22% Similarity=0.578 Sum_probs=0.0
Q ss_pred cccCCCCCc
Q psy11187 28 ERASRPSKY 36 (115)
Q Consensus 28 ~~~~KPP~Y 36 (115)
....+||+|
T Consensus 61 ~~~~~PPHY 69 (69)
T PF04102_consen 61 PEEEPPPHY 69 (69)
T ss_dssp ---------
T ss_pred CCCCCcCCC
Confidence 456788888
Done!